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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: pMP118

Number of genes found: 21

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# Lactobacillus salivarius subsp. salivarius UCC118, UCC118

>LSL_1780 Transposase ISLasa9b, IS200-IS605 family
MKKMSDLEYHYGLKMRIYPSTNQKKIIKINGNIARTVYNKMVAIDQELYK
LKQVKLPIDIVKERIKELKSRKNARNLSNHYQYMQDKNIDSLAKANAIQN
YQKAWKMFRKVHSSGTPKFHKKSYRLSYQTNAQYGKDAKMDVYSASVKFL
DKNHISLPKLGRLRVSGSHRRIIDNKDDIRIGTVTISKDTADRYFVSMQL
GSDTPFVKKLAKTNSQVGVDLNTENFLTDSFGKVVANPRYYRTIKGKIAK
AQKVLSRRQRRAKKEKRSLRDSKNYQKQRVLVAKLHDRVRNQRDNFLNHV
TTALINNHDLVVVENLRSKNMLKNHALAISISDVGWRSFLQKLDYKANLY
NRTVISVNPKNTTQTCYACGFIMGTNGTDKLNLRDREWTCPNCHEHHIRD
WNAAKNILAKGLDKLEKPKNLAKAK
>LSL_1874 Transposase ISLasa4v, ISL3 family
MDNNIKLLLGITDPNLTIDPKYQYTSYIEEKIIKNSKTLLCHLYLSYPMY
CPNCKALMLHNGTKVANNVHLSSAGKKLVLSIRKQKYLCPECKKTATAKF
KDTNYHDHFSNAVKAKLVRDLSLSRPMCEIAADSFTSSNTIIRSLESVEN
NFKVNRNWLPSHLSLDDFKSGKRFSSSGMSMCLINAVNHRIIDIIPERNN
KFLRNYFIQYSYKARLSVMTITVDLYAPYRSLIKKLFPNAFIIADKFHVV
AQAYTAMNKIRTRVMKEYGAGTHEYRALKRFWKLLLKNQDNVDYHRYYPR
INFKYAELSDSEVLDRLSDMSSELKTAYEYYQLLLQMYRKNSCQSLNLLI
DTSSWNLPPEMRQALKTIKKHKAEIENSFVLPRLTNGPIEGINNHIKVIK
RIAYGYNNFKHFRLRILLSLKNNVIFFST
>LSL_1830 Type II restriction-modification system methylation subunit
MAKSIEEKVEEHYKDRLKELGITYYGKTQASQLNESIANALKEAPSKSGG
SGNNYPDIMLMLKSRKLNRYIPVMIEAKGGKNKLEKLDKEGNIEQVKLWD
SDSKEGAKNPHKKGDPNFNSIEKYAVNGAYHYAKIILEDEHCNYDEVIFI
GVNGTKLTKNNEVADPEHKVYYLSRSNKMQPKYVKDLNKSWDLMKADNLE
SLFDVVDKLTLSEEELETLTSKTEDQLEKAVKKIHQEIYDNASLRNVLTT
NEKLYLFSGLIMAGLKTDGIVQLKLEKLDGNIDDDDNDGTTILKKISSFL
KKRNSNNYKVKMVMDLLSPIFTKKVLWENNNGESLIKHIFTDIHSEVIPL
LESDLQLDFTGKILNSLNDWVSIENDKQNDVVLTPRYVTKLMVKLTRTDM
NSYVWDTAMGSGGFLVSAMDEMFKDAKEKIQDKKKLEEKIEHIKKEQLLG
VELLGNIYILAVLNMILMGDGASKMKNGDSHKIYDDLEFPANVFLLNPPY
SADGKGFNFVAEAFSKMQKGYGAILIQENAGSGTGLPYTKKILDYNTLVA
SIHMPNDLFNGKSSVQTAIYVFKVNEPHNVKKAVTFIDFSKDGYSRQNRK
KSSQEVNLRDTDNAKARYQEVIDHVLGNIPDTKYYTEANGKLIKDRITLE
GNDWTFSQHVVIDPMPTEEDFKKTVADYLSWKVSQLMQDGVDNG
>LSL_1826 Hypothetical protein
MCIRSHILTVVVEIQLYGLDPDNKVGTLHKHNYDIYDSNNDLSSELKIGN
LNRVIGYDKLCTDILRELKDTDNREQVNTLLVRITNPENSGKKRAYLFTH
DAYYDNEITPEMRKEAAANPDYMIQVNDWQRINFKYYEQRQLRNQAVDSI
SDYLEDTYNLTLQMQYEVDIEAQTHAKSWQTKKNINKATLDAMEKSSLKQ
DFKDLELDNDVDIDKFKKLEPEIRETVKFLPQSTNDEKPILRFRKLGNHH
ATGLFVPFNNTLAVDFRSYESKSEYRPSGIGIESFIHEYGHFLDYNANNS
ELSKNGQTRQYANRFKHILSMQDDFKEILHQTQHEIQNRVANGLKMSSHF
INYYTTPTEVYARAFEVYSSEIGLQNSLLKDKSEYKNSLIYSFFTDNTIK
KIVNYFDNKFPDYRQRVQEYNQTLEERTQYEQKIKINSKSVENAEQQDLN
LDLNESDNDKKLETEKQELDNSAKKLVDELKKDTNKKQDKTEEKSKTKDN
NEKEVITKKGKKYLKLVLNSISRENLELLSQKIKDYTESTGLRPTGYFSS
EALAEFATKVDLQNKLENSDIGDKLNILGTEFTVKKQEMQSIMSSSGRAV
GVELSYIDAEGNKQNVILPSDDGNLAAQYLVSAFSINIIEPKVNKEILED
NKSIQNKKDNNSKKNEKQESSSKEDAPEKKYESYKTKRAKEKLARLEKEF
SEATKNIYDHYKQANGQPMNDKRGGNAFFNKANKLDEKAKKLSTEIEKQK
ELIEKLEWQDENKALGLNKQGGLIMSVDNIPRIKAEIEKAKKGESHYNQA
TIRKYKKELSKLEEIAKLAETPLSPGAKKLVDDNIIKQWKKKPSIYFVNH
LRGVALELTEKGNFQVSQKYTPKDDESKAAVEEILEKQNKIDKASNIQNS
KVEKEHKNQKETPKQGKQLQVINKLKTFIEEKINNTLSTSQETLQLFSDM
QKFNNYSARNQLLILAQRPNATGVRTFDQFKKDGSHVKKGEKGIKILKPV
EHEVFQRADKSVVDVFKATASEKEAIKNGNLKTQKKLYYKLQTVFDVSQT
NVPKEEYGRYTNQKDNVLENTDLKTINQGLREVATDLGIKIYTYGKDDAA
TIRREPDRIGYYIEDESIIIQPQSMTDKEENETLLRGITSRLETKISDDF
SKELWGKVVLKDYDQVQDNYLNNLKQLSTKEQVSIFEKVAKLNTRFSTML
ADKVREVSTGTIPFNQGRGFIAPSVAKER
>LSL_1788 Transposase ISLasa15, IS3 family
MLKRIGLSKSGYYRHKFKGLSKSKERQLKIKDLIMEIWEESQHLYGAPKI
TAKLRKMGIQISERTVGKYMKELKIRAKYCKPFTVTTRDSNLNNKLKNTL
DEQFNPEAPDTIWCIDTTYIPTKEGFVYLTSIMDLFSRRIISWDLSTTLE
TTNIISLINKVKATRKSNPKIIHSDRGSQFTSKEYCEITAGITRSYSKKA
YPWDNACIESFHAIIKRECLNEYNISSYNKARRLVFSYIDGFYNTVRIHS
HCGYISPLEFEQTYFDKVQKVNKAA
>LSL_1787 Transposase ISLasa14, IS3 family
MPKKTYTDEFKTDAVNYYYDSGLSINTTAKKLGVSISALRKWIKLSKKDG
SVITRGSGNYSSDKDKEIVRLKRQLRDAEGAIEVLKKAISILG
>LSL_1957 Transposase ISLasa2b, IS1223 family
MDQIRVDQQNLPKKERYGIGELLKTIDLKRPTYYDERKRIINKNDKYADV
KVVIKEIAEKGKWRGSYIYGYRRIMPLLEKAGYHMAEATLRRLMNELGVQ
PAMYNRRKNNHYSSYKGTVGKVADNLLNQTFDATSPFTVLHTDVSQVRLG
DSTWAYMSVILDQATKEVLAASVSQSSNKLLIMDTLSQLEDNLPNNFNPI
IHSDQGWHYQLDYYREKIDSLGLIQSMSRKGNCLDNAPMESFFHLFKVES
QPEIKKCKNISQFTQFFNKYVNWYNNDRISNKTKNMSPVDYRTHVLAA
>LSL_1818 Hypothetical membrane associated protein
MRIFDRFKKNKAERLEDNFQVRYIFSPDFDLENNKEIEKLYTKVVTAQDQ
REELTLADTAPFATFAMIEELFNELRTYITETGTSIQFEDFAIWAYDKNK
KYKLGKSGDDGNPFEFLTLSDFELDYEYQNLSKVIFESIFNDPENEDFDY
DEKLKICNEIKETYMLSTKKTEREIARLPSMDEAEKGTVILNVPMFSMQQ
SVKDQVPQYDPLTHTFSQTQTPQAEKAVETVSKKDNLEQQNQNVTKKETT
NVNKKENITPPRNMNNARNSNNKLGRRTQHQQIQQRADSEELYARKQGSI
AIPQFEIQNVDNVEVGQKGYVEYKENEFKKNLNQRLKTIGIRINNENAKT
ILERRNSYQNLTKKAANKYISEHKSILDNLEQKVREEMLAKSNSEIETMK
ARLLEKQETDLAIAEQNYNQKVAAIKADYQDKIKAQSAEIRSTYEDKAYQ
KYNIEYKQKKNELNRASQKIWQENSKKFDIKLREDIAQLKMDSADTLSKL
FKSYQDELEEYHNRILTENLNAKKIMIAEQQADNESKKVAAPYDEIQQKN
KALANLNADYQAVLAERDSLLKSKQDLKTDNETLRRRNDQLADAQSKQVD
LVSKKVDSMDTKQPDYFQQWMQIQMAQQVQSQSKQQDEKQEDVSDKNENI
NLKNSVKLARRLAASAFALLILLGSGAGYFTYHTVQTNNAKLASLDSQLS
EAKKVSNKKSNVLTQDQVNKKAIQALHDNNLTALNKYSSETFYSLDKAII
EGKKDEVVKAIKSMDENNLNLQDRYRASLTESLLRQANQTSLADKVQEQN
KWLKN
>LSL_1758c Modification subunit
MDKDLEERLAAKDSYITIHDFYVLMAFYQSISQKVLRKFDKDGSILEVQK
KYEESRETVQDAQFVIAPQDTYYHHYQMYKANKFEYVELVKSLYNIEEKN
PKLKNIFQDVRGSTSSLPSETAFEKVDSRNEVSFEENLEIIKRSSGAKDN
YDYTSKNIRKLITKLVGSKKEGVSIYDPALGTASLLLGINQAALKENRYY
GQDISTQAIKTAIMNVIVNDVDDDKFEFKNENTLANNWEFGKVDIVVSDP
PINMKWNVDRNLSQDRRYRDYGEMPNKADWGFILDGIDKLSDNGMMVVSV
VQGTLFRGAKEYNIRRKLLEDGKIRAVIQLPGNTKLSTTIATCLLVFRKS
SEDKDVFFINASQEYEKKGLENILTEANVDKIVDTFNEKKEVQRFSHMAN
YEEIEKNDFNLSVARYVNQYKFKEKLDYQEEIKNLEKLDEKLSQTDATLK
NLMGDLGLMEINDQK
>LSL_1743 Transposase ISLasa12, IS607 family
MEQTVNIKVKLNILEPNVGMKFSKTMEQYRLACNYVSEYLFNNNFPLNKN
EVQKVIYNTIREKFNLKSQMAISCIRSVIARYKTVKTQMARRPYNYQDQN
TGEWYREVRDLTWLHKPISFNRPQVDLQRNRDWSYLSSGQLSINTLDGRV
KVDPICRGFNQYLDGTWKFGLAKLLKSSGKWYLHISATKEVTDFDKQAVK
HVVGIDRGLRFLVTSYDEQGKTAFFDGQAIMRKRAKYQKLRAILQAKGTK
SAKRRLKKLSGRENRWISDVNHCLSKTLVQKYGANTLFVLENLNGVSFER
TDLPKALRNQNKSWAFYQLEQFLTYKAHLNNSEVVEVSAKYTSQRCPKCG
VIKKDNRNHEKHEYHCDNCGYRSNDDRIGAMNIQLLGTQYISGQEQPKFE
LATNA
>LSL_1958 Transposase ISLasa1b, IS1223 family
MTKYTQKFKLDLIQEYLDTGCSQRCLENKYSLPKDTLKKWWTVYNLKGPE
GLKLRHFKRKFTVDFKLRVINYYLNNDVSMSKVAASHNLLCSQISIWLKL
FMEGGSEALKPKKKGKPSKMSKMTKKDARKILKKESDEIAALKSELRQVK
MERDILKKSLTLFGPSKPRRKQ
>LSL_1779 Transposase ISLasa8b, IS200-IS605 family
MTNKIKDAIYTKRYVYNLHFHLIWCTKYRNKTFTNEKLSNEMKDILQRVA
DDNEIVIEKMEVMPDHVHMLISFPPRKSAVDVIKALKGRSAFLFLQTHPE
IRQKQYWGGHLWSSSYYLGSLGSMSKDVVERYINDQKYNAYKK
>LSL_1762 Hypothetical protein
MIFRDEILIKYSQGQRFPLEEYNIVSKKGLLLEFGEDFNYKLKKFKDANL
PLFHVDESRLMRKYFKAKEANLALYRIIDDENFDDKYLLFKETLNRYIDF
SEFIDAKNDAKWLSEILRRCRVVEQSIENIMLYSIGKTGKILREDYIKRT
NTRLKNLPIDENFKQEFIRILDEIKDSVYEKNEIDILLRKEEETLIDLNV
LQVELYVKDAIQDSQDEQTKRTAKEIGRSINRIRKKYDEYTDIRKEYLQL
INIYRSKNPELISDLEKISDGQIILPAAVEKEYTKMTDKYNNLPKLNKDE
NKIVRYFMLRHKIKIPGEGIKQGYSLSASLEKFKRVKDYEVKKLLLEYLI
LRVKLIEEVIGFKQQNIRDMYFRAIEIISKYDVYSYNKNSSIELYDIGFL
TNNSIGNNNINLGKDVKILKYKLESIIAKSKQKDLIRGILNELVKIYKKT
ETPTMDILNILGKIVARESTFYYGEMHNSSNLWKQEFINFLYKVNYYYVG
NKLSNDFSKADKTILNKNLEFLVFIDEVVKPGLETGILSKEERIKVHRKK
LIKKVKLIYGKSKKSKSIYGENKRVNKDKLGKYFYGIRRNLSAIDTLSGY
GNLQRSERTEKLLSKRLNISSKKVEMIRKILEKYPQRDSVDFKREIESLP
IPKDMQERIIFFEVNKKDIREIKDAFEIKNKLVIK
>LSL_1758b Hypothetical protein
MKLNELVKIESGINSVRVKDQNHTLYTIEDVNYDLGHGEDYQHDKASGKS
ITARGDIVINTVSNLASVVHSRNAGKMLNQIFLRLNILDENTLDPWYLCY
LLNKSEYIRYQEAAIMDGSVIRKLTKANLEDLEINLPEVVDQKKMGKAYK
EIMKKYTLAMEKAELERDLYLQMLGEKDLNNREAV
>LSL_1893 Sorbitol operon transcription regulator
MNVLNYQLFKILTTNDSITVDRLVSELQVSKKTLQKYITSLNEELGEIAE
IQEKNQKYYLKVEDYARLAKFQTHYLKTTLDFNNPLKRQAYILLMLIKSK
GYMLLDDLSEYLMVSKGTINRDIKEIKLLLKDYDTTIRSVSNNGVMLESK
ADCQIAFILRNFVCDYYDLGEKLAIEEKQEITKLVRKYNKSKTVRNLIIR
HLKILNFLHEHGRKISTTPDCYYELTSSEVNNEIISILKKYLHSEEITEA
EKSFLLIPLNINYSNRNTERINKRLMWIDELFAEIFSQVKENISLDIDYN
RVFEQIKYHSIFMINRSATYMRNDDLFSREIVEKYPVAVDLAIMTVNLLE
SKLNIKISDKELGYLALYYQMEIEDEKRGNPQYHKVAIVGEVSKSIQNLI
ISRLNETFQGTTEADIFKSSESFKKSSERYLIVFSTLPLESKDVTTPIVR
IQSIFKNDELVSKVTLSQVMAGISSQQVKFRIQRFEERISYLKAVENLID
TEISTGELLPGFKLDWKKREEKMSNVFQNGIAIPHMVDKSNNSRILLTVG
ILSKAVKYQGKEVRIIFLIGIPQNLNSKLSKILSRVYDLIFMISGYDEIY
NNLLEYDMDLPLTQITEGI
>LSL_1781 dps, Non-specific DNA-binding protein / Iron-binding ferritin-like antioxidant protein / Ferroxidase
MTENKATQERTPQERLQEEQEHKEHVHHTKINAAAIADHLLGNMHTLHVK
LHQYHWYVKGANFFTLHEKFEELYNENEKWFDKLAERLITSGHKPASTTV
EFEKYSILSEDAVNKYSKAEDMVENIIEDFRSTRDLTIRAIRLAQDEGDD
ALEDTLIAFKNDLDKNIWMLQAFIGKEALEDDDALDEDGD
>LSL_1774 himA, DNA-binding protein HU
MNKNELVEAIAEKMGATKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNF
EVRERAARKGRNPQTGKEIEIPASKVPAFKPGKGLKDAVNK
>LSL_1824 topA, Topoisomerase-like protein
MVDYLILTEKPSAAENFSTALGGKNGIFDGKTFKIVHARGHLLTLAEPEN
QVDPSLKEKYKSWDPETIPWNLSNLSWRRIPIRNAGSILNSIKDAAQKAK
AIVIATDNDPSGEGELLAWEIIEYIGWNGSVLREYHDDETPKSIRKAMSN
LKDVSDKNQDGEYLKGLVRNKWDFSSMQLTRLATSYAREAGFNVKVANQG
RLKSVIISLVKERLDEIKNYVKKPYYEAKFKDENGHIYARKIKKDDEEQL
NLVRHKSKEDAQNELSMYSSSPIGDVVRKTTTQAPPALLDLASLDAILSK
RNYPSNQVKTVYQKLYEKGYVSYPRTEDKFITQEQFKEFSENADKIAALV
GVNTNLLTHREARSSHVKSSATHGANRPGSNIPENLAEFNQIFDKERDCE
CAKDIYTVLARCTLAILAEDYVYEEVKASLLEYPAFETKFNIPKKLNYRK
IYNPTAIKKEKDVGTNAVPFVFEGANSKPKVPTKKWLYAKLRNYGKYGVG
TGATQQNTMSEITNSKANAYLLTDKQGKLDLTDQGMIAAVLCEKTYIASP
NITIRLFEMMDEVGNFKREPQDTIDTVTKVIIHDKPIFKENVTKLVDVLG
KPKKSNNYITAKFNDEDIKFKNSWGKYTFTKEEIDLLSKGEPISFTYKGS
TVTGRLKKQIYEGHEYWGFSPDEKKSINENNYTFAEINGEKIKFKNKWGS
HIFSESEIQALIRGETITFDYNGTEKSGKLEKQKYQGHEYWGFKSK
>LSL_1758 xerC, DNA integration/recombination/inversion protein
MPRKSTKLFHKYYKEWIELYKKGAVRHATLIKYELAHKHVKELCPDLHLH
QIDRKNYQLLLNKFAENHKRETTLDFHHHLKPCLVDAYEDGIIRVNPTRK
AIIKGNQKRKKKQKFLNMDELQALLSELNLSSEVNWDWFIYLISKTGLRF
AEALALTPADFDYENQQININKSWNYKFKDYGFQPTKNKSSNRKIFVDNS
TLKAFKKLIKEKDPDQPIFVNQDQKIFNSTVNSRLATLYRHANIPTISIH
GLRHTHASLLLFQGVSVLSVSRRLGHANITTTQETYLHIIKELETKDNRK
ILKHLKEL
>LSL_1797 xerC, Integrase
MQKEVANKKIDELLHELPYYMNDFVIVKTADEYSPNTILEYLKNFHQFLI
WLIENHYVNENKTSDIAPESLDKLTVRTATEYKSYLLRRKKQNKKALDKN
GHKEESTETLSKVTIQRNITALKVIFKFLSRSANNSQEKPFLTHDVMQSI
DNVADKQTLQARADALEEKLFLDDETDEYLQYIKEVYPQSLSTQAKKFYN
RDVERDLAINALMLGSGLRLSEVVNINIEDLDFENNRVAVLRKGNKKDSV
RIAAFAMEYLANYRDIRASRYRADKYEKAFFLAISRGGSKRITGSAIEKM
VSKYSKGFKVRVTPHKLRHTLATRLYKQTNNLVLTAQQLGHSSTATTTLY
THIDNDETTDALNSL
>LSL_1833 xerC, DNA integration/recombination/inversion protein
MATRTSTKLFYKYYRNWIDLYKKGAVRHATLIKYELAYKHVRRLCPDLHM
NQIDRKSYQTLLNKFAETHERETTLDFHHHLKASLTDAYEDGLIKVDPTR
KAIIKGTQKRKKKKKFLNKNELEALIHELNLSPEINWDWFIYLVSKTGLR
FAEALALTPSDFDYKNKQIIVNKSWNYKFKNYGFQPTKNKSSNRKVFVDD
NTLKAFRKLNKRKDPNQPIFVSQGQKIFNSTVNSRVETLCKHANIPTISI
HGLRHTHASLLLFQGVSVLSVSQRLGHANVTTTQETYLHIIQELETKDNR
KILKYLKTL