Gene list
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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome
Number of genes found: 88
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Thermus thermophilus HB27, HB27 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | TTC1931 | DNA topoisomerase I | RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; | chromosome | CDS | 1840330 | 2475 | + | 0.721616 |
NA | TTC1222 | DNA gyrase subunit B | RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; | chromosome | CDS | 1184740 | 1923 | + | 0.672907 |
NA | TTC1157 | putative methyltransferase | SubName: Full=Putative methyltransferase; | chromosome | CDS | 1123478 | 1008 | - | 0.742063 |
NA | TTC0572 | probable transposase | SubName: Full=Probable transposase; | chromosome | CDS | 556245 | 624 | + | 0.668269 |
NA | TTC1788 | ribonuclease HII | RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; | chromosome | CDS | 1695850 | 612 | + | 0.720588 |
NA | TTC1199 | putative methylated-DNA-protein-cysteine methyltransferase | SubName: Full=Putative methylated-DNA-protein-cysteine methyltransferase; EC=2.1.1.63; | chromosome | CDS | 1162330 | 444 | - | 0.736486 |
NA | TTC0982 | endonuclease V | RecName: Full=Endonuclease V; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; | chromosome | CDS | 965652 | 681 | + | 0.757709 |
NA | TTC1895 | heat resistant RNA dependent ATPase | SubName: Full=Heat resistant RNA dependent ATPase; | chromosome | CDS | 1802867 | 1554 | + | 0.725225 |
NA | TTC1859 | bis(5'-nucleosyl)-tetraphosphatase(asymmetrical) | SubName: Full=Bis(5-nucleosyl)-tetraphosphatase (Asymmetrical); EC=3.6.1.17; | chromosome | CDS | 1764535 | 465 | - | 0.705376 |
NA | TTC1876 | DNA integration/recombination/invertion protein | SubName: Full=DNA integration/recombination/invertion protein; | chromosome | CDS | 1778579 | 1179 | - | 0.696353 |
NA | TTC1584 | putative CoA pyrophosphatase/phosphohydrolase | SubName: Full=Putative CoA pyrophosphatase/phosphohydrolase; | chromosome | CDS | 1500433 | 471 | + | 0.698514 |
NA | TTC1075 | excinuclease ABC subunit A | RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; | chromosome | CDS | 1043081 | 2859 | + | 0.682756 |
NA | TTC1741 | single-strand DNA binding protein (SSB) | RecName: Full=Single-stranded DNA-binding protein; | chromosome | CDS | 1653827 | 792 | + | 0.69697 |
NA | TTC0533 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 514876 | 2937 | + | 0.695948 |
NA | TTC0610 | DNA integration/recombination/invertion protein | SubName: Full=DNA integration/recombination/invertion protein; | chromosome | CDS | 592188 | 942 | - | 0.701699 |
NA | TTC0665 | transposase | SubName: Full=Transposase; | chromosome | CDS | 651891 | 1176 | + | 0.696429 |
NA | TTC1806 | DNA polymerase III alpha subunit | SubName: Full=DNA polymerase III alpha subunit; EC=2.7.7.7; | chromosome | CDS | 1712094 | 6204 | + | 0.682463 |
NA | TTC0990 | DNA gyrase subunit A | RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; | chromosome | CDS | 971723 | 2418 | + | 0.682796 |
NA | TTC1169 | probable DNA-binding protein | SubName: Full=Probable DNA-binding protein; SubName: Full=Transposase; | chromosome | CDS | 1135672 | 954 | + | 0.686583 |
NA | TTC0041 | methyltransferase | SubName: Full=Methyltransferase; | chromosome | CDS | 38022 | 927 | + | 0.660194 |
NA | TTC0571 | probable transposase | SubName: Full=Probable transposase; | chromosome | CDS | 555835 | 516 | + | 0.682171 |
NA | TTC1720 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 1636619 | 786 | - | 0.759542 |
NA | TTC1588 | DNA polymerase III holoenzyme tau subunit | SubName: Full=DNA polymerase III holoenzyme tau subunit; EC=2.7.7.7; | chromosome | CDS | 1502604 | 1590 | + | 0.720755 |
NA | TTC0176 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 159510 | 237 | + | 0.620253 |
NA | TTC1174 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1141900 | 1587 | - | 0.646503 |
NA | TTC0959 | DNA mismatch repair enzyme (predicted ATPase) | RecName: Full=DNA mismatch repair protein MutL; | chromosome | CDS | 937414 | 1638 | - | 0.730769 |
NA | TTC1609 | DNA polymerase III, beta chain | RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; | chromosome | CDS | 1524642 | 1128 | + | 0.715426 |
NA | TTC0160 | ADP-ribose pyrophosphatase | SubName: Full=ADP-ribose pyrophosphatase; EC=3.6.1.13; | chromosome | CDS | 142512 | 513 | - | 0.660819 |
NA | TTC1170 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1137482 | 225 | - | 0.657778 |
NA | TTC0559 | methyltransferase | SubName: Full=Methyltransferase; EC=2.1.1.-; | chromosome | CDS | 545110 | 558 | + | 0.72043 |
NA | TTC1432 | transposase | SubName: Full=Transposase; | chromosome | CDS | 1356338 | 1158 | - | 0.602763 |
NA | TTC0461 | DNA polymerase III epsilon chain-like protein | SubName: Full=DNA polymerase III epsilon chain-like protein; | chromosome | CDS | 447153 | 1875 | - | 0.729067 |
NA | TTC0690 | DNA polymerase I | RecName: Full=DNA polymerase; EC=2.7.7.7; | chromosome | CDS | 671122 | 2505 | + | 0.67984 |
NA | TTC0784 | uracil-DNA glycosylase | SubName: Full=Uracil-DNA glycosylase; | chromosome | CDS | 767637 | 660 | + | 0.719697 |
NA | TTC1191 | ribonuclease H | RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; | chromosome | CDS | 1155420 | 501 | + | 0.690619 |
NA | TTC0577 | probable transposase | SubName: Full=Probable transposase; | chromosome | CDS | 561059 | 624 | - | 0.668269 |
NA | TTC1005 | serine protease-like protein | SubName: Full=Serine protease-like protein; | chromosome | CDS | 984175 | 762 | + | 0.724409 |
NA | TTC0664 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 651303 | 468 | + | 0.611111 |
NA | TTC0638 | probable ATP-dependent DNA helicase | SubName: Full=Probable ATP-dependent DNA helicase; | chromosome | CDS | 625498 | 2574 | - | 0.741259 |
NA | TTC1220 | modification methylase | SubName: Full=Modification methylase; | chromosome | CDS | 1183034 | 1215 | + | 0.714403 |
NA | TTC1478 | yqgf-Family protein | RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; | chromosome | CDS | 1400580 | 408 | - | 0.70098 |
NA | TTC1161 | putative DNA repair and genetic recombination protein | RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; | chromosome | CDS | 1127602 | 1587 | + | 0.747952 |
NA | TTC0732 | NAD-dependent DNA ligase | RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; | chromosome | CDS | 715856 | 2031 | - | 0.66519 |
NA | TTC1880 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1786343 | 1233 | + | 0.515815 |
NA | TTC1654 | DNA-3-methyladenine glycosylase II | SubName: Full=DNA-3-methyladenine glycosylase II; EC=3.2.2.21; | chromosome | CDS | 1569179 | 558 | - | 0.725806 |
NA | TTC0005 | hypothetical conserved protein | RecName: Full=UPF0102 protein TT_C0005; | chromosome | CDS | 3973 | 339 | + | 0.672566 |
NA | TTC0206 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 192404 | 744 | + | 0.717742 |
NA | TTC0445 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 432592 | 1587 | - | 0.640832 |
NA | TTC1509 | putative DNA polymerase III subunit | SubName: Full=Putative DNA polymerase III subunit; | chromosome | CDS | 1433281 | 807 | - | 0.742255 |
NA | TTC1519 | bis(5'-nucleosyl)-tetraphosphatase(asymmetrical) | SubName: Full=Bis(5-nucleosyl)-tetraphosphatase (Asymmetrical); EC=3.6.1.17; | chromosome | CDS | 1442115 | 381 | - | 0.703412 |
NA | TTC1892 | endonuclease III | RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; | chromosome | CDS | 1799785 | 663 | + | 0.701357 |
NA | TTC1230 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; | chromosome | CDS | 1191943 | 1959 | - | 0.717713 |
NA | TTC1531 | excinuclease ABC subunit B | RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; | chromosome | CDS | 1452220 | 2007 | - | 0.666168 |
NA | TTC0918 | protein kinase-like protein | SubName: Full=Protein kinase-like protein; | chromosome | CDS | 897267 | 783 | + | 0.713921 |
NA | TTC1942 | primosomal protein N' | SubName: Full=Primosomal protein N; | chromosome | CDS | 1849794 | 2112 | + | 0.732481 |
NA | TTC1535 | A/G-specific adenine DNA glycosylase | SubName: Full=A/G-specific adenine DNA glycosylase; EC=3.2.2.-; | chromosome | CDS | 1460265 | 978 | - | 0.718814 |
NA | TTC0984 | putative DNA binding protein | SubName: Full=Putative DNA binding protein; | chromosome | CDS | 967096 | 294 | + | 0.629252 |
NA | TTC1523 | ATPase | SubName: Full=ATPase; | chromosome | CDS | 1444538 | 1266 | + | 0.71643 |
NA | TTC0290 | transposase | SubName: Full=Transposase; | chromosome | CDS | 279959 | 516 | - | 0.676357 |
NA | TTC0896 | DNA primase | RecName: Full=DNA primase; EC=2.7.7.-; | chromosome | CDS | 874715 | 1773 | + | 0.71348 |
NA | TTC1182 | excinuclease ABC subunit C | RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; | chromosome | CDS | 1148519 | 1893 | + | 0.696778 |
NA | TTC0922 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 902448 | 2901 | - | 0.744571 |
NA | TTC0985 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 967412 | 843 | - | 0.739027 |
NA | TTC0258 | hypothetical conserved protein | SubName: Full=Hypothetical conserved protein; | chromosome | CDS | 248633 | 876 | - | 0.711187 |
NA | TTC0482 | endonuclease IV | RecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; | chromosome | CDS | 470956 | 813 | - | 0.719557 |
NA | TTC0289 | transposase | SubName: Full=Transposase; | chromosome | CDS | 279441 | 624 | - | 0.666667 |
NA | TTC0578 | probable transposase | SubName: Full=Probable transposase; | chromosome | CDS | 561577 | 516 | - | 0.682171 |
NA | TTC0366 | uracil-DNA glycosylase | SubName: Full=Uracil-DNA glycosylase; | chromosome | CDS | 352109 | 618 | - | 0.666667 |
comE | TTC1602 | competence protein/comEA-related protein | SubName: Full=Competence protein/comEA-related protein; | chromosome | CDS | 1516644 | 228 | + | 0.719298 |
dnaA | TTC1608 | chromosomal replication initiator protein dnaA | RecName: Full=Chromosomal replication initiator protein DnaA; | chromosome | CDS | 1523000 | 1341 | + | 0.673378 |
dnaB | TTC1106 | dnaB replication fork helicase | SubName: Full=DnaB replication fork helicase; EC=3.6.1.-; | chromosome | CDS | 1077043 | 1335 | - | 0.686142 |
dprA | TTC1873 | competence protein dprA | SubName: Full=Competence protein dprA; | chromosome | CDS | 1775457 | 1005 | - | 0.723383 |
ecJ | TTC0803 | single-stranded DNA specific exonuclease RecJ | SubName: Full=Single-stranded DNA specific exonuclease RecJ; | chromosome | CDS | 782782 | 2001 | + | 0.728636 |
mutM | TTC1454 | formamidopyrimidine-DNA glycosylase mutM | RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; | chromosome | CDS | 1372708 | 804 | + | 0.746269 |
mutS | TTC0960 | DNA mismatch repair protein mutS | RecName: Full=DNA mismatch repair protein MutS; | chromosome | CDS | 939048 | 2436 | - | 0.69376 |
mutS | TTC1282 | DNA mismatch repair protein mutS | RecName: Full=Endonuclease MutS2; EC=3.1.-.-; | chromosome | CDS | 1235685 | 2235 | - | 0.703803 |
mutT | TTC1576 | mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) | SubName: Full=Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase); EC=3.6.1.-; | chromosome | CDS | 1495550 | 468 | - | 0.730769 |
mutT | TTC0511 | phosphohydrolase (mutT/nudix family protein) | SubName: Full=Phosphohydrolase (MutT/nudix family protein); | chromosome | CDS | 495418 | 549 | - | 0.690346 |
recA | TTC1466 | recA protein | RecName: Full=Protein RecA; AltName: Full=Recombinase A; | chromosome | CDS | 1389891 | 1023 | - | 0.703812 |
recF | TTC1721 | recF protein | RecName: Full=DNA replication and repair protein RecF; | chromosome | CDS | 1637362 | 1032 | - | 0.748062 |
recG | TTC0902 | DNA helicase recG | SubName: Full=DNA helicase recG; EC=3.6.1.-; | chromosome | CDS | 882252 | 2313 | + | 0.695633 |
recR | TTC1236 | recombination protein recR | RecName: Full=Recombination protein RecR; | chromosome | CDS | 1198960 | 585 | + | 0.733333 |
ruvA | TTC1696 | holliday junction DNA helicase ruvA | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; | chromosome | CDS | 1609248 | 576 | - | 0.708333 |
ruvB | TTC0038 | holliday junction DNA helicase ruvB | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; | chromosome | CDS | 35266 | 1011 | - | 0.69634 |
ruvC | TTC0725 | crossover junction endodeoxyribonuclease ruvC | RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; | chromosome | CDS | 710141 | 501 | + | 0.714571 |
sbcD | TTC0923 | putative exonuclease sbcD | SubName: Full=Putative exonuclease sbcD; | chromosome | CDS | 905329 | 1119 | - | 0.722967 |
tatD | TTC1084 | sec-independent protein tatD | SubName: Full=Sec-independent protein tatD; EC=3.1.21.-; | chromosome | CDS | 1053614 | 756 | + | 0.715608 |
uvrD | TTC1062 | DNA helicase uvrD | SubName: Full=DNA helicase uvrD; | chromosome | CDS | 1031047 | 2079 | - | 0.713324 |