Gene list
Applied filters:
COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome 1
Number of genes found: 151
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Vibrio parahaemolyticus RIMD 2210633, O3:K6 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
VP0011 | chromosomal DNA replication initiator DnaA | chromosome 1 | CDS | 7680 | 1407 | + | 0.497512 | |
VP0012 | DNA polymerase III, beta chain | chromosome 1 | CDS | 9150 | 1101 | + | 0.488647 | |
VP0013 | RecF protein | chromosome 1 | CDS | 10260 | 1080 | + | 0.453704 | |
VP0014 | DNA gyrase, subunit B | chromosome 1 | CDS | 11353 | 2418 | + | 0.479735 | |
VP0041 | ATP-dependent DNA helicase Rep | chromosome 1 | CDS | 47155 | 2016 | + | 0.473214 | |
VP0057 | hypothetical protein | chromosome 1 | CDS | 65314 | 1353 | - | 0.478197 | |
VP0103 | conserved hypothetical protein | chromosome 1 | CDS | 109950 | 762 | - | 0.5 | |
VP0107 | DNA polymerase I | chromosome 1 | CDS | 113147 | 2796 | + | 0.484979 | |
VP0145 | MutT/nudix family protein | chromosome 1 | CDS | 155171 | 570 | - | 0.485965 | |
VP0157 | ATP-dependent DNA helicase RecG | chromosome 1 | CDS | 168535 | 2082 | - | 0.504803 | |
VP0167 | hypothetical protein | chromosome 1 | CDS | 179218 | 765 | - | 0.452288 | |
VP0184 | DNA repair protein RadC | chromosome 1 | CDS | 197245 | 675 | + | 0.471111 | |
VP0189 | formamidopyrimidine-DNA glycosylase | chromosome 1 | CDS | 200912 | 810 | + | 0.475309 | |
VP0196 | conserved hypothetical protein | chromosome 1 | CDS | 206439 | 717 | + | 0.429568 | |
VP0208 | putative integral membrane protein | chromosome 1 | CDS | 218339 | 1107 | + | 0.29178 | |
VP0253 | primosomal protein N' | chromosome 1 | CDS | 264267 | 2205 | - | 0.4839 | |
VP0288 | ATP-dependent RNA helicase DbpA | chromosome 1 | CDS | 283987 | 1380 | + | 0.480435 | |
VP0380 | putative integrase | chromosome 1 | CDS | 381054 | 1368 | + | 0.418129 | |
VP0394 | haemagglutinin associated protein | chromosome 1 | CDS | 392721 | 666 | + | 0.429429 | |
VP0405 | DNA primase | chromosome 1 | CDS | 405947 | 1761 | - | 0.458262 | |
VP0426 | MutT/nudix family protein | chromosome 1 | CDS | 430134 | 651 | + | 0.457757 | |
VP0430 | topoisomerase IV, subunit B | chromosome 1 | CDS | 432981 | 1881 | + | 0.487507 | |
VP0431 | DNA topoisomerase IV | chromosome 1 | CDS | 434865 | 2286 | + | 0.484689 | |
VP0448 | hypothetical protein | chromosome 1 | CDS | 448735 | 366 | - | 0.418033 | |
VP0468 | mutator MutT protein | chromosome 1 | CDS | 473012 | 399 | + | 0.41604 | |
VP0498 | endonuclease IV | chromosome 1 | CDS | 514090 | 888 | + | 0.449324 | |
VP0500 | uracil-DNA glycosylase | chromosome 1 | CDS | 515261 | 681 | + | 0.474303 | |
VP0505 | ATP-dependent RNA helicase SrmB | chromosome 1 | CDS | 520166 | 1224 | - | 0.490196 | |
VP0509 | integrase/recombinase XerD | chromosome 1 | CDS | 524638 | 918 | + | 0.496732 | |
VP0511 | single-stranded-DNA-specific exonuclease RecJ | chromosome 1 | CDS | 526449 | 1740 | + | 0.490805 | |
VP0518 | DNA mismatch repair protein MutH | chromosome 1 | CDS | 535008 | 681 | - | 0.480176 | |
VP0520 | MutT/nudix family protein | chromosome 1 | CDS | 536307 | 525 | + | 0.441905 | |
VP0542 | hypothetical protein | chromosome 1 | CDS | 559452 | 333 | + | 0.42042 | |
VP0568 | conserved hypothetical protein | chromosome 1 | CDS | 591062 | 915 | - | 0.453552 | |
VP0614 | conserved hypothetical protein | chromosome 1 | CDS | 639562 | 225 | + | 0.408889 | |
VP0615 | exodeoxyribonuclease VII, large subunit | chromosome 1 | CDS | 639808 | 1332 | - | 0.471471 | |
VP0638 | putative resolvase | chromosome 1 | CDS | 669568 | 651 | + | 0.490015 | |
VP0642 | putative ribonuclease HI | chromosome 1 | CDS | 672008 | 498 | + | 0.493976 | |
VP0643 | hypothetical protein | chromosome 1 | CDS | 672556 | 1800 | - | 0.463889 | |
VP0648 | DNA repair protein RecN | chromosome 1 | CDS | 676920 | 1665 | - | 0.463063 | |
VP0688 | exodeoxyribonuclease, small subunit | chromosome 1 | CDS | 720852 | 243 | - | 0.45679 | |
VP0697 | exodeoxyribonuclease IX | chromosome 1 | CDS | 729410 | 783 | - | 0.481481 | |
VP0725 | DNA polymerase III, delta subunit | chromosome 1 | CDS | 759734 | 1020 | - | 0.452941 | |
VP0728 | conserved hypothetical protein | chromosome 1 | CDS | 764202 | 471 | + | 0.441614 | |
VP0800 | DNA ligase | chromosome 1 | CDS | 833351 | 2013 | + | 0.468455 | |
VP0838 | SeqA protein | chromosome 1 | CDS | 868399 | 543 | + | 0.427256 | |
VP0865 | ATP-dependent helicase, DinG family | chromosome 1 | CDS | 898070 | 1911 | + | 0.470958 | |
VP0903 | RhlE | chromosome 1 | CDS | 935077 | 1236 | + | 0.487864 | |
VP0920 | DNA-binding protein HU-beta | chromosome 1 | CDS | 957872 | 273 | + | 0.443223 | |
VP0922 | conserved hypothetical protein | chromosome 1 | CDS | 960339 | 300 | + | 0.403333 | |
VP0951 | methylated-DNA-protein-cysteine methyltransferase-related protein | chromosome 1 | CDS | 992090 | 303 | - | 0.432343 | |
VP0975 | transcription-repair coupling factor | chromosome 1 | CDS | 1014846 | 3462 | - | 0.479203 | |
VP1003 | exodeoxyribonuclease III | chromosome 1 | CDS | 1050256 | 807 | - | 0.447336 | |
VP1005 | primosomal replication protein N'' | chromosome 1 | CDS | 1051317 | 546 | - | 0.46337 | |
VP1007 | ATP-dependent helicase, DinG family | chromosome 1 | CDS | 1052659 | 2076 | - | 0.459056 | |
VP1022 | DNA topoisomerase I | chromosome 1 | CDS | 1069863 | 2631 | + | 0.459901 | |
VP1048 | crossover junction endodeoxyribonuclease RuvC | chromosome 1 | CDS | 1099343 | 522 | + | 0.492337 | |
VP1051 | holliday junction DNA helicase RuvA | chromosome 1 | CDS | 1101517 | 615 | + | 0.466667 | |
VP1052 | holliday junction DNA helicase RuvB | chromosome 1 | CDS | 1102153 | 1005 | + | 0.472637 | |
VP1071 | hypothetical protein | chromosome 1 | CDS | 1121252 | 1137 | + | 0.391381 | |
VP1072 | putative helicase | chromosome 1 | CDS | 1122580 | 1824 | + | 0.39693 | |
VP1075 | hypothetical protein | chromosome 1 | CDS | 1125582 | 630 | + | 0.422222 | |
VP1077 | integrase, phage family | chromosome 1 | CDS | 1127706 | 1239 | + | 0.454399 | |
VP1080 | hypothetical protein | chromosome 1 | CDS | 1132416 | 1419 | + | 0.460183 | |
VP1083 | putative ATP-dependent DNA helicase | chromosome 1 | CDS | 1135576 | 3420 | + | 0.422515 | |
VP1107 | conserved hypothetical protein | chromosome 1 | CDS | 1166412 | 1350 | + | 0.494074 | |
VP1179 | DNA-3-methyladenine glycosidase I | chromosome 1 | CDS | 1237873 | 567 | + | 0.451499 | |
VP1214 | helicase-related protein | chromosome 1 | CDS | 1273742 | 1752 | - | 0.47032 | |
VP1259 | putative ATP-dependent helicase | chromosome 1 | CDS | 1331538 | 2355 | + | 0.484501 | |
VP1294 | integration host factor, alpha subunit | chromosome 1 | CDS | 1374557 | 297 | + | 0.430976 | |
VP1301 | exodeoxyribonuclease I | chromosome 1 | CDS | 1380502 | 1422 | - | 0.468354 | |
VP1353 | hypothetical protein | chromosome 1 | CDS | 1436164 | 660 | + | 0.439394 | |
VP1400 | hypothetical protein | chromosome 1 | CDS | 1502624 | 2061 | + | 0.422125 | |
VP1436 | hypothetical protein | chromosome 1 | CDS | 1542193 | 729 | - | 0.445816 | |
VP1442 | conserved hypothetical protein | chromosome 1 | CDS | 1550626 | 531 | + | 0.483992 | |
VP1453 | ATP-dependent helicase HrpA | chromosome 1 | CDS | 1562168 | 3987 | + | 0.475796 | |
VP1477 | DNA ligase | chromosome 1 | CDS | 1588897 | 843 | + | 0.47331 | |
VP1484 | hypothetical protein | chromosome 1 | CDS | 1596903 | 345 | + | 0.434783 | |
VP1487 | putative MutT/nudix family protein | chromosome 1 | CDS | 1600165 | 420 | + | 0.421429 | |
VP1551 | bacteriophage f237 ORF1 | chromosome 1 | CDS | 1659416 | 1209 | + | 0.488834 | |
VP1641 | MutT/nudix family protein | chromosome 1 | CDS | 1755287 | 1425 | - | 0.455439 | |
VP1724 | putative DNA polymerase III, epsilon subunit | chromosome 1 | CDS | 1838259 | 747 | - | 0.464525 | |
VP1787 | putative transposase | chromosome 1 | CDS | 1900885 | 852 | - | 0.473005 | |
VP1788 | putative transposase | chromosome 1 | CDS | 1901751 | 285 | - | 0.470175 | |
VP1796 | hypothetical protein | chromosome 1 | CDS | 1906333 | 846 | - | 0.377069 | |
VP1825 | putative CBS domain containing protein | chromosome 1 | CDS | 1925696 | 771 | - | 0.399481 | |
VP1829 | RelB protein/Vco27A protein | chromosome 1 | CDS | 1928666 | 285 | + | 0.417544 | |
VP1842 | RelB protein | chromosome 1 | CDS | 1935447 | 354 | + | 0.423729 | |
VP1865 | site-specific recombinase IntIA | chromosome 1 | CDS | 1948281 | 963 | + | 0.42783 | |
VP1878 | MutT/nudix family protein | chromosome 1 | CDS | 1961432 | 600 | + | 0.44 | |
VP1903 | putative DNA polymerase III, epsilon subunit | chromosome 1 | CDS | 1986707 | 732 | + | 0.474044 | |
VP1932 | DNA gyrase, subunit A | chromosome 1 | CDS | 2016922 | 2637 | - | 0.471369 | |
VP1944 | excinuclease ABC, subunit C | chromosome 1 | CDS | 2035634 | 1833 | - | 0.454992 | |
VP1946 | DNA polymerase II | chromosome 1 | CDS | 2038612 | 2364 | + | 0.453046 | |
VP1985 | hypothetical protein | chromosome 1 | CDS | 2079712 | 1245 | - | 0.462651 | |
VP2029 | integration host factor, beta subunit | chromosome 1 | CDS | 2126683 | 282 | - | 0.450355 | |
VP2034 | hypothetical protein | chromosome 1 | CDS | 2132072 | 693 | + | 0.458874 | |
VP2035 | hypothetical protein | chromosome 1 | CDS | 2132769 | 1404 | + | 0.462963 | |
VP2036 | putative DNA polymerase III alpha chain | chromosome 1 | CDS | 2134179 | 3075 | + | 0.461138 | |
VP2047 | putative deoxyribonuclease | chromosome 1 | CDS | 2148368 | 768 | - | 0.429688 | |
VP2048 | DNA polymerase III, delta prime subunit | chromosome 1 | CDS | 2149126 | 963 | - | 0.449637 | |
VP2100 | excinuclease ABC, subunit B | chromosome 1 | CDS | 2207590 | 2031 | - | 0.468242 | |
VP2108 | endonuclease III | chromosome 1 | CDS | 2216865 | 642 | + | 0.419003 | |
VP2114 | ribonuclease T | chromosome 1 | CDS | 2219979 | 645 | + | 0.435659 | |
VP2131 | hypothetical protein | chromosome 1 | CDS | 2240007 | 1338 | + | 0.411809 | |
VP2136 | putative pore-forming cytotoxin integrase | chromosome 1 | CDS | 2246231 | 1113 | + | 0.428571 | |
VP2149 | DNA topoisomerase III | chromosome 1 | CDS | 2258903 | 1965 | - | 0.474809 | |
VP2177 | recombination protein RecR | chromosome 1 | CDS | 2287435 | 600 | - | 0.485 | |
VP2179 | DNA polymerase III, subunits gamma and tau | chromosome 1 | CDS | 2288476 | 2136 | - | 0.480805 | |
VP2292 | DNA polymerase III, epsilon subunit | chromosome 1 | CDS | 2402894 | 723 | - | 0.46473 | |
VP2293 | ribonuclease HI | chromosome 1 | CDS | 2403675 | 465 | + | 0.503226 | |
VP2303 | DNA polymerase III, alpha subunit | chromosome 1 | CDS | 2412463 | 3480 | - | 0.483333 | |
VP2304 | ribonuclease HII | chromosome 1 | CDS | 2416025 | 636 | - | 0.477987 | |
VP2339 | conserved hypothetical protein | chromosome 1 | CDS | 2451243 | 744 | - | 0.436828 | |
VP2340 | putative ATP-dependent DNA helicase RecQ | chromosome 1 | CDS | 2452565 | 1965 | + | 0.464631 | |
VP2342 | DNA-damage-inducible protein P | chromosome 1 | CDS | 2454531 | 1065 | - | 0.450704 | |
VP2373 | exodeoxyribonuclease V, 67 kDa subunit | chromosome 1 | CDS | 2481388 | 2148 | - | 0.480447 | |
VP2374 | exodeoxyribonuclease V, 135 kDa subunit | chromosome 1 | CDS | 2483535 | 3684 | - | 0.487785 | |
VP2375 | exodeoxyribonuclease V, 125 kDa subunit | chromosome 1 | CDS | 2487537 | 3492 | - | 0.482531 | |
VP2439 | putative hydrolase | chromosome 1 | CDS | 2560355 | 774 | - | 0.44832 | |
VP2442 | DNA polymerase III, psi subunit | chromosome 1 | CDS | 2563629 | 399 | - | 0.438596 | |
VP2498 | ATP-dependent helicase HrpB | chromosome 1 | CDS | 2638039 | 2469 | - | 0.480761 | |
VP2550 | RecA protein | chromosome 1 | CDS | 2693309 | 1044 | - | 0.464559 | |
VP2552 | DNA mismatch repair protein MutS | chromosome 1 | CDS | 2695120 | 2562 | + | 0.480094 | |
VP2570 | DNA repair protein RecO | chromosome 1 | CDS | 2716482 | 732 | - | 0.486339 | |
VP2609 | extracellular deoxyribonuclease precursor | chromosome 1 | CDS | 2753426 | 696 | + | 0.498563 | |
VP2613 | conserved hypothetical protein | chromosome 1 | CDS | 2756668 | 426 | + | 0.460094 | |
VP2624 | hypothetical protein | chromosome 1 | CDS | 2765426 | 1029 | - | 0.462585 | |
VP2626 | A/G-specific adenine glycosylase | chromosome 1 | CDS | 2767389 | 1077 | + | 0.46611 | |
VP2645 | DNA polymerase III, chi subunit | chromosome 1 | CDS | 2797543 | 450 | + | 0.457778 | |
VP2682 | RNA polymerase-associated protein HepA | chromosome 1 | CDS | 2829447 | 2910 | - | 0.491065 | |
VP2709 | single-strand binding protein | chromosome 1 | CDS | 2864817 | 531 | - | 0.491525 | |
VP2712 | excinuclease ABC, subunit A | chromosome 1 | CDS | 2867538 | 2823 | + | 0.478569 | |
VP2735 | replicative DNA helicase | chromosome 1 | CDS | 2900736 | 1401 | - | 0.488936 | |
VP2739 | primosomal replication protein N | chromosome 1 | CDS | 2904026 | 303 | - | 0.452145 | |
VP2742 | DNA adenine methylase | chromosome 1 | CDS | 2905743 | 840 | - | 0.467857 | |
VP2819 | DNA mismatch repair protein MutL | chromosome 1 | CDS | 2982292 | 2010 | - | 0.478607 | |
VP2877 | putative DNA polymerase III, epsilon subunit | chromosome 1 | CDS | 3048802 | 630 | + | 0.48254 | |
VP2885 | factor-for-inversion stimulation protein | chromosome 1 | CDS | 3056404 | 297 | + | 0.410774 | |
VP2909 | hypothetical protein | chromosome 1 | CDS | 3097104 | 1605 | - | 0.350779 | |
VP2910 | hypothetical protein | chromosome 1 | CDS | 3098708 | 1272 | - | 0.404088 | |
VP2911 | DNA-binding protein HU-2 | chromosome 1 | CDS | 3100212 | 276 | - | 0.445652 | |
VP2915 | conserved hypothetical protein | chromosome 1 | CDS | 3103510 | 573 | + | 0.481675 | |
VP2919 | MutT/nudix family | chromosome 1 | CDS | 3107034 | 783 | - | 0.471264 | |
VP2957 | conserved hypothetical protein | chromosome 1 | CDS | 3160972 | 600 | + | 0.468333 | |
VP2981 | integrase/recombinase XerC | chromosome 1 | CDS | 3180809 | 933 | - | 0.519828 | |
VP3002 | ATP-dependent RNA helicase RhlB | chromosome 1 | CDS | 3204822 | 1314 | + | 0.493912 | |
VP3007 | ATP-dependent DNA helicase RecQ | chromosome 1 | CDS | 3209122 | 1836 | - | 0.500545 | |
VP3013 | DNA helicase II | chromosome 1 | CDS | 3216340 | 2175 | - | 0.497011 | |
VP3038 | DNA topoisomerase I-related protein | chromosome 1 | CDS | 3245416 | 570 | - | 0.47193 | |
VP3040 | Smf protein | chromosome 1 | CDS | 3246546 | 1113 | - | 0.48248 |