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# Streptococcus pyogenes M1 GAS, SF370

>SPy0339 hypothetical protein
MMKPIDTFTYLKRNKVTLDSVTLIQLYFPIIGSDAVSIYQYFIHFFDDGL
QRHKFSDILNHLQFGMKRFEDALAILTAMELVSVYQLSDTYLITLHQPLS
RDLFFQHPAYSRLLEQKIGEVAVSELQVTVPSQARNISKRFSDIFGVQGD
LTNVPQKPQKNFDLSSFQQLMVRDGLQFEDNQKDIISLYSIAEQYDMTWF
DTYQIAKATAVNGKIRPERLLAKKNQSMTKPSKENFSQAEQIILREAKQD
SALVFLEKIKKARRATITKDERILLQTLAKMNFLDDVINVMVLYTFNKTK
SANLQKSYVLKMANDFAYQKVSTAEEAIVVLRAFTDRQSRRQSKVKTSQS
NVPKWSNPDYQETTSQEEQAKLDQFKQAALKRLENLGKGGD
>SPy0477 conserved hypothetical protein
MPQDYISYIRSKVGHDKIILNFAGGILTNDDGKVLMQLRGDKKTWTIPGG
TMELGESSLETCKREFLEETGIEVEAVRLLNVYTHFEEVYPNGDAVQTIV
FIYELTAVSDMAIDNFHNEETLKLQFFSHEEIAELESVSAKHRLMLEEYF
SDSFAMGH
>SPy1412 conserved hypothetical protein
MTTKKAYMYVLECVDKTLYTGYTTDLKKRLATHNAGKGAKYTRYRLPVSL
LYYEVFDSKEAAMSAEALFKKRKTRSQKLAYIATHQKEKKNH
>SPy1841 putative ribonuclease HIII
MNTLVLKIDAILSKHLKKQLAPYTISSQNTYVAFAAKKNGVTVLLYKSGK
LVLQGNGANALAQELNLPVAKTVFEASNNSQDIPIIGSDEVGNGSYFGGI
AVVASFVDPKDHSFLKKLGVDDSKKLSDKTIQQIAPLLEKQIPHQSLLLS
PKKYNELVGKSKPYNAISIKVALHNQAIFLLLQKGIQPKQIVIDAFTSQS
NYEKHLKKEKNHFPNPLTFQEKAESHYLAVAVSSIIARNLFLDNLDQLGQ
DLGYQLPSGAGSASDKVASQLLAAYGMSSLEYSAKLHFANTHKAQALLTK
>SPy0108 conserved hypothetical protein
MTFEKIEEAYQLLLENCQLIENDLKTHIYDAIVEQNSFYLGAEGASPQVA
QNSDKLKALCLTKEEWRKAYQFLFIKAAQTEQLQANHQFTPDAIGFILLY
LLEQLSDKDSLEVLEIGSGTGNLAQTLLNNTSKSLDYVGIELDDLLIDLS
ASIAEIMDSSAHFIQEDAVRPQLLKESDIVISDLPVGYYPNDDIAKRYKV
ASSDKHTYAHHLLMEQSLKYLKKDGFAIFLAPVNLLTSPQSQLLKQWLKD
YAQVVTLITLPDSIFGHPSNAKSIIVLQKQTDHPMETFVYPIRDLKLAEN
IHDFMENFKKWKLSNVN
>SPy2113 conserved hypothetical protein
MRIMGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVK
QYQVEQFVIGLPKNMNNTNGPRVDASITYGNHIEHLFGLPVHYQDERLTT
VEAKRMLIEQADISRGKRKKVIDKLAAQLILQNYLNRNF
>SPy1160 hypothetical protein
MIFPSLPYWKDLPDLDLYLDQVLLYVNQCTDFSEVSDNKSLTASMINNYV
KHGYVTKPIKKKYQKQQLARLIAISLFKTVFPIQDISRVLEELQAQADSE
SLYNTFVTCWNQKAPIEEDIPPIVQVACQTVKDYHKTIYLLQEVTQ
>SPy1659 putative ATP-dependent RNA helicase
MSFKDYHFKQYVQQALEEIGFVNPTEVQKRLIPIVNSGRDLVGESKTGSG
KTHTFLLPIFEKLDEAKAEVQVVITAPSRELATQIFDACKQIAKHFQEEI
RLANYVGGTDKLRQIEKLKDSQPHIVIGTPGRIYDLVKSGDLAIHKATTF
VVDEADMTMDMGFLDTVDKIAASLPKSVQILVFSATIPQKLQPFLKKYLT
NPVIEQIKTKTVIADTIDNWLVSTKGRDKNGQLLEILKTMQPYMAMLFVN
TKERADDLHAFLTANGLKVAKIHGGIPPRERKRIMNQVKKLDFEYIVATD
LAARGIDIEGVSHVINDAIPQDLSFFVHRVGRTGRNGMAGTAITLYQPSD
DSDIKELEKMGIAFTPKVLKNGEFQDTYDRDRRQNREKAYQKLDTEMIGL
VKKKKKKVKPGYKKKIQWAVDEKRRKERRAENRAKGRAERKAKKQHF
>SPy0550 hypothetical protein
MSLQKRRITMAKTGTLNLRVDDSVKSAADDILKRLGIPMSTAIDMFLNQI
ILTGGIPFDVSLPEAPQRVNVDYMSQEKFYDKLITSFEDAKTCNPQDVGK
FYFQ
>SPy1992 conserved hypothetical protein
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGI
GKTSIASAIAGTTRYAFRTFNATIDSKKRLQEIAEEAKFSGGLVLLLDEI
HRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPL
SNEDIKTAIQLAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLD
LAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHYDVLSALQKSI
RGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTA
LDAAQRIGFPEARIPIANVVIDLALSPKSNSAYLAMDAALADLRTSGNLP
IPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD
>SPy1561 conserved hypothetical protein
MMVLVTYDVNTETPAGRKRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVD
IKHRLTQIIDEKTDSIRFYLLGKNWQRRVETLGRSDSYDPDKGVLLL
>SPy1830 putative single strand binding protein-phage associated ?
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFIN
CVIWRQPAENLANWAKKGALIGVTGRIQTRNYENQQGQRVYVTEVVADNF
QMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQTPNFGRDDSPFGN
SNPMDISDDDLPF
>SPy0673 conserved hypothetical protein, phage associated
MIEFFLPMDKIPTTTHQQKKVTVINGKPHFYEPESLKNARDKFTSLLAQH
VPPSKLDGPIRLTVKWLFPKIKGSTNGQYKTTKPDTDNLQKLLKDCMTEL
GFWNDDAQVASEIIEKFWADTVGIYVKVEEL
>SPy1047 hypothetical protein
MAGWRTVVVNTHSKLSYKNNHLIFKDAYKTELIHLSEIDILLLETTDIVL
STMLVKRLVDENVLVIFCDDKRLPTAMLMPFYGRHDSSLQLGKQMSWSET
VKSQVWTTIIAQKILNQSCYLGACSYFEKSQSIMDLYHGLENFDPSNREG
HAARIYFNTLFGNDFSRDLEHPINAGLDYGYTLLLSMFAREVVVSGCMTQ
FGLKHANQFNQFNFASDIMEPFRPLVDKIVYENRNQPFPKIKRELFTLFS
DTFSYNGKEMYLTNIISDYTKKVVKALNNEGKGVPEFRI
>SPy1562 conserved hypothetical protein
MKKLLNTLYLTQEDFYVTKEGDNIVIKQEGKVLKRFPFRIIDGIVCFSYL
GVSSALVKLCTENQINLSFHTPQGRFCGRYIGSTNGNVLLRREHYRLSDR
EESLEYAKRFILAKISNSRKYLLRFKRDHRQQIDTKLFEAVNDELIWALE
MVQAADNKDSLRGIEGQAANQYFRIFNDLVLTDKKTFYFQGRSKRPPLDC
VNALLSFGYSLLTFECQSALEAVGLDSYVGFFHTDRPGRASLALDLVEEF
RSYIVDRFVFSLINKGQLQKKHFEVKENGSILLTENGRAIFIDLWQKRKH
TEVEHPFTKEKVKLMLLPYVQAQLLAKAIRGDLESYPPFMV
>SPy0198 putative transposase, IS861
MLLEILDLSRSTYYYQVKRLAQGDKDIELKHVIREIYDEHKGNYGYRRIH
MELRNRGFVVNHKKVQRLMKVMGLAARIRRKRKYSSYKGEVGKKADNLIK
RHFEGSKPYEKCYTDVTELALPEGKLYLSPVLDGYNSEIIDFTLSRSPNL
KQVQTMLEKTFPADSYSGTILHSDQGWQYQHQSYHDFLESKGILASMSRK
GNSPDNGMMESFFGILKSEMFYGLETTYQSLDKLEEAITDYIFYYNNKRI
KAKLKGFSPVQYRTKSFQ
>SPy1335 conserved hypothetical protein-transposon IS861 associated
MKFNQETKVKIYELRQMGESIKSISKKFDMAESDLKYMIRLIDRYGVTIV
QKCKNHYYSPELKQEIINKVLIDGQSQKQTSLDYALPTSSMLSRWIAQYK
KNGYTILEKPRGRPSKMGRKRKKNLEEMTEVERLQKELEYPRAENAVLKK
LREYRLRDEAKLKEQQKSFKH
>SPy0971 putative terminase, small subunit-phage associated
MDWRWWKIAYEELTEKQQRFVDKYITTFNATESAKQAGYSEKSAYSQGQR
LLKNVEIQKAMKERFLEAKDTKGDRIQDVAETLEQDTSIARGEIQISEFK
ETDMLTGQVVIHTKREYTPSHEEQGRARDRIYKVNGAYSEKRELEHSGTV
VFANEDNIPD
>SPy1844 putative exodeoxyribonuclease V (alpha subunit)
MEYVFTGTVDRIIFENQANFFKILLLAIEDTDSDIDDFEIIITGTMADII
EGDDYTFWGELTQHPKYGQQLKLSRYQKIKPSSSGLVNYFSSDHFKGIGK
KTAEKIIALYGHNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTE
QLIAGLVELGLSNRFALQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMA
DALAENLGIESDSPKRFRAALLHCLLEESINRGDTYVQARQLLDFAITLL
EDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIANNIS
RLLDTPLSQSFSHDTIQTTIQAVQKDFAITYDQVQQEAITKALTSKVFLL
TGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLG
AINSTTQVIIVGDSDQLPSVGPGQVLSDLLKVNSLPQIALQKIFRQSQES
TIVNLADQMRRGILAADFRDKKADRSYFEAQAAFIPDMIQKIVLSAIKSG
IPAEEIQILAPMYKGQAGINHLNQLMQELLNPLQGQTEFLFNDTHFRKGD
KVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILDFDGSEVTYPR
NEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNVIYTAITRSK
SKLILLGEYTAFEYAIKHEGDKRQTYLIERFQEQSDLASSQPNQELKSKE
QTSLFSNTATLEDDSQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS
MIGLTESDIALFFQKKS
>SPy0671 hypothetical protein, phage associated
MTDDKFDLLPLLDYIDPSKLSYQDWVNVGFALKHEGYTAMDWDIWSQSDS
RYKKGECFAKWDSFQGNGLGTVTGATITQLAKENGWTSDYRTSDEAHELD
WDSTIDRDYKIIDKNWIEAKEIREPTNWSPVHDLITYINTLFESTDKVGY
VTETYPIEIDKGIIYKPTKGAYDRTAGQLIQELQKNPNDIGAVLGDYKEE
AGAWIRFNPLDGNGVKNDNVTDFRYALVESDSMELGKQYALFKELELPIA
TLVHSGKKSLHAIVKVDAKDYQEYRKRVDYIYQICKKNGLDIDTQNRNPS
RLSRMPGIMRNGHKQFLIDTNIGKTNYEEWYQWIEDLNDDLPEPETLADE
WDNLPELAPELIKGVLRQGHKMLIAGPSKAGKSFALIELSIALAEGQKWL
GWQCEQGKVLYVNLELDRPSALHRFKDVYDAMGLPPANVANIDIWNLRGK
TVPMDKLAPKLIRRSLKKNYQAVIIDPIYKVLTGDENSADQMAHFTNQFD
KVATELGCSVIYCHHHSKGSQGGKKSMDRASGSGVFARDPDALIDLVELE
LTEDLIKARSEKAAAKIYQQALQEKALGYYQQEVTLDDLESRYQMQQHFD
KAIKDIMVKQPYLEAVKKAQHEVEIATAWRVDGTLREFAKFQPVNMWFSY
PKHEVDTTGVLADIQLEDSKPLWKKAKEARKSKEENLKERNQKLETAYSA
LFDGSTPVTVQEIREYLDLKSNKSVENYIKEHDGYDVKKGVVFQISDNKE
TEKKENN
>SPy0195 conserved hypothetical protein
MPRKTFDKAFKLSAVKLILEEEQSVKMVSSTLEIHPNSLYQWIQEYEKYG
ESAFPGHGSALRHAQFETKKLEKEHKLLQEELALLKKFQVFLKPNRK
>SPy0444 conserved hypothetical protein
MKFEEKTLKRQTVFDGHIFKVVVDDVELPNNLGQSKRELIFHRGAVAVLA
ITPERKIVLVKQYRKAIERVSYEIPAGKLEIGEEGSKLKAAARELEEETA
YTGTLTFLYEFYTAIGFCNEKITLFLATDLIQVANPKPQDDDEVIEVLEL
TYQECMDLVAQGKLADAKTLIALQYYALHFGGEQ
>SPy1563 conserved hypothetical protein
MVYAEDDYLMLSGIQHFQFCKRQWALIHIEQQWLDNEATAHGQVLHTKAD
NPYIKEKRKELLVSRAMPISSAELGLSGIMDVVEFYKDDQGVSLRGKRGK
WLPKVVEYKRGKPKKDTRDIVQLVAQTMCLEETLDCDINEGCLYYHSVNQ
RVIVPMTSALRQEVKELAAEMHEVYQSQMLPKAAYFKNCQLCSLVDICKP
RLSKKTRSVSRYINEAMTSEEMDL
>SPy2180 putative transposase
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLVFVCQLAGIETWKEMED
FIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSDRLKELKVQFEQSLTS
LDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSN
EIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQE
TLYDDIALYFSDATLLEELQENTQYYQTVEKSRGQIEVREYWVSSDIKWL
CQNYPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKK
DLSYRRKQRYISVHLEDYLVQLFGERG
>SPy0679 conserved hypothetical protein, phage associated
MEFVDKKLSEITPYKNNPRNNDEAVGPVAESIKEFGFKVPIVVDKNGEIV
NGHTRYKAAQKLGLETVPVIVADDLSEEQIKAFRLADNKVGEIAVWDLDL
LNEELNDILDLDMSAFGFDVLDNLDDLIEDEKDLDDFTGTVPDEPKSKLG
DIYQLGSHKLMCGDSTNGADVKKLMNGELADLLLTDPPYNVAYEGKTKDS
LTIKNDSMDNDSFRQFLVNAFSSANEVMKPGAVFYIWHADSEGYNFRGAC
FDIGWTVRQCLIWNKNSMVLGRQDYHWKHEPCLYGWKDGAGHLWASDRKQ
TSVIDYEKPQRNGVHPTMKPVGLFDYQIKNNTKGSDIVLDLFGGSGTTLI
ACESNGRHARLMEYDPKYVDVIIKRWEELTGESVIQLN
>SPy0260 conserved hypothetical protein
MWLRSLCYNNIMTNKVEKLTIFDTHTHLNVAEFQGHETEELTLAQEMGVA
YHNVVGFDQATISGALTLANKYANIYATIGWHPTEAGSYSEAVEEAIVSQ
LSHSKVIALGEIGLDYYWMEDPKEVQIEVFKRQMQLAKDHDLPFVVHTRD
ALEDTYEVIKAAGVGPRGGIMHSYSGSLEMAERFIELGMMISFSGVVTFK
KALDIQEAAQHLPLDKILVETDAPYLTPVPKRGKQNHTAYTRYVVDKIAE
LRGMTVEEVAKATTANAKRVFKLD
>SPy0732 conserved hypothetical protein
MSAIIRQSTSKRISDKRGIYLVEKLVSLAKQSYFTVTKTSPMIEEVRYYA
KELLRLSERRQAIFDKMVASAQPLPEDKILRSIPSIVETTATSIIGELGA
IRRFQSANQINAFIGIDFRHYESGNYLAQEHITKRGNPYAPKILFKCIHD
IAFASHTNPCHIADFYEKRKRQSQTASTKPHTIASRHCLVRQCFTS
>SPy2186 hypothetical protein
MIVRNGKNFLTRDADDQYYTIGGTSLVGEKTHETVLRETLEEVGIRAKVN
QLAFMVENHFDIDDVFWHNIEFHYLVSPLEDPKLEMIENASDRFVNGFQS
INWIK
>SPy0130 hypothetical protein
MKKSILRILAIGYLLMSFCLLDSVEAENLTASINIEVINQVDVATNKQSS
DIDETFMFVIEALDKESPLPNSVTTSVKGNGKTSFEQLTFSEVGQYHYKI
HQLLGKNSQYHYDETVYEVVIYVLYNEQSGALETNLVSNKLGETEKSELI
FKQEYSEKTPEPHQPDTTEKEKPQKKRNGILPSTGEMVSYVSALGIVLVA
TITLYSIYKKLKTSK
>SPy0133 conserved hypothetical protein
MTIRLNDLGQVYLVCGKTDMRQGIDSLAYLVKSQHELDLFSGAVYLFCGG
RRDRFKALYWDGQGFWLLYKRFENGKLAWPRNRDEVKCLTAVQVDWLMKG
FFISPNIKISKSHDFY
>SPy0303 putative transposase, IS1548
MIDFIISIDDCAVELDSRQSWKIRSPLSTILFLVFVCQLAGIETWKEMED
FIEMNEPLFATYVDLSEGCSSHDTLERVISLVNSDRLKELKVQFEQSLTS
LDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSN
EIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQE
TLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWL
CQNHPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKK
DLSYRRKQRYISVHLEDYLVQLFGERG
>SPy2145 hypothetical protein-phage associated
MNKKNAIRKLKEFHRWQRIANSLDLTYTELYQFDIEYHPTRRKHLEISRE
CALEELDAIRYAINQLSKVEYRQILIECYLISEEKTQQDIMEELNGSQSW
YYESKKRALLEFVEFYRDGALKNNVHL
>SPy0365 hypothetical protein (possible integrase/recombinase)
MKSYIEPFIASKALSQNSQKAYRYDLQQFCQLIGERVNQDKLLLYQNSIA
NLSLSAKKRKLSTANQFLYYLYQIKYLNSYFRLTDTMKVMRTEKQQAAII
NTDIFYQKTPFVWGQLISLLILELGLTPSEVAGIEVANLDLNFQMLTLKT
KKGVRVLPLSQILIPFLEQQLVGKEVYLFEHRGIPFSRQWFFNHLKTFVR
SIGYEGLTAQKLREQFILKEKLAGKSIIELSDILGLKSPMTLEKYYKS
>SPy2170 hypothetical protein
MKDLLKQYQAKPLGEEKRYAVFLPLILVNDDWHVLYEVRSQHISQPGEVS
FPGGQVENQETLQEAAIRETVEELTVDASQIQLWGEIDYLVQSSRTIHCF
VGQLVVDDWKSIQPNEEVDKVFIVPLRQLLFTDPVYYRLEVTPIETTDFP
FDRIRNGKYYQFSQEYRSIPFYENLEETIWGMTAQFTKCLTDILNDESIA
KKNPSDIEKSKGR
>SPy0261 conserved hypothetical protein
MTEKINIQEVLVVEGKDDTANLRRFYEVDTYETRGSAITEEDLERINRLN
DLRGVIVLTDPDYNGERIRKLIMAAVPTARHAFLNRNEAVPSSKSKGRSL
GVEHANFEDLQKALAHVTQQYDDESYFDIRQTDLIRLGLLMASDSRKRRE
YLGEKLRIGYANGKQLLKRLELFGITLAEVEEVMETYEE
>SPy0131 conserved hypothetical protein
MTRTNYQKKRMTCPVETEDITYRRKKIKGRRQAILAQFEPELVHHELIGD
SCTCPDCHGTLTEIGSVVQRQELVFIPAQLKRINHVQHAYKCQTCSDNSL
SDKIIKAPVPKAPLAHSLGSASIIAHTVHQKFTLKVPNYRQEEDWNKLGL
SISRKEIANWHIKSSQYYFEPLYDLLRDILLSQEVIHADETSYRVLESDT
QLTYYWTFLSGKHEKKGITLYHHDKRRSGLVTQEVLGDYSGYVHCDMHGA
YRQLEHAKLVGCWAHVRRKFFEATPKQADKTSLGRKGLVYCDKLFALEAE
WCELPPQERLVKRKEILTPLMTTFFDWCREQVVLSGSKLGLAIAYSLKHE
RTFRTVLEDGHIVLSNNMAERAIKSLVMGRKNWLFSQSFEGAKAAAIIMS
LLETAKRHGLNSEKYISYLLDRLPNEETLAKREVLEAYLPWAKKVQTNCQ
>SPy0948 conserved hypothetical protein-phage associated
MLNIDTQFVDTIGKILSDYVSHSEITRMGEVLGYPQNDQNSGFNKHKRVH
NLVSDILNRTQNTDNIKLVIEYVCNPLRYINEVSIFEQLRTAINIPLSLK
GLIVSDSGQIVTTTTSKTLSEAKKRFETLDSRLKELKVHPHVLKFCTQEL
LQENYFHAVFEASKGVFHRIRLLTGSAMDSASLIDQCFKPGEPIVIINGN
KLQTLDEQSEYKGLKNLLLAIAHLYRNSKAHKLKYYNPDNLNDALTALTL
MSLAHNLLDSCSNTRRLD
>SPy1538 conserved hypothetical protein
MRVVSGEFGGRPLKTLDGKITRPTSDKVRGAIFNMIGPYFNGGRVLDLFA
GSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA
ERAIDCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK
TVLLPKEIATLGIWKEKIYGISKVTVYVN
>SPy1077 putative methyl transferase
MKFLDLFAGIGGFRLGLINQCHECIGFCEIDKFARQSYKAIYETEGEIEF
HDIRQVTDQDFRQLRGQVDIICGGFSLVKHFHSQADDWDLRALGELSSLR
LLERPNR
>SPy1477 putative recombinase-phage associated
MTNQLAQNNHNSFFKSPAVKNRIEQVVGARAEQFTTSLLSIISNNNLLAK
ATSESIMGAAMKAAVLNLPIEPSLGFAYVVPYNRNYKDGNRWITVNEAQF
QIGYRGLIQLAQRSGQVRNIEHGIIYEEEFLGYDKIRGQLKLTGDYVDSG
VVKGYFASLELISGFYKMIFWPKEKVYEHAKKYSKTFDKKTGDFKPGTPW
ATEFDPMAIKTLLKELLSKYAPLSVEMQDALEADNADSTIVIPKDVTPQE
TNSLDDLIGTQNEKKDAPSNLKDVIKDLHSEPEKTLTDENKTVLEDTSYP
ADEIPDFDQETGEIKASEGNLFDNLGDLI
>SPy1574 putative transposase-IS1548
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLGFRWQVAGIETWKEMED
FIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSDRLKELKVQFEQSLTS
LDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSN
EIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQE
TLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWL
CQNYPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKK
DLSYRRKQRYISVHLEDYLVQLFGERG
>SPy0669 putative DEAD box family helicase, phage associated
MQLRPYQEEARSAVQHEWEDGKKRTLLVLPTGCGKTIVFSKIIEDRVRLG
ERVLVLAHRSELLEQASDKLMTATGLGTALEKAENTSLGSWFRVVVGSVQ
TMQREKRLSKFPTNHFDTIIIDEAHHAISDGYQRVLQHFDSSNVLGVTAT
PDRGDKQNLGKYFDSLAYEYSLVDAIKSGYLSKITAVTIPLTLDLSTVSQ
QAGDFKASEIGTALDPYLEQIADEMVKQCANRKTVVFLPLVKTSQKFRDI
LNQKGFKAAEVNGESKDRAEVLEDFDNDKYNVLCNSMLLTEGWDCPTVDC
VVVLRPTKVRALYSQMVGRGTRLAPGKENLLLLDFLWHTERHELCRPAHL
IAKTPEVAQKMVDNMTEETEVTFELLEAEEVASKDVVAEREEALAKQLAE
MRKRKRALVDPLQFEMSINAEDLVDYVPEFGWEMAPVSDKQKNALEKFGI
FTDDIGNAGKATKLLERLAKRRETGLTTPKQIRMLERYGFKNVGMWKFEV
ASNMINRIAASGWRLPKGINAREYQPE
>SPy1054 putative collagen-like protein
MLTFGGASAVKAEENEKVREQEKLIQQLSEKLVEINDLQTLNGDKESIQS
LVDYLTRRGKLEEEWMEYLNSGIQRKLFVGPKGPAGEKGEQGPTGKQGER
GETGPAGPRGDKGETGDKGAQGPVGPAGKDGQNGKDGLPGKDGKDGQNGK
DGLPGKDGKDGQDGKDGLPGKDGKDGQNGKDGLPGKDGQPGKPAPKTPEV
PQNPDTAPHTPKTPRIPGQSKDVTPAPQNPSNRGLNKPQTQGGNQLAKTP
AAHDTHRQLPATGETTNPFFTAAAVAIMTTAGVVAVAKRQENN
>SPy0199 conserved hypothetical protein, IS861 associated
MKFNQETKVKIYELRQMGESIKSISKKFDMAESDLKYMIRLIDRYGVTIV
QKCKNHYYSPELKQEIINKVLIDGQSQKQTSLDYALPTSSMLSRWIAQYK
KNGYTILEKPRGRPSKMGRKRKKNLEEMTEVERLQKELEYPRAENAVLKK
LREYRLRDEAKLKEQQKSFKH
>SPy1564 conserved hypothetical protein
MLEHKIDFMVTLEVKEANANGDPLNGNMPRTDAKGYGVMSDVSIKRKIRN
RLQDMGKSIFVQANERIEDDFRSLEKRFSQHFTAKTPDKEIEEKANALWF
DVRAFGQVFTYLKKSIGVRGPVSISMAKSLEPIVISSLQITRSTNGMEAK
NNSGRSSDTMGTKHFVDYGVYVLKGSINAYFAEKTGFSQEDAEAIKEVLV
SLFENDASSARPEGSMRVCEVFWFTHSSKLGNVSSARVFDLLEYHQSIEE
KSTYDAYQIHLNQEKLAKYEAKGLTLEILEGL
>SPy2013 transposase-IS1562
MLHKEKPDYNRNQYGFYTLDQLVPDEHFLRQVEAVIDFDFIYDLVEDTYS
SDNGRPSLDPVMLVKIPLIQCFYGIRSMRQTIKDIEVNTAYRWFLGLTLD
DKVPHFTTYGKNYSRRFQEKGLIESIFTHIVGLCINTGLIDPTEIFIDGT
HIKAAANNRKFINREVEKQAKFMSEQLEIEINRDREKHGKKPLGPAKELE
PVAKKISTTDPESGWFHKGDHKEVFAYSAQVACDKYGWALAYSVEAGNIH
DSQAFPALFAKLEPLKPQFIIADSGYNVPSIAKFLIDKEITPVLPYTRPR
GKKDLLRPKELIYDEHFDCVICPEHQALTYRTTTREGYREYKSDPVICAN
CPLLSVCTTSKNYQKVVTRHIWKDYLAQPRNTTISAIRERKASPKWKIRL
D
>SPy1807 putative transposase-IS1548
MIDFIISIDDCAVELDSRQSWKIRYPLSTILFLVFVCQLAGIETWKEMED
FIEMNEPLFATYVDLSEGCPSHDTLERVISLVNSDRLKELKVQFEQSLTS
LDAVHQLISVDGKTIRGNRGKNQKPVHIVTAYDGGHHLSLGQVAVEEKSN
EIVAIPQLLRTIDIRKSIVTIDAMGTQTAIVDTIIKGKADYCLAVKGNQE
TLYDDIALYFSDVNLLEELQENAQYYQTVEKSRGQIEVREYWVSSDIKWL
CQNHPKWHKLRGIGMTRNTIDKDGQLSQENRYFIFSFKPDVLTFANCVRG
HWQIESMHWLLDVVYHEDHHQTLDKRAAFNLNLIRKMCLYFLKVMVFPKK
DLSYRRKQRYISVHLEDYLVQLFGERG
>SPy0472 conserved hypothetical protein
MDDLTKAIMADEANLSYTERGIFPLYDAPQTARIIIVGQAPGIVAQGTKL
YWNDRSGIRLRDWLGVDNDTFYHSGLFGIIPMDFYYPGKGKSGDLPPREG
FAAKWHPPLRALMPEVELTILVGRYAQDFYLGNKAYKTLTETVRHFEDYL
PDYFPLVHPSPRNQLWLAKNPWFEQDLLPILQKRVEAILTK
>SPy1644 conserved hypothetical protein
MKETFRLVATAAAGLEAVVGKEVRALGFDCQVENGKVYFEGDVEAIVKTN
LWLRAADRIKIIVGQFPARTFEELFQGVFALDWENYLPLGAKFPISKAKC
VKSKLHNEPSVQAITKKAVVKKLQKHFHRPEGVPLQEVGSTFNIEVSILK
DQATIMIDTTGSSLFKRGYRVQKGGAPIKENMAAAILALSNWFPDKPLVD
PTCGSGTFCIEAAMIGMNIAPGFNRSFAFEEWSWVDKDMVQQVRDDAEQE
ANYEIELDISGFDIDGRMIEIAKSNAEEAGLSDVITFKQMRLQDFRTDKV
NGVVISNPPYGERLLDDKAVDILYNEMGQTFAPLKTWSKFILTSDELFEL
KYGQKADKKRKLYNGTLKVDLYQFYGERVKRHLI
>SPy1196 putative integrase/recombinase
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFD
WLMDADLTQAPKIADIDLSTLEHLTKKDLEAFVLYLRERPSLNTYSTKEG
LSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETL
ASRAENIKQKLFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAI
IALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDSVNVAGFAKGY
LESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFK
IRVTPHKLRHTLATRLYDATKSQVLVSHQLGHSSTQVTDLYTHIVNDEQK
NALDNL
>SPy0683 putative minor capsid protein, phage associated
MKKKPIKLNDEQLLLEASQLSDMYHQLTLDLFDQVIERIKARGSASLADN
PYLWQANKLHDVGLLNADNIKLIAKYSGIAEAQLRYIIKNEGFKIYKNTS
EQLEEALGRESGVNSTIQDDLSNYARQAIDDVHNLTNTTLPFSVIGAYQG
IIQDAVAGVVTGLKTPDQAINQTVIKWFKKGFYGFTDKAGRKWRADSYAR
TVINTTTWRVFNEAKEAPAREFGIDTFYYSKKATAREMCAPLQHQIVTTG
EAREEGGIKILALSDYGHGEPDGCLGINCKHTKTPFVVGVNSKPELPEHL
KNITPAQAKANANAQAKQRAIERSIRKSKELLHVAKQLGDKELIRQYQSD
VRSKQDALNYLINNNAFLHRNQAREKRYNNPYTKTQSEVEVRKEKAKLDK
RRDVESAIIGVETSEGIPLKITKHLAERAVLRNIAPIDIVDSIKEPLKIA
PIKYDNLDRPSQKYIGKCVSTVINPIDGNIVTVHATSTRIRKKYGGN
>SPy0400 putative DNA polymerase III delta' subunit
MDLAQKAPNVYQAFQTILKKDRLNHAYLFSGDFANEEMALFLAKVIFCEQ
KKDQTPCGHCRSCQLIEQGDFADVTVLEPTGQVIKTDVVKEMMANFSQTG
YENKRQVFIIKDCDKMHINAANSLLKYIEEPQGEAYIFLLTNDDNKVLPT
IKSRTQVFQFPKNEAYLYQLAQEKGLLNHQAKLVAKLATNTSHLERLLQT
SKLLELITQAERFVSIWLKDQLQAYLALNRLVQLATEKEEQDLVLTLLTL
LLARERAQTPLTQLEAVYQARLMWQSNVNFQNTLEYMVMSE
>SPy1336 putative transposase-IS861 associated
MLLEILDLSRSTYYYQVKRLAQGDKDIELKHVIREIYDEHKGNYGYRRIH
MELRNRGFVVNHKKVQRLMKVMGLAARIRRKRKYSSYKGEVGKKADNLIK
RHFEGSKPYEKCYTDVTEFALPEGKLYLSPVFDSYNCEIIDFTLSRSPNL
KQAQTMLEKTFPADSYSGTILHSDQGWQYQHQSYHDFLESKGILPSMSRK
GNSPDNGMMDSFFGILKSEMFYGLETTYQSLDKLEEAITDYIFYYNNKRI
KAKLKGLSPVQYRTKSFQ
>SPy0021 conserved hypothetical protein
MQLTESLGIVLFNRNYREDDKLVKIFTEVAGKQMFFVKHISRSKMSSIIQ
PLTIADFIFKLNDTGLSYVVDYSNVNTYRYINNDIFRLAYASYVLALADA
AIADNESDSHLFTFLKKTLDLMEEGLDYEILTNIFEIQILDRFGISLNFH
ECAICHRTDLPLDFSHRFSAVLCSEHYYKDNRRNHLDPNVIYLLSRFQKI
TFDDLRTISLNKDIKKKLRQFIDELYHDYVGIKLKSKTFIDNLVKWGDIM
K
>SPy0928 conserved hypothetical protein
MSFLEHYKSGNLVIPSALLFHYKDLFKSSDDFLVWQFFYLQNTTKRDDLA
PSQIAHALGKSVADINKIISSLTNQGLLDMRTIELTGEIEIIFDASPVLA
KLDQLFVSQTATEIDKQETPNHFKRLVDEFERELGRFLSPFELEDLEKTL
RDDKTDPDLIREALKEAVFNGKTNWKYIQAILRNWRKEGIVNLRQVEERR
RVREGEDLSQVTISEDFLSAMNLWSDS
>SPy1409 comEA, putative competence protein
MLDELLIKGKSFLRERYFLPYLISLLLGLFLILSFSFLFWGNRQSKAAVP
ALREISPVKQQVSEEKKEIQEDSSILVDLKGAVQKEGVYKLTASSRVRDV
IELAGGLTSEADKHAINFAEKLTDEQVVYVPKQGEEISVLPRSLVSGKKE
TASKDQSKVHINKASLEELQHIPGIGAKRAQDIIDMRDKLGGFKALEDLR
QVSGIGEKTLEKLKDDIFLD
>SPy1616 comFA, putative late competence protein required for DNA uptake
MESIENSYGRLLLESQLPDSAKQLAQPLKSVVILRGKMICQRCHYQLDEE
ARLPSGAYYCRFCLVFGRNQSDKLLYAIPPMHFPKGNYLVWGGQLTAYQE
MISQQLLINMQNQKTTLVHAVTGAGKTEMIYAAIEAVINTGGWVCIASPR
VDVCVEVATRLSQAFSCSICLMHAESLPYQRAPIIVATTHQLLKFHKAFD
LLIIDEVDAFPFVNNIQLHYAASQALKEGGAKILLTATSTRTLERKVNKG
EVVKLTLARRFHNRPLVIPKFIRSFNLFKMIHRQKLPLKILKYLKKQRKT
GYPLLIFLPTIIMAESVTAILKELLPAEQIACVSSQSQNRKEDITAFRQG
KKTILITTSILERGVTFPQIDVFVLGSHHRVYSSQSLVQIAGRVGRSIDR
PDGTLYFFHEGISKAMLLARKEIKEMNYKGYSHDLSTMSTN
>SPy1415 deaD, putative ATP-dependent RNA helicase
MKFTEFNLSQDIQSAVVTAGFEKASPIQEMTIPLALEGKDVIGQAQTGTG
KTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGREKGVKV
RSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALILDHVETLILD
EADEMLNMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPE
HVQIKNKELTNVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKR
RVDEITRGLKLRGFRAEGIHGDLDQNKRLRVIRDFKNDQIDILVATDVAA
RGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKSGESITFVSPNEMGY
LSMIENLTKKQMKPLRPATAEEAFQAKKKVALKKIERDFADETIRSNFDK
FKGDAVQLAAEFTPEELALYILSLTVQDPDSLPEVEIAREKPLPFKYVGG
GHGNKNGKGGRGRDNRNRGDRRGGYRGDRNRDERDGDRRRQKRDKRDGHD
GSGNRDFKRKSKRNSKDFFNKEKKSSAKNTGFVIRHKGE
>SPy1369 deaD2, putative RNA helicase
MITKFPPQWQEKLDQVAFTHLTPIQEQAFQPIVDGKNFLGISPTGTGKTL
AYVFPNLLALTPKKSQQLLILAPNTELAGQIFEVTKDWAQPLGLTAQLFI
SGTSQKRQIERLKKGPEILIGTPGRIFELIKLKKIKMMSVNTIVLDEYDE
LLGDSQYDFVQKISHYVPRDHQMVYMSATNKVDQTSLAPNTFCIDLSEQT
NDAIQHFYLMVDKRERTDLLRKFTNIPHFRALVFFNSLSDLGATEERLQY
NGAAAVSLASDINVKFRKTILEKFKSHQLSLLLATDLVARGIDIDNLDYV
IHFDVARDKENYTHRAGRTGRMGKSGIVITFVSHPEDLKKLKKFAKVSEI
SLKNQQLHFIN
>SPy0649 dinG, putative ATP-dependent DNA helicase
MFCFIDIACYNRLTMTQKKLRKYAVVDLEATGAGPNASIIQVGIVIIQGN
KIIDSYETDVNPHESLDEHIVHLTGITDKQLAKAPDFGQVAHHIYQLIED
CIFVAHNVKFDANLLAEALFLEGYELTIPRVDTVELAQLFFPRFEKYNLS
HLSRQLNIDLAEAHTAIADARATAILFLRLLQKIESLPIECLESLLVYSD
SLLFETAMVIQEGLAKAKPYDPNKYIKIRQILLPKGSKALKPYQISKSFP
INMALLGLEERPKQTQFAQLIDEDYHQGVASFIEAQTGIGKTYGYLLPLL
AKEDQNQIIVSVPTKLLQDQLMAGEVAAIQEQFHIACHSLKGPANYLKLD
SFADSLDQNDQNRLVNRYKMQLLVWLLETKTGDLDEIKQKQRFAAYFEQL
KHDGDIKQSSEFYDYDFWRVSYEKAKTARLLITNHAYFLHRVQDDKDFAR
NKVLVFDEAQKLMLQLDQLSRHQLNLTVFLQTIQAKLSNPLPLLEKRLLE
SLSFELGQVSSDYYQNKEHQLAHDWSRIAGYAKELTGADYQELQAFFATS
DGDYWLSSEKQEEKRVTYLNSASKAFIHFQQLLPETVKTYFVSATLTISS
EVTLADLLGFEEYLYHVIEKDKKQDQLVLVDQEAPIVTEVSDQIYVEAIA
KRIESLKQEGYPILVLFNSKKHLLLVSDYLDQWQVPHLAQEKNGTAYNIK
KRFDQGEQTILLGLGSFWEGVDFIQADRMITLIARLPFDNPEDFFVKKMS
HYLLEKGKNPFRDYFLPMTILRLKQAIGRTMRRQDQKSVVIILDRRLLTK
SYGQVILEGLGQEFLISQQNFHDCLVETDCFLI
>SPy1846 dinP, putative DNA-damage-inducible protein P
MLIFPLINDTSRKIIHIDMDAFFAAVEERDNPALKGKPVVIGKDPRETGG
RGVVSTCNYEARKYGIHSAMSSKEAYERCPKAIFISGNYEKYRTVGDQIR
RIFKRYTDVVEPMSIDEAYLDVTDNKLGIKSAVKIAKLIQHDIWKEVGLT
CSAGVSYNKFLAKLASDFEKPHGLTLVLKEDALCFLAKLPIEKFHGVGKK
SVKKLHDMGIYTGQDLLAVPEMTLIDHFGRFGFDLYRKARGISNSPVKYD
RIRKSIGSERTYAKLLYQETDIKAEISKNVKRVAALLQDHKKLGKTIVLK
VRYADFTTLTKRVTLPELTRNAAQIEQVAGDIFDSLSENPAGIRLLGVTM
TNLEDKVADISLDL
>SPy0002 dnaA, Chromosomal initiator protein
MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATIYLDQMK
ELFWEKNLKDVILTAGFEVYNAQISVDYVFEEDLMIEQNQTKINQKPKQQ
ALNSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTYNPLFI
WGGPGLGKTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMD
ELKEKFRNLDLLLIDDIQSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTS
DRTPDHLNDLEDRLVTRFKWGLTVNITPPDFETRVAILTNKIQEYNFIFP
QDTIEYLAGQFDSNVRDLEGALKDISLVANFKQIDTITVDIAAEAIRARK
QDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVAMFLAR
EMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI
K
>SPy1284 dnaE, putative DNA polymerase III (alpha subunit)
MFAQLDTKTVYSFMDSLIDLNHYFERAKQFGYHTIGIMDKDNLYGAYHFI
KGCQKNGLQPVLGLEIEILYQERQVLLNLIAQNTQGYHQLLKISTAKMSG
KLHMDYFCQHLEGIAVIIPSKGWSDTLVVPFDYYIGVDQYTDLSHMDSKR
QLIPLRTVRYFAQDDMETLHMLHAIRDNLSLAETPVVESDQELADCQQLT
AFYQTHCPQALQNLEDLVSGIYYDFDTNLKLPHFNRDKSAKQELQDLTEA
GLKEKGLWKEPYQSRLLHELVIISDMGFDDYFLIVWDLLRFGRSKGYYMG
MGRGSAAGSLVAYALNITGIDPVQHDLLFERFLNKERYSMPDIDIDLPDI
YRSEFLRYVRNRYGSDHSAQIVTFSTFGPKQAIRDVFKRFGVPEYELTNL
TKKIGFKDSLATVYEKSISFRQVINSRTEFQKAFAIAKRIEGNPRQTSIH
AAGIVMSDDALTNHIPLKSGDDMMITQYDAHAVEANGLLKMDFLGLRNLT
FVQKMQEKVAKDYGCQIDITAIDLEDPQTLALFAKGDTKGIFQFEQNGAI
NLLKRIKPQRFEEIVATTSLNRPGASDYTTNFIKRREGQEKIDLIDPVIA
PILEPTYGIMLYQEQVMQIAQVYAGFTLGKADLLRRAMSKKNLQEMQKME
EDFIASAKHLGRAEETARGLFKRMEKFAGYGFNRSHAFAYSALAFQLAYF
KAHYPAVFYDIMMNYSSSDYITDALESDFQVAQVTINSIPYTDKIEASKI
YMGLKNIKGLPRDFAYWIIEQRPFNSVEDFLTRTPEKYQKKVFLEPLIKI
GLFDCFEPNRKKILDNLDGLLVFVNELGSLFSDSSFSWVDTKDYSVTEKY
SLEQEIVGVGMSKHPLIDIAEKSTQTFTPISQLVKESEAVVLIQIDSIRI
IRTKTSGQQMAFLSVNDTKKKLDVTLFPQEYAIYKDQLKEGEFYYLKGRI
KERDHRLQMVCQQVQMAISQKYWLLVENHQFDSQISEILGAFPGTTPVVI
HYQKNKETIALTKIQVHVTENLKEKLRPFVLKTVFR
>SPy0781 dnaG, putative DNA primase
MGFLWGGDDLAIDKEMISQVKNSVNIVDVIGEVVKLSRSGRHYLGLCPFH
KEKTPSFNVVEDRQFFHCFGCGKSGDVFKFIEEYRQVPFLESVQIIADKT
GMSLNIPPSQAVLASQHKHPNHALMTLHEDAAKFYHAVLMTTTIGQEARK
YLYQRGLDDQLIEHFNIGLAPDESDYLYQALSKKYEEGQLVASGLFHLSD
QSNTIYDAFRNRIMFPLSDDRGHIIAFSGRIWTAADMEKRQAKYKNSRGT
VLFNKSYELYHLDKARPVIAKTHEVFLMEGFMDVIAAYRSGYENAVASMG
TALTQEHVNHLKQVTKKVVLIYDGDDAGQHAIAKSLELLKDFVVEIVRIP
NKMDPDEFVQRHSPEAFADLLKQSRISSVEFFIDYLKPTNVDNLQSQIVY
VEKMAPLIAQSPSITAQHSYINKIADLLPNFDYFQVEQSVNALRIQDRQK
HQGQIAQAVSNLVTLPMPKSLTAIAKTESHLMHRLLHHDYLLNEFRHRDD
FYFDTSTLELLYQRLKQQGHITSYDLSEMSEEVNRAYYNVLEENLPKEVA
LGEIDDILSKRAKLLAERDLHKQGKKVRESSNKGDHQAALEVLEHFIAQK
RKME
>SPy0340 dnaI, putative primosome component (helicase loader)
MEKIGETMAKLGQNTRVNSDQLIQTILADPEVASFISQHHLSQEQINLSL
SKFNQFLVERQKYQLKDPSYIAKGYQPILAMNEGYADVSYLETKELVEAQ
KQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSA
EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAI
SNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELP
TFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFHLEGANRR
>SPy0003 dnaN, beta subunit of DNA polymerase III
MIQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNG
QISIENTIPVSNENAGLLITSPGAILLEASFFINIISSLPDISINVKEIE
QHQVVLTSGKSEITLKGKDVDQYPRLQEVSTENPLILKTKLLKSIIAETA
FAASLQESRPILTGVHIVLSNHKDFKAVATDSHRMSQRLITLDNTSADFD
VVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEHISFYTRLLEGNYP
DTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQNHIS
AHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETVKIHF
LSPVRPFTLTPGDEEESFIQLITPVRTN
>SPy1864 dnaQ, putative DNA polymerase III epsilon subunit
MTKALSGSFLEENMKHLDTYIAFDLEFNTVNDVSHIIQVSAVKYDHHKEV
DSFDTYVYTDVPLQSFINGLTGITSDKIAAEPKVEEVMAAFKNFVGELPL
IGYNAQKSDLPILAENGLDLRDQYQIDLFDEAYDRRSADLNGIANLRLQT
VATFLGIKGRGHNSLEDARMTAVIYKSFLETDTNKAYLSQQEEVTTDNPF
AALGDFFD
>SPy1364 dnaX, DNA polymerase III subunits gamma / tau
MYQALYRKYRSQTFDEMVGQSVISTTLKQAVESGKISHAYLFSGPRGTGK
TSAAKIFAKAMNCPNQVDGEPCNQCDICRDITNGSLEDVIEIDAASNNGV
DEIRDIRDKSTYAPSRATYKVYIIDEVHMLSTGAFNALLKTLEEPTENVV
FILATTELHKIPATILSRVQRFEFKAIKQKAIREHLAWVLDKEGIAYEVD
ALNLIARRAEGGMRDALSILDQALSLSPDNQVAIAIAEEITGSISILALG
DYVRYVSQEQATQALAALETIYDSGKSMSRFATDLLTYLRDLLVVKAGGD
NQRQSAVFDTNLSLSIDRIFQMITVVTSHLPEIKKGTHPRIYAEMMTIQL
AQKEQILSQVNLSGELISEIETLKNELAQLKQQLSQLQSRPDSLARSDKT
KPKTTSYRVDRVTILKIMEETVRNSQQSRQYLDALKNAWNEILDNISAQD
RALLMGSEPVLANSENAILAFEAAFNAEQVMSRNNLNDMFGNIMSKAAGF
SPNILAVPRTDFQHIRKEFAQQMKSQKDSVQEEQEVALDIPEGFDFLLDK
INTIDD
>SPy0412 exoA, putative 3'-exo-deoxyribonuclease
MKLISWNIDSLNAALTGESPRALLSRAVLDTLVAQDADIIAIQETKLSAK
GPTKKHIETLLSYFPNYLHVWRSSVEPARKGYAGTMFLYKNTLNPVITFP
EIGAPTTMDAEGRIITLEFEDFFVTQVYTPNAGDGLRRLDDRQIWDHKYA
DYLTELDAQKPVLATGDYNVAHKEIDLANPNSNRRSPGFTDEERQGFTNL
LARGFTDTFRHVHGDIPHVYTWWAQRSKTSKINNTGWRIDYWLASNRLVD
KVKRSEMISSGERQDHTPILLDIDL
>SPy0497 fpg, putative formamidopyrimidine-DNA glycosylase
MPELPEVETVRRGLETLVLGQEIVAVTLKVPKMVKTDLETFALTLPGQII
QSVGRRGKYLLIDLGQLVLVSHLRMEGKYLLFPDEVPDNKHFHVFFELKN
GSTLVYQDVRKFGTFDLIAKSQLSAFFAKRKLGPEPKKETFKLKTFEAAL
LSSQKPIKPHLLDQTLVAGLGNIYVDEVLWAAKVHPETASSRLNKAEIKR
LHDETIRILALGIEKGGSTVRTYRNALGADGTMQDYLQVYGQTGKPCPRC
GQAIVKLKVGGRGTHICPKCQKKRL
>SPy1152 gyrA, DNA gyrase A subunit
MQDRNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGM
NELGVTPDKPHKKSARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHML
VDGHGNFGSMDGDGAAAQRYTEARMSKIALELLRDINKNTVNFQDNYDGS
EREPVVLPARFPNLLVNGATGIAVGMATNIPPHNLAESIDAVKMVMEHPD
CTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLRSRTEIETTQ
TGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRF
VIEIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDN
YISHQKEVIIRRTRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETD
VIAQTELMSRFDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLALIAD
LSDILAKPERIITIIKEEMDEIKRKYANPRRTELMVGEVLSLEDEDLIEE
EDVLITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNNDDFVRELISTST
HDTLLFFTNFGRVYRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTIIN
ARKEETAGKSFFFTTKQGIVKRTEVSEFNNIRQNGLRALKLKEGDQLINV
LLTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATGVRGVKLREDDRVVGA
SRIQDNQEVLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAG
LVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVT
FTLVQPEDSSIAEINTDRENSISKNKDN
>SPy0727 gyrB, putative DNA gyrase, subunit B
MIEENKHFEKKMQEYDASQIQVLEGLEAVRMRPGMYIGSTAKEGLHHLVW
EIVDNSIDEALAGFASHIKVFIEADNSITVVDDGRGIPVDIQAKTGRPAV
ETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVRVYKNGQIH
YQEFKRGAVVADLEVIGTTDVTGTTVHFTPDPEIFTETTQFDYSVLAKRI
QELAFLNRGLKISITDKRSGMEQEEHFLYEGGIGSYVEFLNDKKDVIFET
PIYTDGELEGIAVEVAMQYTTSYQETVMSFANNIHTHEGGTHEQGFRAAL
TRVINDYAKKNKILKENEDNLTGEDVREGLTAVISVKHPNPQFEGQTKTK
LGNSEVVKITNRLFSEAFQRFLLENPQVARKIVEKGILASKARIAAKRAR
EVTRKKSGLEISNLPGKLADCSSNDANQNELFIVEGDSAGGSAKSGRNRE
FQAILPIRGKILNVEKATMDKILANEEIRSLFTAMGTGFGADFDVSKARY
QKLVIMTDADVDGAHIRTLLLTLIYRFMRPVLEAGYVYIAQPPIYGVKVG
SEIKEYIQPGIDQEDQLKTALEKYSIGRSKPTVQRYKGLGEMDDHQLWET
TMDPENRLMARVTVDDAAEADKVFDMLMGDRVEPRRDFIEENAVYSTLDI
>SPy1489 hlpA, histone-like DNA-binding protein
MANKQDLIAKVAEATELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGN
FEVRERAARKGRNPQTGAEIEIAASKVPAFKAGKALKDAVK
>SPy1407 holA, DNA polymerase III delta subunit
MIAIEKIEKLSKENLGLITLVTGDDIGQYSQLKSRLMEQIAFDKDDLAYS
YFDMSEAAYQDAEMDLVSLPFFAEQKVVIFDHLLDITTNKKSFLKEKDLK
AFEAYLENPLETTRLIIFAPGKLDSKRRLVKLLKRDALVLEANPLKEAEL
RTYFQKYSHQLGLGFESGAFDQLLLKSNDDFSQIMKNMAFLKAYKKTGNI
SLTDIEQAIPKSLQDNIFDLTRLVLGGKIDAARDLIHDLRLSGEDDIKLI
AIMLGQFRLFLQLTILARDVKNEQQLVISLSDILGRRVNPYQVKYALKDS
RTLSLAFLTGAVKTLIETDYQIKTGLYEKSYLVDIALLKIMTHSQK
>SPy2182 holB, DNA polymerase III delta prime subunit
MRLPEVAELRVQPQDLLAEQSVLGSIFISPDKLIAVREFISPDDFYKYAH
KIIFRAMITLSDRNDAIDATTIRTILDDQDDLQSIGGLSYIVELVNSVPT
SANAEYYAKIVAEKAMLRDIIARLTESVNLAYDEILKPEEVIAGVERALI
ELNEHSNRSGFRKISDVLKVNYEALEARSKQTSNVTGLPTGFRDLDKITT
GLHPDQLVILAARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEMGAESLV
DRMLAAEGMVDSHSLRTGQLTDQDWNNVTIAQGALAEAPIYIDDTPGIKI
TEIRARSRKLSQEVDGGLGLIVIDYLQLITGTKPENRQQEVSDISRQLKI
LAKELKVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVAFLYR
DDYYRKECDDAEEAVEDNTIEVILEKNRAGARGTVKLMFQKEYNKFSSIA
QFEER
>SPy0655 int1, putative integrase; bacteriophage 370.1
MRKVAIYSRVSTINQAEEGYSIQGQIEALTKYCEAMEWKIYKNYSDAGFS
GGKLERPAITELIEDGKNNKFDTILVYKLDRLSRNVKDTLYLVKDVFTAN
NIHFVSLKENIDTSSAMGNLFLTLLSAIAEFEREQIKERMQFGVMNRAKS
GKTTAWKTPPYGYRYNKDEKTLSVNELEAANVRQMFDMIISGCSIMSITN
YARDNFVGNTWTHVKVKRILENETYKGLVKYREQTFSGDHQAIIDEKTYN
KAQIALAHRTDTKTNTRPFQGKYMLSHIAKCGYCGAPLKVCTGRAKNDGT
RRQTYVCVNKTESLARRSVNNYNNQKICNTGRYEKKHIEKYVIDVLYKLQ
HDKEYLKKIKKDDNIIDITPLKKEIEIIDKKINRLNDLYINDLIDLPKLK
KDIEELNHLKDDYNKAIKLNYLDKKNEDSLGMLMDNLDIRKSSYDVQSRI
VKQLIDRVEVTMDNIDIIFKF
>SPy1488 int2, putative integrase-phage associated
MWIEETDNGKFKFRENYKDPYTGTWKPVSVTMEKDNSRAYKAARKILEQK
ITEKIAQLKASELLFTELLDEWWAFYKKELKRSSVASLRGNIEEIRETFG
IGVKVVNIDPKYVQNYLDNLDCSRNKKERNKSMLNLAFDYAVGLDIIQDN
PARRAKLPRVKKTLEDWKKAEEKYLEEDEIKPLLKELYRRPSTYRLGLLA
EFISLNGCRIGEAVSIEPCNYESKSRILQLHGTFDHTEGYRNGEKTAPKT
LASYRETIMTSRELEILQELEFMNELEKNTNHRYRDMGYLFTTKNGVPIQ
TNSFNLALKKANERLEDPITKKLTSHIFRHTLISRLAENNVPLKSIMERV
GHADAKTTAQIYTHVTKKMKSSVADIMENY
>SPy0937 int3, putative integrase-phage associated
MWSEKHKSGKVNFVERYKHPYTGKWCRASVLMEKDTPRIRKEAQKYLDEK
ISEILTSLTTTDAYLLDVMNEWWEHHQKSLKSTSVRSLDFRIRELRNLID
PEVMIAKITTKYLQSIIDKIPGSYDKRKRARQLLKQTFDYAIALEYVSIN
PVISTQLAKPVKTIKDFEDVAQKFLEKDELKRLLDEMYRRKGSIKMAYLA
EFMSLNGCRIGEALAIQPDNIKNDIIEIHGTLDYTSNGYRNAIKTTPKTN
SSWRETLITKREKEIIQDILKINALEKNTNPNYKDMGYIFISRNGVPIQD
NALNTSIRAANKRLEKPIQKELTSHIFRHTLVSRLAENKVPLKTIMDRVG
HADSKTTQQIYTHVTKSMKNEVVDILNRL
>SPy2122 int4, putative integrase-phage associated
MKITEHKKKNGTIVYRASIYLGIDQMTGKRVKTSITGRTRKEVNQKAKHA
QFDFLSNGSTIKRKVVIKTFKELSHLWLETYKLTVKPQTYDATVTRLNRH
IMPTLGNMKVDKITASDIQMLINRLSKYYVNYTAVRSVIRKVLQQGVLLG
LIDYNSARDIILPRKQPNAKKKVKFIDPSDLKSFLEHLETSQHKRYNLYF
DAVLYQLLLSTGLRIGEACALEWGDIDLENGTIAINKTYNKNLKFLSTAK
TQSGNRVISVDKKTLRSLKLYQMRQRQLFNEVGARVSEVVFATPTRKYFN
ASVRQSALDTRCKEAGIERFTFHAFRHTHASLLLNAGISYKELQYRLGHA
NISMTLDTYGHLSKGKEKEAVLYYEKAMNNL
>SPy0751 lig, putative DNA ligase
MKKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYV
LQDSPTQQVGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKAEFP
NATYLAELKIDGLSISLSYENGFLQVGATRGDGNIGENITENIKKIKDIP
YQLSEPLTITVRGEAYMSRQSFKAINEARQENGETEFANPRNAAAGTLRQ
LDTSVVAKRQLATFLYQEASPTARNQQNEVLAELADLGFSVNPYYQLTSS
MDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVD
YIAEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLIPKLCPSCGS
ELVHFEDEVALRCINPLCPSLIQRSLEHFASRDAMNITGLGPAIVEKLFL
AGFVHDVADIYQLTKEDFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFG
LGIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYF
EQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNE
AKDKLEALGAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLR
QL
>SPy2121 mutL, putative DNA mismatch repair protein
MTNIIELPEVLANQIAAGEVVERPASVVKELVENAIDAKSSQITVEIEES
GLKMIQVTDNGEGMSHEDLPLSLRRHATSKIKSQSDLFRIRTLGFRGEAL
PSVASISKITIKTATKEVTHGSLLIATGGEIETLEAISTPTGTKIKVENL
FYNTPARLKYMKSLQAELAHIVDVVNRLSLAHPEVAFTLISDGRQLTQTS
GTGDLRQAIAGIYGLNTTKKMLAISNADLDFEVSGYVSLPELTRANRNYM
TILVNGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADVNVH
PTKQEVRISKERELMALISTAISESLKEQDLIPDALENLAKSSTRHFSKP
EQTQLPLQSRGLYYDPQKNDFFVKESAVSEKIPETDFYSGAVDNSVKVEK
VELLPHSEEVIGPSSVKHASRPQNTFTETDHPNLDLKNRQKLSQMLTRLE
NEGQSVFPELDYFGQMHGTYLFAQGKDGLFIIDQHAAQERVKYEYYRDKI
GEVDSSLQQLLVPYLFEFSGSDFINLQEKMALLNEVGIFLEVYGHNTFIL
REHPIWMKEEEIASGVYEMCDMLLLTNEVSIKTYRAELAIMMSCKRSIKA
NHSLDDYSARNLLLQLAQCQNPYNCPHGRPVLINFSKADMEKMFRRIQEN
HTSLRELGKY
>SPy2148 mutS, putative DNA mismatch repair protein
MAKTNISPGMQQYLDIKKDYPDAFLLFRMGDFYELFYEDAVKAAQLLEIG
LTSRNKNAENPIPMAGVPHHSAQQYIDVLIELGYKVAVAEQMEDPKQAVG
VVKREVVQVITPGTVVDSAKPDSANNFLVAVDFDGCRYGLAYMDVSTGEF
CVTDLADFTSVRSEIQNLKAKEVLLGFDLSEEEQTILVKQMNLLLSYEET
VYEDKSLIDGQLTTVELTAAGKLLQYVHKTQMRELSHLQALVHYEIKDYL
QMSYATKSSLDLVENARTNKKHGSLYWLLDETKTAMGMRLLRSWIDRPLV
SKEAILERQEIIQVFLNAFIERTDLSNSLKGVYDIERLSSRVSFGKANPK
DLLQLGHTLAQVPYIKAILESFDSPCVDKLVNDIDSLPELEYLIRTAIDP
DAPATISEGSIIRNGFDERLDHYRKVMREGTGWIADIEAKERQASGINNL
KIDYNKKDGYYFHVTNSNLSLVPEHFFRKATLKNSERYGTAELAKIEGQM
LEAREESSSLEYDIFMCIRAQVETYINRLQKLAKILATVDVLQSLAVVAE
TNHYIRPQFNDNHVITIQEGRHAVVEKVMGVQEYIPNSISFDQQTSIQLI
TGPNMSGKSTYMRQLALTVIMAQMGSFVAADHVDLPLFDAIFTRIGAADD
LISGQSTFMVEMMEANQAIKRASDNSLILFDELGRGTATYDGMALAQAII
EYIHDRVGAKTIFATHYHELTDLSTNLTSLVNVHVATLEKDGDVTFLHKI
AEGPADKSYGIHVAKIAGLPKSLLKRADEVLTRLETQSRSTEIISVPSQV
ESSSAVRQGQLSLFGDEEKAHEIRQALEVIDVMNMTPLQAMTTLYELKKL
L
>SPy1837 mutS2, putative DNA mismatch repair protein
MNNKILEQLEFNKVKELLLPYLKTEQSQEELLELEPMTEAPKIEKSFNEI
SDMEQIFVEHHSFGIVSLSSISESLKRLELSTDLNIQELLAIKKVLQSSS
DMIHFYSDLDNVSFQSLDRLFENLEQFPNLQGSFQAINDGGFLEHFASPE
LERIRRQLTNSERRVRQILQDMLKEKAELLSENLIASRSGRSVLPVKNTY
RNRISGVVHDISSSGSTVYIEPRAVVTLNEEITQLRADERHEEGRILHAF
SDLLRPHVATIRNNAWILGHLDFVRAKYLFMSDNKATIPKISNDSTLALI
NVRHPLLSNPVANDLHFDHDLTAIVITGPNTGGKTIMLKTLGLAQLMGQS
GLPVLADKGSKIAVFNNIFADIGDEQSIEQSLSTFSSHMTHIVSILNEAD
HNSLVLFDELGAGTDPQEGASLAMAILEHLRLSHIKTMATTHYPELKAYG
IETNFVENASMEFDAETLSPTYRFMQGVPGRSNAFEIASRLGLAPFIVKQ
AKQMTDSDSDVNRIIEQLEAQTLETRRRLDHIKEVEQENLKFNRAVKKLY
NEFSHERDKELEKIYQEAQEIVDMALNESDTILKKLNDKSQLKPHEIIDA
KAQIKKLAPQVDLSKNKVLNKAKKIKAARAPRIGDDIIVTSYGQRGTLTS
QLKDGRWEAQVGIIKMTLTQDEFSLVRVQEEQKVKNKQINVVKKADGSGP
RARLDLRGKRYEEAMQELDHFIDQALLNNMGQVDIIHGIGTGVIREGVTK
YLRRNKHVKHFAYAPQNAGGSGATIVTLG
>SPy1510 mutT, putative mutator protein
MMIPTFGHKNAHKDYVTRYGVYAIIPNHEQTKIILVQAPNGSWFLPGGEI
EAGEGQLQALERELIEELGFSATIGSYYGQADEYFYSRHRDTHFYHPAYL
YEVTAFQAVSKPLEDFNNLGWFSPIEAIAKLKRESHQWGVKEWQKKHHST
N
>SPy1010 mutX, putative 7,8-dihydro-8-oxoguanine-triphosphatase
MTQLATICYIDNGDSLLLLHRNKKENDVHKGKWISVGGKLEAGETPDECA
RREILEETHLTVTEMAFKGIITFPEFTPGHDWYTYVFKVTGFEGDLISDE
ESREGTLEWVPYDQVLEKPTWEGDYDIFKWILEDRSFFSAKFTYDQNNQL
MDKSVTFY
>SPy1833 mutY, putative A/G-specific adenine glycosylase
MWDNETIASFRRTLLEWYDQEKRDLPWRRTTNPYYIWVSEIMLQQTQVNT
VIPYYKRFLEWFPQIKDLADAPEEQLLKAWEGLGYYSRVRNMQKAAQQVM
VDFGGIFPHTYDDIASLKGIGPYTAGAIASISFNLPEPAVDGNVMRVMAR
LFEVNYDIGDPKNRKIFQAIMEILIDPDRPGDFNQALMDLGTDIESAKTP
RPDESPIRFFNAAYLNGTYGKYPIKNPKKKPKPMRIQAFVIRNQNGQYLL
EKNTKGRLLGGFWSFPIIETSPLSQQLDLFDDNQSNPIIWQTQNETFERE
YQLKPQWTDNHFPNIKHTFSHQKWTIELIEGVVKATDLPNAPHLKWVAIE
DFSLYPFATPQKKMLETYLKQKNA
>SPy0929 nth, putative endonuclease III (DNA repair)
MRIGKARLAKVLTIIGQMFPEAKGELDWETPFQLLIAVILSAQTTDKAVN
KVTPGLWQSYPEIEDLAFAELSDVENALRTIGLYKNKAKNIIKTAQAIRD
DFKGQVPKTHKELESLPGVGRKTANVVLAEVYGVPAIAVDTHVARVSKRL
NISSPDADVKQIEADLMAKIPKKDWIITHHRLIFFGRYHCLAKKPKCEIC
PVQSYCKYYQDTYGKSKA
>SPy0910 parC, putative DNA topoisomerase IV (subunit C)
MSNIQNMSLEDIMGERFGRYSKYIIQERALPDIRDGLKPVQRRILYSMNK
DGNTFEKGYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQDWKNREILVE
MHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKNTVSFAWNFDDTEK
EPTVLPAAFPNLLVNGSSGISAGYATDIPPHNLSEVIDAVVYMIDHPKAS
LEKLMEFLPGPDFPTGGIIQGADEIKKAYETGKGRVVVRSRTEIEELKGG
KQQIIVTEIPYEVNKAVLVKKIDDVRVNNKVPGIVEVRDESDRTGLRIAI
ELKKEADSQTILNYLLKYTDLQVNYNFNMVAIDHFTPRQVGLQKILSSYI
SHRKDIIIERSKFDKAKAEKRLHIVEGLIRVLSILDEIIALIRSSDNKAD
AKENLKVSYDFSEEQAEAIVTLQLYRLTNTDIVTLQNEENDLRDLITTLS
AIIGDEATMYNVMKRELREVKKKFANPRLSELQAESQIIEIDTASLIAEE
ETFVSVTRGGYLKRTSPRSFNASSLEEVGKRDDDELIFVKQAKTTEHLLL
FTTLGNVIYRPIHELTDLRWKDIGEHLSQTISNFATEEEILYADIVTSFD
QGLYVAVTQNGFIKRFDRKELSPWRTYKSKSTKYVKLKDDKDRVVTLSPV
IMEDLLLVTKNGYALRFSSQEVPIQGLKSAGVKGINLKNDDSLASAFAVT
SNSFFVLTQRGSLKRMAVDDIPQTSRANRGLLVLRELKTKPHRVFLAGGV
QSDTSAEQFDLFTDIPEEETNQQMLEVISKTGQTYEIALETLSLSERISN
GSFISDTISDQEVLVARTR
>SPy0909 parE, putative DNA topoisomerase IV (subunit B)
MLTKKEITINNYNDDAIQVLEGLDAVRKRPGMYIGSTDATGLHHLIWEIV
DNAVDEALSGFGDDIKVVINKDGSVSVADSGRGMPTGQHAMGIPTVQVIF
TILHAGGKFGQGGYKTSGGLHGVGSSVVNALSAWLEVEITRDGSVYRQRF
ENGGKPVTTLKKVGTAPKSKSGTVVTFMPDDKIFSTIDFKFNTISERLKE
SAFLLKNVKMSLTDLRGDDPIIEEFHYENGVQDFVEYLNEDKETLTPVIY
MEGQDQDFQVEVALQYNDGFSDNILSFVNNVRTKDGGSHETGLKSAITKA
MNDYARKTNLLKEKDKNLEGSDYREGLSAVLSILVPEQHLQFEGQTKDKL
GSPLARPIVESIVSEKLTFFLLENGEVASHLVRKAIKARDAREAARKARD
DSRNGKKNKKDKGLLSGKLTPAQSKNAKKNELYLVEGDSAGGSAKQGRDR
KFQAILPLRGKVLNTEKAKMADILKNEEINTMVYTIGAGVGADFNLEDIN
YDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSK
GKGKTEKIAYAWTDGELEDLRREFGKGAILQRYKGLGEMNANQLWETTMD
PETRTLIRVTIDDLARAERRVSVLMGDKAAPRRQWIEDNVKFTLEENTVF
>SPy1267 pcrA, putative ATP-dependent DNA helicase
MNPLLNGMNDRQAQAVQTTEGPLLIMAGAGSGKTRVLTHRIAYLIDEKFV
NPWNILAITFTNKAAREMKERALALNPATKDTLIATFHSMCVRILRREAD
HIGYNRNFTIVDPGEQRTLMKRILKQLNIDPKKWNERSILGTISNAKNDL
LDEKGYEAQAADMYSQIVARCYKAYQEELRRSEALDFDDLIMMTLRLFDA
NPDVLAYYQQRYQYIHVDEYQDTNHAQYQLIKLLASRFKNICVVGDADQS
IYGWRGADMQNILDFEKDYPDAKVVLLEENYRSTKKILQAANDVINNNRN
RRPKKLWTQNADGEQLVYYRANDERDEAVFVASTISNMSQELGKNFKDFA
VLYRTNAQSRTIEEALLKSNIPYTMVGGTKFYSRKEIRDLIAYLTIVANP
ADNISFERIVNEPKRGVGPGTLDKLRQFAYESDQSLLEAASNLLMSPLKG
KAAQAIMDLANILGQLRQDLDQMSITDLAEALLEKTGYLDSLRLQNTLES
QARIENIEEFLSVTKNFDESSASQEEDETGVDRLGRFLNDLALIADTDDS
QAEAAEVTLMTLHAAKGLEFPVVFLIGMEEGVFPLSRASEDPDELEEERR
LAYVGITRAEEVLFMTNANTRTLFGKSSYNRPTRFLKEISEELLSYKGLA
RPAQSSFGVRFSTETHTQFGQGMSLSEALQARKAQAQVRQSAQPMQAHTI
PSASTSSVLPFGSNSSVEEVTWQIGDIAHHKKWGDGTVLEVSGSGKTMEL
KIKFPEVGLKKLLASVAPIEKK
>SPy1505 phr, putative deoxyribodipyrimidine photolyase
MVSVMWFRRDLRIDDQKALAHAIASQSPTLCVFQFNKEQLNLLHSRNQSS
FITSVLAFRKLLKCEGIDLYLMYGDLMTCFEQLLTQLKDWTDVYFNYDES
GYGRLRDQKAAQFFKKNGIAVHTYQDHYLHGSQEIINQSGQPYKVFTPYY
RIWQNYPKETPIKVELSQGRWLNLETPDDVLRTVESFKDEKYQDVATFDE
ASKQLNRFIQDQLAAYHANRDFPAQLGTSRLSPFLRIGAIGIRTVYHAVR
QAPNSLGQATFLKELAWRDFYNMVYVAYPDQKTQPIQKAFSQIEWVNNPD
WFQLWKEGKTGYPIVDAAMLQLQKTGWMHNRLRMIVASFLTKDLLCDWRL
GEQYFQQQLIDYDAASNIGGWQWAASTGTDAVPYFRIFNPVTQGKRFDPK
GEFIKAYLPQLEHVPEKYLHEPWKMPKNLQESVSCIIGTDYPQPIVDHAK
QREQAIAKYEWAKEKAKIE
>SPy0185 polA, DNA-directed DNA polymerase I
MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDH
MMKRVQPTHVLVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREM
LTALGIAYYELEHYEADDIIGTLDKMAERTEVPFDVTIVSGDKDLIQLTD
ENTVVEISKKGVAEFEEFTPAYLMEKMGLTPNQFIDLKALMGDKSDNIPG
VTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKMKENLINDRDQAFLSKT
LATINTASPITIGLDDIVYNGPDVASLSQFYDEMDFVQLKKGLASQMPQE
PVAVISYQEVTNVSADLFSAEDIFYFETLRDNYHREAIIGFAWGHGEQIY
ASTDLGLLATDSFKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLA
NYLLSTVEDNELSTIARIFTDISLEEDDTVYGKGAKRAVPDKDVLLEHLA
RKVKVLLDSKSQMLDKLTAHEQLDLYQNIELPLANVLAKMEIEGIKVNRA
TLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSILFEKMQLPLEM
TKKTKTGYSTAVNVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIL
ADGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDA
VLLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAAD
VTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTYFERYPGI
KAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPI
QGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKK
LVKDTMEAAVDLAVPLCVDESTGHSWYEAK
>SPy1961 polC, DNA polymerase III (alpha subunit)
MSDLFAKLMDQIEMPLDMRRSSAFSSADIIEVKVHSVSRLWEFHFAFAAV
LPIATYRELHDRLIRTFEAADIKVTFDIQAAQVDYSDDLLQAYYQEAFEH
APCNSASFKSSFSKLKVTYEDDKLIIAAPGFVNNDHFRNNHLPNLVKQLE
AFGFGILTIDMVSDQEMTEHLTKNFVSSRQALVKKAVQDNLEAQKSLEAM
MPPVEEATPAPKFDYKERAAKRQAGFEKATITPMIEIETEENRIVFEGMV
FDVERKTTRTGRHIINFKMTDYTSSFALQKWAKDDEELRKFDMIAKGAWL
RVQGNIETNPFTKSLTMNVQQVKEIVRHERKDLMPEGQKRVELHAHTNMS
TMDALPTVESLIDTAAKWGHKAIAITDHANVQSFPHGYHRARKAGIKAIF
GLEANIVEDKVPISYEPVDMDLHEATYVVFDVETTGLSAMNNDLIQIAAS
KMFKGNIVEQFDEFIDPGHPLSAFTTELTGITDKHLQGAKPLVTVLKAFQ
DFCKDSILVAHNASFDVGFMNANYERHDLPKITQPVIDTLEFARNLYPEY
KRHGLGPLTKRFQVSLDHHHMANYDAEATGRLLFIFLKDAREKHGIKNLL
QLNTDLVAEDSYKKARIKHATIYVQNQVGLKNMFKLVSLSNIKYFEGVPR
IPRTVLDAHREGLLLGTACSDGEVFDAVLTKGIDAAVDLARYYDFIEIMP
PAIYQPLVVRELIKDQAGIEQVIRDLIEVGKRAKKPVLATGNVHYLEPEE
EIYREIIVRSLGQGAMINRTIGRGEGAQPAPLPKAHFRTTNEMLDEFAFL
GKDLAYQVVVQNTQDFADRIEEVEVVKGDLYTPYIDKAEETVAELTYQKA
FEIYGNPLPDIIDLRIEKELTSILGNGFAVIYLASQMLVNRSNERGYLVG
SRGSVGSSFVATMIGITEVNPMPPHYVCPSCQHSEFITDGSVGSGYDLPN
KPCPKCGTPYQKDGQDIPFETFLGFDGDKVPDIDLNFSGDDQPSAHLDVR
DIFGDEYAFRAGTVGTVAEKTAYGFVKGYERDYGKFYRDAEVDRLAAGAA
GVKRTTGQHPGGIVVIPNYMDVYDFTPVQYPADDVTASWQTTHFNFHDID
ENVLKLDILGHDDPTMIRKLQDLSGIDPITIPADDPGVMALFSGTEVLGV
TPEQIGTPTGMLGIPEFGTNFVRGMVNETHPTTFAELLQLSGLSHGTDVW
LGNAQDLIKEGIATLKTVIGCRDDIMVYLMHAGLEPKMAFTIMERVRKGL
WLKISEEERNGYIDAMRENNVPDWYIESCGKIKYMFPKAHAAAYVLMALR
VAYFKVHHPIMYYCAYFSIRAKAFELKTMSGGLDAVKARMEDITIKRKNN
EATNVENDLFTTLEIVNEMLERGFKFGKLDLYKSDAIEFQIKGDTLIPPF
IALEGLGENVAKQIVKARQEGEFLSKMELRKRGGASSTLVEKMDEMGILG
NMPEDNQLSLFDDFF
>SPy1629 priA, putative primosomal replication factor Y
MEKVAHVIVDIPLMQTDKPFSYGIPKELVSLVQLGSRVHVPFGKGNRLLQ
GFIIGFGQEDSSSLKLIQTVLDPEPVLNQEQLTLADQLRKTVFSYKITLL
KAMIPNLLNSNYDKVLRPESGLKKSDRDFLFEGKPSVLYSTLDREKEKIA
LKGIQAGHITVSYLAKDKKNLKTEKYYHVDLDALAVHPISSRAKKRQLLK
DYLLTHTKEAKLATLYQAFSRDVVAYFVTNHLIRIDERPIDRSESYFDQI
KPSSFLTLNEQQASAVTEIVEQIGKPSKPFLIEGITGSGKTEVYLHIIEA
VLKQDKTAIVLVPEISLTPQMTSRFISRFGKQVAIMHSGLSDGEKFDEWR
KIKTGQAKVVVGARSAIFSPLERIGAIIIDEEHESTYKQESNPRYHAREV
ALLRAKHHQAVVVMGSATPSIESRARASKGVYHFIQLTQRANPLAKIPEV
TIVDFRDYIGQQAVSNFTPYLIDKIKERLVKKEQVVLMLNRRGYSSFVMC
RDCGYVDKCPNCDISLTLHMDTKTMNCHYCGFQKPIPITCPECHSNSIRY
YGTGTQKAFDELQGVIPEAKILRMDVDTTRKKRSHKTILDSFGRQEADIL
LGTQMIAKGLDFPNVTLVGVLNADTSLNLPDFRASEKTFQLLTQVAGRAG
RAHKPGEVLIQTYNPDHYAIQLAKKQDFEAFYRYEMSIRHQMAYPPYYFT
VGITLSHRLEASVVKKAYQVTELLKSHLSDNIKILGPTPKPIARTHNLYH
YQILLKYRFEDNLEETLNRILDWSQEADNRHLKLIIDCEPQQFL
>SPy1118 radC, putative DNA repair protein
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSY
LLSHLDSLADFKKMSLQELQHLAGIGKVKAIEIKAMIELVSRILATDKTL
TDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRR
SLAEPREILYYACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCED
LGIICLDHIIVSYKDYYSFREKSTLF
>SPy2116 recA, recombination protein
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKV
QVMSSGSLALDIALGAGGYPKGRIIEIYGPESSGKTTVALHAVAQAQKEG
GIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGA
VDLVVVDSVAALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKT
IAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRGTTQIKGTGDQ
KDSSIGKETKIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDI
IQKAGAWFSYNGEKIGQGSENAKRYLADHPELFDEIDLKVRVKFGLLEES
EEESAMAVASEETDDLALDLDNGIEIED
>SPy2204 recF, RecF protein
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTR
SHRTRADKELIHFDHSTVSLTGKIQRISGTVDLEINLSDKGRVTKINALK
QAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSEL
SHYNHVLKQRNSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINAL
EKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLHQLEKNHQKDF
FRKNTSVGPHRDELAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALT
GDNPILLLDDVMSELDNTRQTKLLETVIKENVQTFITTTSLDHLSQLPEG
IRIFHVTKGTVQIDSDIH
>SPy1785 recG, putative ATP-dependent DNA helicase
MILTAPMSNLKGFGPKSAEKFQKLDIYTVEDLLLYYPFRYEDFKSKSVFD
LVDGEKAVITGLVVTPANVQYYGFKRNRLSFKLRQGEAVLNVSFFNQPYL
ADKIELGQEVAVFGKWDATKSAITGMKVLAQVEDDMQPVYRVAQGISQST
LIKAIKSAFEIDAHLELKENLPATLLEKYRLMGRSQACLAMHFPKDITEY
KQALRRIKFEELFYFQMNLQVLKAENKSETNGLPILYSKRAMETKISSLP
FILTNAQKRSLDDILSDMSSGAHMNRLLQGDVGSGKTVIAGLSMYAAYTA
GFQSALMVPTEILAEQHYISLQELFPDLSIAILTSGMKAAVKRTVLAAIA
NGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSIIDELPAGRKPIMTRWVKHEQLGTVL
EWVKGELQKDAQVYVISPLIEESEALDLKNAVALHAELSTYFEGIAKVAL
VHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMIIMDADR
FGLSQLHQLRGRVGRGYKQSYAVLVANPKTDSGKKRMTIMTETTDGFVLA
ESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARKVSAAIVSDPN
WIYEKQWQLVAQNIRKKEVYD
>SPy1495 recN, putative DNA repair and genetic recombination protein
MLLEISIKNFAIIDEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARA
STEVIRRGANKAEIEGFFSVDATPELVACLESSGIAMEEELIIRRDIFAN
GRSVSRINGQMVNLATLKQVGQFLVDIHGQHDQEELMRPQLHQQILDAFG
DKAFEQLKENYQLIFDRYKSLRRQVIDKQKNEKEHKDRIDMLAFQIAEIE
AAALSRGEDDRLNQERDRLMNHKQIADTLTNAYVMLDNDDFSSLSNIRSS
MNDLLSIEQFDSEYKGMSTSISEAYYILEEVSKQLSDTIDQLDFDGGRLQ
EIEFRLDILNSLTRKYGGNVNDVLDYYDNIVKEYQLLTGDDLSSGDLEAE
LKSLEKQLVAAASELSVSRHQLAEQLEAEIKAELKELYMEKADFKVHFTT
SKFNRDGNESLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISRKE
DKTSIVFDEVDTGVSGRVAQAIAQKIYKIGRHGQVLAISHLPQVIAIADY
QYFISKESKEESTVSKVRLLTPEERVEEIASMIAGTDMTQAALTQARELL
AKH
>SPy1422 recR, putative recombination protein
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSNEDVNDFAKNLLAA
KRELTYCSICGNLTDDDPCHICTDTSRDQTTILVVEDAKDVSAMEKIQEY
HGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVSEVIVATNATADGE
ATSMYISRVLKPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL
>SPy0777 rexA, putative ATP-dependent exonuclease, subunit A
MISFAPFLSPEAIKHLQENERCRDQSQKRTAQQIEAIYTSGQNILVSASA
GSGKTFVMVERILDKILRGVSIDRLFISTFTVKAATELRERIENKLYSQI
AQTTDFQMKVYLTEQLQSLCQADIGTMDAFAQKVVSRYGYSIGISSQFRI
MQDKAEQDVLKQEVFSKLFNEFMNQKEAPVFRALVKNFSGNCKDTSAFRE
LVYTCYSFSQSTENPKIWLQENFLSAAKTYQRLEDIPDHDIELLLLAMQD
TANQLRDVTDMEDYGQLTKAGSRSAKYTKHLTIIEKLSDWVRDFKCLYGK
AGLDRLIRDVTGLIPSGNDVTVSKVKYPVFKTLHQKLKQFRHLETILMYQ
KDCFSLLEQLQDFVLAFSEAYLAVKIQESAFEFSDIAHFAIKILEENTDI
RQSYQQHYHEVMVDEYQDNNHMQERLLTLLSNGHNRFMVGDIKQSIYRFR
QADPQIFNQKFRDYQKKPEQGKVILLKENFRSQSEVLNVSNAVFSHLMDE
SVGDVLYDEQHQLIAGSHAQTVPYLDRRAQLLLYNSDKDDGNAPSDSEGI
SFSEVTIVAKEIIKLHNDKGVPFEDITLLVSSRTRNDIISHTFNQYGIPI
ATDGGQQNYLKSVEVMVMLDTLRTINNPRNDYALVALLRSPMFAFDEDDL
ARIALQKDNELDKDCLYDKIQRAVIGRGAHPELIHDTLLGKLNVFLKTLK
SWRRYAKLGSLYDLIWKIFNDRFYFDFVASQAKAEQAQANLYALALRANQ
FEKSGYKGLYRFIKMIDKVLETQNDLADVEVATPKQAVNLMTIHKSKGLQ
FPYVFILNCDKRFSMTDIHKSFILNRQHGIGIKYLADIKGLLGETTLNSV
KVSMETLPYQLNKQELRLATLSEEMRLLYVAMTRAEKKVYFIGKASKSKS
QEITDPKKLGKLLPLALREQLLTFQDWLLAIADIFSTEDLYFDVRFIEDS
DLTQESVGRLQTPQLLNPDDLKDNRQSETIARALDMLEAVSQLNANYEAA
IHLPTVRTPSQLKATYEPLLEPIGVDIIEKSSRSLSDFTLPHFSKKAKVE
ASHIGSALHQLMQVLPLSKPINQQTLLDALRGIDSNEEVKTALDLKKIES
FFCDTSLGQFFQTYQKHLYREAPFAILKLDPISQEEYVLRGIIDAYFLFD
DHIVLVDYKTDKYKQPIELKKRYQQQLELYAEALTQTYKLPVTKRYLVLM
GGGKPEIVEV
>SPy0776 rexB, putative ATP-dependent exonuclease, subunit B
MKLIYTEMSYSMTEILVNEARKAADQGYRVFYIAPNSLSFEKEREVLTLL
PERGTFSIIVTRFVQMSRYFTVESSPSKQHLDDTTLAMIFYRALMQLKPE
DLPSYGRLQNNSVFIEQLVELYKELKNAQLSVHDLTGLDHPQKQEDLIKI
IELAETIMIQQDYNQDSPLQSFARAIKLGLLNNQLSKTVVVIDGFSRFSA
EEDYLLSLLNNNCQEVIIGSYVSQKAYQKSFIKGNIYEASLHFLQDLAQK
YHIKPVFATSNQVFKPAFSRLTQLFEATHDFSQVDWQLQKSDLDHFSLWQ
CHHQKEEIEHVAKSIRQKLYEGYRYKDILVLLGDMDAYQLQIGPIFDKFE
IPYYLGKAEPMAAHPLVQFIESLERSQRYNWRREDILNMLKSGLFGCFDD
SDIDRFEEYTQFADIKGFTKFSKPFTINSSRQYPLDFLNEMRQDIVLPLQ
ELFKSQKQLGASLVDKLILFLKKIRLAENMQGLAQSQLEVEKNEEVWKRF
TDILTSFHHIFGQEKLRLSDCLALIKTGMKSAQYRVVPATLDVVTIKSYD
LVQPHSKPFVYAIGLTQSHFPKQIHHSGLLSDQERARINEIRNYRHFDIA
SAENSKKNHQTALSLFNAATKELVLSVSTVINETFDDLSPYLKELINFGL
PLLDKGKNYLSYDNSDIGNYKALLSQIIAINRQDLIEMSDQDKMFWTVVL
RYLRKQLRKQQLELPTSDYRLSTKPLSKEVIEVCFPKGIPLKLSATALTV
FYNNQYNYFLKYVLNLNKTESIHPDSRIHGQYLHRVFERLMKDHTQEPFD
NKLKQAIYHTNQESFFQQVYQDNAEAEYSLAILEDIVRSTAPILQLNQNI
QVIDQEKNFQLDMGNEILVHGIIDRIDQLSDGSLGIVDYKSSANQFDIGT
FYNGLSPQLMTYLAALKQIAPHDINQLFGAMYLHLQDPKLDLVTFKQIDN
TLVESIYKALTYKGIFSEVEKEHLSTGAYQTKNALYSNDELETLLNYNKY
LYLKAAKHIKKGHFLINPYTSDGKTVQGDQLKAITRFEADLDMGQARRLV
TLPAKEKKECFLTLMRKESHL
>SPy1162 rnh, putative ribonuclease HII
MPTSIKAIKESLEAVTSLLDPLFQELATDTRSGVQKALKSRQKVIQAELA
EEERLEAMLSYEKALYKKGYKAIAGIDEVGRGPLAGPVVAACVILPKYCK
IKGLNDSKKIPKAKHETIYQAVKEKALAIGIGIIDNQLIDEVNIYEATKL
AMLEAIKQLEGQLTQPDYLLIDAMTLDIAISQQSILKGDANSLSIAAASI
VAKVTRDQMMANYDRIFPGYDFAKNAGYGTKEHLQGLKAYGITPIHRKSF
EPVKSMCCDSTNP
>SPy2119 ruvA, putative Holiday junction DNA helicase
MYDYIKGQLTKITAKYIVVEANGLGYMINVANPYSFTDSVNQLVTIYLHQ
VIREDAHLLFGFHTEDEKDVFLKLISVSGIGPTTALAIVAVDDNEGLVNA
IDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGHTKARSNKAGN
TQLDEAIEALLALGYKAKELKKIRAFFEGTSETAEQYIKSALKLLMKG
>SPy0038 ruvB, putative Holliday junction DNA helicase, subunit B
MARILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDE
SLDHVLLFGPPGLGKTTMAFVIANELGVNLKQTSGPAVEKAGDLVAILNE
LEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAGDTSRSIHLDLP
PFTLIGATTRAGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEIK
IDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIITAQITDRALTM
LDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEMYEP
YLIQKGFLMRTRTGRVATQKAYRHLGYPYQNT
>SPy1163 smf, putative DNA processing protein (Smf family)
MNHFELYKLKKAGLTNKNILNILDYQKHQEKSLSLRDMAVVSGCKHPSHF
IEAYKQLDIQNLKMEFKQFPSISILDKHYPMALKEIYNPPVLLFFQGNLD
LLEKPKLAIVGSRRSSDTGVKSVRKILKELGNRFVIVSGLARGIDTSAHL
ACLKNGGQTIAIIGTGLDRFYPKENRELQTFLGKNHLVLTEYGPGEEALS
YHFPERNRIIAGLSRGILVVEAKNRSGSLITCQIGIEEGRDIFAVPGNIL
DGKSEGCLQLIKEGATCVTSGMDILSEY
>SPy0342 snf, putative SNF helicase
MMARLIPGRVRNEGIKLYEQGLVSFQDDNKGILQIEVETYQVQYGADDED
ITCQCDTFHMKHYCKHIAAVEYFLKNDQKGKLFLKQLTNQTKIKETTKKM
TSFGSLFLDSLAMNEDDSVKYRLSALGSRSPFSSDYWWSLKINRLPDDRS
YVIRDIKGFLQLIKKEGFYQIGKNYFEQLSWLQFDPSSQALIEFLWRLAS
DTDKGDNENIFPNHARHLRLPSGFFEEGIHYLTSLYDFTFEGPSQTYHHL
FVRSLEAEAGLYEFKVEVHRKSIELQIAEKNVQYLFDNDYLLYQDTFYHL
TLKQRKMVQAIRSLPIEADLAKHIHFDLDDHAKLAASLSDFKQIGLVEAP
KSFAIRDFEVTFQFDLLNRDEISCQLMFDYGNYQVSDKASLEALPFASHL
KKEEKINRSLLAFGFSPQFYSKKRLTSAKELYTFFEETVPCFERLGNVAL
STAIQALQVKEMPKIAIRRNQGLLDISFDFSTIIENDIDQAVTALFQNNP
YFVSQTGQLVVFDDETQKVSKSLQELRARQLKNGHLQLDGIRALQVSKLF
EGMTSVHFSKELEELAYHLQHPETFSIKPLPVKAQMRDYQRNGVQWLSML
NHYGFGGILADDMGLGKTLQTLAFLASHLKSDSKVLILSPSSLIYNWFDE
CQKFTPQLDVVVSYGLKQIRDQIIEEGHQITITSYSSFRQDFETYQAFHY
DYLILDEAQVIKNAQTKISHCLRAFNTANCFALSGTPIENKMLEIWSIFQ
IVLPGLLPTKKEFLKLTAEQVSRYIKPFVMRRKKEDVLPELPDLIEINYS
NEMTDEQKAIYLAQLRQMQDQIRNSSDVDISRQKIEILSGITRLRQICDT
PSLFMDYQGKSGKLDSLRILLTQIKENGHRALIFSQFRGMLDLAKQEMTA
LGLTSYQMTGSTPANERQEMTRAFNNGSKDAFLISLKAGGVGINLTGADT
VILIDLWWNPAVEMQAISRAYRIGQKENVEVYRLITRGTIEEKILELQES
KRNLVTTVLDGNESRASMSIEEIKEILGLNTH
>SPy1080 srtI, protein involved in lantibiotic (srt) production
MSFSVKQSGLIFIPNYQLDIRKEENHKKYKVYIRETAQFFIYNKEASELN
RYMRGHELICQLTNDSKSIPKRRRQTIDTLKKKIEEISLLIELDTENKPY
QDIKDDIVKDMAQLDLTITELQDHIAHLNKVAEVLLNLNNNDIENRRLAR
YDYAKMNLTAAIKIEEVEKEIETSQNELNISIDEYEYLVRRLEKFGEILS
DSKIIDTSRNEIQWE
>SPy2118 tag, putative 3-methyl-adenine DNA glycosylase I, constitutive
MKRCSWVPKDNQLYCDYHDLEWGQPLDDDRDFFELLCLESYQSGLSWLTV
LKKRQAFRTVFHHYDIASVATFTSEEMADALENPSIIRHKLKLAATVNNA
IAVQKIQKEFGSFSTYLWNFVGGKPINNLVNQENLVPAQTELSIRLAKDL
KKRGFKFLGPTTVYSFMQASGLVNDHEEACVFNRIF
>SPy0565 tnpA, transposase
MSTVKRYDEEFKQSLVNLYQTGKTRSELCKDYGVSASALAKWIKQYSQVK
LEDNSVLTAKQIQELQKRNAQLEEENLILKKSKCHIHAKLKVRLLAVYRL
RFEHVTTTLYRVLRVNRSTYYKFLKHKPSKRELDNQIYRKQILEIYTKAN
KRLGVKSIKVILQRDYDTKISEGRIYRLMKNMALPKMATVKPKTALKRTQ
KTYPQNLLNQKFNPDKPNQVWSTDFTYISIGYKKYVYLCAILDLYSRKCI
AWKLSHRMDAKLACDTLELALNKRKIEGTLLFHSDQGSQFKARELRKIID
DNTIMHSFSKPGYPYDNAVTEAFFKYLKHRQINQKKYQTGSIRLL
>SPy1164 topA, putative DNA topoisomerase I
MGTKTTTKPKTGTKKSTTKKKSTAKKNLVIVESPAKAKTIEKYLGRSYKV
VASVGHIRDLKKSSMSIDFDNNYEPQYINIRGKGPLINSLKKEAKAAKKV
YLASDPDREGEAISWHLSHILGLDPQDNNRVVFNEITKDAVKHAFVEPRQ
IDMDLVDSQQARRVLDRIVGYSISPILWKKVKKGLSAGRVQSVALKLIID
RENDIKAFVPKEYWSIDGLFKKGTKKFQATFYGINGKKTKLDNNNDVKEV
LAKLTNEDFLVSKVDKKERRRNAPLPYTTSSLQQDAANKINFRTRKTMMV
AQQLYEGIHLGENGTQGLITYMRTDSTRISPVAQNDAAQFIINRFGANYS
KHGNRVKNTSGVQDAHEAIRPSSVNHTPDSIAKYLNKDQLKLYTLIWNRF
VASQMTAAVFDTVKVNLEQNGVIFVANGSQMKFDGYMAVYNDSDKNKMLP
EMAEGETVKKISTSPEQHFTQPPARYSEATLIKTLEENGVGRPSTYAPTL
EVIQRRYYVKLSAKRFEPTELGEIVNKLIVEFFPDIVDVAFTAEMEGKLD
QVEIGEEQWQHVIDQFYQPFVKELNKAESEIEKIQIKDEPAGFDCDVCGH
PMVIKLGRFGKFYACSNFPECRNTKAITKEIGVTCPVCHKGQVIERKTKK
NRIFYGCDQYPDCEFISWDLPIGRACPKSGDYLIEKKVRGGKQVMCSNET
CDYKEEKIK
>SPy0008 trcF, putative transcription-repair coupling factor
MDILELFSQNKKVQSWHSGLTTLGRQLVMGLSGSSKTLAIASAYLDDQKK
IVVVTSTQNEVEKLASDLSSLLDEELVFQFFADDVAAAEFIFASMDKALS
RIETLQFLRNPKSQGVLIVSLSGLRILLPNPDVFTKSQIQLTVGEDYDSD
TLTKQLMTIGYQKVSQVISPGEFSRRGDILDIYEITQELPYRLEFFGDDI
DSIRQFHPETQKSFEQLEGIFINPASDLIFEVSDFQRGIEQLEKALQTAQ
DDKKSYLEDVLAVSKNGFKHKDIRKFQSLFYEKEWSLLDYIPKGTPIFFD
DFQKLVDKNARFDLEIANLLTEDLQQGKALSNLNYFTDNYRELRHYKPAT
FFSNFHKGLGNIKFDQMHQLTQYAMQEFFNQFPLLIDEIKRYQKNQTTVI
VQVESQYAYERLEKSFQDYQFRLPLVSANQIVSRESQIVIGAISSGFYFA
DEKLALITEHEIYHKKIKRRARRSNISNAERLKDYNELAVGDYVVHNVHG
IGRFLGIETIQIQGIHRDYVTIQYQNSDRISLPIDQISSLSKYVSADGKE
PKINKLNDGRFQKTKQKVARQVEDIADDLLKLYAERSQQKGFSFSPDDDL
QRAFDDDFAFVETEDQLRSIKEIKADMESMQPMDRLLVGDVGFGKTEVAM
RAAFKAVNDHKQVAVLVPTTVLAQQHYENFKARFENYPVEVDVLSRFRSK
KEQAETLERVRKGQIDIIIGTHRLLSKDVVFSDLGLIVIDEEQRFGVKHK
ETLKELKTKVDVLTLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTY
VLENNPGLVREAIIREMDRGGQIFYVYNKVDTIEKKVAELQELVPEASIG
FVHGQMSEIQLENTLIDFINGDYDVLVATTIIETGVDISNVNTLFIENAD
HMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKVLTEVSEKRLEAIKGFTEL
GSGFKIAMRDLSIRGAGNILGASQSGFIDSVGFEMYSQLLEQAIASKQGK
TTVRQKGNTEINLQIDAYLPDDYIADERQKIDIYKRIREIQSREDYLNLQ
DELMDRFGEYPDQVAYLLEIALLKHYMDNAFAELVERKNNQVIVRFEVTS
LTYFLTQDYFEALSKTHLKAKISEHQGKIDIVFDVRHQKDYRILEELMLF
GERLSEIKIRKNNSVFK
>SPy0905 ung, putative uracil DNA glycosylase
MAHSIWHEKIKSFLPEHYYGRINHFLDEAYASGLVYPPRENVFKALQVTP
LEETKVLILGQDPYHGPKQAQGLSFSVPEEISAPPSLINILKELADDIGP
RDHHDLSTWASQGVLLLNACLTVPAGQANGHAGLIWEPFTDAVIKVLNEK
DSPVVFILWGAYARKKKAFITNPKHHIIESPHPSPLSSYRGFFGSKPFSR
TNAILEKEGMTGVDWLK
>SPy1825 uvrA, putative excinuclease ABC (subunit A)
MQNKIIIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTIYAEG
QRRYVESLSAYARQFLGNMEKPDVDSIDGLSPAISIDQKTTSKNPRSTVG
TVTEINDYLRLLYARVGTPYCINGHGAITASSAEQIVEQVLALPERTRMQ
ILAPVVRRKKGQHKTVFEKIQKDGYVRVRVDGDIFDVTEVPELSKSKMHN
IEVVIDRLVNKDGIRSRLFDSVEAALRLGDGYLMIDTMDGNELLFSEHYS
CPVCGFTVPELEPRLFSFNAPFGSCPTCDGLGIKLEVDLDLVVPDPSKSL
REGALAPWNPISSNYYPTMLEQAMASFGVDMDTPFEALTEEERDLVLYGS
GDREFHFHYVNDFGGERNIDIPFEGVVTNVNRRYHETNSDYTRNVMRGYM
NELTCATCHGYRLNDQALCVHVGGEEGTHIGQISELSIADHLQLLEELEL
TENESTIAKPIVKEIHDRLTFLNNVGLNYLTLSRAAGTLSGGESQRIRLA
TQIGSNLSGVLYILDEPSIGLHQRDNDRLIESLKKMRDLGNTLIVVEHDE
DTMMQADWLIDVGPGAGEFGGEITASGTPKQVAKNKKSITGQYLSGKKFI
PVPLERRSGNGRFIEIKGAAQNNLQSLDVRFPLGKFIAVTGVSGSGKSTL
VNSILKKAVAQKLNRNADKPGKYHSISGIEHIERLIDIDQSPIGRTPRSN
PATYTGVFDDIRDLFAQTNEAKIRGYKKGRFSFNVKGGRCEACSGDGIIK
IEMHFLPDVYVPCEVCHGRRYNSETLEVHYKGKNIAEVLDMTVDDALVFF
SAIPKIARKIQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTG
KSLYILDEPTTGLHTDDIARLLKVLERFVDDGNTVLVIEHNLDVIKSADH
IIDLGPEGGDGGGQIVATGTPEEVAQVKESYTGHYLKVKLQQ
>SPy1314 uvrB, putative excinuclease ABC (subunit B)
MIDKRDDKPFKLKSKYKPSGDQPQAIESLVDNIEGGEKAQILLGATGTGK
TYTMSQVISKVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDY
YQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSSLLERNDVIVVASVSCI
YGLGSPKEYADSAVSLRPGQEISRDTLLNQLVDIQFERNDIDFQRGCFRV
RGDVVEVFPASRDEHAFRVEFFGDEIDRICEIESLTGKTIGEVDHLVLFP
ATHFVTNDEHMEQSIAKIQAELAEQLQLFESEGKLLEAQRLRQRTEYDIE
MLREMGYTSGVENYSRHMDGRSPGEPPYTLLDFFPEDFLIMIDESHMTMG
QIKGMYNGDQARKQMLVDYGFRLPSALDNRPLRREEFESHVHQIVYVSAT
PGEYEMSQTNTIIEQIIRPTGLLDPEIDVRSSMGQMDDLLGEINQRVARD
ERTFITTLTKKMAEDLTDYLKEMGVKVKYMHSDIKTLERTEIIRDLRLGV
FDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNV
DGHVIMYADKMTDSMQRAIDETARRREIQIAYNKAHGIVPQTIKKDIRGL
ISISKTSHNDISKEEMDYESMSRGERKEAINALQKQMQEAAELLDFELAA
QMRDLILELKLMD
>SPy1068 uvrC, excinuclease ABC (subunit C)
MNELIKHKLELLPDSPGCYLHKDKEGTIIYVGKAKNLKKRVRSYFRGSHD
TKTELLVSEIVDFEYIVTESDTEALLLEINLIQKNMPKYNIKLKDDKSYP
FLKITNESFPRLVITRYIKKNDGLYFGPYPDSYTANEVKKLLDRIFPFKK
CKNPINKVCFYYHLGQCCAHTICHTDKAYWDRLIDDVKHFLNGKDDKIIE
DLRSKMLAASKEMAFERAAEYRDLISGIATMRTKQRVMSKDLQDRDIFGY
YVDKGWMCVQVFFVRQGKLIQRDVNLFPYYTDAEEDFLTYMGQFYQDKQH
FIPKEVFIPEAIDEELVAAIVPTKIIKPKRGEKKQLVALATKNARVSLQQ
KFDLLEKDIKKTSGAIENLGQLLRIDKPVRIEAFDNSNIQGTSPVAAMVV
FVDGKPSKKDYRKFKIKTVVGPDDYASMREVLFRRYSRVKKEGLQAPNLI
IVDGGVGQVNVAKDVIEKQLGLTIPVAGLQKNDKHQTHDLLFGNPLEVVP
LPRRSEEFFLLHRIQDEVHRFAVTFHRQVRRKNSFSSTLDHISGLGPKRK
QLLLRHFKTITAIASATSEEIQALGIPKTVVEAIQQQITDNKNDRSSP
>SPy1500 xseA, putative exodeoxyribonuclease VII (large subunit)
MADYLTVTHLTKYLKLKFDRDPYLERVYLTGQVSNFRKRPTHQYFSLKDE
SAVIQATMWAGVYKKLGFDLEEGMKINVIGRVQLYEPSGSYSIVIEKAEP
DGIGALALQFEQLKKKLTAEGYFEQKHKQPLPQFVSKIGVITSPSGAVIR
DIITTVSRRFPGVEILLFPTKVQGDGAAQEVVANIRRANQREDLDLLIVG
RGGGSIEDLWAFNEEIVVQAIFESQLPVISSVGHETDTTLADFVADRRAA
TPTAAAELATPITKTDLMSWIVERQNRSYQACLRRIKQRQEWVDKLSQSV
IFRQPERLYDAYLQKIDRLSMTLMNTMKDRLSSAKENKVQLDHALANSQL
QTKIERYQDRVATAKRLLMANMASQYDSQLARFEKAQDALLSLDASRIIA
RGYAMIEKNQALVASVSQITKGDQLTIKMRDGQLDVEVKDVKNENI
>SPy1499 xseB, exodeoxyribonuclease VII (small subunit)
MSKTKTFEENLQDLETIVNKLENGDVPLEEAISEFQKGMLLSKELQKTLQ
AAEKTLVKVMQADGTEVDMDD