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# Treponema pallidum subsp. pallidum str. Nichols, Nichols

>gid:10388  TP0001  chromosomal replication initiator protein (dnaA)
MDAVGYEVFWNETLSQIRSESTEAEFNMWFAHLFFIASFENAIEIAVPSD
FFRIQFSQKYQEKLERKFLELSGHPIKLLFAVKKGTPHGNTAPPKHVHTY
LEKNSPAEVPSKKSFHPDLNRDYTFENFVSGEETKFSHSAAISVSKNPGT
SYNPLLIYGGVGLGKTHLMQAIGHEIYKTTDLNVIYVTAENFGNEFISTL
LNKKTQDFKKKYRYTADVLLIDDIHFFENKDGLQEELFYTFNELFEKKKQ
IIFTCDRPVQELKNLSSRLRSRCSRGLSTDLNMPCFETRCAILIKKIQNY
NSTYPHKAIHISDDVVRLVSENISSNIRDLEGALTKIIAFIEVSGSITID
IVPSLLKEFFLSARPKHITVETILHVVADHFNISYSDLKGKKRNKSVVYP
RQIAMFLSKELTELSTTELGIEFGGRDHSTVIYGCQKIEGEILTNPSLQA
NLDLLKSKVQDSIR
>gid:10389  TP0002  DNA polymerase III, subunit beta (dnaN)
MKILCEKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTK
VTFETSIPVNVLAEGTTTVFCDKLVNVVSALPTKEIELTLCEEQLVITPP
NKKISFQLRTLSHESFPCFPQNEGGVSLAVPTSDLRNMINHTVFAVSEDS
TRHFINGVHVDFQYGNIICVSTDGKRLAYIEKKGESSPQSFSGVIVPTKI
LGIVNRKLTPEGSVTLCITSQHVYFFFGGYKFSSVLIEGQFPNYKRVIPD
HQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSSKAHTQE
NEIGDAQEEIACAYTGESEVIALNYLYLEEPLKVFTSKEVQVEFTDPAKA
LTLRAVPNTDCFHIIMPMQTE
>gid:10390  TP0003  recF protein (recF)
MKNRLRFLLRRRFKWNLPILQKHSRFVLYQTRTAFTSLCLCKRSDSLPFL
TVTAINFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRT
RTESELYATHARSNEYRVKVMYRGEYTHTVQIFSKNGKKRIEKNLKKIRT
KKELISSIPCILFFHNDLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKY
HALTKTKNREIKEKRVQLLDALDTQIATVGFDLVQWRTQLVRDFNVIFTK
YYERLGDLAQVRIEYKPSWSDSSVEEIVHSLYKRRKHDLAMGMSMSGPHR
DKIHFTRSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVTGKLPVLLMDD
VLLELDPEKRERFMMSLPPYDQLFCTFLPGEAYRRYGREKTRVYFVSEGA
CHE
>gid:10392  TP0005  DNA gyrase, subunit A (gyrA)
MEEISTPEGGVLVPISIETEVKRAYIDYSMSVIVSRALPDVRDGLKPVHR
RILYAMEEKGLRFSGPTRKCAKIVGDVLGSFHPHGDASVYDALVRLGQDF
SLRYPVIHPQGNFGTIGGDPPAAYRYTEAKMARIAESMVEDIKKETVSFV
PNFDDSDVEPTVLPGRFPFLLANGSSGIAVGMTTNMPPHNLREIAAAISA
YIENPNLSIQELCDCINGPDFPTGGIIFGKNGIRQSYETGRGKIVVRARF
TIETDSKGRDTIIFTEVPYQVNTTMLVMRIGELARAKVIEGIANVNDETS
DRTGLRIVVELKKGTPAQVVLNHLFAKTPLQSSFNVINLALVEGRPRMLT
LKDLVRYFVEHRVDVVTRRAHFELRKAQERIHLVRALIRALDAIDKIITL
IRHSQNTELAKQRLREQFDFDNVQAQAIVDMQMKRLTGLEVESLRTELKD
LTELISSLEELLTSPQKVLGVVKKETRDIADMFGDDRRTDIVSNEIEYLD
VEDFIQKEEMVILISHLGYIKRVPVSAYRNQNRGGKGSSSANLAAHDFIS
QIFTASTHDYVMFVTSRGRAYWLKVYGIPESGRANRGSHIKSLLMVATDE
EITAIVSLREFSNKSYVFMATARGVVKKVTTDNFVNAKTRGIIALKLSGG
DTLVSAVLVQDEDEVMLITRQGKALRMSGREVREMGRNSSGVIGIKLTSE
DLVAGVLRVSEQRKVLIMTENGYGKRVSFSEFSVHGRGTAGQKIYTQTDR
KGAIIGALAVLDTDECMCITGQGKTIRVDVCAISVLGRGAQGVRVLDIEP
SDLVVGLSCVMQG
>gid:10400  TP0014  T. pallidum predicted coding region TP0014
MRLRRLQIPQESGVEGARAFIGTHTKQWIGKYGKNTMFFCTNDTHRVSLM
RELVSKDGMLLGANVFDCAEALGVEYADDEDVSGILERVESAVEEKRLVG
RFGVNVSSHIFVSTLGLTEYARRILQNELREKDMRVALSDAFSLFSKGTR
WRVAPYTDLLTGKEVSNHVSVFSDIHILGKFSLPVTDQEFPEKYRSIRFG
RQ
>gid:10449  TP0058  replicative DNA helicase (dnaB)
MPGMPNPTQELKGKIPPHNLEAERAVLGAVLLDDSALSTATEQLSASSFY
SAAHQRIFQALVELSDLGQRPDILVLSEHLRSCEALDFVGGSAYVASLTD
AVPSAANVEYYTRIVCDAAMRRSLLKVARIITAEAFNDTVSGNIVLETAQ
REIYDLTNARRVATFKLLKNLIPDLVNTIETRYRNQSDLVGIATGLTALD
NLTGGFQNSELIVIGARPSMGKTALAMTMASNIAIRQRIPTAFFSLEMSN
LLLMQRLIAAESGVSATNLRKGLLQLSDFGRIQNAAGEMYDAPLYIVDVP
NMKLLDLRAVARRLCVQEKIQIIFVDYLGLIVADNPFAPRYEQFAAISQS
LKSLARELDIPIVALSQVGRPAEGSAPNLADIRGSGAIEQDADVVMFLHR
DRNETETQLILAKQRNGPIGTVELEFQASFTRFVCKSP
>gid:10453  TP0062  single-strand DNA binding protein (ssb)
MADVNHVVLVGRLTRDAELKYTSAGGALCRFSVAINRRRKSGDDWVEEVN
FFDIVLWGRQGEVISQYLIKGKQVAVEGELRQSRWEQEGQSRSKVEISAT
NVQLLGSVLGGAARAEDGEFSSSRVAAESTAGRVRGTSSDSRSPTGDILG
EKRGLDATSSLDEADFSSSDLDTVPF
>gid:10456  TP0065  conserved hypothetical protein
MLKNHVLRCPDGPIRPAMDRMRESLFAILGDMRGCSFLDLFAGSGVCGLE
AYSRGAYPVVFVEWNVRSFSVLLQNVQVALCRLECRCMAVERYIARARTL
FHFVYLDPPFPYRFHAELLQRLSRASLCREGSVVMVHRPREKKLADKIDS
LVRTDQRVYGRSVVDFYRRIKPVLRRTETRCRILLFFVRGDAEGA
>gid:10493  TP0102  rep helicase, single-stranded DNA-dependent ATPase (rep)
MLSTLNPEQRRAVTTLEGPLLIIAGAGSGKTRVITARIAYMLECGILQSR
ILALTFTNKAAHEMSERIKALTGKPLRNTTVSTFHAFGVTILREHIHVLG
WRKNFSIYDENDKRALIREAAKEVHLLPEVLDTNCVSTLFSAIKMQRKNL
KELQHKERALWHEYHTALKLFNAVDFDDLIVLPIQIFSEYPDILASYKSR
YHYILVDEFQDTSAQQYRLMKMLATQNICVVGDDDQSIYSWRGAHHDNIL
SFEKDFPYATEITLEQNYRSTGTILAAANGVIAHNTQRKEKALWSGNDSG
KPIEIFNPETERDEAIFIANTILAEQIRASYSFSSFGVLLRTNSFMRIIE
DVFLQENIPYRVSGGMSFFQRKEIKDVLSYLRVISNPDDDVNLLRIINTP
RRGIGKKTLHLVSDIANTQQCSVFNALNQIINKTHAVDLKESHRTAVENF
LQLITQARTHLLSGKNLAYKVRKFVEDIQYFNYLIQEFQKNEHAARFKFL
QIEHLVESIEHWEQSSEHGSLYDYLNRVTLLARDNVQKETEGAVSLMTIH
ASKGLEFPVVFIAGVEAGTIPHERSIEEVHSIEEERRLFYVAITRAKEKL
YLTHCRTRKRGGKREERTASPFLDEIPKHLVRAHAPEGKISEEEVTRAFT
RIKKLFT
>gid:10494  TP0103  ATP-dependent DNA helicase, putative
MGNTSDWVEMDGLRYVYAAQGAAPMPAPTDNPACDAHMSHDVIARTAQAV
FGIRALFPWQRLVIANILDAAHACTHTTPFAAAGSSQTDATRVTHVDDAQ
PEDNFVGAMQDTRFDQDGVSRAHQVVLLPTGAGKSLCFQVPALFLEGPTL
VVYPLLSLMRDQCRRMQAVGFSVILLRGGLNAQERAYMYAQLDRCAEAYG
RMRGVTPPAHQTAEFSLADSISFDASLFSDDVSTFSKVVHVDERLAQKRT
ESRRGVCIIASPEILTQPALRARVRACRVAHLVIDEAHCVSEWGDSFRPD
YVRLGELVQDLAPQVVTAFTATASQTVLARIMEVLFGGRAHVLQGTVDRP
NIRYTVRTVLCKQTALTQLVARCVRPAVIFCARRVQVERVAHHLRTCLSD
TQIRFYHAGLQREEKETVERWFHTHDSAVLVTTCAWGMGVDKPNVRTVIH
VDAPLTVEAYVQEVGRAGRDGMRADAFLLWSPRDARSIETLPHAQRVRAH
VLRHFAESGRCRRAVLLESLGEQNVCAGCDVCAGTARFVCEDVEALLQFL
KKNARRFTVSSLVQHLALHQKVLSVADVRALLYYALETGRVKKKHSLLWG
DVLYVAR
>gid:10496  TP0105  DNA polymerase I (polA)
MQEKKTLYLLDAYGLIYRSYHAFARAPLINDSGANVSAVYGFFRSLHTLL
CHYRPRYFVAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILC
ALGITVLRHDGFEADDLIATLAKRVAAEHCHVVIISSDKDVLQLVCDTVQ
VLRLDIDHKWTCCDAAYVQQRWTVMPTQLLDLFSLMGDSSDNVPGVRGIG
PKTAAHLLHCFGTLDGIYRHTYSLKEALRTKIVCGKKDAFFSRSLIELRD
DVPCVFSLEDSCCIPLDVTSAARIFVREGLHALAQQYRACVQEIDTEATN
DTLQMTESSVLTSGRCANECFLSQVEGRASTPEVNSVLKSELKTSAVSGA
IPIENRDLRQDVMLARSAGHYRGVTDPVELKRIIDCACANGVVAFDCETD
GLHPHDTRLVGFSICFQEAEAFYVPLIVPDVSLHTESTQCTCARSTNVET
EKECTEQHGVSASAVQDPAYVQAVMHQLRRLWNDETLTLVMHNGKFDYHV
MHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEE
VVAKGQTFAHVPYECAVRYAAEDADITFRLYHYLKLRLETAGLLSVFETI
EMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEHDIFSLAGHEFN
IGSPKQLQTVLFQELHLPPGKKNTQGYSTDHSVLKKLARKHPIAEKILLF
RDLSKLRSTYTESLAKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPI
KSTEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHI
DIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQ
KEAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSR
NTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVH
DELIFEAPAAETAIVKEILFAEMEHAVELSIPLRIHVESGNSWGDFH
>gid:10510  TP0116  excinuclease ABC, subunit B (uvrB)
MKEFKLHASFQPAGDQIAAIDALVRGLHAGARFQTLKGVTGSGKTFTVAN
VIARVQKPTLVISHNKTLSAQLYREFKGFFPDNAVEYFVSYYDYYQPESY
VPARDLYIEKDASINAEINRMRLSATFSLMERRDVIVVATVSCIYGLGLP
ESWRDLRIHVEVNQCLDLEDLKRQLVSLQYERNDAVLECGRFRVRGDVIE
IFPAYLEEFYRIECDWDRVVRIRRIHPVSGAVLREFEELTVYPAKHFVLK
EDAIPRAMDRIRQELDERLVQLTQENKLAEAARLKTRTEYDLEMLGEMGY
CHGIENYSAPIAGRKSGEPPVTLLHYFPKDFVLFVDESHVTLPQLGAMYE
GDRVRKQNLIDFGFRLPCARDNRPLKDSEFEALLNQAVFISATPGVKERT
QSVQIVEQLIRPTGLLDPCIEVRKTDGQIEDICQRVKACSARNERSLVLT
LTKKMAEDLTDYFNGLGIRTKYVHSEIETIERVEILTSLRAGECEVLVGI
NLLREGIDLPEVAFIAILDANIVGFLRSTTSLIQIIGRAARNARGTVVMY
ADAISDAMREAIEETARRRKIQMAYNRAHGITPRTIKKSIEDILVREQEV
KKDAARVQVAPLLRAADADVRTHAARKKMVQALRLHMKVCARELRFEEAA
LIRDKILQLQRQDEQNGV
>gid:10519  TP0125  exodeoxyribonuclease (exoA)
MRPVQRIISWNVNGIRAIERKDFLSWLAREAPDVLCLQEIKAHESQLSAA
LRAPVWSAGAGGTYYTYFHSAQRPGYSGTALFSKRAPDAVRFFGVPAFDC
EGRMLAARFGELTVVSAYFPNAQEGGKRLAYKLDFCAAFRAFCDEERTAG
QHVILCGDYNIAHKEIDLAHPQENEGNPGFLPQERAWMDTFTEAGYADSF
RAFCTEGQQYTWWSYRARARARNIGWRIDYQCVDQAFLARVTSSQILSEV
TGSDHCPVCLTYAD
>gid:10536  TP0141  methylated-DNA-protein-cysteine S-methyltransferase (dat)
MSVHQGGIRFPLLYLEMETPLGRMCIAERAHTIVYVWFHRVGPRGSPVSG
VCAQHVCPGKTALLRETQSQIHAYFCGALREFSVPVTVEGTPFMQRVWGA
TRNIAYGTTKSYAQLSQDIGCPRAARAVGQALHRNPLLLLIPCHRVISAR
ASIGGFAYGSALKHFLLQQEAAVCACE
>gid:10557  TP0162  Holliday junction DNA helicase (ruvB)
MDHTASLSPVRPEAQPTDDRERALRPRLLKDFLGQEKTKRNLRLFIQAAR
DRNESLDHLFLIGPPGLGKTTLAHITACELGVECKVTGAPALDKPKDLAG
ILTALSERSVFFVDEIHRLKPAIEEMLYIAMEDYELDWVIGQGPSARTVR
IPLPPFTLIGATTRAGMVSSPLISRFGIVERFEFYTPEELAAIVQRSARL
LDITLDARAALALARCSRGTPRVANRLLRRIRDFAQVAGSAHISETIVRA
GLAHLKIDELGLELHDIQLLRVMIEHFGGGPVGAETLAISLGESPETLED
YYEPYLIQIGLMQRTPRGRMATARAYAHLGLPVPEARTLTPHSPEQGTLL
>gid:10628  TP0229  DNA polymerase, bacteriophage-type
MQGSGTVMYAVYGRLSPMHAGDRESIARFVRVVRDCLDLFRTEGIGPRPR
NDSVILPNAACSPRNHAGKRAQSTADACVRSSDGSVYTDETLREEIFACR
ACELYQRRTHAVVGEGVADADVLVVGEAPGAEEDRSGRPFVGRSGKLLDA
MLAAIGLSRQQNCYITNVVKCRPPRNRTPTPHETACCARFLHAHLTLHRP
CAILVLGRCAAQHMLQTTDGIGKLRGRFFTYQGIPLLATYHPSALLRDEA
LKRPAWEDLKTFRARLLQLKQDAHMPI
>gid:10629  TP0230  primosomal protein N (priA)
MAPWLELVFDVPLDKSFTYRACAAHAGEALVGRRVLAPFGARTLIGFVIS
ESHSSPADCGGAVGTFKEIIRVIDREALFDQTHLACARWMAHFYLCALGQ
ALCAVVPSRKRERTLSSFASCAGVRRTDTYALSGEQRKAIDAITASTGAR
SFYVHGVTGSGKTEVFLRAAEAVLARGKSVIYLVPEIALTHQVLQEVYVR
FGSQAAVLHSALSGSQRLGEWRRIQCMRHCVVIGARSAIFAPLKRLGLVI
MDEEHDSSYKSAHVPRYHARQVAMYRCADANCPFVMGSATPSVEAWYAML
RGAVRRLPLTARVAGGAPPRVEVVDVSKEALLLSTRLVDEIRKTKEAGYQ
SMLFLNRRGFSYSFQCRSCGYTLCCTQCAVPLTWHKRVGAMQCHYCGRQE
APPESCPCCHSFDTRYGGVGTEYIEEAVQALFPEYRIARVDTDALRSGHV
QQTMEQFRAGKIDVLLGTQMIAKGFNFPTLRLVGIACADTGLHTPDFRAA
ERSFALMMQVAGRAGRYVDNGLVIIQTRNPAHPAVVCAQHGDCESFYAQE
LAQREALCFPPFVRLIRFVFRSKTRRKAKDAAYAAHALLTAQMPLGADVL
GPAACVVAQVAGSYRMQILLRAPSFPVVQQVARSFLDEFRAPAGVYVESD
VDPVNVL
>gid:10652  TP0251  DNA-binding protein II
MKRVRRTRSFVVDALCDEVDLSRRHVARVVDSFVSVVTAALERGETVELR
DFGVFESRVRKASVGKSIKTGEVVSIPSHCVVVFRPSKRLKSAVRGYRSG
EVGAD
>gid:10708  TP0303  DNA mismatch repair protein (mutL)
MACAKRATGAALRQNAGAGCLRSGKGFSMHETSYKPIHRLSPDTAKKIAA
GEVIERPASVVRELLENALDAGATKIHLEINAGGCALIRVSDNGHGMSPQ
DLLLCAEAHTTSKISSADDLLQLRTLGFRGEALASIAAVSRLHLTSTRSG
PLAWHYQPKAAGTAAHVPPVPQGTEAGVLEPASLERGTVVRVEQLFENFP
ARKRFLGRQSAETTLCRSALIDVSLAHHPVEFRFTVDGTHKLTLLSQQTR
KDRCLETQMLKGDPALFHTIEGGDCSFHFHLVLSEPAICRRERRGIFTFV
NGRRIFDYGLVQALVLGSEGYFPNGTFPVACLFLTVNSERIDFNIHPAKK
EVHLQDYAHIRHTLSRSVAHFYRQCTIAHYVRAEPAHAPATQGNAPTHSS
PPCTGVREEPAAPCAHTPRYESLFPLPVQHAHLLPPSPPHISCEHARDCT
HPAPAAEGDAPVHNHTHTGAFKVLGQVAGTFIAVERNNALYLIDQHAAHE
RIIFDTLQRNLGTAQILLIPYHIHPRSDEEARIMHRACTELSPAGFRFHE
EPDGSWHVTAVPLHWRGSEEQLAHDILYSGKNAHDILRHVLATCACRSAC
KDGTILDDATLHSLVEQAFALPQSRCPHGRPIWIVIGRDELFKRIKRT
>gid:10715  TP0310  T. pallidum predicted coding region TP0310
MAAICPSSTAKAGGGGISVDPLNAVIVEGNVVPSASARVPEAAVCAFCIQ
TQRRVQGEGRVHTEVSYFEVEAWDALARVCAQQVRPGVGLRVVGRLKQDR
WQQEDGVRVQRVKIVAEHVEFQTPFVW
>gid:10732  TP0328  DNA mismatch repair protein (mutS)
MRSLASDTPLMRQYHAIRAQHPDAVLFFRLGDFYEMFDSDALHVSTLLGL
TLTKRNGTPMCGVPVHTARTHIARLLKHGKKVALCEQVSHPVPGELTQRK
VIEIISPGTAVEDDFLSQGFSQYLATVCASDATVAFSYLEVSTGAFFITS
FPRAEAADALQKEFGRVQPSEVLLSASVLRSLPELAAILSLYPRLVRTTG
ADALFNPEHTKNRLHHCFRTRNLDCLTLLPHSPDLAAAGALIAYLEETTR
HPLSHVSAITRYHIHDFVEIDDATRKNLEILQNLHDSTHAHSLFETLNYT
HTAMGTRLLRYWLHHPLRSQEEIQKRLSAVVFFHHRPHILKTLRATLSCV
RDVERLVARVALEKAHGRDLLALKESLRAILTFRSLERESPFPPDLLPSE
GDTPVLQELYGLLEQSIKEDCPVTLSDGNLIKRGFSASLDELHRVRDNAN
EILKQYLAEERERTGIGTLKMKYNRMLGHFLEVSKGHLSAVPAHFIRRRS
LSNADRFTTEQLSELEAKLARAREGLVSFEQELFADIRRTVCSHTQLLRT
NAARVAQLDVLQSFAHAALQHGWSQPVFIKDGALRITGGRHPVVELHLPS
GEFVPNDLTLSSSEHAVLPRFALITGPNMAGKSTFLRQTALICLIAQVGS
FVPAEKAELTPVDRIFCRVGAADNLARGESTFLVEMSETAHILRAATRDS
LVIMDEVGRGTATEDGLSIAQAVSEYLLHHVRAKTLFATHYHELSRLAHP
QLEHLKLDVLETDNTIVFLKKVTPGSCGSSYGIYVARLAGLPESVLARAC
ELLKQLQQRAGSAPRASAAHEADAVAQTEAVHAHKAASKPCAQRVSADLF
TQEELIGAEIASLNPDAITPLEALTLIARWKRSLRGSATQQSSAMTKRKG
>gid:10749  TP0343  A/G-specific adenine glycosylase, putative
MVGLSQSAGDIEKFQNAILDFYAQQGRDFPWRSTCDAYAILVSEFMLQQT
QTERVCPKYAEWLHRFPSLESLACAPFAHVLQAWIGLGYNRRARFLHQSA
KLIVERYCAVVPDDPSELKKLPGVGDYTAAAVACFAYNKATVFLETNIRA
VFIRFFFPDTHQVSDRELLSLVRCTLYEENPRRWYYALMDYGAVLKRKIT
NPNRRSKHYVKQSPFEGSLRQVRGAVLREISGMQHAVREKTLFAKLSFEH
ERLSRALDSLVSEGLVVKTEAGYSIAD
>gid:10750  TP0344  transcription-repair coupling factor (trcF)
MRGILHSWNELQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHI
VLVVPTEQDVAAVCTDLAHAAVPTRVLPWWGSLPYRPVSPNAHVFSHRVE
ALCALAQRDATAPCAFVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEIHT
LAAQLMQWGYARVDHVSACAEFSLRGEILDIAAAAQAADNTQAYRIVCDF
NTIERIHILAVSTCAVLQEVSACTLYAAKEILWSEERIAFLHQNLQKLSE
CPAHCVPCIEELTHRKTYEGEEMFYPLCFERPTCVLEYFRHSPSPPSVFY
LDYERQHNGARALQDECRNLYHKMQLAHEHVPARWYPQPEHIVLDFSAVC
ALHLHTVYFTHFFPQLPACESICLASDPARSFFGNIPYFKEELLRLSKDG
WHVFVFAESEQQALRIRALVKGCDVTVLPCALSAGFSIPALKILIVQEGE
IFGRRRKTPQSVQRARSTPIDTFVELNPGDYVVHAQYGIGLFKGIERIKT
AQSERDYVNLLYAQEETILIPIEQAHLVQRYIGNEGNKPHLDSLGSKSWE
TRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYAFEAAFPYEE
TDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQ
VVFLTPTTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAH
GDIDLIVGTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDC
LSLSATPIPRTLHMGMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATA
IRKELDREGQIFYLHNRIENLESVKCMLQKLVPELSICVAHSLMGSEELE
DIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADMYGVSQLYQLRG
RVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDME
IRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERLQHAPNEQRIETVIDL
NYRGFIPHTYIAADEIKMELYKKIAAAHTHEELERIRTETITRFGPIPEE
AAGLFTVAEIKVRCEKLAILSLKETHESLLIEFDKVCDTAFKKILRLVQT
SNDRVRLDAKQPNMLILTSDAIEIKEKGIFICEILKRLES
>gid:10759  TP0353  ribonuclease H (rnhA)
MNAHAALTLYTDGACLGNPGPGGWAFALVPSDVPFLETGQXAPEAAAFTR
SGSAYPSTNNRMELCAVINALQEAHGRAAEAVVVVTDSQYVRKGITQWIH
TWKHNGWKTAAKQPVKNKDLWEALSALADALSVEWRWVKGHAGDPYNELC
DRLATDAARRAAQSTADCP
>gid:10787  TP0380  DNA repair helicase, putative
MTSVPKPLIIQADRSILLDVHAPEAVAARKALVSFAELEKSPEHLHSYRL
TPLSLWNAASAGFSPQMIAQTLTRFSRFTPPQTVLDWVVDIMSRYGKIRL
REDTTHSTLLRLQVRDAHIAREIAASKSLASHLSPTTACLQDGPLPTPDT
ARIAQPDTTPQVQGAQTGCSYDFLLPRLHRGTVKQLLLRHGWPVHDEVPL
REGTPLSLRLRISPASCPPPSTAYPCCHTPGTPSFVPRDYQWEAADAFVG
NRTQGSGFGVVVLPCGAGKTVVGLLVMGLLQTDTLILTPNSAAAQQWKRE
LCEKTDLDGTSIGIYSGECKEIRPVTIATYQILTWRAHADAPFSHFRLFM
ERSWGLIIYDEVHLLPAPLFRITAELQVVRRLGLTATLVREDGCAQDVFS
LVGPKRYDVPWKDLEARGWIARVRCVEVRVTMDRSLQYQYMTAPVRLRHR
LASENEAKVAVVQRLLRAHAGAPTLIIGQYVQQLLHLAHVLQVPLVSGRQ
TYAAREAIYQRFREGTLQVLVVSKVANCALDLPDASVAIQVSGTFGSRQE
EAQRLGRLLRPKICDAHFYSLVTEQTVEEDCALRRQRFLVEQGYTYETLR
VSEVHE
>gid:10798  TP0391  integrase/recombinase (codV)
MKDVDIRVQSFYAYLISAEAHALLTARTYVTTLMLFQKNLDPPCNIESAN
AHDCVRFIEKRSAAGVSGKTIAKDMAALHAFYQFLILEQVRPDNPMQDVD
APRRAYSLPRVLSPEQVNTFLQSIPLCTPGGVRDRALFELIYAAGLRVSE
AVSLSLSDIFFAERLLKVTGKGNKERMAPFGEQACYFLMQYIREARVRFT
SAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSGVETHVHTFRH
SYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSE
GLRDEN
>gid:10800  TP0393  smf protein (smf)
MNTDTVLTETHKIALALSYCHFLKGGERLRVSKAVGSFQELTAWKVRDFE
RVVERHIRTAGAQLSALPHLVRHGIQTMRCYQIKMVFKDDDAFPSWLREI
SDVPFVLFYRGTLPCATQPIVGMVGTRTPTGEGVRNSLAFSKACAESGIA
IVSGLARGIDGFCHKGALAGGGYTLAVLACGVDQLYPRSNSALAARIIET
GGCILSEYAPSEHVMRYRFPERNRLISGLARSLVVMEAPKKSGALITALC
ALEQGRDVYVYEPLLESLQNEGGRLLHAEGARALTCVQDMFDDWEYACTG
RT
>gid:10801  TP0394  DNA topoisomerase I (topA)
MEVRGLQPKRQKTFARKHLVIVESPAKAQTIEKYLGTQYVVRASMGHVID
LPKSRLAIDIEHDFQPEYITVRGRAQCLKELRTLSKQSLQVFLASDRDRE
GEAIAYHLAQSIQAYCDTPIKRIVFNEITPHAIRAAIGHPVPIDTAKVNA
QKARRVLDRLVGYHLCPLLWHKVKNGLSAGRVQSVALRLICEREVEVKRF
VPEEYWTVEGTFEKDKKSFSALLILIQGKKAVFKSKQEATSAIGLFSQSE
ARVSQIRSFEKNVRPKQPFTTSTLQQCAANRLGFTSRKTMQVAQQLYEGV
SLGTHRVGLITYMRTDSVRVSEAAVKEVRAWIATHFSDALPGTPNRYAAK
GKSQDAHEAIRPTYVAHTPERIKAHLTRDQIRLYTLIWERFVASQMTDAR
VRSLTFEITAGPAVFSATETQVIEQGFYRVLKMLSPKDLSKAVLPPTKEG
EVVALHNVQSVQHFTQGPVRYTDASIVKMLEEKGIGRPSTYAPTISVLLD
RYYVTRIQKQLMPTPLGKVISDLLTTYFHDVVDVSFTARMESKLDEVEED
KIKWNCVIADFYPAFSEKVSTVMKDLNSMRGVFDEKTDVVCSQCGDTMVK
KLGRFGFFLACGKFPECRNTQPVPLAKCPRPACDGNIVGKKTRGRKEFYG
CTRFPVCDFVTHFKPTFAVCPQCRCFLVEKSNRRVGTYTACVNPECRYVS
PTRKNLSLGKEAVLDGSHRGAQDKGAVQHYE
>gid:10802  TP0395  integrase/recombinase (xprB)
MSNEQFTQYLEYLFRVRRLSAHTVSAYARDLNLFERWLQHAQRACARVTV
SDMRLFVCELGRRGLSAASINRVLSVVRGFYVFAKKKHWCADNPARLVRN
IKGPSKLPRFMFPPQAKAFYTLPSRTDILWQERDAALFAMLYSTGCRVSE
IAALSLKDVHPHLSSAIVRGKGDRERTVFIAPFAQNFLHVYMQARAQRCA
RYASCTPALFVNQRGRSLSVRGIQYLVSRYVLLAQDVHALSPHAFRHSFA
STLIRRGADVRVAQELLGHASVSTTQRYVHVTSEQLQDLYHRAHPRG
>gid:10849  TP0442  DNA repair protein (recN)
MIEQLSVRNVALIQSLALEFGAQFTALSGETGAGKSMILGALSFLCGQKV
GPDLIRKDENEAWVSAVFRCDHAPRAVHTWLAERSIEPEHHRVLLRRVMR
RTGRGTAWIQNVPVSRADLEFFTSFFIDLHGQHEHQSLFRVAEHRRFLDT
YGGLQQEVDAFTACYAALAERRAQLQRLASCEHNRQERLEFLSFALEELE
HAALDVHEERALEGEEQKLCQHEKLCDVMQRVDAAIRGVDLQEGALLSSL
KKALGALESACGIDGSLEPARARLESAYYEIEDVAHVLRTYTDGIQFCPD
RLQHVQERLALIYRLKKKYGGTVAQVLEYRARAQQEMQDLSQAVGDKEAL
EQDVQRLMAQVLHAGRALSLKRHAVAEAFRTRVEGVLHRLGMASTRFHVQ
ICTRDEQCAKQRTGPYGFDDVEFLISANAGEPARPLAKIASGGELSRVML
ALKTVLSSVDEVGTLIFDEIDVGIGGETARAVAEHLQALSEHKQVVCITH
LAMIAAHADAHVCVKKESSGEHTNTSAAHVVGERRVQEVARMLAGDTHSA
TSLAHAQELLRAGARQRRGECGD
>gid:10879  TP0472  excinuclease ABC, subunit C (uvrC)
MRPSESLVETLRIQALSAPSTSGVYLWKDVHGVVIYVGKAKSLRTRLTSY
FRCRHDPKTRVLMSRAAALEYLQTQHEYEALLLENTLIKKHTPRYNICLK
DGKTYPLLKLTCEPFPRIFRTRQFCQDGARYFGPFPDVQILDSFLKLILR
TYKIRTCTTLRKRKNPCLYYHLKRCDAPCCGWVSPRTYQKDIHEITLLLE
GNIDATVARLEKRMKRAVRQEAFEAAARIRDDIQAIRCITHKSLVQDMDE
RARDYIAWSSTGAIVTFAVLRMRGGKLNGRELFRTRSLKNEEEILSEFLI
TYYSDHTIPPHLFVHSSAGLAEHWLSHKAGTQCTVTLIPLHTFPTPQTPS
STVTTNAPTLAASQNSNAVQDSGLRSCSETSTMHTLQKAHDACTASEGTR
ENTPHESAHTPHHRAILAMAQLNAHEDITRYLKNRGADDALKELQKQLHL
ARIPTLIEGFDISHLGGKYTVASLICFKNGAPDTKNYRLFNLRAHDTRID
DFASMREAIARRYTHTPEGYTLPDLILVDGGIGHVSAAQHVLDALGLSIP
LVGLAKRAEELFIPNSPTPLVLDRRNPALHMLQRIRDEAHRFAITRNRHL
RTKKELVLSFERLPHVGKVRAHRLLAHFGSFRSLQSATPQDIATAIHIPL
TQAHTILHAATRSTTAPVREEYKEHEHDPQGESPGPGRKTD
>gid:10901  TP0492  DNA primase (dnaG)
MARISAHVIDAIADRVDLVSLVGNYTHLERRGDDWWGRCPFHHERTPSFH
VVPDKKMYYCFGCGVGGSTIKFFMEIEKIDFHEAAVRLAKRAGIEMSFED
GVHAPSAHASFTMQLCEVYQRIAETFHHVLMHTAQGARARAYLASRKVTD
DSIRTFKLGYAPPDPVWLFQFLRHKGYSPEFLARSGLFAKKSERIAVFSD
RIMYPIADRYGQVIAFGARALGTAPAKYLNTADMPQYKKGEHLFAFHCAL
SQMRKTRAAIICEGYMDVIAFHQAQLTYAVAPLGALLTKSQARLMRSFVD
RIYMCFDADGAGRAATYKAILLCRSLGFEVRIVELNGGTDPAECACIEGE
DALRKSVERSTTDAQYLIRCARHEHSHLGADDTSRAVSFLFPYLSVLDSA
IQREQVMQDIAMAFGIRIQAVHADYLRYVSRTTQKGTTGNCVLSVQGTAI
QVKEPATGVRTAQLRLVLAVVANPELFELLRESVCADDFEDPMAKELFII
LEECYRADTRASPHVLSCCTTDELRKLVSEAIVCGEFSCNAPQIVRDGVA
LVRRNRLLKERESLVGRLRRFGDASSGEECGSMQELMMEKQRVDEELERL
KGVRK
>gid:10926  TP0514  excinuclease ABC, subunit A (uvrA)
MGSAARNLCIKGAREHNLKNIDVMLPRDALVVISGLSGSGKSSLAFDTIF
AEGQRRYVESLSAYARQFLGRLDKPDVDSIEGLSPAIAIEQKTTQRNPRS
TVGTVTEIYDYYRLLFARIGRAHCPHCAREIKEQTVDQIVDTLMTVPSGS
RIQLLAPVVRGKKGTHHKVLEAARKDGFVRARIDGALLHLHERISLDKQK
KHSIDIVVDRIQLSDTVRKRLTESVETTLGYADGLLTVLVQGENSGTVSG
KIETSALLPSELFFSQKNACAHCNVSVPELQPRLFSFNAPFGACPSCAGL
GIMQTFDLDRIVPDQNRSFNEGAFLPFKPEHEWNRVRFAALAEKYHFSLD
DPVRNLSKHALDIILHGSGSEALEFSHERKDGSRTARYIKPWPGIFSELH
RRYAESCTHSQREVYERYLSVRTCEACRGMRLKPESLAVTIEKKNIHALS
ALSVDDSCEFFKTLHLTEVEATIAQQILKEITDRLEFLQNVGLGYLTLER
AAATLSGGEAQRIRLATQIGSRLTGVLYILDEPSIGLHQRDNERLIQTLL
HLRDLGNTVLVVEHDEQTLRVADYIVDLGPGAGVHGGYVVAAGSPPEVMQ
VQASLTGQYLAGAITLPIPAVRRTGNGNVLTVHDVHEHNLQHISVRIRLG
TFTCITGVSGSGKSTLLIDVLYPALYNRVMNGRLPEGKFSSIEGTEHLDK
VIYVDQSPIGRTPRSNPATYVGVFTDIRMLFSQVPEAKMRGYKPGRFSFN
VPGGRCEHCKGDGVITIEMNFLPDVYITCDVCHGTRFNRETLAVFYKGKN
ISHVLDMTIEEARSFFSAVPPIVRKLEALCSVGLGYVRLGQSALTLSGGE
AQRVKLALELSKRATGKTLYIFDEPTTGLHFADIIQLMEVVQRLVDQGNT
VVMIEHNMDVIVQADCVIDLGPEGGMHGGTIVAQGSPEAVSQITESRTGW
YIKEVLCKKT
>gid:10929  TP0517  Holliday junction nuclease (ruvC)
MHAQNVDIAPGSTSTVSIIVGIDPGLESTGYGVIEAGGGSLRCLTYGVIV
TQSNQPSAARLRHIFDTLQQVISIYQPQYCAVETIYFAKNVTSALCVAQA
RGVVLLAMAQQHISVAEYAPNAIKKAITGIAQAEKRQVQHLVKILLNLKD
IPHPDHAADALAVAVTHVHCCMSSNYAVGSTRSRGAYVTLYKKGKR
>gid:10932  TP0521  DNA polymerase III, gamma and tau subunits, putative
MFENIVGQPATDLLRDDVMHARLPAALLFVGPPASGKLTAALELARVLSC
TQGGVWQCPCAPCVQHTELLSPELLVMGIKDLILEIRASARAYMSVHTQG
TRYLFVRAVRKLITRFDERLWDSDDTRFSAAVSSIAELDQELASLPAQGD
RRTTPEQKERVQRICVIAERLQQESLYTQLPVQQIRNAIQWVRLTPSGRK
KVLIIEHAHAMHESARTAFLKILEEPPRDTLFILTTATKYAIMPTVLSRV
RSYSFRERSVELQCAVITRVFHDRPTDAKNTQGVLLHYLYQFLSFSLEEV
QTSVMYFWLYVCQHARCIGRIIPDTWVSVGTQPQVSGMDLTSLDSTLHFF
QAHKQQHAVSLFFSLLVRHMRTLQRTTEYSARNTECFAHIAHCIEQAHRN
VQLWNLTIQGTLEHLAHTIANHL
>gid:10937  TP0526  ATP-dependent helicase (hrpA)
MFSYKQLPVYSQKDKILSALAHHHVIVVESPTGSGKTTQLPLILHEAGYN
EGGAIGVTQPRRIAVLSVSEFIAKQVLHVQPGIVGYKMRFEDHTDVETKI
KVMTDGILLQEMKLDPLLSKYSIIMVDEAHERSLNIDFILGLLKRVLQQR
HDFRIVISSATINTAMFSRYFNECPVIKIDAVAYPVTVIFDPPDTPASTH
TKEAEAALLEKIVCIVERVIASRDKGAILIFLPGERSIKNCITRLSHERW
FRKLFLLPLYGRLSKEEQEQVFNRAPFGKRKVVIATNIAETSITIDDVTT
VIDSGLVKLNSYNPLSYTASLDETPISQASCNQRRGRAGRVRAGTCYRLY
SRDDFEQREPYTLEEIYRTDLSEVVMRMAELGIHDFEHFDFISPPGTHGI
IGAEDTLRLLGALEDDRSLSEIGKMMCLFPLGPRQSRMIVEALRRYPHSI
DDVLIAAAFLSARSPLIFSEDQEEKTKKAHGTFSDPMGDFVSFLRIYRAY
AQENNKHSFCQHFYLDERIMAEISNIKEQLELIVSGMGFPLLTGGTVEEY
LICVGTGMIQFVCVQEHRDSYRSLTAECIHIHPGSCVYKDRPKFIVAGEI
VRTSRMYAMSVSPLSKKIAELIAPALLERRGRAEKHGTSPTRAAFLKKST
LRKGPRKRRVRVGRASLR
>gid:10954  TP0543  Holliday junction DNA helicase (ruvA)
MFESISGILTLHERERLCVEVHGIEWEIAVSAYSSAAFGEVGSHVKVFTW
LYHREDALRLFGFSNVQERTLFLSLTKVEGIGPKQALKVLSSISSQALCA
ALDTGDLCALQRIPGIGKKTAQRMLLALKGTLALTDAASCAQSQTDDRAA
HPSNLGCAPHAREIEDLVTALVQMGYDRKMAAEVIAQESAALCSVGRSLY
EEEATVLKRAILALSIAHPHAVAPAAE
>gid:10999  TP0588  conserved hypothetical protein
MSVWLFTGPEIGERDSAVQEVCARAQAQGTVDVHRLYAHETPVADLVDLL
RTRALFADAVCVVLYNAEVIKKCDEVHVLTEWIKDGGSRADVFLVLISDS
VSIHKRIEQNISPVHKRVFWELFENKKHAWVQRFFFQHEMRIEQEAIESL
LELVENNTRALKTVCTQLSLFFEKGRRITAHDISSLLVHTKEETSFTLFD
ALSKRDLEHSLMILNTLLCSKDVAPVQILAGLLTRSVALRIGTIYRRTKR
TLQR
>gid:11042  TP0626  exonuclease, putative
MKILHTADLHLGKTLHEVSLFASQKKMLGDLCTLLAQDNYAALIIAGDIY
DRCVPSAESVSLFSSFLQNIKRSMPRLPIYLIPGNHDSAQRLSFAQELLK
QQGVFIAQDPEESTRPHLLCHEGETVQLFLLPFLHAGAFSYLDEENTTCL
IHTQSELLQEASRRLQRAVSLDTPSILVAHLFTQKGISCESERPFVGNAV
YADPHWFDFFTYVALGHLHKCQKITERMYYSGSPLPYSFDEANTQKVALS
VEIHCNTKGFPIHVTPLPLEPLIPLRTIRDSFHALYTGDRYLLYQRDFLE
ITLTDPALVHNPIGLLKPRYPGLLSIKQENAFAFDIPPPYSSNEGIAPCT
HHSLRTHFDVFMHEVSPTPDDREKGALFQELFDEMQQEFSS
>gid:11043  TP0627  exonuclease (sbcC)
MKPMRLTLHNIGPFVGTHTVDFTALGPIFLVCGKTGSGKTTLFDAIAYAL
YGKPLGTRAEVIRSLRSHYAAPSEAAFATLEFSLGTKIYRVHRTLTCTLS
HRKTEQPEQLYLEQKKGHGWERIACAHKSETECVIHDLLKLNSKEFERVV
MLPQGECAQFLKANSKEKKETLMNLFPVDQYTALMERAKKKSLHAKAVLE
TLRSQLETLCAECMPDTYHERKQTLEAELQHARDALQQTRISHAYYTQKR
EALEAQLKKQQLCKELRARIETYRAQEPVHAETQKRIDRARKAAPLAAHI
KHVTQCEQDAQRIHAEIQEKMRSREQLLMKRAAHVAQQSSIEEQRRLLQT
LHSACIHIEDAHDVATSIRDISCQAHTLTQHIHTLAQQKTTLTQQEQSLC
KELDILQREAGTIDTRTSAFNDLQIQLAHAKKTQELSQRYAELCAAHATC
TAQCEKLEKIHAQKSAYSTRAREQLLQTKEQIHLQETRTHAVVLARLLEH
QEPCPVCGSCIHPNPARQDIDNLEPLTRRMQRIEQTYAQLETSEKDVYHI
LTSERERRASYSAQMQEIQHSFSILTSCDTRSSCDIPNVQKITVRVLDLT
EKLSRAKDMLACAQHALLRKKQPEQDLQDVRAHLQQCSQELAKKETALHA
LQETLTQQRVRIHALSIRLPKELLASNLLAPQKMQHEKESVAYWKEMLAH
CQTLMRELHTHIEEYDREFNEIENASSALGADIAAREDALNHVQKEYMHL
ARTVCCARTEAHFNNNEEVTAALMTDAELSHAAAEIQFFNELRAADTHLL
KTLEAEIGTEIPSDLDELNAQCHTLVKDEENFLSRIEILSATLHTLTHQY
LKYEECSKQLAQKTQESAKLITLSDELNGINQKKIQFDAWALISFLHEIT
AYANIRLQKMSEGRYHLRVADSHVNARGYQGLALLVADAYTGSVRPSATL
SGGETFMASISLALGLADSIQTRSGGIVLDSLFIDEGFGSLDEASLDKAI
GILDEIREGSRMIGIISHVHELRTRIPHKILIKKTNAGSHVMQGDAE
>gid:11050  TP0634  DNA ligase (lig)
MSTAQRRVQELEKLILHHQDRYYNAESDISDDAFDALWEELARLDPGNPL
LKAIGSDSQRDAVKKRHIVPMGSQHKAADEESFSAWAKKNALQAFLVQHK
LDGVSLELQYERGHFCCALTRGNGIVGDDVTANVRGMRGFVPTLTAEWGP
CGNLPFTGGVRGEVIMHKDIHRSHYPTHANCRNTVNGILKRKDGRGRTHL
HIVCYDAVPGTPGKPFTGSLPFADETEKLAWLARQGFVTVHSHRCANAQE
VVALRSEIMRTRELLPYSIDGLVVKSTDLDFQDAQLPRPKKQIAFKFSTQ
EAITTLRDVQWQTSGVTYTPIGITDPVRLAGTTVKRANLCNPNMLTKLCL
KIGSHVLISKRGEIIPKIEALVSTPAHAQEIHIPTQCTSCNTVLENSGSR
LFCPNVNCPLLSHHRITRWIECLEIKHVGTELIQRLFEEKKVRRIPDLYT
LTCEDLIEIEHVGNATAKKILEAIHHKKEIALQTFIAGFGIEGIGETMGE
KLICAGFDTLEKVLHATTETLESIYQFGTELAKSVVTGIARVKDDMCELL
DRGFVRILAKQQAESPLRGKSFCFSGSLRNGDRATIHRIRALGGVVRTSV
TRDLSYLIFESLSQPYRTAQKLKKEQGVALEIISEDEFCRLLDQASASCT
HTGETVHPLQGKSFYFSGASRSMNHKHAQEKVRALGGDVASSVTAQLDYL
VFYSQSTRYRTACALGIQIISEETLHKLIATAQSPLHTDAHVHAPLHGMS
FCFSGDLDGMTRAQAIALVQRLGGTVKTAVSTQLTYLVSNDPHGQSRKCQ
NAVRCGVRIISEHVFLALCTPGT
>gid:11051  TP0636  conserved hypothetical protein
MCVASRSWYAQALVLSLSAFGEGHKSVTLFVRLQDEAFILRAALFGGAQS
KLRGLVIPYTTGRVWVYSNPRTSMHKIVDFSVTHSRVALRDSIVRVWCAA
ICVDIIEASKGTISWTLVTAFLDGISLSSDGACKHALLRFLWRVLIGEGV
APNITSCSRCATQYAVSVSGVSRVAYLTQGESFVCAACAAPAEHRFELNA
EAWHFLNTVKECTPRHARALVLSQESYCELKQLLFCLITKMSGKKLKTLE
HAHAVL
>gid:11061  TP0643  DNA polymerase III, subunit epsilon (dnaQ)
MIYDWVFAVHEHVAFTAFDTETTGLKAEEDRIIEIGAVTFDRKGIIARFS
TLIFPDRAIPPDVSKINHITDDMLVNKPRFCEIVSDFSRFIKGTVLVAHN
ANFDVEFLNAELSLCKKQPLSHKVVDTYAMAQAVFPGLGRHQYRLQNLAL
QFGLTVHAAHRAEDDARVCMELFTTMIAHHAKQNGHCVNHAQSPTIKKLI
QEIQASSTDCSQELF
>gid:11088  TP0669  DNA polymerase III, subunit alpha (dnaE)
MARMSFVHLHVHSNYSLLDGASSLQRLVRTAKSLGQEALALTDHGNMFGA
LHFQKVCSAEGIKAIIGCELYVAPESRFDRSEHTIGRRYYHLIVLAKNET
GYRNLMVLSSKAYIEGMYYKPRVDDELLAQHAEGLICLSSCLAGQLPYLL
LQGRKREAEEHARKYRALFGVDNYFIEVQDHGLDEEKKVAPLLIELACRL
GIPLVVTNDVHYAEQEDSVAQDILLCIGTKKNRSDPNRLKFKTDEFYLKS
SEKMAQLFPHYPEMVLNTVRIAQRCNVRIPQPGPLLPLYQIPHEFSSKEH
YIRHLVHRGLYDRYAVVSEEIKARADYELDVIVRMDFVGYFLIVWDFITW
AKEHDIPVGPGRGSGASSIVAYALKITDIDPLRYKLLFERFMNPERISMP
DFDIDFCFERRQEVIEYVRARYGNDNVGQIITFGTLKPKAAIRDVGRVLD
IPLSEVLMITKLMPDDPKLTFKKAYESEQLAQMKQEPRYAELFQIAEKLE
DTNRNTSLHAAGIVIGKTALTDYVPLYKDSKTGKISTQFGMDLIEDCGLV
KMDFLGLKTLTLIQRTQNLVRRKGGKYTTFSISDISDQDPTTFSMLAEGK
SAAVFQFESRGMQGILKRAKPSKMEDLIALNALYRPGPMAFIDQYIESKR
DPGKIKYPDPCLEDILSETYGVIVYQEQVMQVAQRIAGFSLGEADILRRA
MGKKKLAVMQEKKKEFAERAEKQGFDKKHAENIFEILIPFAGYGFNKSHA
TAYSVVAYQTAFLKANFPAEFMAANLSNEINSAEKLPLYMAEAEKMGLSI
QKPDVNASEPYFSVCEGCIVYGLLGIKGLGEQVAFDVFDERIRNGPYTSF
VEVLDRVPATSLNKKNAEIMIKAGCFDRFGVTRASLTAHLDDAMKYVARK
KAVTSSRQASLFDETDLGECSEYTFPVMEEWSQRERLRIEKELMGYYISG
HPLDEYRSVIGEKATLDLGHIENARSENKYLIVGVLNAIHPYTTKSGKNM
AFGSFEDLHGSVDIVVFPVLWEEHRAQFLPETIMGLVGTVDFSKETPAFL
VDSVIDLEQLRFAQVKTILAGSEHRRVSSGEKTPLQKRGVSQEVHIEVSS
HVRAHAQFKSLYEILSAHTGGSGEVFLHMHVDDRTYVVYVPSCKVSATEV
FAQQLKGNESFVQILKECVQ
>gid:11108  TP0687  DNA recombinase (recG)
MLIGEIKEPVSVLKGTGKVVLAQLERLNISTIGDILSYWPRLWEDRTQEQ
MFSQWTLAHRLQVRVSVTAHCWFGFGKSKTLKLVVQDGQGCVAELLCFRR
NFLHFMFPVGSEAVVYGSFYEKDGLLESSSFDIEKIDCIEKKILPVYPLT
KGLKQMKLRMLICAAMDQWIGTVDSELPKPILEKYHLLTKRDVLLSMHTP
RTLDDVAKGKHSLIFEEFFSLQMTIGMRSLQKRGRLPLTQGESDQQSAIP
SVVSELSLLQKKLHRCLPFELTVDQKRVITEITQDLEREEPMARLIQGDV
GSGKTLVAFFSCLKIIEQGGQVALLAPTELLARQHADTAARLLAPIGIRL
AFLTGNVKSEGRAYLLEALVAGEINLVVGTHALFSKSVRYHDLRLVIIDE
QHRFGVLQRSALIQKGREGNPQGKTPHIIMMSATPIPRTLALSVFGDLDI
SIIKSMPGGRKPVITYIARKTKAEKVYEFVGNEIEKGRQAYFIYPRIHDI
GLTDLKSVQCMYMYLKNYFARYAVAMIHSKMTEEEQQRIMKYFSEGTVHI
LVATSVVEVGVDVPNANCIVIEHAERFGLSALHQLRGRVGRGDVQSYCFL
MHGDEMTECAKRRLKIMGSTADGFVIAEEDLKLRGPGDVGDTKNFEQSGY
SGFRVADPVRDYPILQVAREAAFELLRKEKGSSEAR
>gid:11113  TP0692  recA protein (recA)
MSKALKGDVPVSSSFEEKMKALEAARLQIEKQFGQGSLMKLGKDDAVQGV
EVIPTGNILLDEALGIGGYPRGRIIEIFGPESSGKTTLALHAVAEAQKRG
GIAAFIDAEHALDPQYAKDLGVSVGDLWISQPDTGEQALEIAESLVRSGA
VDIIVVDSVAALTPQAEIQGDMGDAHVGLIARLMSQALRKLTSIINKSKC
TLIFINQLRMKIGIMFGNPETTTGGIALKFYSSVRIEVRKVETLSRGDEE
AWGNKVRIRIVKNKMAPPFRKVETEILFGKGFSAFSCLLDAAVKQEIIEK
KGAWYAYREEKIGQGRDNAVGFLQQNMDITLEIERAVRTKLFPKQAFISS
FQEHRPALSLEASPEESDAKTLRRXASRGAGASSSRVQEGSAANDHFQDE
STTAKLL
>gid:11127  TP0704  single-stranded-DNA-specific exonuclease (recJ)
MKRWRAKALDEGRVRELTARYSCSALEAAILVRRKVVDADALLFHFERDL
RYLPGPFRFHAMSAAVDRLRLAHERKEKVLIFGDRDADGISATTLLFEAL
CAFGLTVCWRVPVADEPYGLSCNAVDEHAAAGGTLIVTVDCGISNRAEIA
YARHRGIDVLVIDHHAAPETLPDAIIINAKVPGAGYPHEFLSGCATAWKV
VTALRFSTSGWYQRPVVLLHVRPVTGAYTIEAVKMCNMEVVDRLSETVVP
RMLLPSHTRLGAFLEGQEVFVWDEQVVRTQLAKVFGGEFPWRFTDVRPRM
AAFFPQCERASLLRMKDFSRIGRARSKPMEEIESFINLFITFVQKDTQLY
RGAADELQLVAISTLSDLMVLAGENRIMVRYGLQAMNEAPRVGLRELFAI
QRLMGKKLGTVEVGWSIVPLINATGRLGCPHRAVELFLMREASQRALQAR
KMVQLNEQRKKLGRSARALVEPLARASLETYSNRLAVVCSDKIHRGVTGI
LANCLSEALRVPCVIICIMADGHAVGSLRSARGYHLFSLLDPLADLFSDY
GGHAFAAGFSIPSERIPQLLHRMELYAATIEFADESAQECGEFDAELDAT
QMTRGLLTLVDRFEPYGEGNPPLCFLAKRLKIFSASLFGRTERVHVKLTL
DAQVHKWPAIYWGAGEKLAQEFAVGDVVDAVFQVTRNTFQGTCTPQLVIQ
DLWRSE
>gid:11133  TP0710  conserved hypothetical protein
MNTRFDQIRRDMQKRYEEDSKRVCVSACAKTLDKALEAAAVQLGIPKYRV
EYEVLERGAGSFFSFRQKKWKIRAYESSSLEFAAGNVSAPHDSHRDVSSS
PNTGHDGAAFVLCKKEGVFLKITAPLGKGRKVSLASVQEKFRARGLALPP
ADTLKVLIKNATNSYVHVSSFERIPAHDAMLSVEIRENDMKAFVTATPPG
RNGADICADTILSFLRSNRVVYGIDMERVNSFQDCPVYHEPYLVARGTPP
KDGENARISYHFETDRTRVHLQELKTGKINFKELNLIHNVVKGQPLAQKL
PAQRGTPGKTVTGTYLPAQSGKDVSIPLGRNTALARDGLTVIAETDGQAL
LSRRGINVEPIYVVEGNVSVKTGNIMFLGTVLVHGNVEDNYEIKASGNIE
VRGTVGKALLDAEGDILVGQGIVGKEEGCVRAGKSLWAKFIQNCASVEAG
DLVIVSDGIMNSHVIANRKIICRGRRADIIGSNVAAAEAVYARNLGSQSG
GNDTQISVGFDPHRVRRLSMLQEELHAHERKLSDLSLNLQSLENLKRARK
ELPPDKEALETSLHEEKISLEQLVQQSRAELEEIQASLDASPIEGKISAS
GQVYSGVKVTIRDVSEEVRADSTAISFYLRNGLIRYGQYTGEQDEDYKRA
PSGYAY
>gid:11154  TP0731  conserved hypothetical protein
MPCNTQNLYQPGQKECTPMDEGRETVQPAHRAKEEKKQDAHLAWEVRKRH
EACRLRVFHVQELESVSPRKTVRRFVTLTAPEWVIVVPHVMERAQRFFVM
VRQWRCGSQTVCTEFPGGVIDAGEHPEAAARRELFEETGRRASSLAHLGT
IHPNPAVLENRVHIFSAECTPEVREPQLDTDEFLERCVLPVHDVYERMGR
APFDHALMAQPSFFFCGRIRFPPCNSVRYVACSASI
>gid:11193  TP0770  ATP-dependent RNA helicase
MQGAWLGAHRERAPRALERYGVQRSLCVFVSTRKFHFLLHFPSMDVSFEE
LGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAA
FGLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVY
GGVSIAEQLRNLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADE
MLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIASTFMGSYEVVEE
VTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFCQTKADADT
VAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGID
IEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYL
SKHCNGELKASTVPLVEHILTQKEGRIFSSLKTHLCQLLSEGVHGTFTRF
AQRLLQEDLKARVAEALGTSADVPQEPNVSLVAALLQIHYGTALDPRQYR
DIKTITPETARARPHDAEKAYVRIEYGKKSYLTRKRVVQFICALVKIPGH
LVDRVDITERCAFARIPRRAAEEAVRLSKKRKDLPRVSFVGHASRLRNTA
TPAEKSTYPRRLPSGEGLREQISRRTSSSKKASGKPEDSLPPPQEHRLD
>gid:11200  TP0775  endonuclease III (nth)
MRLLDSKGVHAVFEQLHAANPQPQGELHWRNTFTLLVAVLLSAQATDKSV
NKATAALFDVADTPQAMLALGEERLCSYIRTINLYPTKARRIIALSAELI
ERFAAQVPCDAHALESLPGVGHKTANVVLNMGFGIPTIAVDTHILRTAPR
IGLSSGRTPRAVERDLLVVTPREFRMHAHHWILLHGRYTCTARRPRCTEC
CLRDLCCKNNI
>gid:11235  TP0810  DNA adenine methyltransferase (dam)
MSRSDTARPFVKWAGGKRALAPTLFAHMPQTFGSYFEPFVGGGALFWHLC
ACTRVRLHDIYLSDINWPLLCAYAAVRDRVEELIVRVGQHIACHTPTYYR
LARRKFAVCEHPLEVAALFLYLNRSCYNGLYRVNKAGQFNVPLGRAAPAS
PFLNTTAPTPRSTQPAAQVGHLAIRIDEENLRSCARALANTTLNCQHFSC
IQPARGDFVYLDPPYLGTFSAYDKTGFDRAAHESLAAFCMHLDARGVLFM
LSNSDCPEVRAWYRPFRVQQLNAPRCIARSAHARGKRCEVLITNYPCADT
ATP
>gid:11321  TP0898  ATP-dependent nuclease, subunit A, putative
MTDFLFSFFQSLNAEQRRAVFSSHNAVVTAGAGSGKTKVISARYIHLVVE
RAIPVERIVVLTFTRKAAMEMARRIYEDLRLCVQSASAQPEPGHEAYLLR
AREALARFGEARIMTLDAFSHEIARVGARFFGIAPDFSLSEEENRALAHE
CAEDFFLEHREHPVVLHFLQQEHAEDCVRELFFIPLQDHGILTHPCDFRA
GLAHQIATARGLLKTVLCDIHAALHAIRHHMQEADAQNALIARCVALFAA
QDTAFSYTPAAEADAIADAFLARGYEEYAAKPDEFSVSDPDEGARRAAHD
CLRYCAAVKTLFCLKGNLGGRAGAAQAIKAQVKQLRLQLVPQMERLHAFF
AQVPFLVALSSLLELLQARFIRQKRERNCLSHADVAHLAVQVLRQYPEIR
VSYKRGIDAFMIDEFQDNNALQKELLFFLAEHEARTAHFLPPAHALCAHK
LFFVGDEKQSIYAFRGADVRVFRSLAGVLTPQVSGASQQELPLSAAAELQ
PTLQTLRINYRTEAALLERLNILFSHILRGPSESAENGYEVGFQYMQPAR
CTAGIEPQFRVIGVDRHRFSRPEHEAQHSAARPTPQAGRTGASEDSEDSL
SAQETEAWALARAIRAMVDGGTLVRHKGEAPRACTWADVVILLRSADKQA
RYERALRLWGIPYTSLQTRGMFCDAPLSDLLAPLRLVLEPADRHVYAQVL
RGPFVRVDDDTLSLLLLPPAPPDAPFSYIPAELSAPAARCVRAGADFFAR
VQQQVRRLATNTELLTYLWYTEAYGTLLAQDPLARPYHVIYDYAFELARR
ADRQGKGIGEFLDFVDACLSAQERVEELELPCTDRACGAVQIMSVHKSKG
LEFPIVCVPDAGSSGPRVMARVGAVHSPYGYIPRFLPHPEGVHPIFVQEQ
DTRARAYRAELRRVLYVAFTRAECHVIVSGVLPISDGHPAPAVSRSLADI
CSLLPSGDGSEPPSSLSFFSELLPALMHAAPLPPHPSPSVVPAPVSFDEC
LPLARPQAYQRALTGSARQSVPQASAPRDWYAAVPVRAPHYYPRLVQPVT
SLVSPAPGQNSASASPSPLTPQSPRGVEFGTHVHELLAQVFQSPAPTVAL
HSVQRVDSPAARLVACFLHSPLGCRACAAPAHQRFAEFSFLTRAPGNTKP
PHGAEYQAGTIDLLFLSNGVWHLVDYKTDYEEHPARYLPQLQHYARAVQD
LFSDHPVTAFLYYLRTGHEFSLEALESHFLKKNAVPDSE
>gid:11322  TP0899  T. pallidum predicted coding region TP0899
MGVARGLSARIRHMVEFVLQFDAQRLDGWRVVRTEKAFEFTDTQCFYTGL
VDRISCSPDARSLAVLDYKTGALPALSDYTDCEKKGRLSDFQIPMYVYLL
EQAGYTVTHAFFLDVRKRDFKVIVSNGRVDMGAKRGVDTVQFQAVMQRFE
QSVAVFSKAVRQECFAKAPYVTWLECASCRFAPVCRTSYVVRGAS
>gid:11336  TP0913  conserved hypothetical protein
MPKHNKLLGAFGEAYAARWLATRGYIIITRNWRRATGEIDIIAQQDDTIV
FVEVKTLRCTSYADLAIIVGKRKQKRICETAKHFLASAREYNHMCARFDV
IVLRSDPFRRQDVDIVHLPHAFEDLV
>gid:11405  TP0979  conserved hypothetical protein
MQIFDTHAHIGLIHPDPVERLRVVQEARRASVTRIMSICNSLHDFAAVYE
TLQFSPSVYHAVGVSPSEVMAPGKDWIDTIQKSLQLPQVVALGETGLDYC
KKYGDKRSQIGLFITQLDIASKAKKPVIIHNRGAGQDILDILSERIPDQG
GVFHCYSEDAEYARMALDLPVYFSFAGNLTYRNARNLHETVLALPLDRIL
VESESPFMSPATYRNKRNRPAHTVETVEFMAELLDMDMLELADQLWKNSC
ACFHLPE
>gid:11421  TP0994  conserved hypothetical protein
MEVGTRAGDYQERKALLLQACAGRSLPSCLHFSVGVRPAPEPIAHPETAL
SLLRSDVRALCAEQAPYRALGECGLDRHWNGPQVACKARKGSGVRGTPDL
DAEEYLFKAQLSIAKAQNLPLIIHSRDAFEPTLRCLDSVGWRKGVMHCFS
YGVVEAHAFLERGLYISCAGTLTYAKTTSELLARDALIRSIPLDRLLLET
DTPYLAPVPHRGTHNRPEYVRHTYALVANILGISEKALAQHVFANCCALF
EAQEPTEACSQAHAPTRYT
>gid:11432  TP1004  recombination protein (recR)
MIPAIEEVVEHLSRLPGIGVKLATRLAYHLLKRDPAEAQVLARGIACLHE
RVYRCVCCGAFCEGRTCALCTDASRDRGIICVVERAQDVEMMAGVGEYRG
LFHVLGGVIAPLEGVGPDQLRIAALLKRLQESSVREVILALNPTVEGDTT
ALYVQKILANFPVIVTRLASGIPVGGDLEYIDRTTLAHSLRGRRPLDCSE
A
>gid:11433  TP1005  DNA polymerase III, subunits gamma and tau (dnaH)
MAYQVTATRYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCG
KTSCARILAKALNCVQREASEPCGECPSCREIATGTNLNVIEIDGASHTG
VGDVRQIKEEILFPPHGTRYKVFIIDEVHMLSNSAFNALLKTIEEPPPYV
VFIFATTEVHRIPATVKSRCQQFHFRLVDTQTLVCALAQAAQQMQIAVED
GVLSWIARESAGSMRDAYTLFDQTVVSCAGPVTLENIQKKLGLMTDDSLA
ALFSHCCRKDARAALELVDALVSSGVSVEQCVIDCVRYARALLLFTQGIT
NESLVGIAANQVPEYVRTTWNASQIERALGLLLQLFRDIRFSVDPRYELE
LAISRLAWLSEYVSIQEVRVALDSVQQILDTHAVPGVCSASVGSDDGETG
VVSPHGIRPPMSTSVCTVRALQDALVEKLRASHQMLATALGSSYSWREED
TSVCMCVRTHYERSVISQHASLLKEYASELLGREVCVRVLLDSVPSSKVA
PSHLPQSPAPSALFTTSLLISGQECDRVSGDLPAQVKLLCDCVQGHVVRV
YEGTARCVPGEGKIAGAVRTPY
>gid:11434  TP1006  DNA gyrase, subunit B (gyrB)
MGIEYSASSITVLEGLEAVRKRPGMYIGSTGPNGLHHLVYEVVDNCIDEA
MAGYCDRITVVLEQGNVVRVEDNGRGIPVDVHPHEGVSALEVVLTKLHAG
GKFDKKSYKVSGGLHGVGVSVVNALSLWVEVTVYRDGAEYYQKFNVGMPL
APVEKRGVSEKRGTIIRWQADPSIFKETVAYDFDVLLTRLRELAFLNSTV
VIQLRDERLATAKQVEFAFEGGIRHFVSYLNRGKSVVPERPLYIEGSKSD
VLVEVALQYHDGYTENVQSFVNDINTREGGTHLEGFKSALTRVANDFLKK
SPKLAKKIEREEKLVGEDVRAGLTVVLSVKIPEPQFEGQTKTKLGNSEVR
GIVDSLVGERLTLYFEQNPGVLTKILEKSIAEAQARLAARRAKEAARRKS
GMDSFGLPGKLADCSLKDPAKCEVYIVEGDSAGGSAKKGRDSKTQAILPL
WGKMLNVEKTRLDKVLHNEKLQPIIATLGTGVGKDFDLTRIRYHKVIIMA
DADVDGSHIRTLLLTFFFRYLPQIIEAGYVYLAMPPLYRIAWSKKELYVY
SDTERDEALESIGKKSGVAVQRYKGLGEMDGTQLWETTMNPVRRKMMQVV
LSDAVEADRVFSTLMGEDVEPRRKFIEENAIYARLDV
>gid:11456  TP1028  DNA helicase II (uvrD)
MESYLSALNEAQRQAVCHYGSPLLILAGAGSGKTRVITTKIAHLIRSRQV
RPEQILAVTFTNKAAREMRTRACALESAAQGATICTFHALGVWILRRYAV
RLGLNPHFSIYDDHDVRALLPKILPHCDHSRAGMLARGISQAKDYGLDCA
SFESVHARVSAPACAARAVLGDRQFAHAYACYHRRMREMGTVDFGDLIML
PVQLLREHQDVAEQLHARWQVVMVDEYQDSNVAQFHFLQVLTGAHTYLCV
VGDDDQSIYRFRGAEVKNILTFPEFFQNTQIIRLEYNYRSTDAILRVADS
VVKKNQDRLGKALIAQRTGGTKPRLFLLNNQDEEAALCVHLIQEARARGI
PYADWAILYRVNAQSLSFEQCFLRNRIPYRIVGTLKFYSRAEVKDVLAFL
QLIVNGSDELALRRVLNKPPRGIGEKTQDALFVCAQQAAITDFTTLQSTH
LTALGTRARQKVSSFLSLLRALRARMPQAPAAGEEARTSAPPEEPVEERT
HDAEGLARFVSVVMEHTGLEEWYRQKDEEEGTQCAVNVQELMNAASLYAC
SHEGLVSFLEHIQLDQNMADEGGAADAVHLITIHNTKGLEFRRVILTGLE
NGVFPRDDEADIQEERRLMYVACTRAMDSLYLTACAYRRMWGRHTAMKPS
RFLTELDSALLEITDPRHFA
>gid:11457  TP1029  T. pallidum predicted coding region TP1029
MSKISSKISSVDQEKFQAFLQQILRNVKTQEDPRVLDAYRRLFRKSVPFS
MRSYVAAHLAHTHCRAGATAGSTRRTGAREGIRTGSAHAPSCASAPASAA
RARDFERKARDYPALCPGDTTSIFISIGKNRHIYPRDIIALLMQRADVAR
EHIGTIRILDHYSFIQVLSGEAEAVIARLNGLFYRGRTLTVSHSRRADEH
PAPSTEPHAAAVAPEPDFMAEPIPALEE