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Gene list

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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: 1

Number of genes found: 29

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# Azoarcus sp. EbN1, EbN1

>p1B128 hypothetical protein
MRYDEIERSLGVGSEDSDRVIDAELVSPGRLRLITIASLVISMGAVATAA
WFAAVATTRPAEQSAVHQSSQPLVDVVRQDAFDALHASIDDREETYKALF
EANQDRVSSLEARTKQLETALAALLPLIGNAMSAIEESPRSEAATKTTPQ
KPVERKPQVAMPARQAAPQPSVATIAPPPPRPAQMVVPPIAPTPTQTSTI
DETSLPMRVISKQAAGIQFKGESEIMDSSGKSVRAGQTAAGLDGKVLRIS
PEEGLVITDQRIYVLE
>p1B361 probable N-terminus of phage DNA or Uracil-DNA glycosylase polymerase
MPECIRCPALCASRSQIVMSTPAPLGGLLAIGEAPGEKEDEMGIGFTGQA
GKTLDRLLAEHGIGREGYGRANICRCRPPENRKPTRAEVDACMPYLAEFI
EQTRPRVLLLVGGTAAAHIVGTGSLARRIEMSRSPGGTWVDPAMCHPALR
SLAAQRGLLAVPMPHTSGLAWNRKTPAGEPWSEVGKRQVALAVELAQREG
>p1B110 hypothetical protein
MYEEVRKQVPLSSFLASILGEPVETRTGPRWSSCPHCGPSEHDSRKTTLS
GKGEFFRCFACGSHGDVIEAAALYHRCSHKEAAAKLAGDARVVVPFRHSR
RAAIPSSPDAGLVAEAMQKLLDAQVGYWDYNVVTYLTQERGLPLPLLRQA
HDKGYLRMLSSDVGIAASQVARTVGIKLLLASGLLSPEKKLPAIVYRPIL
FGFPGNDAVEFRRLPGESYGPKALRHGSVLMPWRWNEGKGTVALVEGLID
LLSLVAMGYEDEVIAVPGCRQWNHAWNPLLADRTVIIKFDPDGPGQAAAA
DLSSELQSEGIRAWVDCPKDGDINDVLLASLRRRVA
>p1B297 hypothetical protein
MRQGMAWVYVQYASKSSPLFALETTARTKKLGLWADPHATPPWEWRRAGR
AGTGRPIASLAPTSIDEASSSSSVRGNRRSKVYHLFHCPSYDAVGPQNRV
EFSSERAAASAGFRKAGNCR
>p1B57 DNA helicase
MAWQVLQRAVFDGAEYGLLFHYHDGQIAAAIKRGEVRPFYVHDANHPYRR
YWRFHRSIMDNAQPFEVLISTIARAVSMAYASVRQEFLEALAEAEINPGA
FGYGITQTIYPIGEREFVVIGSKFHAIAVKTFKEMGGRWLKEAGGWHLRD
TSLPMLVTTLEREAGYDEQNILVHPGSFTLQDVHLLSGLGATPIPFPTFE
HDLSACQDAESEGDHGIVVPTIERVAETGLTEADVLACIPKGAAHDYQVT
GAVFMATRTGALNADDMGVGKTRQAILAAYAVKLKHERKLVILVVPKSVR
YKWEREILAIYPEEKVQVLEGVDVAPEAEWVLLNYEQAGKWQILGEQACA
LIVDEAHKLKTESALRTQAVYALASTIPVRYLLTATPILNRESEMYALLK
ITGHPLGSMELPDFVSRFAGSREFRAALNEAITGNWMIRRSKHQVLRGKV
PGKERNYRSIPMPKKMAQAYQEALNSGTSTFGVLHSTRRFLQEACIKEAG
KYLKKEVAKDEKMVVFVNYTEDAYAHAEYLTGLGKGRFVVLTGDILSDAK
RQELLDCVQRDDSVKGIVGSYGVLAEGVDLWRANHVYIASQPWTPATLEQ
AEDRCNRLGQTRLVRVEIPIFAGTIDEAIRELISGKAEIVEDVLDPEEAE
RAAIRKVTELVKGGRKAVAVV
>p1B105 conserved hypothetical protein
MKIVKLDQRSQEWHDWRAGKDIDGPRITASNIAVIAGISPFKSRYQLWEE
MTGRREPDKMNPAMAHGVETEDEALAAWIQDHGDYAQPCCIEHDGIPWVA
ASLDGLTLTGTKAVEIKCPYSRYGDAPKLWVSAQAGEIPAYYLAQMQWQM
FASNGEILSMDFWVYWAGKGIKIPVQSDPLEQQRLYAEAKTFREAVINDD
IPATDAWIDAASAWRQAKLEYDMAKETLDARAKDIENLLAANGESSYEGC
GIVATKYSSKGAVDYGALFESVKEHHGIDLVMLAEQFRKDDSERFKITLQ
KKAPAAKASTKRTTEAETEIADAMLQSAAEEAWF
>p1B347 putative exonuclease
MDHEQMVLALEATGQYRVLRRFVPAESYQLDDEKIEVSRVRSVLVVDVET
TGLKKDSDKIIDIGLVLAEFDRVSGQVLRVLERYSGFEDPGRPIPEEITR
LTGIRDEDVLEQTFDDARVEALIARADLVVAHNAPFDRGFLELRFPSFQK
KWWACSQREAPWSQMMTGSTKLEWLAFQIGGCFYEAHRALVDAEVTLFIL
AQMGPGGRPILSHLLEVSGRKTYCVWAEGAPFEAKDKLKLEMGYSWSDGA
SPDKPIKAWFKQGVVDLEAELETLARTVYLRPAHLTIDSMTGYERFTDRY
HSRDKRPLPGLHVEVPEPVAAPAVEPSRTSTPSSVPTHGLPL
>p1B201 predicted staphylococcal nuclease homologue
MFDRYTLILLACFSLNTFAAGNPQITGTVVGVADGDTLSVLDSSKREYRV
RLAEIDAPESSGQAFGNQAKHALSRLCYRKLAEITVHTKDRYGRNVGVVT
CDGVNANAKMVESGLAWVYTQYASANSPLFGLEQQARLAKRGLWRDANPV
PPWEWRKSR
>p1B125 hypothetical protein
MRATAVSFEDVRNAFFEVLAEGGNPTFEAIYTKIGRRGGADVVRKLIAEV
KTEAANLHEKLTLSRMPGVPDPLVDLLNEFARTSWDLALDGATKNLEAAR
ADLERKEDALEEENKALRATADDFVQKALLLQKELAGLERMCAERTERIQ
ALTEEVQHLTERNENLHAEIAHYQRRIGELEGSVQAERERGDRLLASATE
RHEVALASLTERHQALVAELRAEAERQMKLADDRADGDRKHLLKQTDDLR
QEFVRKESSLKQALEGAQINEKKAREELRDCRKESAGLREQLAEANGKIT
ALSSIEALIGSLRTANNTPERKEQD
>p1B327 putative kinase
MSQIITLTASDGSTVQFVDEKKASGGLKDVFFSPDKTYVVAFYRDKLDQV
GRERLNLITGTYRDRVFNQEGGDYLKNLLCWPRATVEHNGRVGVVVPFFA
KHFFFEHGSRNDDQMLGIRKREKEGKWFASAKNRSKFLDPRELGDGLTQL
KTCIMMARAVRRLHSAGLAHSDLSYKNVLVDPSAGRACLIDLDGLVVPSK
FPPDVAGTPDFFAPEVVATSKLDRHDPNRKLPSRLTDQHALAVLIYMNLL
FRHPLRGDKVHDVNDTQRDEELAMGERALFIEHPTDHSNRVKLANVPPAE
LPWKDTQKLPYTITGPYVSELIRRAFIDGLHHPNARPTADEWETALVKTA
DLLQPCQNPQCAQKWFVFDNTTKPCCPHCGTAFRGKLPVLNLYSSHKEGS
FRTDNHRLMVYSGQSAFQWHSSRLVFPNERLTPEQAKRVGYFVFHNDDWY
FVNEALPSLRDVTAMQDIPVGGRIKLEDGGQILFARETGGRLAVIQMVSQ
>p1B369 hypothetical protein containing helix-turn-helix domain
MAVVVTFRVPKNVCEKLVPGFGTPAADALAVKHVMRSTVAKALEEKLDLL
HIEVPSKAAIERVNLSLNSELAEQVRVLSKSSGVPESVVCQRLILSYAAV
HESAHLESVPGGCELLEEAWAAAGLSTRVEQAQVFLNLRGAFEGGQIALV
EAATGVGKTLAMLLAAEQCLRDHPGGRVAIAVPTIALMRQFAEAYGRLPG
SLSMHPLHAVFGRREFVSRDAVRELLKNPKYFDAMQAVERWIELDGEPLP
DSPFQKRWLVSTLKQIAPALPVAVCCLSDTPDEDDPGFQSYLEQFEHEIR
PESEILLCTHAMLGYSTKQRHWVASRSDEVRALRTREIDLMLAIRAEENG
KEKARLLQALREIEAERIRCGAEASEHAGKLPPFAYLLVDEAHQFEAAMA
SANASYLSLRDLLRAAEYCHKEGYGISAAKVAAIRAGIERLRAISLFAKG
ETIALSERTSAAEQVRASLAEILDACSVGRVRNRDENRSAHAKLREVEYA
KIILRAAVNSQSSRQHALVKFSPVRTYPQLYVGAGRVDGLMGSLWGSVSG
AACVSATLLLPKADGGYSSYHHKRLLSIPDGRFHAFAPISPSWLREAIQS
VHLPVAEPRLCPPSRGDKLTSAALQEAERTWLEAVCEEVTRIQASAAGGV
LVLMTSYHSIQVLSALMPFQLRASAVFGTADATLAEQASAFLRLRMAGRK
AVWFATGGAWTGLDIGGHEPLHTLLGQPALSAEEDNVLTDVVIPRLPFGL
NKSVTHEYRIRNEPAVPWEVLDMILRLKQGMGRLIRRAGLPNNRRIHLLD
SRIHRPHFKMIDERVRSIFAPYGRG
>p1B234 hypothetical protein
MNREKPAFEPWRNNLRRRNLFIGALTAATANAVIPVVDLGLQANVILCAA
LAVLAANQHRRAQVRQHGQHVEAKCGQLAKTALESDGYTVALGQRLHRGG
DIDLIATKDGSSVVVELKSFRYWGARGRDDWREKKAIEQVLRQQDTIAAK
AAVIWLPMASPTLWQLLWGYSFGGRGVAVVRGGVRHLARAVRKKAS
>p1B257 dnaB, hypothetical protein
MSRKDNTPPVQPGVLPPHSIPAEQGLIGGLLLDNQFFDRVIDVVKVQHFY
DQAHRLIYQAMFDLYAQNKAVDLITVADSLAAKGTLEQAGGFAYLAEVAN
GAISTAAISSYAKIIRSKAVLRHLGAACNRILQTIHDPGTKKAEEILDEA
EALMLRVTGKIIGQEDGPVPARDFVGAVFRDATAVPSPNGLQGLSTGLSG
LDQITLGLCPADFIVIGARPSHGKTTLALNIAEEVGLRRGLPVLIFSPEM
PKEQLSLRMLSSMSGIKHSTLRTRNISAVEKDVFASSLAKLSAAPIYIDD
SARLDANALRARARRTAKRAGSLALVIVDYIQLMATADEVDNATRNLEVQ
GISRSIKALAKELNVPVIAVSQLNRSVDRRSNQRPILSDLRDSGSIEQDA
DVIIFLYREGATKSEEQSAESEAELIVAKQRNGPIGSVKVLFKPETLSFR
NTPRKEN
>p1B119 int, probable integrase/recombinase protein
MIGDVDLVQKGQVTRLEEAAPDRLPRALVRANSDEELIRLWLDAVGAASE
NTMAAYKAETLRFLAWMKTRSISLDGLVYEDLQDFEEWLRNPPADLIGPR
RPIGSPDWRPFASAGLSSTSVERALSVIANLYSFLHESRRVSMNPVKFYR
AWQKNARKKNRSQRTRKQLESSVESAVRQWLDDEAGASISDRWSVGALYF
LGLRVSELCSARMSDLFVSDGAWFLAVVGKGLKRRDVAVSKVCLRLLAAY
RLDVGLSPEPRGEDWPLVGSKWDPKKPITRRAMHKRIVAAGLDAVFDENS
PGKELSANLHPHLYRHAAASRWIRQGANLLSVRDQLGHSSVTTTEIYAHR
PDAARHADTAGADDIESAKEMER
>p1B207 int, putative site-specific recombinase
MTKRAAVLLPSQLRHLLRVTETTSRHPERDVLILWLGFSCGLRVTETARL
TVADVLLPSGRLKAEISLRAEITKGCRQRLACLAHPKLVAALERYIEWRK
AKRFACTFNDRQYRGLNPASRLILTWKGGPYALDLKRTTNTAGEPVEYWA
ADSLQAYIKGLYRAAGLHLASSHSGRRTFASRLLAVGESLETVQALLGHA
DLDHVMPYLEVNEDTLREMFEVVV
>p1B202 istA, transposase
MERRKVTFKLYPNARQAERLTCWVRLHCELYNAALQERIEAYRKCGKSIS
YYDQQNVLPEIKAARPELVELGSHALQQTLRRLDLAFAAFFRRVKAGQTP
GFPRFKSSARFSGFCYPDPAGWKLMQCGKRGGTLRLGSGKDAMSIRLRGQ
HRFGSEAKPNDLTITRKNGEWFASVTLRVQETACARERSDAQHRGIDFGI
SDWATFDNGKAIANPRWVREELPKLATLQRERARKRKGSLRYKRISWQAA
RLHERIANLRREFVHQETTKLVQTCAVIATEELAPKNMSRSARGTVEAPG
RRVRQKAGLNREILSAAFGMAHQMLSYKAAEAGTRLHLANTRQLKPSQRC
AKCWATVPKTLAQRVHVCPHCGHTAPRDQNSASVVLIDAHTPGTGVAARP
KPLPTVRSRKSKSMTRETPATTTQGV
>p1B195 istA, transposase
MPGRKITDQQVRKYTEARRQATQQIAAARMGISVRSARRIEQADGLPSQG
GPRTWRTRADPLAGVWEEELLPLLAREPGLQGRTLLEELQRRHGDVFGDG
VLRTLQRRIRMWRAEHGQEKEVFFAQSNPPGRLALSDFTVCNELNVSIAG
ERFEHRLYQFALAYSGWRHAELVCGGESFAALAQGLQNALWALGGVPEEH
RTDSLSAAFNNLAEAETLTRRYADLCQHYGMRPTRNNLGQSHENGAIESR
QGSLKGALDQALLLRGHRDFATVADYQRVVADVVARLNRRIQTPLTEERS
QLKALPVRRTSEYEEIEARVTKFGTVSIRRVLYSVPSRLIGHRLQFRLYP
ERLEGWLGGVSVFESVRGTVPAGKPRGKQIDYRHLLPALKRKPGAFARWA
LRDEMFPRTEYRQTWERLVEKLPERQACKLMVGLLDLAARGACEAQLAQV
LGEVLQADAVPDLDALAERFAPRETPMPVVTVSLPPLSAYDDLFAVAA
>p1B6 istA, transposase
MENFLRGHVGAFECWGAVPRIALYDNLKSAVLERCGNAIRFHPTLLALAG
HYRFEPRPVAVARGNEKGRVERAIRYVREAFFAGCAFADLDDLNAQAQAW
CEGAAGARRCPEDASMTVAEAFAAERERLLARPETPFPTDELRAVSAGKT
PYVRFDLNDYSIPHTHVRRTLTVLADPLRVRILDGENVIATHARSYDRRQ
QIECDAHLEALVAHKHAASAHRATDRLTAAVPTCQALLAQAAERGEPLGR
TTRALTDLLDRYGADELGAAVDEALARGVPHPNAVRLALERRREAPPPLG
VPLPAHLKTRDVTVRAHPLAGYDRLLEDDHDDA
>p1B269 istA, transposase
MPGRKITDQQVRKYTEARRQATQQIAAARMGISVRSARRIEQADGLPSQG
GPRTWRTRADPLAGVWEEELLPLLAREPGLQGRTLLEELQRRHGDVFGDG
VLRTLQRRIRMWRAEHGQEKEVFFAQSNPPGRLALSDFTVCNELNVSIAG
ERFEHRLYQFALAYSGWRHAELVCGGESFAALAQGLQNALWALGGVPEEH
RTDSLSAAFNNLAEAETLTRRYADLCQHYGMRPTRNNLGQSHENGAIESR
QGSLKGALDQALLLRGHRDFATVADYQRVVADVVARLNRRIQTPLTEERS
QLKALPVRRTSEYEEIEARVTKFGTVSIRRVLYSVPSRLIGHRLQFRLYP
ERLEGWLGGVSVFESVRGTVPAGKPRGKQIDYRHLLPALKRKPGAFARWA
LRDEMFPRTEYRQTWERLVEKLPERQACKLMVGLLDLAARGACEAQLAQV
LGEVLQADAVPDLDALAERFAPRETPMPVVTVSLPPLSAYDDLFAVAA
>p1B4 istB, istB transposition helper protein
MTTPEPLLARARALQLHGVVSHWAECAQAPWIAPLIEWEETERARRSLER
RLRCAHIGRFKPLADFDWRWPEQCDQAAIAELMTLGFLETATNALLVGPS
GLGKTTIAQNIAHQAVLRGHTVLFTTAGQLLGELAALDSDSALRRRLRHY
ASPTLLVIDEVGYLSYSNRHADLLFELISRRHEKKSTLITTNKSFAEWSE
VFPNAACVVALIDRLVHHAEIIALKGPSWRHKEAQERAATNARKRKSARS
PA
>p1B204 istB, transposition helper protein
MKNANKSSSHAVFNLKLHIIFVTKYRRKTLTPELLDYLKEAFADCLSAWR
CKLVEFGGDHVHLLADIHPALDISILINNLKTASARRARNRFADHLAAFY
KKPLFWHRAYFVGSVGGATLETVRAYVDAQGTEEHARQSEAKRKAKPSA
>p1B267 istB, transposition helper protein
MSAVEAVTLPMMLTELRLPTIKRLWPALAEQSNREGWPAERFLAALCEHE
MNERERRRIDRHRAESGLPPDKRLSAFDFAAVPTVSKAHVTALAEGDSWL
EQGANILLFGPPGVGKTHLIASLGHALVERGYRVLFTRTSDLVQRLQAAR
RDLRLPAELAKLDRFDLLICDDFSYVRRDQGETSVLFELIAERYERKSLA
ITANQPFSGWDHVFAEPAMTLAAVDRLVHHATIFEMNVESFRRRVAQKGL
APSEQRKPQTSNPKG
>p1B193 istB, transposition helper protein
MMLTELRLPTIKRLWPALAEQSNREGWPAERFLAALCEHEMNERERRRID
RHRAESGLPPDKRLSAFDFAAVPTVSKAHVTALAEGDSWLEQGANILLFG
PPGVGKTHLIASLGHALVERGYRVLFTRTSDLVQRLQAARRDLRLPAELA
KLDRFDLLICDDFSYVRRDQGETSVLFELIAERYERKSLAITANQPFSGW
DHVFAEPAMTLAAVDRLVHHATIFEMNVESFRRRVAQKGLAPSEQRKPQT
SNPKG
>p1B237 rdgC, predicted DNA recombination-dependent growth factor C (exonuclease)
MLLRSAFVFSCDCPHSPEELEEVLASRKFSGIGQLDVDHLGWVNPRELEN
GPLVHAVDSIFLLALSKETKIVPASTVKKKLAAAEADATKREGRPPSRKE
RKALKEQVYESLLPGAPTRIKQTFGVLIPPKKQLLVLTTSAKCLEDFHGV
FTDSFMKRGMRPSFRKLRTVQPPSLKMTEWLLNNECDGGFVLGEHCELTH
EKSKVRYTALELDRPEIREHLLEGKVPVKLGLRHESTTSFIISCGSADED
LGFSKIHYGDNDGKTEGEGTADEVFDSDLVFSVTEFLGIVNELFEAFGGI
APDVEVLASGEAFQ
>p1B53 recG, ATP-dependent DNA helicase
MALYKGIPGRLKAQTVSGAIAENLTLLERAGKLLLQKCRLSLAEFDRLTG
YQTPHALLLALHAPNSVREGEEALAITRELCVQSIVKAAQANKITRNVPA
SSIPIQDEEVAKLLSALPYTLTKDQQIAIQEITADLRSKRPMNRLLAGDV
GTGKTLVFLIPLVAAHLAGARVAVMTANQLLVEQALRELAEYFPDVPTFQ
VKPGTKDLPNAILIGTTSVIGALARVKGTLDFVVTDEQHKFAVSQKQSLM
DEHTNLLEATATAIPRTLAVVQFGGMDVSLLRECPVQKDIASRIVLSHEK
DRLLDFIKKVAAAGRQTAIVYAAVNAGSEGKSIEDNAAKWLKHFPDQVAI
AHGQMPAEEKQEALRQMRDKEKLILVSSTVIEVGITLPSLACLIVVNAER
FGVAQLHQLRGRVSRHGGRGYFFLYLPQPVTDDEDDDAAYGKTAADRTMK
RLQLLVDHSNGFDLAEKDAELRGLGDLSSTGSSQHGKTAFLFPNLKIHVH
ELKKALVVAGLEA
>p1B231 tnp1P2, transposase
MVRILVLKRLYNLSDEQMEYQLLDRMSYKRFCGLASAINIPDRTTVWTFE
NRIGEAGAKVLFDGVSAQLLKRGFIARGGQIIDATLVPAPKQRNSREENK
LVKEGAMPADWKPAKRRQKDTDATWTKKHGKSHFGYKLSINVDKKYKVIR
KIETGTASIHDSQHFESVFYTLNTSRDVYADRGYTSKGREDWLKDKGYRN
QIQRKGTRNKPLSECQQGRNHRIAKTRARVEHVFAAIDQMGGKMVRTIGQ
ARANFTMTMMAACYNLKRLVYFQKAGIEAF
>p1B280 tnp1P4, transposase
MVRILVLKRLYNLSDEQMEYQLLDRMSYKRFCGLANAANIPDRTTVWTFE
NRIGELGAKALFEGVSAQLLKRGFIARGGQIIDATLVPAPKQHNSRGEKA
LIDQGAMPADWKPAKRRQKDTDATWTKKHGKSHFGYKLSINVDKKYKFIR
TLETDTASTHDSQHFDNVFDTSNTSRDVYADRGYPSEERAAWLKANGFRN
QIQRKGQRNKPLSECQQRRNTRIARTRARVEHPFAAIAQMGGKLIRTIGQ
ARASFAMTMMAACYNLKRLTYFQKAGIVAF
>p1D3 tnpF, fragment of transposase-like protein
REWTCVACGSTHDRDINASRNILGRGRA
>p1B145 topA, topoisomerase IA
MRLYIAEKPSLGKAIAENLPGVKSRDDGFIRVGTDVVTWAHGHILELAPP
EAYNPAWKSWNTAVNVLPYPIECFKLLPKPDSKAQLRVIQSLLSQATEVV
NAGDPDREGQMLIDEILESSAWKGPTLRLLINATDPVTVKKALSSMRPNS
EFFNLYQAAKCRSEADWIIGMNLTVAATKLLANDELVSVGRVQTPTLALV
VRRDEAIEKFGARPFFSLEVTLETPQGPIVLTYNPSDESKRIWSEVDAKR
IVEEVKQRQSVTVTVTTGIKKESPPRLFMLRTFQGECNSRYGWSASKALE
LAQSLYDSKHQLASYPRTDCEYMPAGQANDALTIAQHIVKQTSFTAFAPL
LSLAVPRASIYDSSKVTEHHALTPTVKSADFKTLTADEQKAWLLLAERFL
MSLLPSHQIEETVVSFSHGEIEFSAKGEVSLNMAQSWRALAPHTYKPLPQ
VADGATLQMAGLRVVKGKTTPPKRYTEKTLLDDMSSVAKYVEDPKLKAIL
KETSGIGTAATQAKIIETLKERGYVAVKNRELISTPFGRAVVHGLPERLT
DPCLTALWEDALGLIAAGGMKPGDYMLRVRGMCKQLVDDVRDSVGKKAIV
GDKELVKNKRAKLLEQRRSQQSSSRASATAGLPL