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Gene list

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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: pRFdelta

Number of genes found: 12

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# Rickettsia felis URRWXCal2, URRWXCal2; California 2

>RF_pd66 Site-specific recombinases
MAKVGYARVSSLGQLLSIQLDKLKDCDKIFQEKKSGLDGTRSALKNALDY
VREGDIFIVTKLDRLARSTAHLCKIAEILNQKSVALKVLDQNIDTKDATG
RLIFNVLGAIGQFETEIRAERQIDGILKAKERGIQFGKKQYLTKQQLNDL
KEKRKQGIKIKNLMQEFNLSKASIYRYLAQEV
>RF_pd63 unknown
MGGSNAADRVNWSQLQFQWRDAIIWPDNDQPGFKAAEVIKDKINKANEHI
GFVSVVDPRRLQFGGSTHKDLLPEKWDQEKSSHYIKYLEATGKGGVAHDY
LKYDSIMYQDILTSLAMRDERLSKSIKELSDSNNTSDIETIEHRTKLIDD
TQNLYEKKALEYSGIAGTNVVYRGHLELMVKNYGESHEKVT
>RF_pd60 hypothetical protein
MSVGRKNWLFAGSDSGGHTASIIYSIIKTAKLNHINLWKYLQKVLAIIQD
YRANKVEDLLPWNILLD
>RF_pd58 Transposase
MVGIDIAKRIFQIHGVDKNGNTVLKKKLMREQILTFMANLPKCLVGTEAC
GGASWAREITKLDHTVKLMAPQFVKPYVKTNKNDQADAEAICEAVADQI
>RF_pd57 Transposase
MRFVPIKTVEQQDILSIHRVRERLIKNRTALANEIRGLLHEFGFIIPQGI
NKVMTKLTEILDEGNLSQLGYQTFSELKEEFLDNNKKIKEIEKRLKIITS
NLTQYQRLTTIPGLGLITATALIASIGSATNFDNGRQLSAWLGLVPRQHS
SGGKDKLFGISKRGDVYLRTLLIQGARAVLNAKIRFTSEEQKSKKDFSKF
TQWMFNLSERSGHNKTTVAIANKLARVVFAVLRSGDDYVESKVCS
>RF_pd53 DNA polymerase III, epsilon subunit-like protein
MIRLKFLEEVDIIIAHNAAFDRPFFDKMFPEVITKVWGCSRVDIDWKAEK
IESHKLEYLTYKYNFFYEGHRAVIDCRAGLHLLAQTLPITKTLVLKQLLN
NCHKTRFNVWVHNAPYDSKDLLKSRGYRWSINPQANYKAWMIEVFEDTLE
TELTFLNSNVYKTPYNIPVQTINPCDRFMG
>RF_pd55 Transposase
MCKFLKGYIKENITKRGITMPQKQNAAMNQAIDLLINNDTDVSTLFKEDG
LLKELTKHLVEKALQSEMNNHLGYSKYNQSDAQNSRNGYNTKNLITKNGA
VEIEVPRDRNSSFEPSLVAKRQRRLDGFDDKVLSLYAKGMSLSDIKLQLQ
ELYGADVSESLIVGLQMI
>RF_pd67 Transposase
MDYSYNFISLEASNVLRDWLLEFSFIYEITKNRYCANYGRPSIDPVLFFR
MQIISYLIW
>RF_pd48 Transposase
MDMAIEYPAYGQLRVSNELKKSGILVSPGEVRSIWLRNDLNNISKRLKAL
EAKMAQDGIVLTEAQLQVLEKRRNEKEAHGEIETQHPGYLGCQDTCYVGN
FKGIGKVYSQVFIDSYTRVVDAKLYADKTAITAADMLNDRVLPWYETQGI
PMLRILTDRGSEYKGNIEHHAFELFLSIEGIEHTTTKAYSPQTNGMCERF
NKTMKQEFFDTAMRKKIYTDLDDLQLDLDIWLEHFNNERLHSGKYCYGKT
PMQTFQDSKKLAIEKNNEILYLEYSSDSQNLTDNQVQNL
>RF_pd54 Transposase
MVVKVRQDKRIINKSVYVALGIDLEGRKDILGLWISENEEAKFWLGNFTE
MKNRGMQDILIACSDNLNGMSEAIGAVFPKTEHQLCIVHQIRNSLRYVSY
KDRKELAGDLKPIYTANTEKEALSALEAFESKWSKQYPQIAKSWYIHWDN
LMILGYPEEIRKIIYTTNAVESVNSQLRKVTKNKRLFPNDNAVFKSLYLA
IDYMTKKWSMPIPNWNAAMAHFLIKFEERI
>RF_pd39 Conjugative transfer protein TraA_Ti
MERSRSKRKRADSRTASEIEFSLPREVSKELNISLVEKYVNEYIVARGVV
CDVNIHYDNPDNPHVHIQYLTRKLERLENGEVVLGKTKNRELESTKFLYF
LRDRCEIEINKVYEEAGLPYRVTAKSFETLGIDQIPKLHIGPAHHMPATE
LEAKNKEIIAENAKKIYESPEIVFGRISYTKPVFTKEDIAIALSDALMVH
LVSKGSDIAKEQEAIRAFGKGLVNEQAGDGNTEQNIVNDAVGTAAGGGAE
NTDSSQVKETTNNPAIEHLNKEYGEEFLRLYNQLLVSDKIELMDQKDLMG
RTLYSLKSRVNLERRYVSAIEELNTKGEHKLNILDNTIGERNSLKEQIGD
LVNVVGANLQNKFNDKLGSGLGLKLNVFGSKKHAFSDEQIKAILSVCSGS
DISVLEGNPGAGKTFVMKEIVRQYKAAGFKVVGTGPSSVSAKVLSRNAGI
KADNTSLLRKKIVESKGGDFKIDLSSKYYEEEEYLKSIGCDSILNFLRSD
VLDSKTVLIVDEASMIELANMDYLAHEVLRSKAKLVLVGDNNQFTAVGMT
GAFNKARKIAGGVKLTEVRRQERVEYRQATRAMGRFAMQEAIEIYRKLDV
FNIKDNEQEAKTSLVTSFAKEYTEQIDNLKRDDLIAIRSIAIGAYTNEKV
ADNTRVRSELKHSGALKGTEVQISSGGRMLSLMKGDRIVFEENSLRYGIS
NGEVGTILSVKPSVKSFSGGASSKGESDGDGLLKILVHKADGSKDIINID
TASDAANNKWRIKLNHGYALTGYKLQGETVDRMHVYFDRSIGYEAFLVLM
SRHREEVKLHASAEELENIVYQRLDSDVEKVRNQFKINSYEMRDETRINS
AGEEYTVQVKEEIPNWLIGLTLAVSRRANNSFAIDYGKGGTLEGSQLIIK
EYLEARG
>RF_pd64 Transposase
MTYSMSWIILNEKLMAKAYSYDLRIRVIKSLTEGKTIKETSEIYSISRKT
IIEWKELKKQTGDVKAKSGYHTGHRRIIRDIEGFKKFIELNFDKTTMELA
NN