Gene list
Applied filters:
COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome
Number of genes found: 235
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View as list | ||||
# Escherichia coli K12, K-12 >b1459 orf, hypothetical protein MSFRQKKEDKSAEGVSIRYYISSKDMDAKEFAHAIRAHWLIEHSLHWVLD VKMNEDASRIRRGNAA >b1936 orf, hypothetical protein MVVTTSDVVMCQMRRSDVQGGYRVYGSWMAENVQDQVSILNQKLSEFAPS MPHAVRSDVINNRLQNLHLHAHHFLIRRHQLITHLNPHLHRN >b0298 transposase insE for insertion sequence IS3 MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLY NWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKR LK >b1458 orf, hypothetical protein MSIQSLLDYISVTPDIRQQGKVKHKLSAILFLTVCAVIAGADEWQEIEDF GHERLEWLKKYGDFDNGIPVDDTIARVVSNIDSLAFEKMFIEWMQECHEI TDGEIIAIDGKTIRGSFDKGKRKGAIHMVSAFSNENGVVLGQVKTEAKSN EITAIPELLNLLYLKKNLITIDAMGCQKDIASKIKDKKADYLLAVKGNQG KLHHAFEEKFPVNVFSNYKGDSFSTQEISHGRKETRLHIVSNVTPELL >b2299 putative regulator MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVVHDGMGK ILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPF AEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARC DEFTPDSLKALALWMKRNAKNEAVETETAE >b0540 transposase insE for insertion sequence IS3 MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLY NWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKR LK >b1027 transposase insE for insertion sequence IS3 MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLY NWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKR LK >b0373 transposase insE for insertion sequence IS3 MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLY NWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKR LK >b2088 transposase insE for insertion sequence IS3 MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLY NWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKR LK >b3023 orf, hypothetical protein MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKETGLSPVN QSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYA VARHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQR LETDVYVPLA >b4285 putative transposase MPFYFRKECPLNSGYLRKNRPEKPDGRRAVLRSQVLELHGISHGSAGARS IATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYL ERQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPD SRLTMKALEMAWETRGKPVGVMFQAIKAVIIRAGSSGSYCGDTGSGRV >b1578 orf, hypothetical protein MPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDG FEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERR FGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIA ESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPRE YLRQRACNGLSDNRCLEI >b0257 putative transposase MATLCHVFGVHRSSYKYWKNRPEKPDGRRAVLRSQVLELHGISHGSAGAR SIATMATQRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNH LERQFAVTEPNQVWCGDVTYSVPGVQGGHGCLNEPRVCLEY >b2213 ada, O6-methylguanine-DNA methyltransferase; transcription activator/repressor MKKATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRARHALRE NVSFYANASEALAAGFRPCKRCQPEKANAQQHRLDKITHACRLLEQETPV TLEALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESV TTSILNAGFPDSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCELGR CLVAESERGICAILLGDDDATLISELQQMFPAADNAPADLMFQQHVREVI ASLNQRDTPLTLPLDIRGTAFQQQVWQALRTIPCGETVSYQQLANAIGKP KAVRAVASACAANKLAIIIPCHRVVRGDGTLSGYRWGVSRKAQLLRREAE NEER >b2068 alkA, 3-methyl-adenine DNA glycosylase II, inducible MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEYRGVVTA IPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGA ARPGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFP EYICFPTPQRLAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPG DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFLPDDYLIKQRFPGMTP AQIRRYAERWKPWRSYALLHIWYTEGWQPDEA >b2212 alkB, DNA repair system specific for alkylated DNA MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQSPFRQMV TPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLC QRAATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGL PAIFQFGGLKRNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLT IDCRYNLTFRQAGKKE >b3387 dam, DNA adenine methylase MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRY ILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNK SQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYH FAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNS FTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRS ISSNGGTRKKVDELLALYKPGVVSPAKK >b1343 dbpA, ATP-dependent RNA helicase MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTG SGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPN TKILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTL VMDEADRMLDMGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQR DPLAIEIDSTDALPPIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNT KKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDV AARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEA QRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKKAKMRPGDV LGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT CRVRLLK >b1961 dcm, DNA cytosine methylase MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENHWSAAIL KRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIR RGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKE GVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACD TQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDQGKTFRIIMQTLDELGY DVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADFTLRDIS ECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYRYAKKHQARGNGFGYGM VYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPR RLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL EPKIKQAVALRQQEAQHGRRSR >b3162 deaD, inducible ATP-independent RNA helicase MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQ AECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPT RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTP GRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKN EALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQAL REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRI GRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRR LEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQ GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDV GDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL PKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERR EGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA >b0231 dinB, DNA polymerase IV MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARK FGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPL SLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAK IASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTC GDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMA EDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQ EHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLG L >b0799 dinG, probably ATP-dependent helicase MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHL AIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLL KKIIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQ EEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCY YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPDPKNLLLVLDEG HHLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAI PERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQ RLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQS KLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKI VIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF LDYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDL KGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL IQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFPIEQPEVPEG IVKKKEKTKSPRRRRR >b0226 dinJ, damage-inducible protein J MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFD LREPNQLTIQSIKNSEAGIDVHKAKDADDLFDKLGI >b3702 dnaA, DNA biosynthesis; initiation of chromosome replication; can be transcription regulator MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPNRFVLDW VRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQ VAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLA RAAARQVADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVY MHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEF FHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE TRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT GRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVADLLSKRRS RSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE SHDIKEDFSNLIRTLSS >b4052 dnaB, replicative DNA helicase; part of primosome MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDD VAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSV GGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQ GRTSEDLLDLAESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQP HDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAM LQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGT MGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRV PALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNS DLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR LTFNGQWSRFDNYAGPQYDDE >b4361 dnaC, chromosome replication; initiation and chain elongation MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRA MKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIA SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSG TSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGM LTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY >b0184 dnaE, DNA polymerase III, alpha subunit MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGL VKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLL ISKAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSAL VDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATN DVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCELF ADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGL EERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQW SKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMP DFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARK LEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAG LVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDML QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDN FIDRKHGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGY TLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEK FAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVVGL VDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAII EARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVL DGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLV VAARVMVTKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIV SGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNR LRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDLRGLI GSEQVELEFD >b3066 dnaG, DNA biosynthesis; DNA primase MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSF TVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFE AGSGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSH EVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRF RERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYE AQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRA TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLV RKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLIS QVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTT GQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELR QEELIARERTHGLSNEERLELWTLNQELAKK >b3701 dnaN, DNA polymerase III, beta-subunit MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLE MEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVR SGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQD VRYYLNGMLFETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGV IELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPK NPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQE EAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSVSSVQIE DAASQSAAYVVMPMRL >b0215 dnaQ, DNA polymerase III, epsilon subunit MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHV YLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNA AFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCA RYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEA TIQRIVRQASKLRVVFATDEEIAAHEARLDLVQKKGGSCLWRA >b0470 dnaX, DNA polymerase III, tau and gamma subunits; DNA elongation factor III MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVG KTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHV KFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEP RALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQAL SLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPA ALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVE MTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQPQSAPQQA PTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKA LEHEKTPELAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDN AVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPL EWRQAIYEEKLAQARESIIADNNIQTLRRFFDAELDEESIRPI >b2945 endA, DNA-specific endonuclease I MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPGTFYCGC KINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQD GGRKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQ CAMKVDFKEKAAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNK MYPVTDWECERDERIAKVQGNHNPYVQRACQARKS >b2798 exo, 5'-3' exonuclease MRGLFPISHPAVACSGIECYPYRLIFKGVIVAVHLLIVDALNLIRRIHAV QGSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKAGR PPMPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQ ATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWG LAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKLET HKEMAFLCRDIARLQTDLHIDGNLQQLRLVR >b1844 exoX, exodeoxyribonuclease X MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAI HRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTM KLARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDI MNTSGWTAEQMADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFN NLDSMSPELRLTLKHYLENT >b4312 fimB, recombinase involved in phase variation; regulator for fimA MKNKADNKKRNFLTHSEIESLLKAANTGPHAARNYCLTLLCFIHGFRASE ICRLRISDIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYP HAESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRHSCGFA LANMGIDTRLIQDYLGHRNIRHTVWYTASNAGRFYGIWDRARGRQRHAVL >b4313 fimE, recombinase involved in phase variation; regulator for fimA MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISELLDLHY QDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTD AIFISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERG ADTRLIQDYLGHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV >b3261 fis, site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN >b2231 gyrA, DNA gyrase, subunit A, type II topoisomerase MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLY AMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRY MLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYD GTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDD EDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEV DAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDI IAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHA PTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLME VIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVK YQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVY SMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMAT ANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAE GKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQN GYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITD AGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDT IDGSAAEGDDEIAPEVDVDDEPEEE >b3699 gyrB, DNA gyrase subunit B, type II topoisomerase, ATPase activity MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDE ALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHA GGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVP QAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSG VSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGI GVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE GYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVE QQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMTRRKGALDL AGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDAD VDGSHIRTLLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDE AMDQYQISIALDGATLHTNASAPALAGEALEKLVSEYNATQKMINRMERR YPKAMLKELIYQPTLTEADLSDEQTVTRWVNALVSELNDKEQHGSQWKFD VHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFITGGEYRRICTLGEKLRGL LEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYKGLGEMNPEQL WETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALKAA NIDI >b2496 hda, putative DNA replication factor MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQ NVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWF VPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLIT GDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFEL PEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILKL >b0962 helD, DNA helicase IV MELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLLAIHCKR GLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIAS GVLRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFD NCREAWRKCQAWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPA QARAVVNGEHSLLVLAGAGSGKTSVLVARAGWLLARGEASPEQILLLAFG RKAAEEMDERIRERLHTEDITARTFHALALHIIQQGSKKVPIVSKLENDT AARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQWSVPEGNFWDDEKLQR RLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLMAPLLKAWK GALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDT TYRFNSRIGEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALL DKLSGYAKPEERILILARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQ QADYVIIVGLQEGSDGFPAAARESIMEEALLPPVEDFPDAEERRLMYVAL TRARHRVWALFNKENPSPFVEILKNLDVPVARKP >b0059 hepA, probable ATP-dependent RNA helicase MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPV TRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREV FLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQ RTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQ LVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYR PVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSAR QELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF AEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDL INYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQ ALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPD FPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSST ISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN NLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESL DQAGWRLDALRLIVVTHQ >b1712 himA, integration host factor (IHF), alpha subunit; site specific recombination MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQVKLSGFG NFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE >b0912 himD, integration host factor (IHF), beta subunit; site-specific recombination MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGS FSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG >b0640 holA, DNA polymerase III, delta subunit MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEH HTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTL TGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRW VAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLP RVEQAVNDAAHFTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTL QRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQ AVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHKPLADVFIDG >b1099 holB, DNA polymerase III, delta prime subunit MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC QQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKL NEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPER LLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGA ALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQAPARLHWLAT LLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQL MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL >b4259 holC, DNA polymerase III, chi subunit MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAY RLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSRRDILISLR TSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK >b4372 holD, DNA polymerase III, psi subunit MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALT DPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSHCNSWRLGTDEPLSLEG AQVASPALTDLRANPTARAALWQQICTYEHDFFPRND >b1413 hrpA, helicase, ATP-dependent MLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARP EITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGR GIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTM VKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPR RPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADD TERDQLQAIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTE ILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTA RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS RPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLL EELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAM IITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQ KALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEY REIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVM VAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMAT EKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFREN LKLRAEVEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKK VSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGA DADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFV PAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHL KITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHI WSFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNG LRRLLLLNIPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDK LIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQILTAVFNINKR LKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKR LEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIE ELRVSYFAQQLGTPYPISDKRILQAMEQISG >b0148 hrpB, helicase, ATP-dependent MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKST WLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMR AQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLA LALLLDVQQGLRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVER RYLPLPAHQRFDDAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASR IGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIR LVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLHL IAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVN LLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAAT AAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADS SLIAPLLAGAFADRIARRRGQDGRYQLANGMGAMLDANDALSRHEWLIAP LLLQGSASPDARILLALLVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAW RRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQLRL RLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLDIYQ ALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMF GEATNPTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKG RYPKHVWPDDPANTAPTRRTKKYS >b4000 hupA, DNA-binding protein HU-alpha (HU-2) MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTF KVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK >b0440 hupB, DNA-binding protein HU-beta, NS1 (HU-1) MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTF AVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN >b0022 insA_1, IS1 protein InsA MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR >b0265 insA_2, IS1 protein InsA MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR >b0275 insA_3, IS1 protein InsA MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR >b1894 insA_5, IS1 protein InsA MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR >b3444 insA_6, IS1 protein InsA MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFTYTASQP GTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR >b4294 insA_7, IS1 protein InsA MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSPCRKTWQLQFTYTASQP GKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR >b0021 insB_1, IS1 protein InsB MPGNSPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV ELHDKVIGHYLNIKHYQ >b0264 insB_2, IS1 protein InsB MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV EQHDKVIGHYLNIKHYQ >b0274 insB_3, IS1 protein InsB MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV EQHDKVIGHYLNIKHYQ >b0988 insB_4, IS1 protein InsB MPGNSPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERYNLNLRQHLARLGRKSLSFSKSV ELHDKVIGHYLNIKHYQ >b1893 insB_5, IS1 protein InsB MPGNSPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV ELHDKVIGHYLNIKHYQ >b3445 insB_6, IS1 protein InsB MPGNSPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMDEQWGYV GAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMT DGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSV ELHDKVIGHYLNIKHYQ >b2622 intA, prophage CP4-57 integrase MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQFRYYRP LTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQ EAKTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEI KAHTLVKAVQPVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIG KAFEKPQKKNMPSIRPDQLPQLMHTMRTASISMSTRCLFMWQLLTITRPA EAAEARWDEIDFNASEWKIPAARMKMNRDHTVPLSDGALAILEMMKPLSG GREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVLVSHGLRSIASTALNEE GFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADLVKAADSGS IVLTHLSKIRLVG >b4271 intB, prophage P4 integrase MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLL ANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLE DNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYA VQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLT RWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRG SKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVR AAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ >b0537 intD, prophage DLP12 integrase MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAELWRVEK LGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISE AKIYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHL AMIKAILRAAERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPE PLKSVVKFALATGLRKSNIINLEWQQIDMQRRVAWVNPEESKSNRAIGVA LNDTACKVLRDQIGKHHKWVFVHTKAAKRADGTSTPAVRKMRIDSKTSWL SACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVLQEMGGWESIEMVRRYA HLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKKA >b1140 intE, prophage e14 integrase MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTNEAEAIA IATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLK SGDIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPR MAQVVRSVLIDVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWK KIFDIADATHRYMGNAMLLALVTGQRLGDISRMKFSDIWDDHLHVIQEKT GSKIAIPLSLRLNAINWSLRDVVARCRDYAVSAYLVHFFRSTSQAERGAQ VKANTLTMNFSKARDLARIDWGEGSPATFHEQRSLSERLYKEQGLDTQKL LGHKTQQQTDRYHDDRGKGWSKVAL >b0281 intF, putative phage integrase MFIPSIYLHQQLHYCKTAILNWSRKMALSRQKFTFERLRRFTLPEGKKQT FLWDADVTTLACRATSGAKAFVFQSVYAGKTLRMTIGNINDWKIDDARAE ARRLQTLIDTGIDPRIAKAVKIAEAESLQAESRKTKVTFSVAWEDYLQEL RTGISAKTKRPYSTRYIADHINLSSRGGESKKRGQGPTSAGPLASLLNLP LSELTPDYIAAWLSTERQNRPTVTAHAYRLLRAFIKWSNYQKKYQGIIPG DLAQDYNVRKMVPVSASKADDCLQKEQLKSWFSAVRSLNNPIASAYLQVL LLTGARREEIASLRWSDVDFKWSSMRIKDKIEGERIIPLTPYVSELLNVL AQSPNSDVNKEGWVFRSNSKSGKIIEPRSAHNRALVLAELPHISLHGLRR SFGTLAEWVEVPTGIVAQIMGHKPSALAEKHYRRRPLDLLRKWHEKIETW ILNEAGITIKNNVDMR >b1579 intQ, putative lambdoid prophage Qin defective integrase MITDVWKYRGKSTGELRSSVCYAIKTGVFDYAKQFPSSRNLEKFGEARQD LTIKELAEKFLALKETEVAKTSLNTYRAVIKNILSIIGEKNLASSINKEK LLEVRKELLTGYQIPKSNYIVTQPGRSAVTVNNYMTNLNAVFQFGVDNGY LADNPFKGISPLKESRTIPDPLSREEFIRLIDACRNQQAKNLWCVSVYTG VRPGELCALGWEDIDLKNGTMMIRRNLAKDRFTVPKTQAGTNRVIHLIKP AIDALRSQMTLTRLSKEHIIDVHFREYGRTEKQKCTFVFQPEVSARVKNY GDHFTVDSIRQMWDAAIKRAGLRHRKSYQSRHTYACWSLTAGANPAFIAN QMGHADAQMVFQVYGKWMSENNNAQVALLNTQLSEFAPTMPHNEAMKN >b1345 intR, lambdoid prophage Rac integrase MSKLPTGVEIRGRYIRIWFMFRGKRCRETLKGWEITNSNIKKAGNLRALI VHEINSGEFEYLRRFPQSSTGAKMVTTRVIKTFGELCDIWTKIKETELTT NTMKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLHGETLYLDNPR SNKKGRTVRTVDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPD PLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGELAALAWEDVDLEKGIV NVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTGHHRKSEIT FYHREYGRTEKQKLHFVFMPRVCNGKQKPYYSVSSLGARWNAAVKRAGIR RRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMND EQIAMLNARLS >b2349 intS, putative prophage CPS-53 integrase MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKIL TVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEW YEHKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFED RGAMERANKARRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFL PADQIPAFNKALATFSGSIVSLIATKVLRYTALRTKELRSMLWKNVDFEN RIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAGRNDKK KPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAH ANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE >b2442 intZ, putative prophage integrase MPKHARYSSRRTRRIHDRGYPVVKSRYPVLSKTPLTAKAIDAAQPQDKPY KLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLITLKEARR RATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWS ESYAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKKERTAPEQARKL RRRIGEIFKFAVITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYK ALERAGSVQIQTAIRLLILTALRTAELRLCRWEWINLEDATITLPAEVMK ARRPHVVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPLSASAILKALE RIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVPKGIRGVYNQA AYLKQRRAMMQDYADAIDSILAGNGNPLEPE >b2411 ligA, DNA ligase MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHP ELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQD RLKNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVR TIRAIPLKLHGENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPR NAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLLQFKKWG LPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAG VLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTR EVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNAL EKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVP DVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAG KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLA KAQELGIEVIDEAEMLRLLGS >b4346 mcrB, component of McrBC 5-methylcytosine restriction system MRKAYLMESIQPWIEKFIKQAQQQRSQSTKDYPTSYRNLRVKLSFGYGNF TSIPWFAFLGEGQEASNGIYPVILYYKDFDELVLAYGISDTNEPHAQWQF SSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGIDYTRFASMLDNI INDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPETTIETILKRLTIK KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG YRPNGVGFRRKDGIFYNFCQQAKEQPEKKYIFIIDEINRANLSKVFGEVM MLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDY ALRRRFSFIDIEPGFDTPQFRNFLLNKKAEPSFVESLCQKMNELNQEISK EATILGKGFRIGHSYFCCGLEDGTSPDTQWLNEIVMTDIAPLLEEYFFDD PYKQQKWTNKLLGDS >b1114 mfd, transcription-repair coupling factor; mutation frequency decline MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQ NALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE LLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLL GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE AGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA >b2831 mutH, methyl-directed mismatch repair MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALVGLVTPENLKRDKGW IGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPL TGNSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWSPNEEE DRQLREDWEELMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGAR GERILTLPRGFYLKKNFTSALLARHFLIQ >b4170 mutL, enzyme in methyl-directed mismatch repair MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGG AKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALA SISSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDL FYNTPARRKFLRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYR AVPEGGQKERRLGAICGTAFLEQALAIEWQHGDLTLRGWVADPNHTTPAL AEIQYCYVNGRMMRDRLINHAIRQACEDKLGADQQPAFVLYLEIDPHQVD VNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQLETPLPLDDEPQPAPRS IPENRVAAGRNHFAEPAAREPVAPRYTPAPASGSRPAAPWPNAQPGYQKQ QGEVYRQLLQTPAPMQKLKAPEPQEPALAANSQSFGRVLTIVHSDCALLE RDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSAEEKSAL EKAQSALAELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQS VFEPGNIAQWIARNLMSEHAQWSMAQAITLLADVERLCPQLVKTPPGGLL QSVDLHPAIKALKDE >b3635 mutM, formamidopyrimidine DNA glycosylase MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRLSDQPVL SVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNG KVLRYTDPRRFGAWLWTKELEGHNVLTHLGPEPLSDDFNGEYLHQKCAKK KTAIKPWLMDNKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLAR VIKAVLLRSIEQGGTTLKDFLQSDGKPGYFAQELQVYGRKGEPCRVCGTP IVATKHAQRATFYCRQCQK >b2733 mutS, methyl-directed mismatch repair MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQL LDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPA TSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDI SSGRFRLSEPADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRP LWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYAKDTQRT TLPHIRSITMEREQDSIIMDAATRRNLEITQNLAGGAENTLASVLDCTVT PMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDFTAGLQPVLRQVGDLER ILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQALREKMGEF AELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAER YIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALA ELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANP LNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPI DRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTS TYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESIS PNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLK SLV >b0099 mutT, 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAV VRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQ PGEWMSLVGLNADDFPPANEPVIAKLKRL >b2961 mutY, adenine glycosylase; G.C--> T.A transversions MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIP YFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLH GGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYA VSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCS LCPLQNGCIAAANNSWALYPGKKPKQTLPERTGYFLLLQHEDEVLLAQRP PSGLWGGLYCFPQFADEESLRQWLAQRQIAADNLTQLTAFRHTFSHFHLD IVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLAAPVERLLQQLRTGAPV >b0714 nei, endonuclease VIII and DNA N-glycosylase with an AP lyase activity MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVET RGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKT ILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFR NRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAH ALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERCGSIIEKTTL SSRPFYWCPGCQH >b3998 nfi, endonuclease V (deoxyinosine 3'endoduclease) MIMDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEVTRAA MVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPD LVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSSEPGA LAPLMDKGEQLAWVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRL PEPTRWADAVASERPAFVRYTANQP >b2159 nfo, endonuclease IV MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTID EFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQ LGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQ GSNLGFKFEHLAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTF ADFARTVGFKYLRGMHLNDAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQD DRFDGIPLILETINPDIWAEEIAWLKAQQTEKAVA >b1548 nohA, DNA packaging protein NU1 homolog from lambdoid prophage Qin MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIRWY AERDAEIENEKLRREVEELRQASETDLQPGTIEYERHRLTRAQADAQELK NARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDF LKRDIIKAMNKAAALDELIPGLLSEYNRADRQYAGGSRS >b0560 nohB, bacteriophage DNA packaging protein MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSAAVIKWY AERDAEIENEKLRREVEELLQASETDLQPGTIEYERHRLTRAQADAQELK NARDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDF LKRDIIKAMNKAAALDELIPGLLSEYIEQSG >b1633 nth, endonuclease III; specific for apurinic and/or apyrimidinic sites MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKA TAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQH NGEVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQF APGKNVEQVEEKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIE DLCEYKEKVDI >b1865 ntpA, dATP pyrophosphohydrolase MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAP QAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTE SWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA >b3996 nudC, NADH pyrophosphatase MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRALQIGEWQ GEPVWLVQQQRRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGY CGHEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHR NGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSL MTAFMAEYDSGDIVIDPKELLEANWYRYDDLPLLPPPGTVARRLIEDTVA MCRAEYE >b1759 nudG, CTP pyrophosphohydrolase MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALV RELREELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQA LVWCSPEEALQYPLAPADIPLLEAFMALRAARPAD >b1335 ogt, O-6-alkylguanine-DNA/cysteine-proteinmethyltrans ferase MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDIHYRKEG YERISATNPGGLSDKLREYFAGNLSIIDTLPTATGGTPFQREVWKTLRTI PCGQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMT GYAGGVQRKEWLLRHEGYLLL >b3019 parC, DNA topoisomerase IV subunit A MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRRIVYAMS ELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLV DGQGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGT LQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPK TTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKEDG AVVISALPHQVSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIV PRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAVKNLLEILSEW LVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEPK PALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPV TIVLSQMGWVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTG RSYAIDPITLPSARGQGEPLTGKLTLPPGATVDHMLMESDDQKLLMASDA GYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAG RMLMFPVSDLPQLSKGKGNKIINIPSAEAARGEDGLAQLYVLPPQSTLTI HVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEIDSPRRASSGDS EE >b3030 parE, DNA topoisomerase IV subunit B MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAG HAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF SNKNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDL QVVGTCGKRNTGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEI TFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVD WALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYRNI LPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVV KDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLTSGPALPGK LADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIAT LLCALFVKHFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQ LKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTD AMMDMLLAKKRSEDRRNWLQEKGDMAEIEV >b0708 phrB, deoxyribodipyrimidine photolyase (photoreactivation) MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWATHNMSPR QAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHL FYNYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKV FTPFKNAWLKRLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAH FPVEEKAAIAQLRQFCQNGAGEYEQQRDFPAVEGTSRLSASLATGGLSPR QCLHRLLAEQPQALDGGAGSVWLNELIWREFYRHLITYHPSLCKHRPFIA WTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITAS FLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRIF NPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQP IVEHKEARVQTLAAYEAARKGK >b1158 pin, inversion of adjacent DNA; at locus of e14 element MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLR TLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPM GRFFFHVMGALAEMERELIVERTKAGLETARAQGRIGGRRPKLTPEQWAQ AGRLIAAGTPRQKVAIIYDVGVSTLYKRFPAGDK >b1545 pinQ, putative DNA-invertase from lambdoid prophage Qin MSQIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSER PGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLAL GGIDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPP VLNEEQKQAVFERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI >b1374 pinR, putative DNA-invertase from lambdoid prophage Rac MSRIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGSAATSER PGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLAL GGIDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPP VLNEEQKQVVFERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI >b3863 polA, DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLNMLRSLI MQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVK AMGLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNIT LINTMTNTILGPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKT AQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLA TIKTDVELELTCEQLEVQQPAAEELLGLFKKYEFKRWTADVEAGKWLQAK GAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAP VFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRER ALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILN SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAE DADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPK VLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLK KTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINP KTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPEDYV IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVT SEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLE YMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQG TAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQI HQLMENCTRLDVPLLVEVGSGENWDQAH >b0060 polB, DNA polymerase II MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQV PRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGG VTVYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPL KWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVAS RPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDN SELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMP FLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASP GGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS TEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFY GVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTF VWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCR FLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQ ELYLRIFRNEPYQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVP PHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYE HYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF >b3935 priA, primosomal protein N'(= factor Y)(putative helicase) MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIGIVVSVS DASELPLNELKAVVEVLDSEPVFTHSVWRLLLWAADYYHHPIGDVLFHAL PILLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKI WRDQVATLEFNDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLN TEQATAVGAIHSAADTFSAWLLAGVTGSGKTEVYLSVLENVLAQGKQALV MVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSAWLKAKNGEAAIV IGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWRYHARDLAVYRAHSEQI PIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVLDLKGQKVQ AGLAPALITRMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDH YYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAP LFPGVPISRIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPD VTLVALLDVDGALFSADFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHH PEHPLLQTLLYKGYDAFAEQALAERRMMQLPPWTSHVIVRAEDHNNQHAP LFLQQLRNLILSSPLADEKLWVLGPVPALAPKRGGRWRWQILLQHPSRVR LQHIINGTLALINTIPDSRKVKWVLDVDPIEG >b4201 priB, primosomal replication protein N MTNRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQM PVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELI DSGD >b0467 priC, primosomal replication protein N'' MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRATTLQACL DEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDS APPKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVE AYEARLARCRHALEKIENRLARLTR >b3638 radC, DNA repair protein MKVKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEM LENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREE SPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHRRLFSGTLNHV EVHPREIIREAIKINASALILAHNHPSGCAEPSKADKLITERIIKSCQFM DLRVLDHIVIGRGEYVSFAERGWI >b2699 recA, DNA strand exchange and renaturation, DNA-dependent ATPase, DNA-and ATP-dependent coprotease MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDI ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL DPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAAL TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKI GVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVGSETRVKVVKN KIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIG QGKANATAWLKDNPETAKEIEKKVRELLLSNPNSTPDFSVDDSEGVAETN EDF >b2820 recB, DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAF PRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERL LEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQ QLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRY LQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESS GIDRRKFNRSNQAKWIDKISAWAEEETNSYQLPESLEKFSQRFLEDRTKA GGETPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELG FDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRI WHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMK MWLMEGESCGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVR ASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLL QAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDVVVEEFDGYRQ IWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYP LVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLR LLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDA AGLRTCIEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDN WRVTSYSGLQQRGHGIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGAS PGTFLHSLFEDLDFTQPVDPNWVREKLELGGFESQWEPVLTEWITAVLQA PLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAGC PPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAA AMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGVDKEH PQQGIYTTRPNAGLIALMDEMFAGMTLEEA >b2822 recC, DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTL SQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLP QLLEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWE TGHLVEGLGEAQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESA TTCPPGLPSRVFICGISALPPVYLQALQALGKHIEIHLLFTNPCRYYWGD IKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQLFNSDGEQDVGNPLL ASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNLLHNIQSDILELENRAV AGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEED PTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNES GIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPY DESSGLIAELVGHLASLLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFL PDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDELAQRLDQERI SQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQE LIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ SYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQ MRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRR FRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGV QITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNGESRLFL RKDGEWRFPPLAAEQALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCY DAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLWRQLTPE TMEAIVEQSQRFLLPLFRFNQS >b2819 recD, DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSHDAGEGH VCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPM ILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLLGAQPGS QRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ LASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRD SLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRLLQS GEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGI ALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAA LILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL AALFSSRE >b3700 recF, ssDNA and dsDNA binding, ATP binding MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR AFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGT DGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTA WSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIA ADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHG PHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV EKGKITD >b3652 recG, DNA helicase, resolution of Holliday junctions, branch migration MKGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHL YPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFS AAMKNSLAAGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTP VYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRT LHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRFHAQP LSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGS GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGW LAGKQKGKARLAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE LPPGRTPVTTVAIPDTRRTDIIDRVHHACITEGRQAYWVCTLIEESELLE AQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVAT TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKT PLSKTAQIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVAD LLRDQAMIPEVQRLARHIHERYPQQAKALIERWMPETERYSNA >b2892 recJ, ssDNA exonuclease, 5'--> 3' specific MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERSVKGMLP WQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGC SNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHAR SLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQ GMSRIRAGKCRPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDM SVGVALLLCDNIGEARVLANELDALNQTRKEIEQGMQIEALTLCEKLERS RDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAGDGTLKGSG RSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFG ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREV QLAYKLDINEFRGNRSLQIIIDNIWPI >b2616 recN, protein used in recombination and DNA repair MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRA EADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSD GRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYA NETSLLQEMTARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEF NPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDANLQSQLYTAK QLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFE LEQRISKQISLARKHHVSPEALPQYYQSLLEEQQQLDDQADSQETLALAV TKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQFTIDVKFD EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARK METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGH QHYFVSKETDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKEL LAA >b2565 recO, protein interacts with RecR and possibly RecF proteins MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGAL QPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVL EYETRFSELFFDYLHCIQSLAGVTGTPEPALRRFELALLGHLGYGVNFTH CAGSGEPVDDTMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDAD TLRAAKRFTRMALKPYLGGKPLKSRELFRQFMPKRTVKTHYE >b3822 recQ, ATP-dependent DNA helicase MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTG GGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQT REQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC ISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLND PLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVE DTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRR CLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEGRQEPCGNC DICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDY GHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARP VLRGESSLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADES NVPPYVVFNDATLIEMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIR AHVDGDDEE >b0472 recR, recombination and repair MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRA MSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQ FSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEG EATANYIAELCAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIR F >b1349 recT, recombinase, DNA renaturation MTKQPPIAKADLQKTQGNRAPAAVKNSDVISFINQPSMKEQLAAALPRHM TAERMIRIATTEIRKVPALGNCDTMSFVSAIVQCSQLGLEPGSALGHAYL LPFGNKNEKSGKKNVQLIIGYRGMIDLARRSGQIASLSARVVREGDEFSF EFGLDEKLIHRPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIELVRSL SKAGNNGPWVTHWEEMAKKTAIRRLFKYLPVSIEIQRAVSMDEKEPLTID PADSSVLTGEYSVIDNSEE >b1564 relB, negative regulator of translation MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTL LSDEDAELVEIVKERLRNPKPVRVTLDEL >b3778 rep, rep helicase, a single-stranded DNA dependent ATPase MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHI AAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALG MKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPS QAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEV RKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSW RGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFEK RLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYR GNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDS AFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGY EALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEM RMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELD QVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGI TRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQDDLIWEQERKVVSAE ERMQKGQSHLANLKAMMAAKRGK >b3630 rfaP, lipopolysaccharide core biosynthesis; phosphorylation of core heptose; attaches phosphate-containing substrate to LPS co MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLK WHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEK GLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMV RKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRR WRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMAS VKAERIKERTQRKGL >b3624 rfaZ, lipopolysaccharide core biosynthesis MKNIRYIDKKDVENLIENKISDDVIIFLSGPTSQKTPLSVLRTKDIIAVN GSAQYLLSNNIVPFIYVLTDVRFLHQRRDDFYKFSQRSRYTIVNVDVYEH ASKEDKLYILQNCLVLRSFYRREKGGFIKKIKFNILRQIHKELLISVPLS KKGRLVGFCKDISLGYCSCHTIAFAAIQIAYSLKYARIICSGLDLTGSCS RFYDENKNPMPSELSRDLFKILPFFRFMHDNVKDINIYNLSDDTAISYDV IPFIKLQDISAEESKDMTRKKMQYRTSTDSYAN >b3780 rhlB, putative ATP-dependent RNA helicase MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVA GQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQI HADAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSAT LSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL IEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA GASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLT RPRTGNGPRRTGAPRNRRRSG >b0797 rhlE, putative ATP-dependent RNA helicase MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG KTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQV EILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEK LLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELLSHMIGKGNWQQVLV FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC VDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQQRGGGGRG QGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP AAAQ >b0214 rnhA, RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELM AAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKN VDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTG YQVEV >b0183 rnhB, RNAse HII, degrades RNA of DNA-RNA hybrids MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLNDSKKLS EKRRLALYEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHI APEYVLIDGNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAAL DIVFPQYGFAQHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS >b1652 rnt, RNase T, degrades tRNA MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQG WLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIF KVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFD TAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNR WKRLGGWPLSAAEEV >b0550 rus, endodeoxyribonuclease RUS (Holliday junction resolvase) MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIG LAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVV KMPVTKGGRLELTITEMGNE >b1861 ruvA, Holliday junction helicase subunit B; branch migration; repair MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTH FVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVN AVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTS PASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALR AAL >b1860 ruvB, Holliday junction helicase subunit A; branch migration; repair MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKL RGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAM LTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKI DLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFM GLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQA LDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDV LEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEMP >b1863 ruvC, Holliday junction nuclease; resolution of structures; repair MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYA GVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVF EYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITH CHVSQNAMQMSESRLNLARGRLR >b2011 sbcB, exonuclease I, 3'--> 5' specific; deoxyribophosphodiesterase MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFY CKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCIL GYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPE GINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTR QPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAI FAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQML VQQYADDKEKVALLKALWQYAEEIV >b0397 sbcC, ATP-dependent dsDNA exonuclease MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAI CLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNR ARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRS MLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTEL EKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLT RQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIA EHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNT WLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALA AITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQ NVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQL QAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLR GQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQP WLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTL TGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILET LPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKA QAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLV TQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIR QQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQ GLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRT LSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDA LDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK >b0398 sbcD, ATP-dependent dsDNA exonuclease MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVF DTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFL NTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQ QHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIY IGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECG KSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVS QEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLA SQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA >b2009 sbmC, SbmC protein MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVPKEWVAV YYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVAR VVGDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYV AVQPKHH >b0687 seqA, negative modulator of initiation of replication MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAPVTKEVR VASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYS LDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITN TNTGRKCSMIEHIMQSMQFPAELIEKVCGTI >b4473 smf, orf, hypothetical protein MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQ RFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEG ELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDG VAHKAALQVNGVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLD VPPLAYNFPRRNRIISGLSKGVLVVEAALRSGSLVTARCALEQGREVFAL PGPIGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYS PDQQDVALPFPELLANVGDEVTPVDVVAERAGQPVPEVVTQLLELELAGW IAAVPGGYVRLRRACHVRRTNVFV >b2576 srmB, ATP-dependent RNA helicase MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELA KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFA ERLLEDPVEVSANPSTRERKKIHQWYYRADDLEHKTALLVHLLKQPEATR SIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS LVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTGKPSKKVLA KRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE >b4059 ssb, ssDNA-binding protein MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMK EQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTT EVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSG GAQSRPQQSAPAAPSNEPPMDFDDDIPF >b3558 t150, IS150 putative transposase MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVKKRISEI YHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSY RGEVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNN EVISYSLSERPVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQN ILKEHGIKQSMSRKGNCLDNAVVECFFGTLKSECFYLDEFSNISELKDAV TEYIEYYNSRRISLKLKGLTPIEYRNQTYMPRV >b3549 tag, 3-methyl-adenine DNA glycosylase I, constitutive MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVL KKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNAR AYLQMEQNGEPFVDFVWSFVNHQPQVTQATTLSEIPTSTSASDALSKALK KRGFKFVGTTICYSFMQACGLVNDHVVGCCCYPGNKP >b4483 tatD, cytoplasmic Dnase MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLAR QYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNF STPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAV LHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLI ETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDA NVKTLFGIAF >b1274 topA, DNA topoisomerase type I, omega protein MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAAKKSADS TSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLA EKADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQA FNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVA VRLVVEREREIKAFVPEEFWEVDASTTTPSGEALALQVTHQNDKPFRPVN KEQTQAAVSLLEKARYSVLEREDKPTTSKPGAPFITSTLQQAASTRLGFG VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDNFGKKYLPE SPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQLIWRQFVA CQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL PAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASI ISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSL DQVANHEAEWKAVLDHFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGED AETNALRAKRRCPKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFR IKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTRKILRNGEVAP PKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVEEL YRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATG WSAFYVDGKWVEGKK >b1763 topB, DNA topoisomerase III MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGHLLEQAQ PDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVH AGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLR SNSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQT PVLGLVVRRDEEIENFVAKDFFEVKAHIVTPADERFTAIWQPSEACEPYQ DEEGRLLHRPLAEHVVNRISGQPAIVTSYNDKRESESAPLPFSLSALQIE AAKRFGLSAQNVLDICQKLYETHKLITYPRSDCRYLPEEHFAGRHAVMNA ISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSAINLTENEA KVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAM TGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHS TDAGKALFHSLPEMATRPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLY QLIDQAKRTPVRQFRGIVAPGSGGSADKKKAAPRKRSAKKSPPADEVGSG AIA >b0372 tra5_1, transposase insF for insertion sequence IS3 MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCD SVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASR KFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAV VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQY CSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISR EIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA >b0541 tra5_2, transposase insF for insertion sequence IS3 MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCD SVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASR KFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAV VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQY CSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISR EIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA >b1026 tra5_3, transposase insF for insertion sequence IS3 MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCD SVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASR KFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAV VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQY CSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISR EIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA >b2089 tra5_4, transposase insF for insertion sequence IS3 MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCD SVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASR KFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAV VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQY CSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISR EIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA >b0299 tra5_5, transposase insF for insertion sequence IS3 MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQFRQHCD SVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASR KFSPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAV VIDLWSRAVIGWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQY CSADYQAQLKRHNLRGSMSAKGCCYDNACVESFFHSLKVECIHGEHFISR EIMRATVFNYIECDYNRWRRHSWCGGLSPEQFENKNLA >b0256 tra8_1, IS30 transposase MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDTGGIKPH ERKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRG RRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISG WLRRTKPRQKTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRR HTRKGERGTINIVNGTPIHERSRNIDNRRSLGHWEGDLVSGTKNSHIATL VDRKSRYTIIVRLRGKDSVSVNQALTDKFLSLPSELRKSLTWDRGMELAR HLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQHE LDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD >b1404 tra8_2, IS30 transposase MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDTGGIKPH ERKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRG RRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISG WLRRTKPRQKTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRR HTRKGERGTINIVNGTPIHERSRNIDNRRSLGHWEGDLVSGTKNSHIATL VDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKSLTWDRGMELAR HLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQHE LDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD >b4284 tra8_3, IS30 transposase MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDTGGIKPH ERKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRG RRYYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISG WLRRTKPRQKTLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRR HTRKGERGTINIVNGTPIHERSRNIDNRRSLGHWEGDLVSGTKNSHIATL VDRKSRYTIILRLRGKDSVSVNQALTDKFLSLPSELRKSLTWDRGMELAR HLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIRQYFPKKTCLAQYTQHE LDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD >b0259 trs5_1, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b3218 trs5_10, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b3505 trs5_11, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b0552 trs5_2, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b0656 trs5_3, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b1331 trs5_4, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b1370 trs5_5, IS5Y transposase MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPFYPKAGN GRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALP DRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAP SSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANE HDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVKT LKQNPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKND NQLAMLFTLANLFRVDQMIRQWERSQ >b1994 trs5_6, IS5 transposase MFVIWSHGTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRAKVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b2030 trs5_7, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b2192 trs5_8, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b2982 trs5_9, IS5 transposase MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQILPWQNMV EVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMR LFARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQ GTLVDATIIEAPSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSG LTHSLVTTAANEHDLNQLGNLLHGEEQFVSADAGYQGAPQREELAEVDVD WLIAERPGKVRTLKQHPRKNKTAINIEYMKASIRARVEHPFRIIKRQFGF VKARYKGLLKNDNQLAMLFTLANLFRADQMIRQWERSH >b1184 umuC, SOS mutagenesis and repair MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVK MGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSI DEAFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLAN HAAKKWQRQTGGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGI KTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLEEFAPTKQEIICS RSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFALN EPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDF FSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQW QMKRAMLSPRYTTRSSDLLRVK >b2580 ung, uracil-DNA-glycosylase MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDVFNAFRF TELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTI PGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVIS LINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGC NHFVLANQWLEQRGETPIDWMPVLPAESE >b4058 uvrA, excision nuclease subunit A MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQ RRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGT ITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLML LAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTI EVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSAN FACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPEL SLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYG SGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKF ISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAG QRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQ IGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDA IRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEV PKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLI NDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSN PATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIK VEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFF DAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTG QTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADW IVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML >b0779 uvrB, DNA repair; excision nuclease subunit B MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIA NVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEA YVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGD PDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVI DIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYV TPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGM YRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYE LEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVL VGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKA ILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNL EFEEAAQIRDQLHQLRELFIAAS >b1913 uvrC, excinuclease ABC, subunit C; repair of UV damage to DNA MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQIDVTVTH TETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAK HAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIG RCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLE FEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIR QGKVLGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFN LSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQ QSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLR AEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPP DSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQML LKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH >b3813 uvrD, DNA-dependent ATPase I and helicase II MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVE NCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRA HHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQK DEGLRPHHIQSYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELW LNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDD QSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAEC AILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIAN RNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGE KGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTW QDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATV SRPVSHQRMGTPMVENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQV AFQGQGIKWLVAAYARLESV >b1960 vsr, DNA mismatch endonuclease, patch repair protein MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDASLPGRP DFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRD ISRLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQ GIHLLA >b2051 wcaH, GDP-mannose mannosyl hydrolase MMFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPG GRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFT THYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFL AEKRTGVPGL >b3811 xerC, site-specific recombinase, acts on cer sequence of ColE1, effects chromosome segregation at cell division MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENGLQSWQQ CDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKG VSAPKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLS ELVGLDIKHLDLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFG SEDDALFLSKLGKRISARNVQKRFAEWGIKQGLNNHVHPHKLRHSFATHM LESSGDLRGVQELLGHANLSTTQIYTHLDFQHLASVYDAAHPRAKRGK >b2894 xerD, site-specific recombinase MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATA QSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHL ASPKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVS ELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWL LNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAF ATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPRA >b2509 xseA, exonuclease VII, large subunit MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPASGHWYFT LKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVE SMQPAGEGLLQQKYEQLKAKLQAEGLFDQQYKKPLPSPAHCVGVITSKTG AALHDILHVLKRRDPSLPVIIYPAAVQGDDAPGQIVRAIELANQRNECDV LIVGRGGGSLEDLWSFNDERVARAIFTSRIPVVSAVGHETDVTIADFVAD LRAPTPSAAAEVVSRNQQELLRQVQSTRQRLEMAMDYYLANRTRRFTQIH HRLQQQHPQLRLARQQTMLERLQKRMSFALENQLKRTGQQQQRLTQRLNQ QNPQPKIHRAQTRIQQLEYRLAETLRAQLSATRERFGNAVTHLEAVSPLS TLARGYSVTTATDGNVLKKVKQVKAGEMLTTRLEDGWIESEVKNIQPVKK SRKKVH >b0422 xseB, exonuclease VII, small subunit MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQLARQGQ AKLQQAEQRVQILLSDNEDASLTPFTPDNE >b1749 xthA, exonuclease III MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKL GYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLL GNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMG DMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFR HANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEI RSMEKPSDHAPVWATFRR >b0228 yafM, orf, hypothetical protein MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEI NAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWE HAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDW AGDVTDFSAGERIIS >b0267 yagA, orf, hypothetical protein MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATGYKWLQR WAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWL EDQGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFK GHFPFGGGRCHPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGL PDRMTMDNGSPWGDTTGTWTALELWLMRLGIRVGHSRPYHPQTQGKLERF HRSLKAEVLQGKWFADSGELQRAFDHWRTVYNLERPHEALDMAVPGSRYQ PSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKGVSLSAGKAFRGERVGL KEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC >b0278 yagL, DNA-binding protein MRGKILLYQLKYRWQSLSIFGCFLCKMTLFRYQKIIYDTGVHQMRSFFYT ICSSEQQESITDHHSLAEICQKFNILPEHVVIEQVDIKEVVSEQRLLRQL IHHEMNRQDTLVIPDLSCLGRTVEDLQNILFFCLQKEMFIYSYHPASRIE PSAESCLSFLIARQDTIDIHNLKSTKSRYRHVKKKLGRKEGSKYRRDITI LKKGGFTQAEIAKKLSISLSTVKRHWNNGIIG >b0393 yaiD, orf, hypothetical protein MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMG SHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLK KTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDT LALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSL LEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSL KRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGE AQR >b0442 ybaV, orf, hypothetical protein MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAV PAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTV EDLKQVPGMGNSLVERNLAVLTL >b0454 ybaZ, orf, hypothetical protein MLVSCAMRLHSGVFPDYAEKLPQEEKMEKEDSFPQRVWQIVAAIPEGYVT TYGDVAKLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGTISLTGPDL QRQRQALLAEGVMVSGSGQIDLQRYRWNY >b0544 ybcK, orf, hypothetical protein MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGL SAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIER LKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSS RVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELI FKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGIC VPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLI NLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVD YNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPE VTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELC RTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKY MVDGEIYF >b0706 ybfD, putative DNA ligase MELKKLMEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDF GETHPDFLKQYGDFENGIPVHDTIARVVSCICPAKFHESFINWMLDYHSS DDKDVIAIDGKIHRHSYDKSRRKGAIHVISAFSTMHSLVIGQIKTDKKSN EITAIPELLNMLDIKGKIIKTDAMGCQKDIAEKIQKQGGDYLFAVKGNQG RLNKAFEEKFPLKELNNPKHDSYAISEKSHGREETRLHIVCDVPDELIDF TFE >b0876 ybjD, orf, hypothetical protein MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPES DLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACW TPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHL VRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNL SDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDII NRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLH PIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWR LGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQC GHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNL RKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGR AD >b0892 ycaJ, putative polynucleotide enzyme MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQ NRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELN SALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAI AELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDN KGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS EDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVY TAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYA AGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR >b1100 ycfH, orf, hypothetical protein MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLPGYLHM RDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYY YTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDC GGVLHCFTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRL LVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNF ARLFHIDASRLQSIR >b1360 ydaV, putative DNA replication factor MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCEEINRQN RQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTG CTNFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDD GQSGEKFLRELCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVG MLTNLNYEAMKTLLGERIMDRMTMNGGRWVNFNWESWRPNVVQPGIAK >b1460 ydcC, H repeat-associated protein (ORF-H) MELKKLMGHISIIPDYRQAWKMEHKLSDILLLTICAVISGAEGWEDIEDF GETHPDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSS DDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDEKSN EITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQG RLNKAFEEKFPLKELNNPAHDSYAMSEKSHGREEIRLHIVCDVPDELIDF TFEWKGLKKLCVAVSFRSIIAEQKKELEMTVRYYISSADLTAEKFATAIR NHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVF KAGLRRKMRKAAMDRNYLASVLTGSGLS >b1432 ydcM, orf, hypothetical protein MKRLQAFKFQLRPGGQQECEMRRFAGACRFVFNRALARQNENHEAGNKYI PYGKMASWLVEWKNATETQWLKDSPSQPLQQSLKDLERAYKNFFRKRAAF PRFKKRGQNDAFRYPQGVKLDQENSRIFLPKLGWMRYRNSRQVTGVVKNV TVSQSCGKWYISIQTESEVSTPVHPSASMVGLDAGVAKLATLSDGTVFEP VNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQRLHSCIANIRRDYL HKVTTAVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLNRSIL DQGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKENRLSQSK FRCQVCGYTANADVNGARNILAAGHAVLACGEMVQSGRPLKQEPTEMIQA TA >b1741 ydjQ, putative excinuclease subunit MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGESDTMPLY IGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIK EQQPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRR AALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHE EHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQNWLWLGAVNS LEEATTLIRTPAGFDHDGYKILCKPLLSGNYEITELDPANDQRAS >b1813 yeaB, orf, hypothetical protein MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQPGLLLTQ RSIHLRKHAGQVAFPGGAVDDTDASAIAAALREAEEEVAIPPSAVEVIGV LPPVDSVTGYQVTPVVGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYH PLDIYRRGDSHRVWLSWYEQYFVWGMTAGIIRELALQIGVKP >b2002 yeeS, putative DNA repair protein, RADC family MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFR VLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHP SGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL >b2184 yejH, putative ATP-dependent helicase MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAELARLARG RVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSV ARNLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLT ATPFRLGKGWIYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPE RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAA TRKGVMIFAATVEHAKEIVGLLPAEDAALITGDTPGAERDVLIENFKAQR FRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD CLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANTFWGKTTAD GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDED GADVSERFRLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALL RHPDFVVARMKGQYWQVREKVFDYEGRFRLAHELRG >b2251 yfaO, orf, hypothetical protein MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWAISGGGVEPGERIEEAL RREIREELGEQLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVS ANREVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRLKGLL >b2467 yffH, orf, hypothetical protein MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDRGNGATI LLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKE AIEETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVED EDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYLQTSHLMD >b2510 yfgJ, orf, hypothetical protein MNVEGMATGGIHMELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCH QPLQVLKACGAVDYFCQHGHGLISKKRVEFVLA >b2644 yfjY, putative DNA repair protein MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQAARDWLK LKMAGLEREEFMMLYLNQQNQLIAHETLFAGSISSTEVHPREVVKRALYF NAAAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQ IYSFAEHGLL >b2755 ygbT, orf, hypothetical protein MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVA CIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLL YQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYA LLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGY APAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLA CRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDA GHRSS >b2830 ygdP, putative invasion protein MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGESAEQAM YRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWF LLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKE FASVVMSLQENTPKPQNASAYRRKRG >b3068 ygjF, orf, hypothetical protein MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQAGFTDRQ LKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQ PQALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLE KLVEAYRELDQALVVRGR >b3155 yhbQ, orf, hypothetical protein MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLVF SAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD >b3262 yhdJ, putative methyltransferase MTMRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYNIGKN FDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQC RKLFTIKSRIVWSYDSSGVQAKKHYGSMYEPILMMVKDAKNYTFNGDAIL VEAKTGSQRALIDYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQ KPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAIASGRKFIGIEINSEY IKMGLRRLDVASHYSAEELAKVKKRKTGNLSKRSRLSEVDPDLITK >b3465 yhhF, orf, hypothetical protein MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPV IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA GNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLAD EALIYVESEVENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESDAD >b3484 yhhI, putative receptor MELKKLMEHISIIPDYRQTWKVEHKLSDILLLTICAVISGAEGWEDIEDF GETHLDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSS DDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDEKSN EITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGTQG RLNKAFEEKFPLKELNNPEHDSYAISEKSHGREEIRLHIVCDVPDELIDF TFEWKGLKKLCVAVSFRSIIAEQKKEPEMTVRYYISSADLTAEKFATAIR NHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVF KAGLRRKMRKAAMDRNYLASVLAGSGLS >b0360 yi21_1, IS2 hypothetical protein MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLV ARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQR LLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE >b1403 yi21_2, IS2 hypothetical protein MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLV ARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQR LLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE >b1997 yi21_3, IS2 hypothetical protein MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLV ARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQR LLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE >b2861 yi21_4, IS2 hypothetical protein MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWR KQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEA VEYGRAKKWIAHAPLLPGDGE >b3044 yi21_5, IS2 hypothetical protein MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWR KQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEA VEYGRAKKWIAHAPLLPGDGE >b4272 yi21_6, IS2 hypothetical protein MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLV ARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQR LLGKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE >b0361 yi22_1, IS2 hypothetical protein MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDT DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNA LLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFAL DCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNG SCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPK PDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLE I >b1402 yi22_2, IS2 hypothetical protein MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDT DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNA LLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFAL DCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNG SCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPK PDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLE I >b1996 yi22_3, IS2 hypothetical protein MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDT DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNA LLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFAL DCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNG SCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPK PDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLE I >b2860 yi22_4, IS2 hypothetical protein MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDT DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNA LLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFAL DCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNG SCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPK PDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLE I >b3045 yi22_5, IS2 hypothetical protein MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDT DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNA LLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFAL DCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNG SCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPK PDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLE I >b4273 yi22_6, IS2 hypothetical protein MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDT DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNA LLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFAL DCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNG SCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPK PDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLE I >b4278 yi41, IS4 hypothetical protein MHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAESGTVTLRKRRLP LEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQARQRLG SEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFP RQTHAGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQT GDNTLTLMDKGYYSLGLLNAWSLAGEHRHWMIPLRKGAQYEEIRKLGKGD HLVKLKTSPQARKKWPGLGNEVTARLLTVTRKGKVCHLLTSMTDAMRFPG GEMGDLYSHRWEIELGYREIKQTMQRSRLTLRSKKPELVEQELWGVLLAY NLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLMTLQGASPGRIPELM RDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA >b3557 yi5A, IS150 hypothetical protein MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHG EKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARW LKVYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEDLERQ VRFLETRLMYLKKLKALAHPTKK >b0016 yi81_1, IS186 hypothetical protein MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAY GPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRA AVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDS RDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLR WLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVS LPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQ VADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLID DIIQPSLDFPPRSAGSEKKN >b0582 yi81_2, IS186 hypothetical protein MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAY GPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRA AVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDS RDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLR WLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVS LPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQ VADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLID DIIQPSLDFPPRSAGSEKKN >b2394 yi81_3, putative transposase insL for insertion sequence IS186 MPMNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGL AYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAV RAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELT DSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRG LRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIA VSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSA EQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFL IDDIIQPSLDFPPRSAGSEKKN >b0255 yi91a, transposase insN for insertion sequence element IS911A MICSPQNNTGVIMKKRNFSAEFKRESAQLVVDQNYTVADAASAMDVGLST MTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKAT VDSIGQRNSYVKTWGCGGFLNETNIYSRGKSLCF >b4283 yi91b, transposase insN for insertion sequence element IS911B MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLST MTRWVKQLRDERQGKTPKASPITPEQIEIRKLRKKLQRIEMENEILKRLL >b3647 yicF, putative enzyme MMMKVWMAILIGILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDY WKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHT GVRKMVDKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNG LKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINA RAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQ TYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAE WLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNI GSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFN SLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHRFEHI FSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTR AALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGS WLAAQQITGFEP >b4038 yjbI, orf, hypothetical protein MKKIECACNFLMDKDAQGYIDLSDLDLTSCHFKGDVISKVSFLSSNLQHV TFECKEIGDCNFTTAIVDNVIFRCRRLHNVIFIKASGECVDFSKNILDTV DFSQSQLGHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNL TAVMFDYVRMSTGNFKDCITEQLELTIDYSDIFWNEDLDGYINNIIKMID TLPDNAMILKSVLAVKLVMQLKILNIVNKNFIENMKKIFSHCPYIKDPII RSYIHSDEDNKFDDFMRQHRFSEVNFDTQQMIDFINRFNTNKWLIDKNNN FFIQLIDQALRSTDDMIKANVWHLYKEWIRSDDVSPIFIETEDNLRTFNT NELTRNDNIFILFSSVDDGPVMVVSSQRLHDMLNPTKDTNWNSTYIYKSR HEMLPVNLTQETLFSSKSHGKYALFPIFTASWRAHRIMNKGV >b4308 yjhR, putative frameshift suppressor MGYLHIDGRGMKPNGGSRHNPLEAETIAAWLVAHKDDIERHYGEPLYKVV GVVTPFSAQVNAIKMSLRKLEINGKDEQGLLTVGTVHSLQGAERAIVLFS PVYSKHEDGRFLDSNSTILNVAVSRAKDSFLVFGDMDLIEMQPAFSPRGL LAKYLFSSDNNALQFEFQKRQDLISAHTQISTLHGVEQHDEFLNKTLAGA QKKITIISPWLSWQKVEQTGFLASMALARSRGIDITVVTDKNCNIAHVDD DKRQEKQHLLNDAVEKLNKMGIATKLVNRVHSKIVIEDEELLCVGSFNWF SATREDKYQRYDTSLVYRGEGVKNEIKAIYGSLDQRQL >b4378 yjjV, orf, hypothetical protein MLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEI GLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRH DLPRTGVVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLP LASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQAL LNNTYTLFNVP >b0258 ykfC, orf, hypothetical protein MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDG VNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPA LRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCG ETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHI DVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYW NNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQ EKARNFAASLTALLWKVRISGEILLG >b0247 ykfG, putative DNA repair protein MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLH MAALEREEFRVLYLDNQNQLIAHETLFTGTINRTEVHPREVVKRALHFNA AAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIY SFAEHGLL >b1134 ymfB, putative Nudix hydrolase MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAAR ELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSD IDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTK GVI >b1808 yoaA, putative enzyme MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTG KTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL KGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVS VAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHL FLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK EINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS VNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSAR QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR >b2949 yqgF, orf, hypothetical protein MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLK EWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLST VEARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY >b3034 yqiE, orf, hypothetical protein MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQMSHEVR REIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIE EGESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDA TTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLH HQALKNEWA >b3148 yraN, orf, hypothetical protein MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEI DLIMREGRTTIFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHN GSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS >b3283 yrdD, putative DNA topoisomerase MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSS ADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPD ETAITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPEC HYPLLIEKKTAQGVKHFCASKQCGKPVSAE >b3397 yrfE, orf, hypothetical protein MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRPTNREAV MIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEV GFGANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRW PLAHMMDLLEDPDFNEARNVSALFLVREWLKGQGRV