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Gene list

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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: pPBPR1

Number of genes found: 9

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# Photobacterium profundum, ss9

>PBPRC0044 putative helicase[Photobacterium profundum SS9]
MIDASVWEPKDGLKFDDKSLGIIKCDNNISIMAGPGAGKTEILAQKACFI
LETELCAWPYNVLSISRKRESASNIKNRVSLRCGNVLSERFHSFTIEAFT
KSIVDRFMHILPKHEQPNEDYKLVFNSRDSNFRDKLTFDQLTITALKIVN
SSSTLMSSIRATYKYVFIDEFQDLNGHQYDFVKSIFCGSQSVVTVVGDTK
QAVMKFANALPDGFIKFKQDFKADLKIIYTNFRAAPELKQFIDCIGNEWW
PINTESVESNIDSVALDKGDYSLLNFNDEEHEVKQLSLKIKKWISEDGIK
PKEIAILFRINTNNNYSKNLNIALLDLGVLSINESNIQDYLSEPLGKVLV
SLLCLLTRPRDIKAWECLRDSYLYCSSSNSLHNDFELTRILKLIGDTPFY
GDGDAKTFDSILDVTIEIMNEFFYENLKKTWTQYRQGTLMDETFHGVLEE
LKEARNISSSWSGAVDLISGVGAVRMMTIHKSKGLEFEAVVLLGLEDYSY
FRYGMTQKKLDEERSTVFVALSRAKSKLLISSAMSRKHTGPSKFMHVNSI
INDLTKFGMNRSRVDKLDTLKI
>PBPRC0055 putative transposase [Photobacterium profundum SS9]
MNIPLNYVRSYVAINKQGETLDFYFSHKRNKEAAYQFLKRCLRYYDVDNQ
PKTLNTDKHSSYANAIARLKKEGRLRADVEQRQVKCLNNGIESDHAPIKK
LVVATGGFKIRKRAWSTIQGFESLRMLNKGQFDFWLRHDERKTLVRERSA
FMNRLFNVEVVYQ
>PBPRC0022 putative DNA helicase (TraI) [Photobacterium profundum SS9]
MLSISPLSQSAGDAASYYLTEEKHHDLPDVSLEVDTQSPEKETNYYLKEH
SDEPNTQWFGKIAEQEGMLGKPVEEKQLEAVLSGTLNGTTVHGKRENHRN
GFDFTFSAPKSVSTLALVGGDKRLITAHDDAVKFTLSHMEKDAAQAKYTD
EQGKTAFANTGNLLFAMVRHKTSREDEPQMHTHALTSNMTKDSEDTLRAL
ASCFKQQGGVINGTNERIYNHQLYYGMLYQSYLSKQVESLGYGIHSVGKG
QFEIEGVPEGYLQSQSTRSQQIDEHARSVGMDSAAARDMAAKGTRKGKSY
ASDATLMEKWQGDAKASGFDIQAFVASSYARANSEAPSQSLKPAAMDAAH
RAINHQSQTRNQLGYEKLIESAATQFTQGEKLDVIDIKLAVDTLILQGHL
IGLNDSQSLFTTQTMIDNEQKLIASTQGQKRHLRTLVNTQSLEQQGLSAD
NQDKINTLFASRKQTNIVNVFGQSQQIASALLHVGTESGQRIHIITPDTL
SKQTTGAKVPREAFTATQWVKNLFRPEHTHTVQRLLHDKDTPYSNRDLFV
VEAANKLGVNEVQGLIDKAKVSNSKLIFLNHTHARQGMKAGRVMDTLKKG
NVTEHSWVDTKDNSAQLFVHEKNDGERIDAIARAYSDLTDTSQVQVLGTT
QKDVQALNTTIRHTLQQRGDINRHGVTVRTLNPVFLSDAQREVVSHYKKG
MVLSEWQKVHGRNTKQDFTVTAINRKNNLLTLKDSKGKTQDINPNTREAK
ARQFSISRSDSIEIARGDKLRVNGNHFASKLTQHQTLTVSSSNALFINLK
DNDGKYHLLATNQLNDAPLSYNFAQPLSKADDTKAHTLIGMKSYAASKEL
LHDLNHGQASRLDVFTDSGEKLDKHLEKSTIQPSAIHRVMQAHGDPEKFI
NSQTFDVLRQDVNATLHTLKDKALDKGLIESAVQYAIGTVSEKEAGFSQK
QLVIEAIKYAFEEKGQAIKETEIVAHLKQAENNQQLLSAEYHDGTRWTTH
AAIATETRILERLAAGKNTVTPLATPAQANAFLDKHPRFTDGQKSAVHLI
TTTADRFVAVQGLAGVGKSTMLESGIDLVKGIQAMNPEQTTFIGLAPTHA
AVNELKAKGVQSQTAQSLLTDFLSEKHTPGQFRNTVFLLDESSMTSNQQI
DQFTELVNITGARAVKLGDIYQLTSQEAGKPFELAITNNIIDSVTMKDMK
RQQNDTLLGAVHNIVDRQGESALEKLKQQAPLQDYQPLPATKNEQQADDQ
EQASINQSHNVISTYHNTGNPKKDQETATLALATTVALEYLSRTPQSREN
TLIIAYTNQERDDISHIIRQGLQQQKHLSAQQYNVPRLRSVGATNIEMAT
MMPYKSGLILRTGKDNYAAITDVDRQHGVVTVADMKTGEERPFFPKNHDH
TFTQLWSQSEQPLAKEDSIMLRQTDKSRQWQGNKVYRVTDINNGKIQLES
KDRHTLSLSTTQMKDAHWDYAYTRTADMAQGSTYENVITTIKGKGILTNI
RRAYIDITRASHHVKLITDNTEKTMLSWVNNETNKPSALETRDKYYPEHK
ALFNDRPIPKDNPVYQDINGRLDIKTMGKVINQQLPAYTESLATQLLGQP
DTTKSGRDTLTFQQPKGELKITLTGQYRGHFKNWGTGENGTLISLIMNKE
GLSYKAALFKADTLLSEPDKHQLTINPQHEQLKATVPLKQSQLEARAQQY
FNDGMPVTNTLAQTYLDTNPNRPFKDNDSIRYHPRVYSSETRSTHPALIA
KLETPDNQIKGISVTYLNDATGDISDLKINKRVLGTKSGNHIPINEGIQA
DYSILAVGIENALLINDNNPTNTDIIAVTNNNDCRTVNTDNLRENIIIVL
NQENTEISQRLIDDITSKLERDGKHATIIEPNDINNTPGSTLSDHIKTAI
NDITIKDNYIPDAITTLTNDINNAITPYINTPLTETEKSTVRDIAINEHI
EKQTNMILLEKETTLDTRTTQLEIDRELTR
>PBPRC0025 putative antirestriction protein [Photobacterium profundum SS9]
MTHSTVINSTITKQHQATSVSPLEQSGSNKNVSSKRKPRRVAKVAKDMYQ
IVTDRIIQSLEKGVKPWVCPWDRTQECTLLPMNFKTKHQYSGVNILLLWS
EIVEKGYSSPYWLTYKQAAELGGNVIKGQKGTAIIFYKMLEKDNDKGEKD
TIPMLKSFTVFNLDQIENIDKPSVTVSEARTVQGDFVTLDHVEAAMVETG
ATISHLGVRAFYSPSHDAITLPTKDRFASSNDYYATAMHELTHWSGHKSR
LDRDLKNSFGSKDYAFEELVAELGAAFCCADLSVFGEVQHEDYIAGWLKK
LNDDKRFIFKAASLASKAHAFLLNK
>PBPRC0053 putative transposase [Photobacterium profundum SS9]
MEDAENQLPDLSRAIIADCYDHLLTLNQRIEDQENCFNMLVSRSHNAKKI
MKVAGIGPITATAVIASIGKGEQFDKGRDFAAWLGLVPSQYSTGGKPRLG
RITKRGDKYLRTLLVHGARAVIANLGAQPLV
>PBPRC0052 Putative site-specific recombinase, resolvase family [Photobacterium profundum]
MYIFGYLRASTNEQDAQRAKSSLKSFVEEKGRRVASWYWENVSGASLKRP
ELMRLLDDAAPGDAILIEQVDRLSRLNDEDWITLKALIQEKNLKIISLDL
PTSHTALSAHINDEFTNAMLRAINNMMLDMLAAIARKDYQDRRRRQKEGI
EKAKNEGKFRGRQADLNKHEQIYKLRVINGLSIADTAKLADVSYRTVIRV
AQSYKANEPE
>PBPRC0034 conserved hypothetical protein [Photobacterium profundum SS9]
MSFVPLKPIPIKDRNSMIFIGKGRIDVKDGAFVVIDEVNGERMHIPVGSV
VCIMLEPGTRISHAAVKLAATTGTLLIWVGEAGVRLYSVGQPGGARSDKL
LYQAKLALDETLRLKVVRKMFELRFGEPAPERRSVDQLRGIEGARVRKIY
QMLAKQYGIEWHGRRYDPKDWEKGDVINQCISAATSCLYGVTEAAILAAG
YAPAIGFLHSGKPLSFVYDIADVIKFETVVPVAFLVASKKPNTPDRQVRI
ACREAFRKDRTLKRLIPLIEDILNAGEISPPIPYEDAQPPALPEPESIGD
EGHRTG
>PBPRC0059 putative transposase [Photobacterium profundum SS9]
MTNPEFKWKHFAPEIILWCLRWYGSTPMSYANLSDMLAERGISVNRSTIY
RWYIEYAPTLRKKLRRHQFIRTDSSWQLDETYVKVKGKWHYLYRAINKQG
ETLDFYFSHKRNKEAAYQFLRRCLRYYDLDNQPKTLNTDKHSSYANAIAR
LKKEGRLRADVEQRQVKYLNNGIESDHAPIKKLVVATGGFKIRKRAWSTI
QGFESFRMLNKGQFDFWLRHDERETLVRERSAFMNRLFNVEVVYQ
>PBPRC0029 putative Endonuclease I [Photobacterium profundum SS9]
MSVFYTANVCGFQKKMEMARVQHYRLEGSPSFTSHINKVRKSIVKRILFI
VGLLLAFNATAANLHIESFSKAKKTLEKNVYFDHRTTLYCGASFDTKKNI
TPPPGFKSDKYVKRSKKVEWEHVVPAENFGRTFIEWRDGDTQCVNNKGKA
YKGRRCANKASKEYRLMQSDLYNLFPAIGSVNAARSNYNFTMLPAEPADF
GSCQVKIDNRKAEPPIAARGRIARTYLYMEQSYSRYRMSKSQRQLMAAWD
KQFPVSAWECKRAERIEKLQGNVNNVLKTRCH