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# Tropheryma whipplei TW08/27, TW08/27

>TW410 conserved hypothetical protein
MPRVAKVLLNLSGRDILLDYFVPDGLHINRGHLVTVPFRGKICEGYVLNI
HTPESYVGHLRFIHDKPLEIPVLTRDISLLAHRIARRNCSQIGNLLHLAI
PKRRVRVEKAFSKNLSGIKDTDPPVQSQDFALFSQRVRLTSRCRYSLCVP
IGIDTQGIQPWAHEFAALATQCYRSGRTAILAVPDQKCQRQLIKALSKVP
ELRNDDIKILNSNQTSSDRYKNFLDCLLDRERIIVGNRSVIYAPSNNLGL
IAIWDEANYAFLEHRTPYPHIRDIALIRQQISGCVLLFACHIPSMPVMYL
EKTGHIECVGYAYRRRPKLFVPKEPGQIPSDAIRVMRNALDTGPVLVQVQ
QKGHIQSFSCANCGQLARCKDCSGPLTKTSFYGTSQCKWCAKIADNACSI
CGSQKIVMLRRGSGRTAYELTQAFPGCNVLTSDSSNPIELLDVKMLKGTI
VVSTCGSEPLVSQGYAAVLILDANTMAVRQNFETAYSTLKRWTAAISLLR
HDGTLIIPGIVNRLVRAIGAWQLVSYLETELEHRITLKLPPAVRIFSITG
RKSEIDIIALHLREFDPVRVFGPISQDDSKFRLIVMNDFKDVNRVMDFVK
KMLDSLRGSSIKIRCDDPEILDEI
>TW101 conserved hypothetical protein (putative ATP-binding)
MQLKQVTITNYTPISDITLEVRRHLVLVGANDSGKTSILTCLDLLLSATT
PMLYSHFQAWHFRDATKPIIISVDINNLDDKIQIAFGINNNRISEIKLTL
SAFLDESQMLTIKREVLYNNTTKPVADSQLTGIGWELFDAGEVPCTASQY
KTVLSGVMESTNLRQHGLSSLTQSFREQIEASPFLENLRERLAEKLIKTM
PGNLNKDAVHLVPKDDIGTQVLGNIRVQVKRQNKSPHMIDCLDGMRSLYA
VAIYDVLSRDASVVGIDEPETHLHPTIQRSLARVLQEESNQKIIATHSAD
IVGAFSPEHVAVVQPNGQVVQPARGFLGEDERIIARWWVHGRLEPLTARR
IVAVEGISDRIILESAAEVTGRNLDRLGIALIEANGSGDMWPIYKLFGPK
GFRIPISLLIDSDAVQHTSVRLGIPKNEFTQNSIYVSKRDLEDEYTRAIG
ANTLWNALRESKLFAHSELRGGGKTEQAVAAFCRKNSSNKVRAALVVSSL
LNEQLAIAIESVNSLLNAIELPR
>TW314 putative DNA processing protein
MKPLCFSEELSEDQAVDYFARAAWSLISEPGDRIAGRLISCMTAPRALGW
LLGNISLPFTLDEFESQQLEKHRSVWKMRADYQQLLKSFQAAHHTGAKLV
VTDKYNKLQDEKPHILWVKGNSPSILLDTSQKVSIVGTRCCSYYGKSVTA
DISYSLARKNYVIVSGGALGIDGTAHMSALSAGKSTIVFFAGGVDWIYPR
GNEALFSKICESGIIVSEMPCGSRPTKWRFLRRNRLIAAIPSAVVVTEAA
ARSGSISTAYHAADVQVPVGAVPGPINSPLSEGCNRLIRDRIAESVTCAD
DVVGLFAPLVVSPIQKDSFGLQASRIRVIDALSKKYDRDISEICRLSGML
FDDVSSLMRLLELSGQVIRSGSGWRLSGRLR
>TW386 putative DNA uptake protein
MHKFRWTLSAATSWSFVISLVLASGLLILVYTKPFFGPDKNSKNVSFDAI
ESPAHTSFTATSSGMNMISVHVAGEIVHPGVYSLEAGSRVNNAIIAAGGF
KPLSDTNSVNLAELLRDGQKIVVLPKDSESSPVNINTADAQRLQSIKGIG
KATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLIKSIKDKVIL
>TW381 putative secreted protein
MRLHLSQSRFKKLCVCILVTSLAFFHTTYVVADESELPSWSEIEKAKTDI
REKQKQIHAINLALNRLSQRLNEASDRVLKLSADYTVGENNLEIIDNSLS
NLNLQRRNAQKSIVESSKQINRVITGMFQGSLIAFDLDAFKVPDGLLYGL
TVMNRYTDNLSNFRNKMFASYNSFSYIQRQIEETRLLQKKLIVSVDAKRA
EAVKSVEQLKLDMARKRDLSTRLLSMLASLKGTTLAKEKQLKQEEERAAI
AKTEPARSTGINTKIIEIDSNTSKTGGRTRKNKNKKDDSNPLYLLAISGL
PKREEAKRYAKKRVFDRGWNEKEWKCLEILWTRESTWRWNAYNLSSGAYG
IPQALPGSKMANIADDWMTNQNTQIEWGLSYITSRYKTPCKAWEFWQKSN
WY
>TW713 putative DNA polymerase
MPSGKSRANTSNSRSAMRAVQEPSVASGSTANALPPADVWNDIACQVRAV
QELKGTIINPKRMINSWLFYGPSQSFALALAYASALLSPNAMKGEPNGDK
ETHSMVSARTHPDLRILTTENVTVPIREIRELVMKAQLEPSLADKTVFIV
EDLTRVPRRSLNVLLKPLEEPHAHVVWILCAPSIRGVTPTIRSRLRAIYL
NEPSIENLAGYLTERRGIEKSLACEISYASLGNVDDALYLVDNESTRLMR
KKALDLVFCNRDLAEAVCSAQTILDLVSKEAESVVQKRDLQLREGFLKNF
AFKQGDVIPKQLEHLQPRRDNKQQVSRQVRDALDGIFLSCLSVCRDVLAI
KSGATNCLYNPGSRILDKLSSMPPEKILRNVKALEYARDALKSNVMLLLL
LESSLVQMVEM
>TW243 putative ATP-dependent DNA helicase subunit
MNMSLRDSRHMCSILNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLV
LRLLWLIASGKLKPESIMGLTFTRKAAGELASRLQKSLAILNSYTGDVLS
PEIDVLTYNSFANSIYQDNALLLDHPVPYTAIEDSEAQLIARRLLVEHGL
DEDEPSETIDNLASSLIKLDDAIVDNLLDLGELNQFASEFIEFVGAFDAP
VAKSDVFRAKRLIALSKLIPALKDEKKLRGRISYSEQVAFALEVCRQTHV
LAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFGNRCRVLAVGDPRQAIFGF
RGASVANIANFARDFVSNKQYELSISWRNDKNILDLANHISPKIRPLHPR
PEANDGSTSLEVYTDPEQEVHEGALWLNSVVEKGTAAVLTRTRSRLISVS
RVLDEIGVSYTRADVNIFYEPGVVDILSCMRIISGVNENLSFLRLITGPR
WQVGISDLHALRGYIAVGKKNLDRISLLEAVNRINIQKTPMSCEGKKRLE
DFLEFFRKIKGLSFLSPLELAYLIEESLNLDIEVQMSHRGRENLDALYEL
IASFRGDNLSEMLAWFDSLEEEDAFRGPIKQSCPGQVELFTVHSAKGLEW
DWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRESLPEFYFHKCSDS
KEYRAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPGQF
LREISEFLQTDLPQAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRS
IEESEESLKKEPLKALIAGMLKELDISVDKPEKRISATALSKKDPNVFLL
PQPPIKNAWLGVAFHAWIENYYSTYSDMLFHENSADEYGISGPVFEQSQR
FSPELDQLRHNFMQSEWSYKKPIAVELSLEWLIGDVIVPCTIDAVFFDGD
RYTILDWKSGLSSNQYRIQLSLYRLAFAEWKGVNPDKVEAKIYFAADNRT
IKVRPYTVDELGKMPGFLSDLFS
>TW389 conserved hypothetical protein
MSIDPLVLLSGKCEYSANEAIASIRKKITDSLSAPEVHVIYADNYSAGEL
HRLASPSLLFSPRLVIVKQVEECNDIFLDEAMSYIQDPFKDTCVVFRHKS
GIRGKRLLGELRNIGVEIACPDLTPSRFVSDFFKKEKRNITQAAINLLVE
SFDDIPELAQFCKQIISDTKGTISAKGTISECEIAFLCWSRPGASVFRVV
DAAMNGDEAATVLLLSRLLTEGGSAIPLVAAASARLRLLVKVKYGKKVTA
APWQIALAKKQLAPWTNSSFMSCILALHAADRALKSTAGNPNYLVEHAMR
LIARSARLD
>TW090 ATP-dependent DNA helicase
MTIPADLLKGLNPQQVEGVCYRGPTLLISAGAGSGKTKVLTHRIAGFLAT
GEASCDQILAITFTNKAASEMRHRTGDLVGLSVRDMQISTFHSVCVRILR
ECVGHLGKAKNFTIYDAADQRAIIKQICQSTDTFGLTASMVASQIGLLKN
QMHTPDTYSRCLASNSTNGNSVTSITLQREQFILHVFRRYQEILKEANAF
DFDDLISETVFLLQKSPEISAMYRNRWKYLLVDEYQDTNHAQYRLILELT
KGDKSDMSLTAVGDSDQSIYAFRGADIANIVNFENDFPDCHTILLEQNYR
SCQNILLAANALISNNQNRKDKNLWSELGAGEKVVAYCASSAEEEGRFVA
DRVRHLVDQGESLSDIAVFYRSNTQSRAIEESLIRQSIPYRVVGGTKFYE
RAEIKDILAYLTVIVNPDDTLALRRILNVPKRGVGTVSENRLVEFASARG
ITLMQALSRIDEINIQPSAKSALRDLFYLLNRFAGSSMPANELLDDLLKA
TDLLSRFNNTDDPQNEARKINIGDFVDSVEDFAKENPGGTLSDFMTNIAL
MTSYDQSDDAPGQITLMTLHMAKGLEFDFVFLTGLEEGILPHEMSLKEKN
GIEEERRLAYVGMTRAKKVLHLSFSSYRKRYTDGVRLPSRFWDEIPQHLL
RWHSRFTHKRFTGPLYGFTARPAGESRQSVHVLKDRYPRESFSISDSVKH
SVFGVGTVVDVLGLGPKQIIVVEFADKRRSLLASIAPIVKCKQ
>TW312 conserved hypothetical protein
MTHDVSKYALGRIAEDKACNYLSVNGYIVLDRNWYCRFGELDIIARKNGV
IVAVEVKGGKRNADYPICNITVKKLSKLTFLLKAWLHENKLNEFCIDLRI
DAVSVTFIPELQIRHFVGIL
>TW300 putative DNA-binding/repair enzyme
MSSVEFAVRMRACAFRVKVYSSQTHIIRVKIFRYASVIDDAHKNTRYKTR
SLSEGSCDCHASNKNSSLTTDLTAEARREILAYFSGTLKTFSVPISLEKA
SAKQADVLNMLLKIPYGGCVSYGEIASKVNSSPRAVGAYCAKNPLPFFVP
CHRVIRSNGEVGGYCGSSNNLIKHSLIEIEQKNS
>TW242 putative ATP-dependent DNA helicase subunit
MFMDISECSLPDAIDSIARIPEGSRVSVIGPPGSGKTSLLLSLLEKYSES
FEPEEVLVLAPGRLLANRLNGIALPALLKEKKVRSGRLVVTPASFAFRIV
QNSMKGERPTLLSGADEDQVIAETIAQNCELFKSSYARSPNFRSRMRFFI
EDLSRHGIDPAHLGKIDRWKTYAALIEKYRLARTSNNAFTAVEIIERAAQ
LASTGYLPYRVIMVDEAQELAAEHMRLFSALARRNITVILFGDPDKAVAR
SASPSIFLDFSEKLFVLKTVFRTPRNLHLLSQKICQGIGVTGSVLAHRQS
FNSSILEGRVETVISSSRATSMADIARWFREKHLLEGIDWEDMALIIFQR
SSAEVYSHFLERFGVPVQILGGGLNLSEKPIAGAILNAIELACFPDILTG
KTLVKLLLSPIGGFDVFLMRKLTIELKRIAPKNIQVLNERLLWAFHAYRK
LQTQDTDEVYRVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIWHV
YSFLNLKSAVSKEPWQTSKVSHRVLEEVIALQKLADAVSKKDPLCSAGLI
LQKIINAEVPVDNLSIREKRGCVTILTPASSVGYEYRAVVITDIQGSHKM
DSTQLDPELALADINNIPFSRYLESKLAGRRHNLLRTLYQAVTRSTSDLL
VSVIDSAETSPSWLFYAFFSDYPSCELSSLPLTLRGIVTQLRLDLERDPG
NTEAASALRLLAKEGISQADPQNWYGYLSRTENKSYVMDSIKPSALDKFH
TCPLGWFTDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQPNLNEFLDYA
YAKLREADFESRWVLEREKKRLVGIIRKLVDYLIDFDAHGGTLLASEKSF
SFDLNVFKDRSIMISGQIDRLERLSSGEIRIVDLKTGSSLLSKNDAESNL
QLSAYQLAVEHLDIVYETLPSAMLIYPAVGTKKAAIRIKGPMDRDSKRVL
KNTIRDLLLQNESFTLTAALEEHCESRTACKKLMVPHVSFSVK
>TW245 putative ATP-dependent DNA helicase
MTIDVFSGLSDQQCDAVRTLRGPVKIIAGAGSGKTLTITRRIVNGIISNE
YDSGHVMALSFTRRASMQLRSRLVEHGVKGVYSGTFHSAALSQLRFFWET
FHGKPPRQIIRDKVNLLRDAARGINFSFSDESLCQVASEIEWAKQNGYDL
SGYDKCNHRISGMSASQARTLMLAYEDVKNNRRLIDFEDILSLTVGMLSV
QPRAVARVRDRFRVFLIDEFQDVSPLQFELLRIWLGRRRDICVVGDPNQC
IYSFAGAKRDYLVKFADYFPGAREVFLSRNYRSRPEIVCLSRHIIDSHSP
DIGLYQPTEGISRNYADTKTATPAQDMRVNAGNRAKCHCTAPPGTKGAVR
CGNSDLGYRETPIRWHTFENQIQEMHFIAQSLKNISQSCAVLYRTAIQGE
RLAKYLHTSGIIYRSQESRLFHETDVAQIACKRVIEKTIECNVRVVDLVD
SVVSGIFPRKPDALTGEYDGWVALQALRLCARRFNGNASSFATYLLEMQR
HRREPEMPFATLATLHSTKGLEWDTVYIIGVNEGLIPHHTGDEDEEKRLF
YVGVTRARKNIVFSSTRTPSRYLTELCLSPISAKE
>TW788 putative serine/threonine-protein kinase
MSFDAGTVLGKRYRLIARIAIGGMGEVWKAHDEVIQRHIAIKILKEEYVG
SRDFIERFRTEARHAAIVNHVGIANIFDYGEEKGIAYLVMELVDGEPLSA
VLERERMLPVEEVLRIVVQISRALQAAHSAGLVHRDIKPGNILISESGLV
KITDFGIARIGDQVPLTTTGQVMGTVHYLSPEQAAGKKADAMTDVYSLGV
VAYECLTGKRPFVGDSQVAIAVAHVGDTPANLPKDIPRPVARLVLGCLEK
QPQRRPKSAGNLADAASALLKDDLAEAARAYPPLAASGEQNGSGQVLDNQ
TKAISTTTSLYSKLGQFDTRLLGQTMEFNGGSESKPARGKWVLPVVGTIT
ALAVIVGGGALAIIVTGNRGGLTETKTGVSTHDVTQTVASYIPTIVSPNT
RPAGNTVVIDPGKYVGLSFDGVQKALFALGVGIKRLSAGPAPSADKAGLV
ESISPTGTLTIPAVIDVKVYGPPVMTPPAFAPRLIGTPKIGGSVYVSWPV
YTSCPAGSQVTLYRISVDGAVLQGPGTVGADTTQVELLLIQNEASVKYSA
DCSVPGKNQTFNSGFSDVLKISTNGSHTPSIASSG
>TW109 putative NUDIX hydrolase
MHYRVLESTLLHKGAVWDVVQEKLDYRGETISREFVSHPGAVGVLALNDK
NEALLIRQYRHPIRTREWEIPAGMLDLSGESPLDAAKRELSEEVDMCAQT
WHTLIDFTLTPGGSNEVMRVYLARELRASQAKFNRKSEEADMEIAWIPME
DLLFSVLTRRVQNPVLMLAALAAHEGLQVQWKYLRDADEPWPVYERLKGL
IS
>TW704 putative exodeoxyribonuclease
MLEVASVNVNGIRAAHRKGMDLWLKERNPDILTIQEVRAQESDLRGILPN
WNISFDPCSIPGRAGVAIASKFPPIAVRTKLRANKILNPETASEEPLNTS
GRWIEADYDIAGKLVTVVSCYVYAGEARTIKQEEKMAFLQAVEKRMKSLV
KEEFALVTGDFNVGHTTLDIKNWRGNLDKSGFLPEERAYLDALVGNESDK
EYNAGAGQGWIDVVRKIKGGIDGPYTWWSMRGNAFDNDTGWRIDYQFATQ
RLKALWVAIDRQKSYAQRWTDHAPVVVKYDF
>TW130 putative helicase regulator
MTNAVIKDRTSHLLSALARTVREVEMSLVRKRIGPSSVMRFHAVALLLRQ
ERARVKSDPDITDTVRTELIRRLDGLAAVMVRIAARDTALMSIVTPDAPV
SDGALLYRRRLLSQIGVIDSDGESSEIREAAPPPPSLELYPQSVKMYHAT
HIFRPPGPDMESDLVPIIRLANWDLVGSVFKAFSQGGASVCKSLPAPSPF
LDRLAPDGLSMMPHQAGFVESARLGHRSFLLADEPGLGKTAQSLLAAGVT
NSFPLLVVVPNVVKLNWVREAKMWLPGRRATIISGDDLDAFADIFVINYE
MLDRHMLWMVDFGFAGMVVDEAHLIKNFSSQRSGNVLALAQHIRKKCCNP
LMIALTGTPVINSVEDFRALWLFLGWLAGPRGRDLSPVFVSELEKTGLTP
EDPGFSETVRDVMGHLGIVRRRKTQVAKDLPERMVVDLPVELDGDAFRSV
KNAEDDLADALYAQYISLKHLRIDDYQIRLKAVERFAVESKDSSALNIFS
IVRKIGITKAPLAIDFTIQMLDSVGKIVFFAKHIEVMNMAEEMFCQQGIR
SVSIRGSQTPNDRKNALRTFDEDPDTRVAICSLTAAGLGINLQVASNVVL
SELSWTAAEQGQAIDRLHRIGQTEPVTAWRILGAGTVDIRMAALVDSKSN
DAILSLDGGDMREVQQESLHIRSLLDLLDDRIRKAEQHVE
>TW108 putative DNA recombinase
MSKNTVTKVADIAIPPDIKPDFDWFFPFAKLELGLSDATLQTYRNSLGIY
LSWLGEQGTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAALRTFHRHL
VLEGRQALNPTEKLQQPKVPKALPHPLSLDEIINLLKAADANQAREISLR
DRALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGS
YARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVL
TATAAGVPWLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSF
ATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYTTSHPRAL
>TW783 putative DNA methylase
MRNGGTCWSPDGDNLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTR
QCSKMVRSPYGEQIGFCGNRYKILSESRTEYADMFDDYLGFLKPRLHEAW
RLLKPEGMFYLHLDYREVHYAKILLDSIFGRDSFINEIIWAYDYGAKTKR
RWPAKHDNILVYAKDPRKYLFDSENVDREPYMAPGLVTPDKAKRGKLPTD
VWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWVLDFFAGSGTT
GIVAGKLGRKFVLIDNSPQAVKIMKLRIDRSLSENPVRYTKLY
>TW691 conserved large hypothetical protein
MHTDGILTLNGFLEGKIASLGGINPLLHYHDSGLSGIELSKAHPGGIPQF
VTGKTVLLSHLVRDEIALKEARQAASNLVAKGNNLLSFRGIHSIHLAIGL
TKWTFKSVGYCAPVLLQPVAMRVYRNDFQMKLMGYPVFNAELSVALLEQY
GISLDPESFVTLATESGNFKPQPVIEHLRLMTSSIDDFKVFPRLVVSCFF
HPARSMLIDFQKVTDNPFVSALIGRREELDLIRTDKSLKLPDASNQLLLE
ADDEQKLVVSAILEGRSLAIRTTPGAQVTQAVVNVIGGMLANNKRVLVVS
ARQAHFNDIRNHLRRLGLAGLGVSIPRIRHDLIDSIRRNEGARPLHMLEV
NDALVRLRRVLLDYRRALHGKDDAIGVSPLDAIEKLAYLSLLEHPPSSAV
RFDKGSLEKLSRRKGEAADLLRKTAELGEFECGPGDSLWYGISFATNEDA
LAAHNLAKHLFAIGLPILFDKSDALISQTNMRSFKTLDELRAILECFQDS
RDILEIFRPEIFGLSLEELIEATSPRRRSPGLSSGKRRQLKKLVREYLLP
GVRVQGLHDNLVKIRQLRLLWDRYSPAGTTPKIPVGVADVKVMFEKVKSD
IASLNKLFANLHLMNMPRIELMKIFESLAADSESIKHIKQRTDIRDQLRE
IGIGDLLEDLSIRHVPPSRVSDELDLAWWQSVLEFFLKNRSALLGGNTSV
IERLEQDFKLVYRASMAAAGTLLAWNMAESWKVALVDYPDEAIELKDLLL
KGHLVPEKLFGKAPNLAKVLSPVWFASPYSVHQLSCDFDTVIVLGAGELS
IAESLGIVSRGKQIVAFGDPITEFPEHFDIASFGANEEIYPRKTSYFTSR
DTQEESLFSKLSEILPSLEMNNSHRPYGLIGIANSGFYKNKITGLPWAGN
FLGQQSVTFHYVPDGTGLPDRVTSLVEAVDAEVNFVTSLVAKHIADESCM
VVTPSLKMATRIRQELKKYDDQLLAKKSSEPFIVVDPRQALSYTRDRVIF
TLGYGLTPIGGVMSGFGPLDGDDGEKLIAIALTRARRCLDIVGCFQPEKI
DTKRLKKGPALLMKLLSSYNPLNTDSSFETAGSMLDDLARRLELVGIKVR
VNYCAVLPLAAGYANRAVAVDIDNTFDDLHDALSLRPRTLEELGWIYMKV
HSFELFTSPDEVAGRIKHALGV
>TW315 putative DNA recombinase
MCPCGDTLNEGFCCLIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIIT
HDSRENVKSLRDVSIQDLRSWLYSQSHKSARSIRRAVSSLKSFFRWAYDR
KITAQNTAAALRAPKSTSQLPSVLSEKRIAQILGNFSHTVPVIQLRNTAI
FELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFGKPASHA
LDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRG
PHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYN
QAHPRA
>TW446 putative TatD-family DNase
MPLTLPSPVYDSHTHLAPGTDYKDQLDRAEAVNVIGVLQVGTDVNTSHAS
VELAMQDQRILAAVAIHPNDAADIYKKANDATHRVEGQPHTECEKCIPPA
KALEKSLTQIANLAGSKRVRAIGETGLDYFRTQSDLYRAAQRFSFDAHIQ
IAKEHNLALQIHDRDAHRDVIECLLRAGAPDRTIFHCFSGDEQMLEICIK
NGWYMSCSGIITFKNAREMQKIFAKVPKELLLVETDAPFLTPSPFRGFMN
SSYMLAHTVRALAEIRQENIDQLCTQLSRNTCEIFGKW
>TW394 conserved hypothetical protein
MVKSVADRFFLGLDFGSTRIGVARNCGSLAVPVGVLPRASCAEILGYISR
YSIDEVVIGLPLTLAGKEKQSARLAKEFSRFLVSSGVQVRFFDERFTTVI
ATQKFYSLGKGVKQIRKCVDAAAATVMLQLFLDMEVKVDPLERKP
>TW656 conserved hypothetical protein
MRIIAGFAKSIKLEAPTRGIRPTTERVRESLMSSLQARMLLEDAVVIDCF
AGTGALGLEAVSRGARVLHLIDKSAKAFKACKKNADRVKAFCEHAQIHVH
KANVTTFLKSSLQHTTRASLVFLDPPYDYPPHKLEEVFIHLLHWINEDTV
VILETDRANGTPPVGDALKVTEQKQYGHSVVWWMSQP
>TW165 putative serine/threonine protein kinase
MIPFFNKHTRSTDDKDTEKARQIIGNYRVIKTLHESDRAVIYLAQEISGD
PGMVARQSFMDPGELVNLVALKMYRAGVTSEHIAIEADALDSLRGPGVVE
LRDVLNLPDKRGLVMRALHGPALVDLWETRGSLSPGEMVTILASLVATLA
RISSAGYAHGAVWPGNIRFDDIGRPVLTGFSSARKHAPPNADWLDFYSLL
RGCAVLINEKQEQMLQISAGVRKRLDPFDPELPAWVEASLFRLADPQPLR
FEHPISLHDTSGYNLRESPNPVDSNRQTGKSQIILKLTDNKYVAAILGKL
KRPSVLFIALFVSVFVVLLMVIPNNSGEDNERKSEKPGYVKSKGTFKKPS
KTGKSRKRSEVSEKLRKNMEECLASKDADCVDVMSEINADLGEKLDEG
>TW001 dnaA, chromosomal replication initiator protein DnaA
MNKTLNPQEVWIKAVRNLEGFFSSPRVIGYLKKASPSIEGESLIITFPNS
HLASVMDDIEVYDATKKTILDSYPSIKEIKITISPDVLEKEITEEINDLV
QSMEEEDFALIDHTKPVIPNFFDQNTRVNFGGGPNNHHPTTGVNPRFTFD
NFVVGKSNELARAASISAAERPGKSFNPLFIYGDSGVGKTHLLHSIGNYA
KFLFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKYRQIDILMVDDIQF
LQKKQETQESFFHTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRFECG
LVCDIQKPDLETRIAILQKKCQNEKKEVSMEILTYIASCFSSSVRELEGA
LLRIFALASFNKEEINMTLAQKVLEDLGAQRGDKIDPIEIIEITAKHYDL
AASDLCGNSRVANISIARQIAMYLCRELTDVSLPKLGYIFGRDHSTIIYA
TRRISDLIGKDRKTFSDIYKLTQFILRR
>TW752 dnaB, replicative DNA helicase
MSDTKQPPCDINAERALLGSVLLSKDAAAEVFDRIKPNHFYYEVHKEIYK
VMLDLYAASEPTDMVSVSESLRKNHRLEHTKGFEYLNGLAEMVPTPANVY
FYVNIVMEKAILRNLAQTGVNIFHMAMDGVHDVEEIVNKAQSDIFSVTTD
ESDDDLIRLDAVVKETCEGLDESHTNEDVLRGIETGFTRFDSLTNGLHPG
QMVIIAARPSMGKSTLALDFARSAAIKQRVPTVFFSLEMGRQDIAMRLLS
AETGIPLQNIRHGKLSPGDWGAIGSLQGKLADVPFFIDDSPNVNLVEIRA
KCRRLKQQGLGFVIIDYLQLLSGSQRVETRQQEVSEFSRSLKLLAKELQL
PVLALSQLNRSSEQRADKRPAMADLRESGSIEQDADLVILLHRDEYYDKN
ARAGEGDLIIAKHRNGPTDNIPVAFHGKYSRFADLPRQDMR
>TW252 dnaE, DNA polymerase III alpha subunit
MRDYMSFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFG
AFDFWKTAKTYDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGA
YTHLTLLSQNNEGMHNLFKLSSLASIEGYYFKPRIDIELLNQYSNGLIAT
TGCPSGEIQTRLRLGQYSEARQAAAQMRDIFGPENYYCEVMDHNLEIEKA
VMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQSGSTINDPNR
FKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPR
FSVPEGETENSWFASEVKRGIASRYPNGPSRRVIEQAEYEIRVVQEAGYA
GYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIF
ERFLNPARISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKA
KQALKDSARVLSYPYSFGERLTKAMPPAVMGREIPLRAIFDTTHSRHREA
SEVRQMIESDYEMQQIFNTAKGLENLKRQWAVHAAGVIMSDAPIIDIIPI
MKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDALANIRQNKNT
KVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDDIS
AAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGL
IVYQEQVIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRK
AGYSDGATEALWNVLLPFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYM
AALLTSVETSRDKLGLYLQECRHMCIKVLLPDINVSRSGFTPSGENILFG
LGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSVLNRRSVMSLIQA
GAFDSIHPNRRSLMDIHRSVLENCQANARRSDVSLLDGLLDEYEGFSPPD
IPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQ
DVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIMLSGQNYNNFSE
QLVTDSIVSVTGRISFRDDATTLYCDSIKDVLPVKKEARLRLKCSEGFLT
QNVFIALDDVLRKYPGDTPVTMEVIITDNSVVKSKTFELSRCVEISNDLI
AEVKGILGVEGISG
>TW484 dnaG, DNA primase
MSKIKQEVIHEIKERANIREIIGEYTNLKRQSAGAYAGLCPFHSERTPSF
HVRETGLYHCFGCGKGGDVISFVQEIEGLNFVDAVEQLARTLGITIVYYE
GDSTPDSRSNLLAACKSAAEFYSEQLLSSTPAVTFLKSRGFDRDLCERYQ
IGFSPTNSGDLYKHLRDKGFTLQQAVAAGLLNPSGMDRFRARIVWPVKDV
TGNIVGFGARKLAEDAQGPKYINSPESSLYKKNSLLYGFDVAKKAISKKD
RVVIVEGYTDVMSCHQSGIDEAVATCGTSWGIGHMRLIKRMLSDSGVLIF
AFDGDQAGQHAIMRAFKDSPEIAARSYAAIFPKGLDPCELRIKNGAQAVI
DLVERAIPLYEFVINHQLSKCPLGTFPERRAALAKILPFLKEISDRILRD
HYTGLVCSRLGIDREQVDLLLPKLEHISSRFHPSKIPWQEDWKKKEFAAP
TNPPDARFALEQQVIKSLLQYQHLLERDTAIAMCDYSFHNPTLSFIAQMI
GMVIREQNRSISPAEFSKLIHSTVPSEYHATLQALEVLPVPVSPDKLDSY
LEGLVRSFENQHLLEEKALLLRQLSSEKSLEKSLELRQRIVELEKQRNSL
LPD
>TW002 dnaN, DNA polymerase III, beta chain
MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYE
TSAKVEFSANVIEGGKVLVPGTLISSISQKLPDEPVEISKEDEKISLTCG
PVNYILNLMPIAEYPPLPNLENAEQYRIPSEDFVKSVSQVTTSAAKDDIS
AVITGINLRLSNESIELTGTDRYRVAVKTLNSVSGHPSDSSVIVSSKTLF
EVSKTLGNLESEISVFIKNDGENKVIGFESGNKTVTSLLISGNYPPVAKL
FTEETGHYAILKTSDFLESTKRVSVVVERDEPIEFSFVKNTVTIKGSGIA
LASEKVECELFGDEISIMLRPQFLCDGLIACQEDFIKVAFTKPSVKNRPG
PVLITPKLSNKEKIDFKYLLQPNLFAK
>TW727 dnaX, DNA polymerase III subunit gamma/tau
MMRSEQALYRRYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRG
CGKTTSARVFARCLNCVNGPTSSPCGKCQSCIDLGRSGNGSLDVIEIDAA
SHNGVDDARALRERAIFAPAQSRFRIFILDEAHMVTTQGFNALLKIVEEP
PAHVKFIFATTEPEKVLGTIRSRTFSYPFALVSASIMQPYIADICNKEKI
RVEDGVLPLVVRAGGGSVRDTLSILDQLMVGKCITYESTVGLLRLAPDIL
LYDLFLAIAEDDGATAFASIEKVVEAGYEPVQFIEDLMSWVKDMTLAVCN
AEGVFDSYAPEKVERIFALSKRFSLKDLDAMAEILFSRSNRLSGPISPRL
LLEIMLASLLLAVGKSKLQVSDRVSDTQRQKGYPGNLLHNWSRVLDALKS
ETANMLQHSKPLRLTGSSLTIGMPQEILSRFVANKAAIDDLKSVLYKITG
VQLRLSGKPIDDPDNTVKTPSSCLDNGTVTDNSGYKNTEVDDAETKEKPD
NPITGEAVLVQAGAKLISEEEQ
>TW006 gyrA1, DNA gyrase subunit A
MSEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAM
YKGGYRPEKAFSKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPL
AQGQGNFGSPGNDGAAAPRYTETKMATLAIEMVRDIDEDTVDFSPNYDGE
SVEPTVMPCRFPNLLVNGSVGIAVGMATNIPPHNLAEVSAGALWCLENPD
ATDEELTEALLERIKGPDFPTGATVLDTGGIKDAYLTGRGSVVMRGVVDI
EEIDGRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSGRT
GQRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGAPRTLSLCS
FIRLWVEHQIEVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRS
SKSAEEAQSNLMALLKIDETQARAILDLQLRRLAALERQRIISEAREIEE
LISSFRKILSDKTAQCQVIAEELREIGQKHSDARRTEIIRGFDGSVSIED
LIPVEPVVVVMTRCGYIKRTRIDQYRSQHRGGRGVKGAQVKADDVVLQFI
STTTHNWLMFFTNTGRVYRAKAYEVPEASREARGQHVANLLPLKPNEAVT
RILSVSNFDSEDTSLVLATKDGYVKKTTLKEYDTSLSTGVIAIKLRPGDK
LVSAVLARSDQDIILVTKNARSLRFKSGTLRPLSRGSYGVKGISLRENDL
LLSAELILSDDSYIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITEQK
GVLADMLVVNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDG
DKILAMTIAEKCDDLEGQG
>TW273 gyrA1, DNA gyrase subunit A
MDKDIPEIFDVISDNEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDG
LKPVQRRILYTMSRMGLSPDKAHVKCARVTGEVMGKLHPHGDAAIYDTLV
RMSQDFTMRIPLIDGHGNFGSLNDGPAASRYTEARLSRAAVAMINDLESN
VVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPPHNLQETV
RAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKGSFK
IRAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDV
TDLSDRKNGLKLVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGK
PKTLGMLDMLKVFIDHRVCVITRRSKFYLATHKKRLHMIDGLLLALVDID
KTISIIRNSEGIKEARKNLMKCLNVTRDQAEYILDIRLNMLTKLSTIKLQ
SEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRTILESSV
KSKKQKTDYPRQVVLTTNGFIFTIEVNNDLISELSQPETFDMTFNTHSEP
LRVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFLGLE
NDEEAVLLFELHQKESLAIATSSGIVKRVTPAIWPDRTERVITLSAGDRV
VGAARGVSSCGYFVFITAKGNLLHYSAGLVNPQNRPARGVAGVTLKDDDD
RVISFGYTEDVDRANVLTVSKRMTTSRLSSYQTRGRATRGVQCHKFLKGE
EWLHAAIVGENLAAIDNLGNVVAIGKSSVTAKSCAGVKQYRLPQEKSGKS
KREDRLIRYLGYPFVHGNDTY
>TW005 gyrB1, DNA gyrase subunit B
MVDTPEPAYGADQIQVLEGLEAVRRRPGMYIGSTGSRGLHHLVYELVDNS
VDEALAGYCTKINVAILADGGVRVTDNGRGIPVDIHPKEGVSTVQVVLTT
LHAGGKFGSGGYSVSGGLHGVGSSVVNALSKRLYVEVSRQGFVFRQNYEG
GNPTAALERCEETNATGTAITFWPDDDIFETVCFEYEVLRSRLQQMAFLN
SGLTVSITDERVDSPTNNETYCYQNGLFDYVMYQNRIRKHEPLHEEIIHF
QAENKDRLMSLEVAMRWTSSSTENIYTFANTINTHEGGTHEEGFRAALTS
LVNRYAREKGFLKEKDESLQGEDIREGLTAIISVKLGEPQFEGQTKTKLG
NTEMRGYVHHEVNSYLWDWFDSHPAQAKVIISKALLAAEARLAAKRAREA
SRKRGLFESVSMPGKLKECQAKDPAVSELFIVEGDSAGGSAIQGRDPLTQ
AVLPLRGKILNVEKARLDKAIANSEIQAMLTAFGSGIAEDFDESKARYHK
IILMSDADVDGQHITTLLLTLLFRYMRPLIESGYVYLAHPPLYRIKWSNS
EHDYVFSDRERDKKLAEGKLSGKKIPKENAIQRYKGLGEMNYRELWDTTM
NPATRTLRQITVDDVTLADEIFSVLMGEDVDSRRKFIQHNARDVRFLDI
>TW268 gyrB2, DNA gyrase subunit B
MSSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVD
EVLAGFGNVVNITLHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLH
AGGKFGTGAYFTSGGLHGVGASVVNALSEKLSVEVDRDGMTWVMEFRNQV
TSGLRSKCKIASNVTGTRVRFWPDPLIFGSAEICIESLHQRAMQTAFLVP
GLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELITDVLCIRGKGSFSE
AVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNVIETPKGGT
HYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPE
PQFEGQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVA
QMHFRLAARASRETQRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDS
ALGTARRARNSEYQALLPIRGKILNVQKASVADALANAECASIIQVIGAG
SGSNFDIAQARYGKVIIMSDADVDGAHIRILLLTLFFRYMQPMISSGRVF
SALPPLHRVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYKGL
GEMDADQLAETTMDRSKRTLLRIRMSDAQQASDIFALLMGNDVAPRREFI
ANSVVSTDRIDS
>TW128 hup, DNA-binding protein HU-alpha
MVSLNRTELVAKVAETSGVSRATVNSVIEETFAVFAETVRAGGKVTIPGW
CSVTRSHRAARTGRNPQTGKTVEIPAGYSVRIAPGSKLKAAVK
>TW354 ligA, DNA ligase
MPHPDGDLDRRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAE
HAKGFSDRNSPSLTVGIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYE
KTKKICPEGDQCTFVCELKIDGVGVSLRYANGYLISAATRGDGAIGEDIT
QNMLYVPSIPPRIALPGIFEIRGEAFIKRDEFDRINQLSLERSKQFANPR
NFVSGCIRTKTPNMRYLESISFYAHGFTQVYGYTSGGMNLHSDITASGGV
KTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVP
YAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSV
GRTGRVTPYAVLQPIQLDGSEVSRATLHNQKVIGDKDLLIGDYVRIRKAG
DIVPEVLCALPEKRDGSEVLFKMPSLCPSCGAELMPSKLGDIDLRCPNMQ
SCLVQLAGRLEYIGSRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKIT
IDDLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQDMVDSIERAKRSP
LWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRSLGETIA
ISVHDWFRDPWRVELVNTWRSDGALFGD
>TW589 mfd, transcription-repair coupling factor
MNLLAAIEAFIPTGFAATACPGGFSACKVASLVGDVDSLLVILPSEDACF
TDTLRTYLPESIILNFPEWDTLLHEQISPSPERVSARMEALHKISLFRKN
NKRAKNAQTSKTLHDIGILEDNLPTIHQKLVVVASIKAFMQPIISDGNPP
CLYFHTGGEYELSEIANILVAMSYSRTDLVGARGEFAIRGGILDIYPPTE
KHPIRIEFFGRQLESMRHFRVSDQRSIGPYVSNNAHVGMFAQYQDNSVCK
CNVSLSSNPHRCASHLSINNTYKPSAVMAPASEALIVYPTSEFPEEDQIN
NITPKSLLHFMPGKSTVVVIKCEQLTSKIEQLINTNREFSEAFCTPDAFS
ATNKYARNNHDGDNTLDGIAEKINYYTLEGLRHFAADLGIGWTDLSGFNS
EDEKSLITANPDFSGYSVFDHIRNLQKSGWQIVLASTNNRVYPTLDEYGI
DYLILSANTDYSSFEECRECSTRQESPQVMCTPSITQSCTHDRTGAQQKS
YISDLFFKQADPDAVDSGLIKHRVVVIDSYIQEGFSVPTKSFTLIGEHEL
FGKTTLQKAPRISRRAIDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDA
PEQEYLILEYAKNRLGVADKLYIPTDQLSMISKYIGSDRPTLSRIGGSDW
ALTKSRARKAISSIALDLVKLYSRRSITKGYAFSPDTPFQTHFENEFLYT
ETRDQEKTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNK
QVAVLVPTTLLARQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTICGIS
SGGIDIVIGTHMLLNKKIQFKDLGLLIIDEEHRFGVNHKEAIKKLKIGID
ILAMSATPIPRTLEMSLMGIKEISTLSTPPENRMPILTHVGPYRDKQVIA
AVRREIIRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERML
EKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLSQLHQLR
GRVGRGTKRAYAYLFYTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLEL
RGAGSLLGHAQSGHIASVGFDLYIRMVTDAISNFKGEQSRTNNLRLEIPV
DASIPKAYVDSERLRIELYKKISEALSDADIKDIGDEILDRFGNLPSQVI
NLLELARLRILASSRGIDLITLKSDFRQGGDVVTVSPVSFSDTAHQNLLR
DGQFSFICYRNSKLSACINRSSSEHSGYSEHSRQIINSIRHFIITSCN
>TW374 nei, endonuclease VIII
MPEGHSIHRSAIQFEHNFVGKKIGISSPQGRFSPGARLLDKQKMISAKAY
GKQLLLGFENNRFLQVHLGIYGAWQFYGNISCAPTILPGAEGIQSIGAPR
RLKGPCITKNSGSTPGASWKDLMFKHQAQARAKLITDTAGVLLSGPAVCK
VLTPEEADELISRLGPDPVVNPMGYNRFIKAARKSNLQICKLLMNQSAIA
GIGNIYRAEILFRNRVNPFLTSNTIPEDTLKRIWDDWTVLLKCGIKTGQM
ITMNKAPGHWVYNHHKSPCSVCFHPIDCVNVAGRKLYWCVVCQA
>TW480 polA, DNA polymerase I
MTGTPDQSKRLILVDGHSLAFRSFYGTKAIAVVNGVQVNALYGFVNRLTQ
LLESGPVSHFAVAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEF
LHLIGVNHFAVQNYEADDIIATLSRLALEEGFSDVRILSGDRDLIQLVNN
KVSLLFFSAKHRLGFAVYTPEAVMDRYGIEPHVYPDMAALVGESSDNLPG
IKKIGEKTATTLLQKYGCLQKIIESRWEISGVVGQNIRNDYHVALRNRKL
NTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRLLRCLQKF
TNAANLNRALTASPQRRGSPSIRKYNSKTQKPVRNNRVSGVRRRRYRADR
TSVQLF
>TW628 recA, recombinase A
MSSNDQINRTRALELALANIDRQYGKGAVMRMNDAQKAYIDVIPTGSIAL
DYALGVGGLPRGRIVEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEH
ALDPEYAKKLGVDIDALLVSQPDSGEQALEISDMLIRSTAIDLIVIDSVA
ALVPRAELEGDMGDMHVGLQARLMSQALRKITSGLNQTGTTAIFINQLRE
KVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNRTRVKVV
KNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQ
LGQGKENARRFLLENKSVADEIENKIISLLGFRSNEFGDLPDHDAAVRTS
PDTNSRKVSGTGAVHTTSGSPSAGKGTASGAVNNSRDSTGGDTPAGQGPL
NLSVNRDVSTDTVSSKISDATHNQKPAGNGKSVKRKG
>TW003 recF, DNA replication and repair protein recF
MQNNLISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLS
GFGSHRTYKNQPLIKSGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKV
DGKPSKLRDLVSVFSCVIFSPEDIDLVKGDPGHRRKYLDDIICRARPMML
DIYSAYDRTLKQRNSLLKSFRKSSCKSDLLDIWTQKLVELGLEIVNARKR
LLKILNPKISEFYSKLAGVSSTAELFCQSSDCLIDTFDLLRDREIEEGVT
LAGPHRDNVDILLNSCPARSQSSQGESWTLALSMKLSLIELMRETKRLYD
PDPVVILDDVFAHLDSYRKQKLAQEVFSYEQTIVTTTDNSDNYRTSQTLV
VEEGKVFSENKKG
>TW195 recG, ATP-dependent DNA helicase RecG
MASLLAKEFGISRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRVL
STEQRKTFSGANFLSVTLSDGENIIQLVFFHQPWRAENLKPGACGLFSGK
VTEFNNKKQLSHPEYELFSSEPTREQIQKWNEQIIPIYRACIACPSWKIA
RAVDLALEAVKGQTVDFMSGNYGYMSVEKAFYVIHHPTDNEELEAAKESL
RFFEAFLLQSALLHRKRFRNRASATPFIRKNGGFLERFDARLEFSQTNDQ
LRAADEIFEDLSLSEPMTRLLHGEVGSGKTLVAIRAMLLAADNDMQAVLV
APTEVLAKQHHRNLTRMLGHELCAEIQPSLLLGREKHTLRIASGRSKIII
GTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDELLLKGDSPHLLMLSATP
IPRTVALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGREVIRRIS
EEIQKGHQVFVVAPVIEQSRTGAASISALLRELEETPLLQGAKISRLHGK
LTAAECEKSMEEFSCGASDILLSTTMIEVGIDVPNATAMVIVSADRFGIA
QLHQLRGRIGRGNLPGVCLLVTNAPEGSAARSRLDLVARTHDGFSLAEID
MKMRREGDLLGLGQSGQGNYRLLRLDEDLQVLSDARLHAEGIMENDIKLE
KNKLLRLFLSQYLSGTNLSRLLS
>TW111 recN, DNA repair protein RecN
MIEQISIRNFGNIAKADIDFGSDFTVITGETGAGKTMLLGALETLLGKPG
NSKYPHNQSAQVIGIWRVPRHFENVLPCIEGKLTVSREISLSGKSVANVN
GKTANNSYLGKLRNKLLVVHGQFAQVRLKNPALQRQILDGYAGNTDLLKE
YQLAWSELSKTNLELRNIRDNLAGRRAEAIGLIQAVEEINEINPQIGEDE
NIKKQINILENHEQLLGNLRAAKQLLIDNGIIDKITELQQILCEMEGIKL
QHAYGTAIDTALVTMQELSNEITKQIDTLPEDSTEILDEMHNRLGALRKL
QKKYGPTIEDVIDFAKNALARSSTIENDDVRVQELEAKKEELQKNVEYLA
KKLSERRVSAARLLGDSVSLNLPCLAMPEARFEVQVLQKSHDSYGMDQVA
MFLRTSYAGAAQPIGTGASGGEISRVMLAIEIALASVKTVPTVIFDEIDS
GVGGAAAIEIGRRLAALARRLQVIVITHSAQVAAFATTHLLVTKTGNLSD
VCSLSGENRVGEMARLLSGLHDSESGLEHSRELLAMAAREMQGRT
>TW487 recO, DNA repair protein RecO
MCKNWDVSGHYRDRAIVLRTKPLGEADRIITLFTRSNGTSDFVAKGIRRP
KSRFGSSLEPFTVIDAFLYIGRGMDGVSQAEILASYGSRLVKSTESYIAA
NVIAETGRRLGIAGGSVQQFDLLHGAFSALSRGISSPEAICSSYLLRSMS
AAGWRPALENCAKCLLPLVEYTIDISAGGLVCTSCSEHPVVNNKLCEYLL
ALREGDWPYINESDESLRGQARNFVFEYTQWHIDHPLKSLKIVAKSW
>TW726 recR, recombination protein RecR
MYVRIVQDLIRELGKLPGIGPKSAQRIAFFILQNPSFDIDRLSETLQSVR
KQVQFCKVCGNFSEEDECVICSDPRRDRGVICVVEEPKDVVAIEKTREFS
GLYHVLGGAISPIDGVGPDDLNIRQLLQRLADGTITEVVLATDPNMEGEA
TASYIARVISAMRIRVSKLASGLPVGSDLEYADEITLGRALEGRQYIN
>TW531 rnhA, ribonuclease HI
MTNNEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAV
RELLIATRHTDRPILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQ
EIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQAANNFSTRSAHI
PGPGWTERSAK
>TW502 ruvA, holliday junction DNA helicase RuvA
MHGIGFLVRVPQSFNPEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFE
QLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGT
IVLQLAGKLTSVPLENRKQEQAVDRSAEIVQALIGLGWQRQESAAAVESV
LEKDQSLTMPEILRNALRYLAKQE
>TW501 ruvB, holliday junction DNA helicase RuvB
MTSDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQAAKIQGRVTDHALLA
GPPGLGKTTLAMIVAAECGVSIRMSSGPAIQHAGDLAALLSSLLPGELLF
IDEIHRMSRVAEEMLYLAMEDFRIDIMVGKGPGATSVPLELSPFTLVGAT
TRAGLLPGPLRDRFGFTARLDFYSPEELLQVLIRSARLMEIQYYDDALES
IAVRSRGTPRVANRLLRRTRDYLLVSNSSEILSKEIALKAMDVYEVDSLG
LDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAETIENSIEPFLVRQGL
LVRTPRGRQITDLARKHMGFKEDLSGFELYL
>TW503 ruvC, crossover junction endodeoxyribonuclease RuvC
MRIMAVDPGLTNCGVAVVNATGPLSLELLAVKVFHTDRSLSFENRIGKIG
DSLLSMLEEFSPDLFALEKVFAQHNLSTVSGVAGVIGVASYLCYKHGTHI
AFHTPSEIKASICGYGNAKKDQIRSMVNRVFLSQDIPLRHDASDALALAV
CCARRYALHNEHFTEARLRWLSALGASSTERGR
>TW116 ssb1, single-strand binding protein
MDATVTVVGNLTADPELRYTATGAAVVNMTIASTPRMYDRQSGEWKDGEP
LFLRGILWREYAINAAASLAKGMRVVAVGKLKQRNYETREGDRRTSVELE
IDEIGPTLRYATAKCSRATQAGHGVSPDPWADSQTGQGIDSHTTRSEEIT
ENAKNGEGAGKNELNKKVLVGDNVSYEDFDSDEVPF
>TW367 ssb2, single-strand DNA binding protein
MRGKRMNHITVSGLVATEPRSFLTAEGVHITSFRLAAQDRHFSRNANSWV
SGDTNWFTVTGFRALGSNAAESISKGDRVIVYGRLRLRTWGDNKMAVEIE
AESFGHDLRWGTSVFSKRFYQLPEASDNLRTKYDVDEAETPEIHAKAA
>TW715 topA, DNA topoisomerase I
MKKLVIVESPTKVSSVGRYLGDGYVVMSSVGHIRDLPAPSGLTPDLKRSA
HAQFAVNIENDFEPYYVVLENKKKVVEELQSALNNSDELLIATDGDREGE
AIAWHLVQVLKPTVPVRRLVFHEITREAIAYALQHPRPIDENLVDAQEAR
RILDRLYGYELSPVLWKKVRPGLSAGRVQSPATRLLVDRERERINFKSAE
YQAVTADFQVDSDVFSASLTLFGERKIATGRDFDNLANLKTDALVLDKNL
TDRILEELKSKGALDVEAIDSKPYSRNPYAPFITSTLQQDAAHKLGFSAK
RTMRTAQQLYEKGFITYMRTDSPRLSLQAISAARAQVELLYGREFLPDSP
RTYGAKAKNAQEAHEAIRPTGEVFERPESIESVLSVDCMRLYDLIWRRTI
ASQMVSARGETVTLTLSARIPERSIFVLSGTVLHEKGFLKVYEGLQDLNS
KLLPNLQVGDQVTLVDVRAVGHTTLPPPRYTEASLVKVLEELGLGRPSTY
ALILRTIQERGYAHLRNRMLVPDWLAFSVVNLLENFFSRLIDYDFTANLE
DQLDEIALGSQNRSDWLRKFYFGDDNLPGLKEIISGAKDIDARAINSIPM
VGATLRVGRYGPYLEVGDKRFSIPHDVYPDALTPEKIHELVNQPESPVRE
LGAHPETGKLVVLKSGRFGPYIEEVSDEKNVRRSSLFKNMDPEEVNLDVA
VKLLEIPRVIGVNQENGEKVIACNGRFGPYIKCGKETRPLDSEDDILSVT
LDEALAILSAPKVRRSRVLMEFPTDDPVTRRAVQIKSGRFGPYVTDGVTN
ATLDNTSWEDVTFDEAVSLLAEKRQRVDGDLDQETAEKIHV
>TW179 ung, uracil DNA glycosylase
MGYLHVLAQRGVIHATWVSALEPVSSNLAAMGDCLRSLRSKGESFLPAPR
NILRAFRYPFDSVRVLIVGQDPYPTQGHPIGLSFAVDHKVRPLPGSLQNI
YTEYRSDLNLDPPQHGDISLWSERGVMLLNRTLTVRPGIPSSHRGLGWEE
ITQTAVRALAARDVPLIAILWGRHAQELKSVLQSDRVAILESVHPSPMSA
TRGFFGSKPFSKANDLLRDLGSAPIDWRLT
>TW476 uvrA, excinuclease ABC subunit A
MSSRRSFLRVKNARVHNLKNLNVRIPRNSMTVFTGLSGSGKSSLAFDTIF
AEGQRRYIESLSAYARQFLERLDRPEVDSIDGLSPSVAIDQKTTSRNPRS
TVGTVTEIFDYLRLLWARVGVLHCPECDLPVQKQTIQQIVDSIAKIPHGE
RFMLLSPLVRQKKGEFVDLFSRLTTSGFSRVVVDEEIYLLTEVPKLKKNS
RHTIKVVVDRLVSEDNMLTRLTDSIETAFGLSNICEVQTFKGDVFRFSIN
SACPNLHFLNFDKIEPRTFSFNSPVGACPDCDGIGTVRSVNMTTLVPDTQ
LSVEKIALDLIDKKIVSKNFMREMSALARNLKFTLNTPWSDLTDYVQNTI
LHAKNFLLHNTRVRYYTGLVRKIERDVSENSGGSLSGYLYNSPCRSCSGK
RLRASSLCVKVSNKNIIDVCDMPLDGILHFFKALDIPRKFEKISSPILRE
IISRLEFLIELGLGYLTLSRSITTISGGESQRIRLATQIGSGLTEVLYVL
DEPSIGLHKRDNEKLIKLLLNLRNRGNTLIVVEHDEETIRSSDWIVDIGP
GAGRMGGQVVYSGPVGKMPSRSLTGKYLSGELMVSTPKKRRVSSCGITLS
GAKENNLKNITVFFPLKTFIVITGVSGSGKSTLVNSVLCKALSNICKGNT
PSENNCQDADCTDACTVRNGMQHNEQTVRLAPALDGAENISKVVHIDQKP
IGRTPRSNLATYTGVFDKIRDIFSKTPTARARGYSPGRFSFNLKGGRCEK
CKGDGCIKIEMNFLPDVYVDCEDCNGMRYNRDTLQVLYNNMSIHDVLTMP
VCEAVEFFRAIPSIHQPLKLMDEIGLGYMTLGQPAPTLSGGEAQRIKLAA
QLQKRTAQDVLYVLDEPTTGLHFHDVRQLLEILHRLVDNGNTVIVIEHNL
DVIKTADHVIDMGPEGGNAGGSVVACGTPEEVALHPDSATGYFLKKCL
>TW477 uvrB, excinuclease ABC subunit B
MYKNLHPKYFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGK
SATIAWLIEKLARPTLIIAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDY
YQPEAYVPKTDTFIEKDASVNSEVERLRHRATTSLLTRRDVIVVATVSCI
YGLGAPSEYLKAGFRLEVGQKISQRVLLERFTQLQYNRNDVGFERGNFRV
RGDTIEIIPVYEEYTVRIEMWGDEIERVLCLHPVTGNLLSEQRGVLIFPA
SHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIEL
MEQLGFCSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQ
IGSMHAGDFSRKKALVENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATP
GKYELSKSDGVVEQIIRPTGLVDPKITVKPIKGQIDDLLEEIRKRKLLSE
RVLVTTLTKRMAEELTDFLSEAGVNVSYLHSDIDTLHRVELLTSLRMGRI
DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSFIQTIGRAARHVS
GEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSDIT
EVLSRPSRKIDCTILDSLPDPKIDGKQIKSHIKSLEAKMYMAAESLMFEE
AAELRDEIQSLKEKFLKPRGSGGKIRQ
>TW475 uvrC, excinuclease ABC subunit C
MYPPRRIEIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRR
ISYMLSISKKVGWTCVADDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFL
AVTIGEQVPRLLITRRKIQYATHFGPYPKVFHLRETVSLLHKIFQIRTCS
PTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQKRIKNLMAFLEGQS
SSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDETVSA
DFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQ
VYDKLSLPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERR
LLETVKDNALSELERHRLRRSSDYTERHRSLFELQKYLNLNSLPVRIECF
DISHLSGTNTSGSMVVFENGEPKKSAYRHFNIHIDQNNDTASMFSLICRR
LRSLESVAQDSPDYPHLMIIDGGKPQLSAAVGALQEVGLKIPVFALSKRL
EELWSPGVKTSLILPPNSESLFLLQKIRDESHRFALKQQTRRREAYLTSE
LFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISALPGFGVKTAEKIKEC
AEAFSLK
>TW665 xseA, exodeoxyribonuclease VII large subunit
MDMQADEMYRQDPLGSCGNPRQVSHITGRLSSLLGELPATWIEGEVTQLS
PRRIGVFLTLKDMNESKHLEFFLPFDAFKDEVEVGNRVKIHGKLEFWATS
GQIKVKGFEIQSVGIGELIERIARLRVQLALEGLYEHKRPLPFIPKLIGL
VTGQNSDAEKDVVTNVLLRWPAAKFCTIYASMQGASCVSETISAIQKLDA
NNDVDVIIVARGGGSFHDLIGFSDEQMIRAVFAIKTPLISAIGHEADRPI
LDEVADLRASTPTDAAKRVVPDIADEKRLIKSAMSFLKKSYEPVIDKIKC
DTLSWSQAFSNPFETFIAPRRREIDLFYQQMLTVVWANFSKTETEIAAIK
KHLLAISPQNTLVRGYAMIEDETGRIISSADKLSAGDTVTLRLHDGLVRA
EITQ
>TW666 xseB, probable exodeoxyribonuclease VII small subunit
MFALGGIVYLENNDNVGDGVNEESVHSNNAHTNNKSVHTNGQASAVTGGN
CASYEEARDRLQEILRKLQEPSQSLEASLKLWEEGRLLVGYCEEVLQDAM
KRLNYGDTTNPEDASLKESEA
>TW756 xthA1, exodeoxyribonuclease III
MRIATWNVNSIKTRLSQVLHWLTENEIDILALQEIKCRTNAFPAEVFMEH
GYFCAAHGLGGREGVAIVSKSEPQDITTDVEGIPGYDDRNTGKQDKSDVQ
ARIIAATVGGVRLYSVYVPNGRDVHSPHYLYKLDWLEGFATHIRGVINTE
PNLVIAGDFNIVLFDSDSNDPRVQTDTDVFRTPHERQAFYNLLDLGLRDL
VRPTEPEGFTFWDYRAGRFQKNEGLRIDHILGTDPIANSVRFAKIHHEQR
KGDEGKTPSDHVPVMIELR
>TW323 xthA1, exodeoxyribonuclease III
MRVGTWNVNSIRARLERVLAWLKNECIDVAALQETKVRTGDFPVDAFRDA
GYYSEAHGLRGFEGVAIVSRFPIRRVTVNIPRAPGFLSDRWGTDIPQEAR
AISATTGGIRLYSLYVPNGREVGSPHFEYKLAWLKALASHVRTVLRRTPG
IPLMLVGDFNIVTCEQDTADPDFQLPNDITCSGPEREAFQAILDTGMFDL
IRPFAPIGFTSWSYQRQRFQNNQGLRIDFMLGSDSVQRRTIWGEIDRVQR
RHLFGLTPSDHAPLVSVIDPPRRTFRRDD