Gene list
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COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome 1
Number of genes found: 115
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# Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808 >RSP_0901 N-6 Adenine-specific DNA methylase MRIIGGQRRGLKLAEVGDGDARAHLRPTSDRVREAIFNLLLNGGYGNPVA GAHVLDLFAGTGALGLEALSRGAQRASFVENGTAALALLRRNIALMRAEA ATAVERRDATQAPPVPATPVTLCFLDPPYGKGLGERALAAHAGWLAPGAL VLWEENIAPVPPEGFTQLDQRRYGDTLVTILEAP >RSP_0675 putative TatD-related deoxyribonuclease MTSQTPPQIVDSHCHLDFPDFDGEHEALIARARAAGVTRMVTICTRLRHE PRVRAIAEAHEGVFYAAGTHPMSAAEEPMATVEELVALAAHPKFVGIGET GLDYHYTPDSAPVQQESLRIHIEAARRTGLPLIIHARDADADMARILTEE HRAGAYGCVMHCFSSGPELAQAALDLGFYLSMSGIAAFPKSAELRAIFAA APLERILLETDSPYLAPPPFRGKRNEPAYTAHTAAKGAEVFGLSLADFAA ATSANFDRLFAKAAA >RSP_1339 Formamidopyrimidine-DNA glycolase MPELPEVETVRRGLEPAMAGRLIAEARVNRADLRWPFPPRMAERLTGQRV LRLRRRSKYILADLSGGQSLLIHLGMSGRMLVSGAQLGEFFHDHPAPSRH DHVVLEMEGGARITFNDARRFGAMDLVATEAAEAHPLLAVLGPEPLGNAF DGAYLAARLEGRRTPIKAALLDQRIVAGLGNIYVCEVLFRAGLAPGRLAG SLSRAEAEGLVPLIREVLLEAIEAGGSSLRDYRQADGELGYFQHTFRVYG REGLPCVTPGCSGTVGRIVQSGRSSFHCPLCQR >RSP_2123 Radical SAM domain protein MSSRDPSLSPTLRLRARGALANETGRFETERREAFDDGWDLPEEERLLRT EVRIERPRSALTYNRSPDLPFDRSVNPYRGCEHGCIYCFARPSHAYLNLS PGLDFETRLIARPGIAAVLERELRARSYRAAPIALGTNTDPYQPIEATHR LMREILEVLAAFRHPVAITTKGTLIERDLDLLAPMAAEGLLRVGLSVTTL DPNLSRRLEPRAPSPARRLQTIRRLAEAGVPVRAMIAPVIPGLTDSELDR LLAATAGAGAVAASWIVLRLPREVAPLLRAWAEEHYPDRAAKMLARIREI HGGRDYDPAFGKRMRGEGIWADLIARRFRLAAARHGLDRAQPPLRSDLFR PPPRPGDQLSLL >RSP_1001 hypothetical protein MDGLDWNAALAALAWQVDLGATEAILDAPVNRYELGDAQPVPKAAAAAVA ATAAPDPVAAADPVEEARRAAAAAPTLEALREAMAAYDHCDLKRGARNTV FSDGHPAARLMLIGEAPGREEDAAGRPFVGRAGQLLDRMFAAIGLSRTSP DAETALYITNVMPWRPPQNRDPSAEEVAMMTPFLARHVELAAPDLIVVTG NTACAALLGRTGITRLRGRWAEAWGRPVMPMCHPAYLLRNPEAKREAWAD LLEVKARLTR >RSP_2232 putative uracil-DNA glycosylase MAAWRAEARRLAQAGVPAESVVWRVGAGEADLFADLPALPAGPARQIRLS REAVGSLETALCHADPERFGRAYGLLLRLADGTLRWGDRSDPALRKLLAQ EKMVRREIHKMHAFVRFRELPSEGPRRAFAAWFEPDHPVEEAATPFFARR FGDMDWAIVTPEVTARFVAGQLDFALTEERTAPPADGTEELWRTYYANIF NPARLMVKAMQSEMPKRYWKNLPEAELIPGLIRGAAERAAEMQAAAPTEP PARTAAVARQRAAAAGGPAAAGDGSAPGTLAEAKTAAEGCRRCGLWANAT QVVFGEGPATARMMIVGEQPGDREDLAGRPFVGPAGQLFDEEAAAAGLDR GSVYVTNAVKHFKFAPRGKRRIHQKPDAGEVTACRWWLDLERDLVRPRLI VAMGATALASLTGSGAGILKRRGSVERLDDGTPVFVTVHPSYILRLPDEA ARVEERRRFRDDLQAARQLLERLD >RSP_1627 Putative N-6 adenine-specific DNA methylase MKQVPPAAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRR RFRPRLEVMNDRNGEIINLFRILQRHYPQLLEIMRFQICSRREFDRLRVT DPATLTDLERAARFLYLQRLSFGGKPNGSFGISPGNGPLFSLARLEPLLD AARTRLDGVVFECLDWAELIPRYDTAETLFYLDPPYFGGENDYGRGIFDR AQFARIAEILGGLKGAFLLSINDTPEIRALFGRFHLEPVRLSYSVAASGS TEAQELLVSNRERIATLL >RSP_1485 ATP-dependent RNA helicase MTQTDIAAPLAAALAAKGYESLTPVQEAVLAEGVAGRDALVSAQTGSGKT VAFGIAIADQILQGADRLLFADTPIALAIAPTRELALQVARELGWLYGEA GAHIATCVGGMDYRTERRALDRGAHIVVGTPGRLRDHIERGSLDLSGLRA VVLDEADEMLDLGFREDLEFILGSAPEERRTLMFSATVPKEIEALAKEFQ QDAVRIQTAGERKQHADIEYRALTVSARDKEHAIFNVLRFYEAPSAIVFC KTRLAVNHLLARMGNRGFQVVALSGELSQQERTHALQALRDGRARVCIAT DVAARGIDLPGLELVIHADLPTNSETLLHRSGRTGRAGSKGVSVLIAAPS EVRKAQRLLTGAKLVADWGKPPSADEVQERDDARLLEHPVLGQDLSDEMP LAEKLLERFGPAQMSAAFVRLWREGRSAPEVLQDLAPPEPSQRAPRERGE FGEAVWYAVAVGHTGRAEARWLLPQDLRGGRRDQERDRRHPRPAGADLRP DREGGRWEVRRRARDRGGRGHGAPRRRAHAGAPRTRAAQAVRRARPPRPG RGAPAREGALPAQALALRRGRSGRGPWRLDPGRPPRAGAPAAPRGRRAVR EA >RSP_1466 Putative mutY, A/G-specific adenine glycosylase MRDTDESPDAGDISARLLAWYDRHARVMPWRVGPAERRAGHRPDPYRVWL SEIMLQQTTVAAVRDYFRRFTDRWPDVEALAAAPDADVMAEWAGLGYYAR ARNLLKGARAVVALHGGRFPETRDGLLSLPGVGPYTAAAVASIAFDEPAT VVDGNVERVVSRLFAVETPLPAAKPELTRLAATLTPQVRPGDHAQAMMDL GATICTPRKPVCSLCPLRPDCEGHRAGLEAELPRKAPKAEKPVREGRLWI AVRADGAVLLETRPERGMLGGMLGWPGTDWDRSGGPAGAPLEADWRETGV EVRHTFTHFHLRLEVLVAQVAEAALPARGSFVPRADFRPAALPTLMRKGW SVAAAAIRHPTGEERLA >RSP_0419 conserved hypothetical protein MDLAAEAGGDDKTRVRPAATVILLRDGPSGPEVLMGMRGASAAFMPSKFV FPGGAVDEADARVPLAGLPAPVCLRRLGDEGPALAAAAIRELWEETGLPL GVKGAWTAPDGWKGFAGRGLRPDASGLRFVFRAITPPGRPRRFDARFFVA EAARLAADPDDFSAACDELSHLQWLPLAEARRLDLPFITEVVLAEVSALA QGRDAGPGVPFFDNSGPVPTFRRLE >RSP_1527 Helicase, UvrD/Rep family MSGLRDEASERQVQAADPRASTWLSANAGSGKTRVLTDRVARLLLDGVEP QRILCLTYTKAAASEMQNRLFRRLGEWAMLDDAELRRALDALGVAAVGHE VLAQARRLFARAIETPGGLRIQTIHSFCATLLRRFPLEAGVSPQFTELDD RAARLLREEIVEELADRIAPEVVADLARAYTGEDFGALAEEVARNAAGLL PPLDAPACRALYGVEGDEAALLAQVFLGGEEEWMPALIAALEAGSANDQK AAAKLRLLSFASPTTATLAGLEGVLLTGASAKEPYTAKLGSFPTKATRGA LGPLADRLDALMRRVEAARPVRCCLLAAERARLIHAFAGVFLPLYQARKA ARGWLDFDDLIQRAKGLLTDPSVAQWVLFRLDGGIDHILVDEAQDTSPDQ WKVIELLAQEFTSGRGAREVERTIFVVGDKKQSIYSFQGADVAAFDRMRA EFGERLAGARRRLEELDLLHSFRSSPAILRLVDLTFDEPRRQALGGEVRH IAFRGDMPGRAELWPLVEAAEEPEPENWFDPVDLVSDEHHAARLARQVAT RIRAMIEAGVQIPHPGGFRPVAAGDFLILVQRRSDIFGEIIRACKEARLP IAGADRLKLGAELAVRDLSALLAFLATPEDDLSLAAVLRSPLFGWSEGEL FDLAHGREGYLWRRLYDREAAHPGTVAILRDLRDQADFLRPFDLIERALT RHDGRRRLLARLGEEAEDGIDELLSQALAYERTDVPSLTGFLTWLQTDEV EVKRQMEAAGGRIRVMTVHGSKGLEAPIVILPDTADRKPRERDELFTLEG GARVWKTPAAESPPQIAAAREARRARDAAENLRLLYVAMTRAQCWLIAAA AGKLETGGAWHDLIRQGMEAAGAERRDDGALVLDEGLWPPAAPQASAAAA AARPVLPGWAWAPATEPPAAPEVLSPSALGGAKALPGDAMPTEEALAHGS AVHRLLEHLPLHPPEGWEAAARGLLPDLPDVAPVLAEARAVLSAEHLAEA LVPHALLEVAVTAEVAGRRLSGTIDRLVVEPDRVLAVDYKTNRVVPDRPE EVPEGILRQMGAYAEALAQIYPGRTIETAILWTQAARLMRLPRDIVRSAL VRATTT >RSP_0405 probable single-stranded DNA-specific exonuclease MTGPAARAFLGVEASATGRRWVGPSPEEDRLAEAMAQTTRLPLALCRTLV RRGVPASDAESFLAPALRDLLPDPLTLKDMAPAAARLLQAVARRERIAIF ADYDVDGGSSAALLIVWLRALGRSATLYIPDRIDEGYGPNVPAMQALAEA HDLILCVDCGTLSHEPIAAAKGADVVVLDHHLGAETLPPALAVVNPNRQD EDGALGHLCAASVVFLLLVEANRRLRAEGVQGPDLMAMLDLVALATVADV APLTGVNRALVRQGLKVMARRERPGLVALADVARMKTAPNSYALGFLLGP RVNAGGRIGQADLGARLLSTEDPREAQALAERLDQLNTERREIEARVREE ALAQAEARGISGPLVWAAGEGWHPGVVGIVAARLKEATNRPAVVIGFENG IGKGSGRSIAGVDLGASIHRVAHEGLLLKGGGHRMAAGLTVEEGRLEAAM ERLGELLARQGAAEAGPADLRLDGLLMPSAATAEFVEQIDSAGPYGAGAA APRFALADQRVTCRRMGDKHMRLTIGGAEGRLEAVAFGCFDGPLGPLLEG GGAGRFHLAGRLEIDTWGGSARVQMRLEDAARA >RSP_2143 DNA photolyase, Cryptochrome 1 apoprotein (Blue light photoreceptor) MMADAPLILWFRRDLRLADNPMLAEAAATGRPLIPLFILDPETEALGAAP KWRLGLGVEAFARALEGLGSRLVLRRGPALAVLEALVAETGAAGVHWSRL WEPDWRARDEGVKAGLRQAGIEAASHAGHTIFEPREVETGQGGFYRVYTP FWKAVKDRPVAASSPPPARLLSPAEWPVSERLACWDLGRAMHRGAAVVAP HLAVGEAAAAERLTRFLSGPLDRYAAERDRPDAPVTSRLSENLTYGEISA RSLWHAGMRARAEGRAGAEKFLQELAWREFGWHLLYHTPEIARRNWRGDW DAFPWRGDNPDAERWRRGMTGEPFVDAAMRELFVTGTMHNRARLIAGSYL TKHLLTDWRVGQAWFEDCLIDWDPASNALGWQWVAGSGPDASPYFRIFNP ATQAEKFDPESAYRQRFLAEIARRPGPEALAFFEAVPRSWGLRPDRCYPR PVVGLAEGRERALAAYGRRNN >RSP_1651 hypothetical protein MRGQKPKVSNVIPMKGDLAAPVPEAPGWMSAEGREVWDRLAPVLVAKKRL EPAFEDPFAVYCEAVADVIRFTGDIAAFGSWYEVETRNGRQQKKRAVWGQ RQDAIAVMNQLAARFGLTPVDEARVRVTGQGDLFDEILKTLDGAD >RSP_6018 hypothetical protein MAMFPVHIRETSPRRLAALRHTGSFEEIGATFGQICQILEERSLLSQAGC MIGVYWDNPLLAPPGALHSHAGIDLPEAMEIAPPLEELRLSGGRHAVLQY TGPYSGLARAYRYFFSQWLPEAREIQAEGPLIEIYRNAAMETPSDQLVTE ICVPLL >RSP_1346 DNA gyrase, subunit B MAEAARVPEEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVV DNGIDEALAGHATAVTVKIHADSSVSVRDNGRGIPVDMHASEGVSAAEVI MTQLHAGGKFDQNSYKVSGGLHGVGVSVVNALSDWLELRIWRNGREHFAR FENGETVEHLRVVRDAPGEKGTEVRFLASAKTNRPDGTFSNLDYSFKTLE ARLRELAFLNSGVRILLEDERPAEPLHSELFYEGGVREFVRYLDRSKSPV MPEPIFITGERGGIGVEVAMWWNDSYHETVLPFTNNIPQRDGGTHLAGFR GALTRTITKYAQDSGIARREKVDFTGDDAREGLTCVLSVKVPDPKFSSQT KDKLVSSEVRPAVENLVNEKLAEWFEENPAIAKSIVGKIVEAALAREAAR KAREMTRRKTAMDVASLPGKLADCQEKDPALSELFIVEGDSAGGSAKQGR ARKNQAVLPLRGKILNVERARFDRMLSSETVGTLITALGAGIGRDEFDIA KLRYHKIIIMTDADVDGAHIRTLLLTFFFRQMPAIIEGGFLYIAQPPLYK VARGKSEVYLKDQAALDDYLIHQGIEGAILRLATGEEIAGQDLLRVIEGA RQFRRVLDGFPTHYPRNILEQAALSGAFDPGRADDDLQLVADRVAERLDL TAAEYERGWKGRITQDHGIRLSRVLRGVEELRTLDGAVLRSGEARRLSQV SGQTRDVYAPGARLVRKDREQPIHGPIALLKAVLAEGEKGLSLQRYKGLG EMNPEQLWETTLDPEARTLLQVKVDDLAEADDIFTKLMGDVVEPRREFIQ QNALNVENLDT >RSP_1966 possible ISSod13, transposase MGEEVGVVKDLPPIHKSHPQSTPPETVARIKTLALAHPAYGCNRFEAMLA LEGIRVSSITIQKILNENGLGTKSDRWLALEQANAEKRIELTAEQAAFIE KLNPCFRERHVESSAPGELLSADTFFVGALKGIGRVYLHAVVDTFGSYAF GFLHVSKQPEAAVAVLHNDVLPFYRNLDLPVGAVLTDNGREFCGTERHPY ELYLDLNGIEHRRTRVRTPKTNGFVERFNGTILNEFFRVAMRDNFYESVE ALQADLDAWLVHYNTERPHLGYRNMGRRPVETVMSFVSQEG >RSP_0621 Possible DNA helicase MALLGFLRSRREDKTPLLERCLSVDLEVHPKTAEIFDMAAVRFGDGPAVV APKANIRQGLDRLEQALGKATHVVGHNILRHDIEHLLAARPQLLEKMAAP IDTLWLNPLAFPRNPYHHLVKHYHDGRLQAGHVNDPELDARLVFEVLENQ IAALSEIGGRSPETLIAYHYLATRMDRAEGFDAVFSEIRRARQPDRAEAF AAIRGLLAGKACGARVEPALEALSDPRAGWPMAYALAWISVAGGDSVMPP WVRAAFPQAALIVRDLRDTNCGDPACGWCAEMNDPVGALRKWFGFDGFRP QPADAHGRPLQQVIVAEAMAHQNVLGILPTGTGKSVCYQVPALSLFDKTG ALTVVISPLVALMADQVQGMERAGISSAVTVNGMLSMPERQDALDRVRLG QAAILLISPEQLRSVSVRAVLAQREVGLWVLDEAHCVSKWGHDFRPDYRY IGRFIREFSGDATPAPVLCLTATAKPEVVRDITEHFRGRLGVELGLFDGG ATRTNLTFSVLATTKESKLGDIMTTISGHLPADERSGAVIYCATRAETER IAEFLKRQGIAAEHFHAGLTPDDKQTVQERFRVGDLRVIAATNAFGMGID KPDIRLVLHADIPGSLENYLQEAGRAGRDRQPADCVLLYHSDDVERQFTL TARSRLERHEIGAILKALRRIDEHTRNSGKVVASAGEIVREEKDRAFVRD SATDDTRVKTAVSWLEEATLVSREENRVQVFPSSLLVRTLAEAEARLAGA GITQTRRRQLLGIVRHVINTPPDQGISTDELTGISGLTHRALGKAMADLE ALGIARNDLALTVSVHVGIENQSRQRLTRAVRLEEALIARMRELAPEADV GQGAPLDLAAASQVLRGEGHEEASPHILDRLLRSIERDGRDSDGGRGNIR LRKLSSKTLEVILQRSWRVVGQTASVRWGAAEKLLEVLIGKVPTGTRGKD IQVETTAGELLAALSGDAIAAAGVKDRTKLMERALLWLHEQQVMTLGKGL TVFRSAMTIHLKPGHAGFTKKDFLPLEDHYREQTLQTHVMAAYAEKGLER IEEAVRLSEDYFALDQESFLRRWMPGRGVELRRQTTGKAWKQIVEDLGNP VQQEIVADDREETNVLVLAGPGSGKTRVLVHRIAYLLRVKREDPRGILVL SYNRHAAAEIRARLRHLVGEDAARVTVSTCHALAMRLVGASFTGGTAEQH DFQDVLREAVRQINGEGLSRTEAEAQREALIQGYRWILVDEYQDIGREEY DLIAAVAGRSLEDPDQRLSLFAVGDDDQNIYAFNGASVSYIRRFEEDYRA RPKFLTENYRSTRHIVEAANQVIEPARGRMKARHPITVDKMRSLYPGGGA MARHDPVGQGRVQFLDVAADDTAQAMAAVEELVRIARLDPDFSWARCAII SRDWRRLGPVRAYAEKLGLPVEMANEKLPSLWRLREMQRFVASLNRRPAA MLTIPDMLELLNEQRSNRWIDLIAEGIADLARELGRKTMPVPDTIEWVAE WAQDIRSAQRGLLLLTAHRSKGLEFDHVVILNGGWKTLSQGEDGEAPRRL FYVAMTRARRSLAVVTHGLHPFVEADSDCEMLRRVEMPRRLDLPQPDHYQ VPDMGVVDLSYAGRLPETSPTLAAIAAAQVEDPVTIERREGKWLILDRRR RVLGRMAGGWAPPEGTDLVSGKVGAIVRWRRSDNEERFQSYLKREEWETI LPEFVFRKTAPARTV >RSP_2092 Putative uvrD/DNA Helicase II MSQIDESEAFEAAVPLSQRAMAARPRPYIDELNPAQRAAVLALDGPVLML AGAGTGKTKALTARIVHLLDSGKARPNEILAVTFTNKAAREMKDRVARLL GQVEGMPWMGTFHAISVKILRRHAELVGLKSNFTILDTDDQLRLLKQLIV AANIDEKRWPARMLAGLIDHWKNRAWTPAKVPASEASAYNNRGTELYDQY QQRLRELNATDFGDLLLHVLTIFQSHPDVLEQYRRWLRYILVDEYQDTNV AQYMWLRLLAQTHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAQVI RLEQNYRSTPHILAAASGIIAANAGRLGKTLWTERQEGEKVRLIGHWDGE EEARWIGDEVESFQRGRGGLGPFRLDDMAILVRASHQMRAFEDRFLTIGL PYRVIGGPRFYERLEIRDAMAYFRLAVSPDDDLAFERVVNQPKRGLGDKA QQEIQREARAHGTSLLEGARSLLARGGIGGKGAGQLRAFVDGMDRWHGTT LDRDHDHIRLAEQILDESGYTAMWQADKTPEAPGRLENLKELVKALEQFE NLQGFLEHVALIMENETEESVDKVTIMTLHAAKGLEFPVVFLPGWEDGLF PSQRAMDETGLKGLEEERRLAYVGITRAEQLCTISFAANRRVYGQWQSQL PSRFIDELPSAHVEVLTPPGLYGGGYGAAGMASSLEAQALRADVYDSPGW KRMQTRAGGRPMAQPRESRHVTIDLEAVSAFAEGDRVFHQKFGYGHVMGI EGDKLDIDFEKAGAKKVVARFVVAAHQADDIPF >RSP_1743 ATPase, AAA family MSDLFDREPAPPQPDAPRPLADRLRPKSLAEVIGQGKVLSPDGPLGAMLV SGSLSSLILWGPPGVGKTTIARLLAKETDLAFVQISAIFTGVPDLRKVFE AAKLRRANGQGTLLFVDEIHRFNKAQQDGFLPHMEDGTILLVGATTENPS FELNAALMSRAQVIVLDRLSLADLERLAQRAEHETGRALPLDGPAREALL EMADGDGRALLNLVEQVMAWKVKGPLDRDQLATRLMRRAAKYDKSGEEHY NLISALHKSVRGSDPDAALYWFARMLEGGEDPRFLARRITRMAVEDIGLA DPQAQGICLEAWATYERLGSPEGELALAEALVYLALSPKSNAVYTAYKAA RAAAKQTGSEPPPKHILNAPTKMMKEIGYGSGYQYDHDAEDGFSGQNYFP ESMKRPVWYLPQERGFERELKKRTDYFSKLRAKRQGG >RSP_0959 ATPase MPSGTRFRSWRPGSTRRSGLPGPSSGPPRRCPSRTSRRRGPTERRRWPWL APAAMVAPMQAVSFSDDQAEAYDRVADQLRGMGVDLANGALSVPVEGKSS VLAVVGKAGSGKTMLLASLTKALIEAGLEVVSGDWEGRKRKERRTLAILA PTNKAASVLRLRGVPATTIHRILYSPVYDPQYERIAEWLAGNGKRPEVEG LSEMALDRAKAFYEQVPSIPGALAAAGLRGSDFIKGWKRRDEPLDVGFVD EASMLDERQFDDLREIFPTLVLFGDPAQLAPVGQSGKMVFDTMGEARKLT LSRIHRQAEDNPILDLAHALADPDLSFETFEAMVERAARQDERVQVAQRV DADLMARSPVLVWRNQTRIRLITAFRAAQGAPETELLPGEPLICDGIELP LKHRKKRIDLEARGLIKGAQVIYLGPGNREGFARLHVVGAEDPQVSAASI IKIEKPGEEEPFIPSAARMGAAFLHGAAVTIHKAQGSQWEVVQVFAPDLW AAAQAGRSEAGVPLWKRLAYVAITRAEKRLVWVVRNRLALPQQPLSVEDL PRTAPKLKLQSETETP >RSP_0567 Probable Methylated-DNA-(protein)-cysteine S-methyltransferase MKGAVLTPVGRVVLIEEDGTLVRLSWSDEEAEGESPLLAEAAAQIAAYFD RRLTRFELPLALGSGRAALFHKALLAIPFGETRRYGELARGLGIPPQAVG RACGQNPLPILVPCHRVLGATGLGGFSAPGGIETKIALLRHEGALLI >RSP_0730 conserved hypothetical protein MAHENRDTARDPATATALARLIWPLRLTWAGLWAERLVRSFWPVWTILVA TLAALVFGLQDLLPLDWVRGGLALAVLGALIAAGFGLRAFRRPTRTEALS RLDASLPGRPISSMTDAQAIGSGDPWSRAIWEAHRRRMAERAAEARPVRP DLRLARRDPFALRYLALTALVIALMFGSIWRVASVTGLAGGGAEAMVGPS WEAWAQPPSYTGKPSLYLNEIDAPEITLPVGTRLQIRLYGEVGDLTVTES VSGRPAGEAPAGPAQDVEVRQTGALTIDGRGGRSWKIMALADRPPLVTAD GQMEREADGQMKLSFSARDDYGVTGGQATILLDLPAIDRRYGLAVDPEPR EPVTLDLPLPIAGNRAEFSETLVDDLAKHPFANLPVVLNLSVTDAALQEG RAEPLKVVLPGRRFFDPLAAALIEMRRDLLWNRTNGPRTAQILHAVTHAP EGLFRNERAFLRTRVLMRKLDAEAATLAPAARDEIAEQLWEIALMVEEGD LASALEALRRAQDRLDEAIRNGASQDEIEQLMQEMRQALDNYMRELAEEA QRNPDQQQAENRQTMEMSGDQLQEMLDKLQELMEQGRMAEAAELMEMMRQ LMENMQVTMGEGQGQGPGSQAMRDLSETLRDQQGLSDDAFRELQQGPNGG RPQDGRPGEGEGQEGRDGRSLAERQRELGDRLNGMQNQPLPGQGSERGEN GRRSLDDAGRAMREAERALRDGDLPGALDRQAEAMEQLREGMRELGEAMA EEQRQQNGQGEGEAFGRADPNSQRDPLGREPGETGRIGSDRNMLQGEDVY RRAQDLLDEIRRRSGDLSRPEIEREYLRRLLDMY >RSP_0838 putative DNA polymerase III, delta subunit / DNA binding MILRGAEAVRYLAKPDPSRAGLLIFGQDSMRVALKRQEAVLGLIGPEGAA EMRLTRLPASDLRRDPAALMDAMTAKGFFEGPRAVLVEEAADGLTALIGD VLKEWRPGDAQVVVTAGGLTGRSSLKKLFEAHPSAVCIGLYDDPPTREEV DTMLRQAGLGQIEPQAMAGLTALARDLDPGDVRQTVEKLALYKLGDPAPL SAADVAEMAPVSIEAGVDEVIHAVAEGRRTEVSPLVRRLEAQGVTAVALC IGAMRHFRSLHRLAAGADPGRGGFNPRQERMQRQARQWGVNRLEEAMALL VETDLTLRSASRAPAMAVMERALIRLCTVR >RSP_0946 putative DNA topoisomerase I protein MKDGCVLVEMSDGSEATVPRGLVYVTDAEPGITRRRCGRGFVFRGPDGRL LDRAERARILRLGVPPAYEKVWICPLENGHLQATGFDARGRKQYRYHPDW GSWRSQAKYALLPAFGEALPRLRRRVARDLKAEAGELAFSLAALTMLIDR TFLRVGSSAYAEENKTFGATTLLARHVKLKDGEVRLDFRAKGGKRVRQVL KDRRLHRILQEIEDLPGRNLFTWIDEEGQVRRVASHHVNDYLAEATGLAG ASAKTFRTWGGSLAAFAVARATEGKLTVKMMAEGAAERLHNTPTISRTSY IHPRILGLADLKPDERLAQLEAVQPADLPDLRSDERRMLGFLLG >RSP_0572 putative exonuclease MLDRLNLRVRILLFFAALAGGANVAVAIGLFLAYRRLDAPELLPAFEQVG LVAGLVILGLVTWIWYLFDANVALPIIRLASKLRARAHARIDGGIEEPTA RYLGDLAPAASATALTLAETRDALAESVARETSRLSSEKARLEALLSDVP VGLLLCSGDHQLVFYNGPATDLMNTAGAPGLDRNLFDYLRDGPIRHAHRR LIEAGDPDAASDILCTTVVGARVLAARMRLIGGETTKPGYVLTLRDVTSA LASYARREALLAEVFDRIRRPAANLQTLFEVLPPGSCPPPDMDRALRQEA AGLAAAVTELGARHDESRHDGWPLSLTRASDLLDGLHARMEQAGLSAEIG EAPLLLRCNGFEVIGLVATLAARVAARRTGHDFRVTLTEDGTEAMLRLVW HGEPLPVGLLEDWLGEPLEPGVPEVTGRTVLSTHTTEIWPEPAGAGASAL CLPLRTARRTGRRPRPIPRAVVYDFELLSKARYEKVAEARLEDLTYVVFD TETTGLMPSQDEIVQIAAVRIVNGRRVEAEVLDTLVNPHRPIPPSSTEVH GITDAMVAEAPDIVEVGRRFHKFAEGAVLVAHNAPFDMEFLRRAEPLIGR RFDNPILDTVLLSAVLFGQSDVHSLDALTHRLGITIPEEARHTAIGDTVA TADAFLKLLPMLQGRGFETFGAVLSEVRRHGRLLKDLNEPHLTDA >RSP_1968 Possible integrase/recombinase MTHSIQWLVGRYLTHLESLVEAKLASLLTLRQRRSQLRRFCEMPTEDGGT YGEYDFRAPRSAIIAARDQWRHKPGEADNLVKSISAMYRWAIDEAEIATE NPAVGIKKLNKGGGGAAAWTADDLKRFREAHPFGTTAHLWLTLQMFTACR IDDARKLGRSNEIDRGGTLWLEFQPGKKGSAPVSIPMLPPLLKAARAQKV QGATYLLTAAGKPFSTAESLRNRVQKWCAAAGIEGKSSHGIRKAAAELLA EAGCTQHQIMALMAHTQAKTSEIYTKGAQRRLLAADAAAALATLEW >RSP_0563 putative site-specific recombinase MSLAIPPAARDALEAWLTHQRAIEGASAHTIRAYTADVTGWLAFLAGHLG EGYGLKRLASVPHADLRAWMAHERARGLGARSLARSLSAVRQFTGWLAER EGVDATAVLSARGPKFRRKLPRPLSEADAKALLSTVAEDAAEDWIRARDL AVVTLLYGCGLRISEALGLPGTAHPLPEVLRITGKGDKERLVPSLPVARA AVARYAALCPFDLASGVLFRGARGGPLNPRLVARTMERARATLGLPPTAT PHALRHSFATHLLNAGGDLRSIQELLGHASLSTTQVYTAVDGARLMEVYA KAHPRA >RSP_2749 putative P4-family integrase MPKKAREWGALDVKRAAHPGDGANVWHAVGGVAGLLLQITPTGAKSWLLR TTVAGTRRAMGLGSYPEVGLAEARERAREAKRKIAAGVDPIEERKATRAA LAAAQRRSLTFADAADKWIKAKLSDRPEKSQKAVRATLTAYSFPEIGALT VQELTPQDVVRALNTIWTAKPDTATKMRGYLEAILSWATVSGYRTGDNPA RWAGNLKELLPAPSVVAKGRAGNFPAVPVARLADWWEELGQREGMGATAL RFAALTAARSGEVRGALWSEVDLDAALWVVPGARMKMGREHRVPLSGPAV ALLRGLPRLAGTGDLIFPGPRGGILSDMSVSAVMRRMQEDAETEAKMAGR PVSAAGWRDTRTGRPAVPHGLRSSFRDWAAEVGYDRDMAEIALAHLVGSE VERAYRRSDMLERRRAMMERWADVLAGRSGASVVEFRRA >RSP_0708 NUDIX hydrolase MRIAETVTFGGSGLDRAGRLRGDAASLARLLAGDCVLPIWRGRPLCAEEG ALGWLPPGHPVLAGAEEPIFLGLDGEAPRFAADISHWSPEAGAEAVQGGF FDPGFQSHPALPGAPGFGDLRGLMLALSPREAELAATAKALVQWHRSHRF CSTCGAPSAPSEGGWHRRCTACGAQHFPRTDPVVIMLVTHGNRALVGRSP GWPEGVYSCLAGFVEPGETIEAAVRREVMEEAGVTVGPVRYLASQPWPFP ASLMMGCHGIALTDVITLDPVELEDARWITREEMVTVMAGRHPEVRPARK GAIAHFLISNWLADRLD >RSP_1031 Endonuclease III MARQLDYRTIHEIFARLHALEAEPRGELEHVNAYTLLVAVALSAQATDAG VNKATRALFAQVTTPAQMLELGEEGLTEHIRTIGLYRNKARNVIALSRLL VDQYDGEVPSSRAALQSLPGVGRKTANVVLNMWFHQPAMAVDTHIFRVAN RTGIAPGRDVEAVERALEDHVPAPFALHAHHWLILHGRYICVARKPRCGI CPIRDLCPYEEKTA >RSP_1206 putative phosphohydrolase (mutT/nudix family protein) MPEALRRALESGGAASSDHDLNPEIVLPPDRRLRAAAVLVPVWQREGGAR VILTKRASHLAHHPGQIAFPGGKIDPTDASPEEAALREAREEIGLPAEMV EVVGRLPAHETVTGFTVIPILAEVRGRFVPVTQEDEVEEAFTVPLAHLLD LSRYRVEQRLWRGGWRRYYVVPYGPYYIWGATARILHGLARRMQG >RSP_1696 DNA topoisomerase IV, A subunit MTDTPEDPTEEPLTTSEPLRRAIGERYLTYALSTIMHRALPDARDGLKPV HRRILFAMRELRLSPTGGFRKSAKIAGDVMGNYHPHGDAAIYDAMARLAQ DFNVRYPLVDGQGNFGNIDGDNPAASRYTEARLTPIAELLMEGLAENAVD FRPNYDGTLEEPVVMPAAFPNLLANGASGIAVGMATNIPPHNLDELIEGC LALIRDPAIADDTLVSLIPGPDFPTGGVIVEPKEQILEAYRTGRGAFRLR AKWQTEDLGRGTWQIVVTEIPYQVQKSKLIERLAELIQTKKVPALADVRD ESADDVRIVLEPRARTVDPEMLMGMLFRNSDLEIRFSLNMNVLIDGRTPR VCSLKEVLRAFLDHRRNVLIRRSQHRMEKIDHRLEVLGGLIVAFLNLDRV IDIIRYDADPKRALMAESWGRRFKRANSEKDYVGPGPGPGDLSEVQAEAI LNMRLRSLRRLEEMELLAERDALLAERADLEALIGSERLQWDRIGHDLGE IRKLFGKWTVAGARRTQFAEAGEVEEVPLEAMIEREPITVICSQMGWIRA MKGHQPLDTEAKFKDGDGPRFLFHAETTDRLLLVGSNGRFYTLTGASLPG GRGMGEPVRLMVDLPNEAEIHDIFVWRPAEKLLLASSAGDGFVVPSEEVL AQTRAGKAVLSMKEGVRTAVCRPVRGDHVAVVGENRKLLVFPVSELPEMA KGKGVRLQKYKDGGLSDAITFEIARGLSWKDPAGRTRTETELAEWTAARA GAGKMAPRGFPRDNRFT >RSP_2177 hypothetical protein MRAKAQKPISSPAEAEWLDRLRLIRSRRVGPATWRRLMAEHGTAAGALAA LPGVAAAAGIEGYEVCPLPVALKEMAAARAAGAAMLWLDEPGYPPLLGQI GDAPPLLWLQGDPGLLARPMVALVGARNASSLGLRMARKLAAALGEAGYV VVSGLARGIDAEAHAAALGQGTVAVQAGGVDVIYPAENAGLAAEIAARGC RISEQPMGLVPQARHFPLRNRIVSGLARAVVVVEAAARSGSLITAREALD QGREVLAVPGHPFDPRAAGGNQLIREGATLVRHAADVIEAIGTAHPAARS PEPQPDPPRRPLYEISAVHSRILDRLGPVPVPEDQLIRDLSLPAGRVAQE LVALELEGRIQRDPGGLVSRPE >RSP_0674 Putative HolB DNA polymerase III delta prime subunit MAQDEIPEPDRVEGAPHPRETQALFGHARAEAEFLAAFSSGRLHHGWLIT GPLGVGKATLAWRIARFLLATPPADGLFAAPPPDSLAIDPDHPVARRVSA LAEGRLFLLRRAWDEKAKRLKTQITVEEVRRMKAFFALSAADGGRRVAIV DPADEMNVSAANALLKLLEEPPEGVTILLVCHQPSRLLPTIRSRCRELRL APLAPEDMARALAAAGVEADDPAALAELAGGSAGEAIRVANLEGVKLYRA LVGLLSTLPRLDRAKLVALADAASGKGAEPQFELMLTLIDLFLARLARAG TLRLLPPEAVPGEADLIARLAPDARAARLWADLAQSLGNRARRGRAVNLD PAALLMDMVLRIDETAAQLA >RSP_1400 UMUC-like DNA-repair protein MPRRTPQRKEGAPARGATVDLPQPSVPLYDPPMPALCRDCLTPFDGGTRC PACRSPRVTAHPELFSLSIAHMDCDAFYASVEKRDDPSLRDKPLIVGGGS RGVVSTCCYIARISGVRSAMPMFQALKLCPEATVVKPRIDVYAGVSRQIR AMMEDLTPAIEPLSLDEAFLDLSGTERLHGAPPAVLLARLLRRMEEELGI TGSVGLSHNKFLAKIASDLDKPRGFSVIGRAETDAFLRKKPVRIIWGVGT ATQSALERAGIRTIEDLLRWEKADLVARFGQTGERLWHLARGEDRRRVSA DHALKSVSKETTFHEDTADPEILDGHLWRLAEQVSDRAKARGLSGRTVTL KLKRTDFALVTRRHALAGPTQSADRIYREARALFDGARTAGPFRLIGVGI SDLAGAAEADLTGDLLDPNAGRRIAAERATDAIRARFGHDAIIKGRSLR >RSP_1468 Site-specific DNA-methyltransferase MATKTKTTEAPVLPLNQILAGDCIETMRSLPECSVDLIFADPPYNLQLRG DLHRPDNSRVDAVDDHWDQFSSFSVYDQFTREWLAAARRLLKPNGAIWVI GSYHNIFRVGAALQDQGFWILNDVVWRKSNPMPNFKGKRLTNAHETLIWA SKQEASKYTFNYEALKALNEGVQMRSDWVIPICTGHERLKDEQGDKAHPT QKPEALLHRVMVATTNPGDVVLDPFFGTGTTGAVAKMLGRDFIGIEREES YRRIAAERLSRVRRYDASALEVSGSKRAEPRVPFGQLVERGMLRPGEELY SMNNRHKAKVRADGTLIGNDVKGSIHQVGAALEGAPSCNGWTYWCYKREG KMIPIDILRQQIRAEMEDPRPN >RSP_1814 conserved hypothetical protein MSGEVSYYAGQTAEEAVARIYDRSGRPVAARRWRGVSGEIDLIAREGAEV IFIEVKKSTSHAAAAARLSRRQMDRIYGAASEFLAGEPRGQLTASRFDVA LVDALGRVEIIENAFAA >RSP_1678 putative RecO protein MMEWRDEGALLSVRRHGESSAIIEVFTAAHGRHAGVVRGGASRKIAPILQ PGAQLDLTWKARLDEHMGAFTVEPLRSRTALLGDRLGLAGLNAICAMLHV TLPEREPHSTLWQESMVLLDALDRPGWPPAYLRWEMRLLEETGFGLDLTR CAVTGSREDLAFVSPKTGRAVSSGAAGGWADRLFPLPLALLGQGPASAEE VRQGLAITGHFLGRELAPLLNGRPLPEARARLMELLARA >RSP_2679 ATP-dependent DNA ligase MPANPRQDLDRYRAKRDFARTPEPQGRSEAPRPEAESLSFVVQKHAASRL HWDFRLEWNGVLLSWAVTRGPSPDPSARRLAVRTEDHPLDYAEFEGTIPK GEYGGGTVMLWDRGTWEPQGDFAEGLRTGQLKIRLAGERMRGRWTLVRMK PRPREKAENWLLIKEHDTHESEQTEELVERHMTSVATGRTMEQIAAGKAP PRRTRQAALPAFRPLQLARLVSAAPEGEDWIHETKFDGYRCLAALAGGRA RLYTRSGLDWTAKFGALVEDVEALEAQEALIDGEVIAPGREGGSFSELQA RLKSGGQLLFMTFDLLLLDGEDLTGQPLLARKERLKTLIGKGRGAVRFSG HIRGHGPEVHERICAAGLEGIVSKRASAPYAGSRNGDWLKVKCAHRQEFV ICGWNASDKPGRPFASLVMGSYEKSRLVYRGSVGSGFGAPLFRELKPLLA ERAQSACPFDRTPAEAKGAHWLKPELVAEVSFTELTAEGHIRHGVFAGLR SDKDAREVRLEEPAPETPAPRKSGVRKKGTKTARPDAPSPDEPAPEPARK PRTARGEKKETTMARPDDLRVAGIRISHPDRRIYDRPAVTKREVAEHAEA LAPRMLRFLKDRPVSLLRCPEGAAAECFFQKHRTRGMPVAMKTVPVETKS GPEDFITLPDVAALVGATQMGTLEFHIWGSRNRSLQRPDRLVFDLDPDEG LDFAHVRTAAAELRGLLTDLGLPSVPMLSGGKGVHVIVPLKPKAEWESVK LFSRALATHLAQEAPDRYTATMAKAGRKGRIFIDWLRNDRGSTAIAPYSL RARPGAPVATPVDWDELASARSGGDWTIRSIRDRLDRPCPLAEASARPAT LGRTVIGRLERLVAGGKP >RSP_2353 conserved hypothetical protein MTTATRGRKPTLNADRAPLARVPKAPSHLSPEAKAEWKRVLPRLVEDRIV TTADLGGVEDLCTARGIVRQIERERQAAGGVIDPKMFGVLNRAAQTARQL AAEYGLSPVSRSRIASTAAEDDDADNPLAVT >RSP_6050 conserved hypothetical protein MQTDKNMTGSGTASDPSGRPGFTDTAREAARREMDDARERLHGAAGRARE EANRARSSVSRLVLDEMDRRKEDLCDSIHGIAQSMRKGAEEAEKRDDAPA PPQMIHRAIHTLDDMADRMRHRSAEDMTRSVARFGRENPALFVGGALFAG LAIGRFLVSSSNRPRGRDWDEGDAMRADRWRGAAPGSSAHERASHEPLGA KPHDVGGQNRPAMAGRPGAAPFSAPGGAAMPGTEPPRPGSANEATARSTG MAPTAASVKPLGSGPTSGGKDGGS >RSP_2388 conserved hypothetical protein MGEGRHIGLTSNGSGEVRPQCGAICWRLEGGELQVLLITSRDTGRWVIPK GGRIEGLDDADSAAQEAWEEAGIQGEIAPQPLGRFTYQKIARNAASIACE VVVFPLAVEDMSDVFPERGQRKRKWFTPDKAARKVAEPGLREILVRFDPA PEPDPERDDGLPLGDY >RSP_1028 DNA polymerase I MTFGKGHHLHLIDGSAFIFRAYHALPPLTRKSDGLPVGAVAGFCNMLFRY VENNKGPDAPTHVAVIFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLT REATRAFNIACIETEGFEADDIIAALSCKARDAGGSVTILSSDKDLMQLV GDGVEMLDPMKNKRIGRDEVFEKFGVYPERVVDVQALAGDSIDNVPGAPG IGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEENAEQIRISKRLVA LDCNTPLTFSLEDLEVRLPVADDLLGFLNRMEFRTLTTRVAASLKVEPPP APTAAVLRNEGVPEIVEQVEAALPFDSASYACIRDAEALAAWIARIRDLG HVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASEL VADQMPLGLALSMLKPVLEDESILKIGQNMKYDAKILARHGIRVAPIDDT MLMSYAMHAGRHGHGMDELCDTYLGHKPIAIKTLLGSGKSQITFDRVPVE QAVCYAAEDADVTFRLWKLFKPQLHRARVTTVYETLERPLVPVLAEMEMA GVQVDRDTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGEILFEK MGLPGGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTD ALQEHIHPETGRVHTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREA FVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMF NVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQGFIDRYF ERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINAKGPGAGFARRAA INAPIQGTAADVIRRAMIRMPKAIRGMPATMLLQVHDELLFEVEEEAADA LIERVREVMEGAADPAVKLTVPLTVEAGRGLNWAAAH >RSP_2898 putative DNA polymerase III chi subunit MGVVMFYHLTRSSAEDTLRLLLPRALGQGWRVMLRGTDRVRLEALDLALW RVPEEGFLPHGMEGGPHDAVQPVLLGTGAIGNGAQALMLLDGAETQAAEA APLERVWILFDGLDEAELARARGQWKALTGAGVKAQYWSEESGRWEKKAE AG >RSP_2185 nuclease (SNase-like) MRPARRGGHVCGMLRLRSLLVLAALLPLPVLAAPVEGPARVIDGDTLEIE GVRVRLFGIDAPEHDQTCGDPDRLWPCGAWATERLELMLGGGAVRCEGDE RDRYGRLLATCEARGEDVGARMVRDGAAVAYRRYSARYVREEARAEAEGL GVWSGPMQRPEDYRHAPPAPPPPGECAIKGNVSRNGRIYHMPGQADYART VISGPEEQWFCTAAEAKSAGFRPAKR >RSP_1343 DNA polymerase III, beta chain MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLD IEVVDRTPAVVERAGATTVSAVMLHEIVRKLPDGALVGLSEDPASGRLTV TAGRSVFSLATLPREDFPVMASSEYSSTFKAPAPVLRRLFDKAKFAISTE ETRYYLNGVYMHVATGEEGSVLRCVATDGHRLARIDAALPEGAQGMPGVI VPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMTSKVIDGTFPDY SRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLSV NAPDSGAAEEELAVAYGDERLEIGFNAKYLLEIASQVDRENAVFLFNSSG DPTLMREGNDMSAVYVVMPMRV >RSP_6230 hypothetical protein MSFKFIPAALVLAIAGSTGAAFADTNTAQIAAGAGVSAESYSLGQIVSLK AARAAHKPALVQWILAHPKGADATQAMDAASVRQLELALGVPHGQYSPTE LVKLYGAIESGNRATEAFILKGETGTTVQADSVVAKAQLARSLGVNPADY TLSELIALQPVDRSNG >RSP_2052 N6 adenine-specific DNA methyltransferase, D12 class MKQVPPAAPVAPWLGGKKRLHPLILERIEAIPHRAYVEPFVGMGGIFLRR RFRPRLEVMNDRNGEIINLFRILQRHYPQLLEIMRFQICSRREFDRLRVT DPATLTDLERAARFLYLQRLSFGGKLDGVFGVSAGHGPRFSLARLEPVLD AAHERLDGVVFESLDWADLIPRYDTAETLFYLDPPYFGGENDYGRGIFDR AQFARIAEILGSLKGAFLLSINDTSEIRALFGRFHLEPVRLNYSVSAAGG TEAQELLVSNRERIATLL >RSP_1458 Putative DNA repair enzyme MARRRILSLWFPRLGAERLLRRRKDTLPPPFAVVGDRQGAQVLVSVSAEA ETLGLGPGQGLRDATAICPHLMTASEDPASEAAFLAALRRWAGKFSPWVA EEPPAGLMIDLTGCAHLFGGEEKVLGVVEADCAGLGLTVRAAVADTPGAA WALARHAGRALQGNLNGDAIEQEAHATRSRASRRRTFAPPSGGPLGLISA PGALRAALEPLPVAALRLSEGTVQSLARLGLRRVGDLLDLPRASLARRFG QEVTRRIDQALGLEPEPVSPAGAPLHFAVRLTLPDPIGLREDVEAGLDRL LGPLCDRLKEKGRGARRVRLQAFRSDGQVPAVEVGLAHTTCAPERIRPLL ALKIDQIDAGFGIDMLRLSAVETELLTVASGKGRGPAGRPAEVLADVVGR LGARLGAEGVTRLHPAESHVPAKTALVLAAAWSEAAGPWPEPPGRRPLIL FPPEPVEVVGAPPHRVCWRRRDRRIVRAEGPERILPEWWLEEPDWRSGAR DYWAVELEEGERIWLFEAMGGVVSGGWWVEGEMA >RSP_1388 DNA-binding protein HU, form N MSKPMTKTQLVATLADEMGSDKKTANAALDAIASIVAREVAAGGAVTLPG LGKVVCRERPERQVRNPATGEQVTKAADKQVKFTIAKALKDSVNA >RSP_0003 putative site-specific recombinase MSSAIQIKGDSFRRQAEASAKYAAEHDLDLIDDYKLADLGVSAFKSDNLT TGALGRFVAECEAGEIEAGSFLLIESLDRLSRDKILDAFSLFARILKTGV KIVTLSDGQVYDGSSDQVGSIYYAISVMIRSNDESKIKSTRGLANWSQKR KLAAEHGVKMSSQCPAWLKLSVDRKSYLIDKERAKIVQRIFEASASGKGA NLITKELNRDKVPTFGRGALWAEAFVSKTLRNRAVLGEFQPGQYVSGKRQ PAGDPIPGYFPPVIEEELFDIVQASLRGRLLAGGRRGEGQSNIFTHVAFC GYCGSKMRHRSKGSRVKGNPPHRYLTCFNRFNGPGCDCKPLPYAAFERSF LTFVRDVDLRGLLEGAKRKSEAKTIADRITVNEEKVRKADERIRDYLIKI EGAPDLAEIFMERIRELKAEKDDLVRSIEESNDALSKIKSDNVTDEELAS LISTFQIHAGKIVLGLRIVSNRSLSALTSIRMVKSAKMIRRLILCALREI LMPKRSLRQ >RSP_2013 DEAD/DEAH box helicase MTETLPIDAALPGLIAALRAQRMAVLQAPPGAGKTTRVPLAILKAGLTEG RIVMLEPRRLAARAAAERMAATLGEPVGRTVGYRIRGEARVSRETRIEVV TEGILTRTLQDDPELTGIGALLFDEFHERSLNADLGLALALEVRSALRED LLLLVMSATLDAGPVAGLMGGAPVVTSEGRAFPVETRWLPRPLPAGARLE PEVAALVRQAVAETAGDLLVFLPGEGEIRRVEGLLGGLGCEVAPLFGALD LAAQRRALEEGPGRRIVLATSIAETSLTIPGVRVVVDAGRARRARFDPSS GMSRLVTERVTRAEADQRRGRAGRVAEGICYRMWTRGEEGALAAFPPAEI EAADLTALALELAVWGSADLPFLTPPHPGVLAEARGLLEGLGALEEGRVT AHGQALARLPLHPRLGHMLTVAGPSAAPLAALMSDRDPVRGPPDLALRLA ALADPKRFSDEHPHEVNRAALARIREEARRLARAVTTPEAGLSVGQMAAL AYPDRVGLRRKGEAPRWVLSGGKGAAMEPGQPLAGVRLIVATDLDGDARE AKVRQAAPIPESDLRALFAPQIRWREVCHWSRREGRVVARRQECFGALVL DDRTWPEVPPEALALAAVEGLRQIGLPWSASARRLRARVELLRAEGAPMP DMSDAALLEDPGWLLPFLGGRRTEAELRALDLTEALRARLGWEGMQLLDR LAPPQFETPLGRRVPIDYEGEAPGIEIRLQELFGVTEHPTVGPKRLPLRI TLLSPGQRPVQVTMDLPGFWASSYADVRRDMRGRYPRHPWPEDPTVAEPT LRAKPRGT >RSP_1981 Deoxyribodipyrimidine photolyase MNVLIWFRNDLRVADHPALARAADDRVLPLAIVDPAEWADPARSGRQWAF RAECLADLRADLAALGAPLAVRVGDAQAVLSKLCKLHRIGRILCLEDPAF AELDLALQAWAGGTGLDFIRLKPGAGAPAALTPLPAVEPGPIPPARALRL AEDRCPHRQPGGRPQGQLLLQSFLERRGALYRDGRNRLLQAERASSRLSP HLAAGTLSREEVLAAVAARLAERPDADWVRSLGAFRAALASGAPGARGAV CPPGRPGGGGSPRGYLDQTEGEADALRLRLAALHAGETGLPFVDAALRAM AASGWLPARLRGMLASVALHHLGLSEQAAGAALAAGLTDHSPPIHWAQMR RVALGRPVDPERLAGVLDPDGAFTRRWLPELAEVPDRVLQAPWRWEGARG LLGRRYPEPLVDPSAARAAGRTLARRPTARVEVIEGAAPRRPASDPTQQL CLDL >RSP_1208 NUDIX hydrolase MIRRYGDPVRADRHYRRRPGVYAVLLSGDDILTTFQETPLPEFQLPGGGI DPGEHPMAALHREVREETGWRIGGLRRIGAFRRFTYMPEYDLWAEKLCTV YLARPIRRLGPPTEPGHHAVWLPVEEALVRLGNAGDRALLAAALR >RSP_2497 ATPase MANGIKRQHEPPRIVGDLLQSEIAEKQARSIRCQMTIAKLPLVKDIEQFD FTGTPVNEALVRELATRSLVADQRNVVLIGGTGTGKSHLAIAIARALIRN GTRGRFFNVVDLVNKLEAETRSGKQGRTADYLGRLDFVILDELGYLPFAQ AGGQLLFHLISRLYERTSIIVTTNLAFGEWPTVFGDAKMTTALLDRLTHH CEIIETGNESWRFKNRA >RSP_0744 DNA-3-methyladenine glycosylase I MDLTRCPWCGQDPLYTAYHDTEWGVPEWEARALWEKLILDGFQAGLAWIT ILRKREAFRAAFQGFEPAVIASWGEADVVRLLGDAGIVRHRGKIEATIGN ARAFLAIEERQGFSDFLWKHVEGRPVQNRFATMAEAPTETAAARAMSKEL KAHGFRFCGPTIVYAFMQATGMVNDHLVGCHAHDRCASLAARPAG >RSP_0780 hypothetical protein with ATP/GTP-binding site MKGQLAFDLPIRPALSREDFFISPANALALASLDGWRDWPRGKMVLVGPR GSGKTHLAHIWAAQAEARLIPAEALARADLPALAADGAVAVEDAERLGGD RAAEEALFHLHNLMLERAGALLITAAGPPRDWGLGLADLKSRMQAASVTR LEAPDDALLSAMLVKLFTDRQIAVPGMLVPWLVARMDRSCEAARALVAAL DARSLAERRPISRQMAAELLGLTATD >RSP_1525 putative Helicase/Exonuclease MFDTPGPRLFGLPPGVDFPAALVRGLRARMAGAAPEAMARVELYVNTQRM RRRVTDLMTAEGAGFLPRIRLVTELPPVPGLPAPVPPLRRRLELAQLVAR LIEAQPDIAPRSALFDLSDSLAELIDEMQGEGVPPEAIARLDVADHSAHW QRTQAFMAIVAPMFGADAPDAQALARMAVERIAARWAEAPPDHPVIVAGS TGSRGTTSLFMQAVARLPQGALVLPGFDFDLPAAVWEGMDDALTAEDHPQ FRFHRLMGLVGAGPAEVGRWTDEIPPSPARNRLISLSLRPAPVTDQWLTE GRHLTGLAEAARGMTLIEAPGPRAEALAVAMILRKAAEEGRRAALITSDR GLTRQVAAALDRWGIVPDDSAGKPLALSAPGRFLRHVARLFGRRLTGETL LTLLKHPLTATGADRGNHLRWTRDLELHLRRKGPPFPAAADLALWAGTRP ADGVADWARWLGGLIEGLDAAGPRPLADHVAAHLALAEALATGPAGDTTG ELWLKEAGEAARAAVEELRREAPHGGELTPADYTDLFDAILARGEVREAV QARPDLMIWGTLEARVQGADLVILGGLNDGTWPQLPPPDPWLNRQMRLKA GLLLPERRIGLSAHDYSQAVAAPEVVLTRATRDAEAETVPSRWLNRLMNL MSGLKAGGGPEALAGMRARGRDWLDLAAALEQPATPVPLATRPAPQPPVP ARPDRLAVTGIRKLIRDPYAVYARHILRLYPLDPLHRAPDARLRGSILHR ILEAFVKDRAPGSDRPTERARLMRIAEAVLAEEVPWPAARALWLARLDRA AAFFLETEAAHAGTPVVLEEEGRVDLTPLRFTLTAKPDRIDVLPDGRLHI LDYKTGTPPTKKQQEQFDKQLLLEAAMAERGGFRGLGPAEVARISYIGLG TSPKVESVETDAALLGQVWEGLHALVGRYMRREQGYVSRRAMFGERFPGD YDHLARFGEWEMSDAPVPVPVGAEAPEAGSAEAGTDRDRGSCPEDAA >RSP_1793 Single-strand DNA binding protein MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKE RTEWHSVAIFDENLARVAEQYLRKGSTVYIEGQLETRKWQDQSGQDRYST EVVLRPFRSSLTMLGGRGEGAGAGGGMGGGGYEDRGGPDNYDNYGSGPRG GASSGGAPSGGGRRNDLDDEIPF >RSP_2080 Putative Tyrosine recombinase MLPRVHRVRRGGTVYKYHRRTRKELPRDVPEDDPRFVAAWLAEEQRAPTV RSRSQAGTIAAACEAYLGSRSYRELSDGYRPVIRRHVERIKEQGEKALLK DLLPRHIRADLEPLSPPVASSRLKAWRKLAEFWLLKGMLDADPSEGVKRK KMGKVAGFTEWTAEDLEAFRARWPIGTAQRLALELYQWTGARCVDVIRLG PQMVGRDGVLTYVQQKTGNPAHVPWTCPAFGLEEQRADLMRCLPVGSPVY MLTEYGKPRTQKGVSQWFSAAAREAGLESRTAHGLRKYRMNALAEHGASV LVMQSWVGHTTLLEVQEYTRRADRRRVISGGHPVKRDPAGA >RSP_2040 possible Transposase fragment MQIPRTDGVVRSDPCRLTDERMERLTPFFPKSHGKPRVDDRRALSGMIFI NRDGLRWCDAPREQA >RSP_1662 Integrase/recombinase MQRIRRGDRVLCYHRPTGTRLPDLPETHPDFIAAWAKAEASKPDLAPPVA DKSVAKVVRALRASKRWKGFAASYRLNLRFHLERIETEHGALPLRGLRQK HVEMDLGKLDPNPRNVSLKCWRLIFAQAKADGIIESDPSHEIGKIVTKSP GHVAWTTAEVAAFRARWAVGTRQRAAFELLAWTGCRVSDACRMTRTHLGS DGLMTFRQQKTGGPAYVPWTCALPSWALRWEEERETVRAAVMATAGFTLL ETSYGKARSVKGLSNFITAAAAEAGIEGRTPHGLRKFRLTAIAEAGGPAH AIMAWGGHASLSEAEAYTRAASRRGLVMGPEQERNDVNDPGNSCKRAK >RSP_2865 putative transposase MGWVLMSERELNRIEILSKVLDRRMTTTEASVLLAIGPRQVQRLLRRLRE DGAAATRHGLRGRPSNHRLSPGLRDLALALVRETYVDFGPTLAAEKLAER DGLHVSRETLRKWMVEDGLWLSRPQRRRFHQPRLRREHLGELVQIDGSDH HWFEDRAPACTLLVLFIDDATSRLMEMRFVPSESTFAYFAALECYLTRHG RPTAFYSDKHSVFRVARQDARTGHGMTQFGRALAELNIEILCANSSQAKG RVERANRTLQDRLVKEMRLAGISDMEAGNAFLPGFIERHNAQFARVPARP DDRHRPLNLPPDRLADILCWRDQRYVGNQLTFTYEHRRILLEESDLTRGI VGKYVDTYAFPDGRFEARWKGISLPYRSFDPEQQHVTHAAITANKRLSDV LALARSLQESQPPRVSRVGRQRTVYEPTGRRNDGWNSKLARRARQRADGT AKPPDIAAE >RSP_2361 putative integrase/resolvase recombinase protein phage-related integrase MARLSHLLRRGAAYYARTRVPLDLIAIVGKKELVKALGTKDETEAKRRLY PQLDAWQREFDDLRARRSLVAADREHAVWDHYTAALTRDEAERATLPGEA EIAAAEADVIRRADRGEITSAEPLAILDATLELQVKQQAPALASDTRKAK LADLREHLVKGETALISHEVDDYLNRNRLLVERGTPDWISLARRMMRAEA EALERTLERDRGDYTGQPRDPLVKPPTAEKRAEMEVAPPGESIAEAVEAF RTENPRNVSKGRIEEACRDIGVFMETVGPSFPVSKLTKKHVREWKALLIK YPLRATEVAEFRGMTIRQIVEANEQAKRPVLSDRTVNRYLSSLSAFCSWA EANGYIASNPCSGMALPKERGSKTLPFTSDQMNTLFRSPLFAGCESEAAW RYISKPGPVLIRDHRYWVPLIMLYSGARPGEIAQLATSDLRQEHGRWIFH ITTEGETHEEGKQVKTAGSMRVIPVHSELIRLGFLAYHSQRVEAGDKRLF PGAKRNERGQMMSEFSREFGKYLARIGLKSGRGLSLYSFRHGAADALRRA GYLDNEFGFILGHTEGSMTGRYGIMPQGMLEQRVKLIEAIQYPGLNLDHL ANVIT >RSP_2684 putative endonuclease involved in recombination MIHDRIEDFLASLPRTGALAGLDLGTKTVGVAVSDGLRRIATPLLTVRRT KFTEDAAKLKAIAAERRLVGIVLGLPRNMDGSEGPRAQSTRAFARNLVQV LPLPVGFWDERLSTVAAERALLEADTSRKRRAEVIDHVAAGYILQGVLDR LDWLGREGGA >RSP_2381 putative 3-methyladenine DNA glycosylase MEGQAACFAREAPAVAVDLLGAHLQVRGVGGRIVETEAYTPDDPASHSFR GPTPRNAAMFGPPGCAYVYLSYGIHLCLNVVCAPGHAVLIRALEPTEGLA QMAARRGTDVARLLCSGPGRIGQALGLTLADDGTAFGTRGFAVRWGAPVA AGEILCGPRIGISRAADMPWRFGLRGSPCLSRRF >RSP_0136 putative integrase for prophage CP-933U MPKGERTRTDYRRWGLRLAEEFKDDPAEIFEDPGSRGEVNEWRKQWAHSP RQYDYAGTVAAVLLNWAVDQGKIRQHHCQRLRKVYEVDRAEIVWTPDHRE AIEAKAPEWIRRILTAACETGLRVADLTKLAWSHVEATPHGRRIRVRTSK RKRVAYIPVTEAMGKLLDATPRDRMLILLSERGKPLTPHRASEGLRQWRD KAGLTPESLGYDLRLQDARGTAATRLLSAGLSLAEIAAHMGWSIRHAAAV IEHYARVSPDETDAILVKLATAKGSAS >RSP_0604 conserved hypothetical protein MMWFPPDGTRPELAAYLACAQARAEEAVSAAGLAGSAVKQGRLFDFALRP LQAACAEILLPSGPTLAVIEDETGAGKTEAALLLAHRMIAAGKGRGLYFA LPTMATSDAMFSRAEQVIGRMLTAPSLTLAHGRAGLSEGFRDLVVGKPRA EDAASCTQWLAESRRRALLADVGVGTIDQALLSVLPVRHQTLRHFGLSSK ILIEDEVHEMGEPYIGRELERLLQTHRAAGGSAILPTATLPMALRGRLLA TYGGDNPGPAYPALTLAGGEARVEFPPDRRPVKGAVRVTRVQQAEDAADL LAEAVRRGAACVWVRNSVDDAIEAVAALRARSVAAQLLHARFALADRKRI EAEVLARVGRDGERDNRVADIKKAWAGAVVKAAELAAKAGREIDLSDTTP HVLRHTAITWAMQRGADMWEAGGFFGVSRETMEEVYAHHHPDHQASAVEA MERRRK >RSP_2727 probable 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase MTGRILLTPDCIAEGVACLAEREPRFARAHALTGDPPLRRRPEGFAELAG AILGQQVSTSAAAAMRMRMEAAGLLDPEAALLAGEEALRACGLSAAKIRY IRALAAATVDYAGLARLPDAEVVATLTALPGIGRWTAELYAMTSLGRADV LCAGDLALQEAARLLFELEVRPSERALRAMAADWSPWRGVAARLLWAYYR HAKGREGTA >RSP_1032 possible O6-methylguanine-DNA methyltransferase MTDSLAAERPAYHYAVIARALAEIDAGGPALSLEDLAARIGLSPAHFQRI FSQWVGVSPKRYQQYLTLDHARRLLAERFTVLDTALATGLSGPGRLHDLF LRWEAMSPGDFARAGEGLEIGWAWVASPFGEALAMATPRGLCGLAFSAEM GREAAMADLAGRWPAARLTEDPDRVVPLAEAAFGGAGADLHLIGAPFQIK VWEALLRIPSGHVTTYSEIAQSIGHPAAVRAVGTAVGRNPISFLIPCHRA LRKSGGLGGYHWGLPVKRAMLAWEAARADAIA >RSP_1123 DnaE, DNA polymerase III, alpha subunit MFRVRSSDSGTAMPFVELSATSNFTFLTGASHPEELMRRAASLGLPALAI ADENSVAGIVRAYGEAKEIARETGSAPRLIPAARIVVREGMSVTVLPRDR AAWGRLCRLLTLGRRAAPKGSCDLGFADLLAHAEGQEMLLHPPARSSGGW QTLAARLAAACPGRVALILAPHYAGQDRVRFERQALLAARLGIPTVASGL PILHHGARRRLADVLTAIRLGCRVDELGRRALVNGEQRLRSEAEMLRLYP GHEEAVFRSAEIAGRLDFCLSELRYEYPSEISKGESPADRLARLTREGLV WRFPAGVPEKIAAQARHELELIGKLGYEPYFLTVNDIVRFARDRGILCQG RGSAANSIVCYALGVTSVDPEVGTMVFERFVSEARNEPPDIDVDFEHERR EEVIQHIYSRYGRDRAGLCATVIHYRGKRAVREVGRAMGLSEDTLTAMAS QIWGWGGPGALTERRLREIGLDPNDRRLWLALQLIDEIQGFPRHLSQHVG GFVITEGRLDELVPIENAAMEGRTVICWDKDDIDMLGILKVDVLALGMLT CIRKAFDLIESHHHTSYTLATLPRDDSQTYDMLCRADSLGVFQVESRAQM NFLPRMRPRCFYDLVVQVAIIRPGPIQGDMVHPYIRRRNGQEDPHLPSDA LGKVLGKTLGVPLFQEQAMQIAIIGANFSPEEADRLRRALATFKKHGNVT ELKERFMNGMLANGYDKDFATRCFSQIEGFGSYGFPESHAASFALLVYAS AWIKCHHPGIFACALLNAQPMGFYAPAQIVRDARAHGVIVLPPCINASLW DNVMERDREGRLALRLGFRQIKGVAEEEAQWIVAARGNGYRAVEDIWRRA GVPPATVTRLAEADCFAALGLTRREAQWQARALSGDRPLPLFAGDMDGEG IVEPEVVLREMTLGEEVVEDYVSFRLSLRSHPMALLRELV >RSP_1342 dnaA, chromosomal replication initiator protein, DnaA MTNETWVQVREGLLKRVGRNNFVTWIEPLRLMGLDEGVARFEVPTLFFGD WVQRNFADHIRMRLTEAGSPVERLEFAVSNTPRAPLKEVKAAAPAASPAR ARPAPPEEDLRGAPLDARFTFDSFVVGKPNELAHAAARRVAEGGPVTFNP LFLYGGVGLGKTHLMHAIAHDLQKRQPGARVLYLSAEQFMYRFVQALRER EILGFKELFRSVDVLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIVIS ADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKADFYREQY RGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDC LADILRASDRKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIARPRQVAMY LAKQLTPRSLPEIGRRFGGRDHTTIMHGVRKIEELMATDSQLADDLQLLR RLLQA >RSP_1928 dnaB, Replicative DNA helicase, DnaB MNEVRALREPQAEKSPEVLPHNIEAEQQLLGAILTNNDIFDRIASVIRAE HFFDPVHQRIFEIAAARIQKNALASPVTLKAFLEEDAGLKELGGPAYLVR LAGAAISAFAARDYAQMIYDLAVRRELIGLGRDIAAKAARVDVASEPKEQ IVEAEQKLYRLGEQGQAERGFQSFLKAVTDAVNVANAAYQRDGGLAGIST GLADLDKKLGGLHPSDLLILAGRPSMGKTSLATNIAFNIAKAYRRGRLPD GAEGAIEGGVVGFFSLEMSAEQLAARILSEAAEVPSEQIRRGDMTEAEFR RFVEAAKALEACPLYIDDTPALPISQVAARARRLKRTHGLDVLMVDYLQL LKGSGGSRDNRVQEVSEITQGLKAIAKELNIPVVALSQLSRSVESRDDKR PQLSDLRESGSIEQDADVVMFVFREEYYREREKPGDHEMEKMAQWQAIME QVHGKAEVIIGKQRHGPIGSVELSFEGRFTRFGNLVRPWQQGIESY >RSP_0397 dnaG, DNA primase (DnaG) MSLPPGFLDELRNRVPLSQVVGRKVTWDLRKSNQGKGDFWAPCPFHQEKS ASFHVDDRKGFYYCFGCHAKGDAIAFVKDTENVGFMEAVEILAREAGMAM PARDPRAAEKADRRSQLAEVMEEAVKFYRLQLRTGAASAARDYLARRRLS EEGQERFGIGFAPDGRQALFQALTGKGIAPDLLVEAGLCARPEDGGAPYD RFRGRIIFPIRDARGRAISLGGRAMDPAARAKYLNGPETPLFDKGRNLYN AGPAREAAGKGQPLVVAEGYMDVIALSEAGFRATVAPLGTAITEDQLRLM WRIHPEPVIALDGDAAGIRAALRVVDLALPLLEAGQGLRFAVLPPGLDPD DLIRAEGASAMGRVLEAAQPMVGLLWRRETEGHVFDSPERRAALDKRLRA AVQRIADPSIRRHYGDELNRLRMEIFGTSVPRRAFHRGGKREPLAVAPHP STRASLLATAAGERIEEEMRLGVILATCALHPTLIHEFETALEALELSDP DHRALHRVLLAAAGMAEADTARGAIRAEAGPALERLLALTHVRICPSVRH PGDLEMARMCLAEELAKLEARRGARQEIEEAVEDLAGLVDEGLTWRLSQA AEARHRAERARLDDSSDLGEDRAALSRSLQEMIDRQIWVKKRG >RSP_1236 dnaQ, putative DNA polymerase III, epsilon subunit and related 3'-5' exonucleases MREIVLDTETTGFEPSEGHRIVEIGAVELFNHMPTGRTYHQYINPERPMP NEAFEVHGLGDEFLRDKPVFAAIGRAFLDFVGEARLVIHNAAFDMKFLNF ELGRAGLPRLAPDQALDTLALARQRFPGAPATLDALCRRFGVDNSAREKH GALLDSEILAEVYLELIGGRQPDFGLASSAGARPGSPEGEWRPRPRPVAL PPRITEEEAAAHAAFVAKLGDGAIWLKRA >RSP_0710 dnaX, DNA polymerase III tau and gamma subunits MSDTPEQGYQVLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMT GVRGVGKTTTARIIAKGLNCVGPDGTGGPTTEPCGQCEPCRAISEGRHVD VMEMDAASRTGVGDIREIIDSVHYRAASARYKIYIIDEVHMLSTSAFNAL LKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLKRIEPEVMMAHLSR VAGKEGAELTRDALALITRAAEGSVRDAMSLMDQAIAHGAGETTADQVRA MLGLADRGRVLDLFDLVMKGEAAAALAELSGQYADGADPMAVLRDLAEIT HWISIIKISPEAAEDPTTPPDERTRGLEMAERLPMRVLTRMWQMLLKAIE EVSLAPNAMMAAEMAVIRLTHVADLPDPEALIRRLQSEPRPGPGPGGGVQ AGTQAAPAAPMARMQAAPPRAAHPAPQASGAATAVALAPGTLPCQSFEQM VELIRQKRDMKLLYEVETGVRLVRFAPGRIEFEPAPDAAPDLAARLSQRL QGWTGGRWGISVVSGGGAPTLAEERDKGRLEEEARALENPLVQAVMAAFP GARIAEIRRLEEQAAAEALPEVEDEWDPFEDN >RSP_2630 gyrA, DNA gyrase/topoisomerase IV, subunit A MGRPLSGLPQVSIAEEMKTAYLDYAMSVIVSRAIPDLRDGLKPVHRRILY AMHETGNTHDKPYRKSARPVGDTMGKYHPHGDGAIYDALVRMAQPFSMGL KLLDGQGNFGSMDGDNAAAMRYTEVRMDKPAAFLLADIDKDTVDFQDNYD GKDREPTVLPARFPNMLVNGAGGIAVGMATNIPPHNLGEVVDATLAMIEN PDISTERLMEIIPGPDFPTGGVILGRSGARKAYLEGRGSVIMRAKARVEE IRKDRYAIVLDEIPYQVNKATMIEKIADMVREKKIEGIAHVQDESDRVGV RVVIELKRDATPEVVLNQLWRFTPMQTTFGCNMLALNGGRPEQLTLRDFL SHFLTFREDVVARRTAYELRKARERSHILCGLAVAVSNVDEVVATIRSSA DPAEARERLMTRRWPAADIADYIRLIDDPSHTINEDGTYNLSEIQARAIL DLRLQRLTAMGVKEVTDELAELAAKIRDYLDILGSRERIMAIISDELREV KDLFAVPRRTEISEWAGDLEDEDLIEREDMVVTITSGGYIKRTPLAEFRS QRRGGKGLASMATKEDDVVTTLFVANTHTQLLFFTTDGMVYDLKCWRLPL GGRTAKGKAIVNILPIATGISIAALMKIDEPEEEWDRLQVVFATSEGDVR RNRLSDFTNVKRNGKIAMKLPEGVSLVNVSICDEQDDVMMVTALGRAIRF STTDVRVFSGRDSTGVRGIRLASGDRVVSMSVIRHFEADPAERAAYLKQR RLMAGVTEEAEADEEEDAVEAGQLSPTRYAEMSAAEDLILTITARGLGKI SSSHDYPVRGRGGQGVTAFEKSMRGGQLVASFPVEMSDQVMLATSGGQSI RVPVEQISFRSRSAGGVRVFDTGASEEVVSVARIADAGDTAEGVEDAEPG ETGGDEA >RSP_0931 ialA, NUDIX hydrolase MERTIDPLTLPYRPCVGIVLINREGLIFAGQRIDSPVPAWQMPQGGIDEG EKPREAALRELWEETGIPAERVEFVAKAPDWVTYDLPPELLGRVWGGKYR GQRQKWFLYRYLGTDEEVGIGTDHAEFSCWRWIGAEEMVAAIVPFKRAVY EEVVATFRPHLA >RSP_2611 ihfA, Histone-like DNA-binding protein (IHF) MSDKTLTRMDLSEAVFREVGLSRNESAQLVESVLQHVSDALASGETVKIS SFGTFTVRDKSARIGRNPKTGDEVPISPRRVLTFRPSHLMKERVAAGGKN >RSP_0217 int, possible phage-related integrase MKLSAAGVEKIKPTDKRQEIPDSLCVGLYLIVQPTGKKGWQVRYRHGGVH RRMSLGAFPVLSLAGARERARQTLAAASAGTDPAAEVKAAKAPKLDGDRD KIKTLIGQFDKRHLSKLKSGAVVRRELERHVVSAWGERDVHQIGKRDVID LLDGIADSGRVVTANRVRAYLAKFFGWCVERDILATSPAAGVKPAGKETS RARVLTDDEIRWFWTACEAEGFPWGPFGKVLLLTGQRLNEVAQMTDSEIR GDLWHLTADRTKNGRAHDVPLTGAVRAALDEVERVTDEEGRVRFIFTTTG RTPVSGFFKARAVLAEAMVGIAQKERGEPVEIPRWTFHDLRRTAATGMAR LGIPVRVTEAVLNHVSGTGGGIVAVYQRHDYADEKRQALEAWARFVLSLV EGEADNVVRLQHG >RSP_2413 lig2, putative ATP-dependent DNA Ligase MKRFAALFDLLDRTTRTSAKVAALADYFRTAPEEDRVWTIGLLSGRRPKR AVNTTELRSWAAEASGLPVWLAEEVHPIVGDLAETISLLLPEPSQTSDRT LDGWMRELVSLTGRPAEVRRAAILDAWDRLSTPERFLFNKLITGGFRMGV SQGLMTRALAQATGVDEAVLAHRLMGDWKPSRIGFETLIGAHDPEADASK PYPFALASPVEEVAALGDPADWLAEWKWDGIRGQLVNRAGAFALWSRGEE LVTDRFPDLAPLRDFLPPGLVIDAEVLAWGGEGPLPFAALQKRIGRLTVP KKILAEAPAHLLAYDLLEENGEDLRAAPLAHRRARLEAVLSALPPGVPIS PSPLVAFDDWETLGEIRATAREKIAEGLMLKRASSPYFVGRKRGDWWKWK LDPYTVDAVMLYAQQGAGRRATLFTDFTFGVRDGDDLVPFTKAYSGLTDA EFRQITDWVRKNTLERFGPVRRVPPELVFELAFEGIQASPRHKSGIALRF PRMVRWRKDKPAAEIDTLESLRELLAATGGAAP >RSP_2622 ligA, DNA ligase MQDERPVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALK VRNRAIEEQFPELRRSDSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLA EVEDWIERIRRYLGHVGDLLFTAEPKIDGLSLSLRYEKGRLVQAATRGDG ETGENVTENARTIADLPTELDGAPDLLEVRGEVYMSHEDFAALNGRQEAA GQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAHSEPLAATQHEA IARLAALGFATNPLTRLCTGPEELLAQHAQIERQRAALGYDIDGVVYKVD DLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVAR LKPVTVGGVVVANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAG DVIPKVADVDLDRRPEGAAPYRFPETCPECGSEAIREPGDSVRRCTGGLI CPAQQVERLKHFVSRAAFDIEGLGAKQVEALWRDGWIRQPADIFELPNRY RDGMQRLENREGWGRKSAENLFAAIEARRRIALHRLIFALGIRHVGETTA TLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGAVLATSLVTAFH QEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEAK ARAEALGAKVSGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRL IGDA >RSP_2850 mfd, transcription-repair coupling factor (helicase) MQNGTRIFLGGAPEGYDARLVAKELDRGAPVIHVARDDKRLEAMRTALAV MAPRAVVLELPAWDCLPYDRVSPNPEISARRMATLAALAHGMPGAFVLLT TLNAATQRIPAREVLRAASFSARVGDRVDEGRLRSYLARMGFSLTDTVTE PGDYAIRGGIVDIYPPGVAGPVRLDFFGDVLDGARRFDPETQRTVEKLDL VELAPVSEVMLDEGAFTRFRQNYRIEFGAAGTDDPLYEAVSAGRKHQGME HWLPFFHARLETLFDYLPEASVMLDDQVTPARISRWEGIADQYDARREAM TAKGRLDTVYKPAAPDLLYLDEAAWEAAVAGHRVIQLSPLAQSPGPGVLD AGGRMGRSFAPERQAENISLFGALVDHVRSLREDRQVVIASWSEGARERL KGLLEEAGLQGTKLAQDIRDVPEARGGTHLMVWALEQGFTAPGLAVISEQ DVLGDRLISKPKKRRKAENFLREHDTLTPGDLVVHVEHGVGRYMGLETLR VPQPPSNKPGPPHDYLHLVYAEDAKLYLPVENIELLSRYGHEEGLLDKLG GGAWQAKKARLKERIREIAERLMRIAAERHLRHAPILEAPHSLWEAFSAR FPYQETDDQLSAIADVVKDLESGSPMDRLVVGDVGFGKTEVAMRAAFVAA LAGMQVAVICPTTLLARQHFRSFAERFRGFPMKVHQLSRFVSAREAAETR SGLADGTVDICIGTHALLAKGVKLKNLGLLIIDEEQHFGVSHKERLKEMR SEVHVLTLTATPIPRTLQLSLTGVRDLSIIATPPVDRLAIRTYVSEFDTV TIREALLRERYRGGQSFFVVPRLSDLPDMEAFLRDHVPEVSYVVAHGQLA AGELDERMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLSQL YQIRGRVGRAKTRAYCYLTTKPRAPLTPQAIKRLRLLASLDSLGAGFNLA SHDLDLRGAGNLLGEEQSGHIKEVGYELYQQMLEETIQKIRSGELQGLSE PDEQWAPQINLGVPVLIPEEFVPDLDVRLGLYRRLSGLTTKVELEGFAAE LIDRFGPLPREVNTLLLVVRIKAMCKRAGISRLETGPRGATVQFHNDKFA NPAGLVDFIKAQGETARVKDNKIVLARDWKTEGERIKGAFAIARDLAEKV VKPEKTPAKVARPAG >RSP_2422 mgpS, putative ATP-dependent helicase, MgpS MLGHRTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEERIVPERTQYW VCTVEAMPMEIGADFVAVDEIQLCGDPERGHVFTDRLLRARGLVETMFLG SDVMRGAIAALVPHVTFLRRERFSTLSYAGSKKISRMPPRSAIVGFSVDN VYAIAELIRRQKGGCAVVMGALSPRTRNAQVALYQNGDVDYLVATDAIGM GLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQIAGRAGRHTEAGTFGVTG EASPLDEGVVDAIENHRFAPIQRLHWRNDRLEFGTVERLIASLEEPTSNE WLSRARESDDLHALKALSEEPEVRARLHSPHEVRLLWDVCRIPDFRSIST TEHVTLLARIFGFLCEGKVPNDWLAGAIARIDRPSGDIDTLSKRLAYIRT WTYVAQRRGWVQDESHWREETRAVEDRLSDALHGALTQRFVDRRTSVLMR RLKQKESLVAEVNDKGEVTVEGEFVGRLEGFRFRQDASNSPDEARTLRQA AVQALRPEFHLRADRFYNSPDTEMDFTEQGGLMWGEQAVGKLIAGPEPMR PQVEAFVDEDAGPEVAEKVRRRLQHFIDRKVAAQFEPLLAMSRDETLTGL ARGFAFRLVESLGLIPREQVAEEVKSLDQEARSALRKHGVRFGQFTIFLP LLLKPAPTRLRLVLWSLANGLQEFPESPPPGLVTIPHIADVPKMHYTLAG YHPAGQRAIRIDMLERLADLLRAKDSRAGFEATPDMLSITGMTLEQFAGL MQGLGYRAEPGERPKVKAAPAAAEAAPAEGEAPAEVPAEEAPAAEAPSAD AEAAPDAPAEEPAAVEVESFYTFTWAPRRPDRGPRRHDRGQGEGRNRGPR ATPGDAPAEGAAAEARPPRGDRPERQGHGHGGKPKGKGGKPDRKGADRNQ PKSFESRPARSDRIDPDNPFAVLAALRDRS >RSP_1095 mutL, DNA mismatch repair protein MGSRWRSDSDSAKAGGMTLLSPKIGAARPVIRQLDEAAINRIAAGEVVER PASAVKELVENALDAGARRIAVDIACGGKALIRVTDDGCGMTADDLPLAL SRHATSKIDGSDLLDIRSFGFRGEALPSLAAVGRLTITSRVAEAEGAQIA VSAGRIEPVRPAALGAGTVVELRDLFFATPARLKFLRTDRAETQAIAEVV RRLALAEPEVGFTLTDHSAGEPRLLFRAEAEGGDLFDALHRRVARVVGAE FAENALRIDVAREGLRLQGYAALPTYSRGSGVAQFLFVNGRPVLDRMLLG ALRAGYMDVLSRDRYPAAVLNLICDPQRVDVNVHPAKAEVRFREAGEVRG LIVTALRQALAGAGHRASTTVAGETLEAFRPERPAAAGPGPASRIYQMDR PSVAAVARSFAFQAPEPAMPGLAEAPAARVEAPAAEEAHDRPLGAARAQI HGNWILAQTESGLVIVDQHAAHERLVYEKLKRQRDETGIARQALLIPEIV ELSPTDAARLLEAADELASAGLVIEPFGGGAVAVREVPAILGKVEAAPLL RDILDDLADLGSSDRLQARMDAVLSRMACHGSVRSGRALRAEEMNPLLRE MEATPLSGQCNHGRPTYVELKLADIERLFGRR >RSP_1218 mutS, DNA mismatch repair protein MutS MSDDTVTPMMAQYLEIKAQNPGAILFYRMGDFYEMFFDDAALAAEALDIA LTKRGKHRGEDIAMCGVPIHAAEGYLLTLIRKGFRVAIAEQMEDPAEAKK RGSKSVVRREVVRLVTPGTLTEDTLLEARRHNYLCAFAEIRDEAALAWAD ISTGELSVTACPLPRLMPELARLAPRELLVADERELDWIEEVGCALTPLS RASFDSASAEKRLCALFGVGTLESFGNFTRAELSAMGALVDYLDLTQRGK LPLLRPPVRETVGGTVQIDAATRRNLEITQALAGGRDGSLLSAVDRTVTA PGARLLERRLSSPTRDLGLIHERLGAVRWLTEEPRLREEMRASLRRVPDM DRALSRLALDRAGPRDMAAIRAGLAQAQEIAQRMPAEAPALVTRALEALG GHEALVDLLDQALVAEPPLLARDGGFIAQGFDADLDETRRLRDEGRGVIA SMQAGFIEVTGIQSLKIKHNNVLGYFIEVTSTHAEKMLSAPLSERFIHRQ TTAGQVRFTTVELSELETRILNAGNRALDLEKMHFAALRTAILDLAGQIG RAARSLAELDLISAFADLAVTEDWTEPEIDDSRAFAIEAGRHPVVERALR RTGTPFVANHCDLSTGETPAVWLITGPNMAGKSTFLRQNALIALLAQAGS FVPARRAHIGLVSQIFSRVGASDDLARGRSTFMVEMVETAAILNQADDRA LVILDEIGRGTATWDGLSIAWATLEHLHDRNRCRALFATHYHEMTALAGK LKGVENATVAVKEWEGDVIFLHEVRRGAADRSYGVQVARLAGLPASVIER ARTVLDALESGERESGGRRQTLIDDLPLFRAAPPPPAPAAPKTSPVEERL REIQPDDLSPREALKLLYDLRALLT >RSP_1166 mutT, NTP pyrophosphohydrolase MKIVLVSAVALIDGDGRVLLAQRPEGKSLAGLWEFPGGKVEPGESPEAAL IRELKEELGIDTKASCLAPLTFASHAYETFHLLMPLFACRRWEGIPQPRE GQTLAWVRPQALRDYPMPPADLPLIPILRDWL >RSP_0772 parE, DNA topoisomerase II/DNA gyrase, subunit B MLFQSSRKNRAAMANDLLSGQPETYDASSIEVLEGLEPVRKRPGMYIGGT DERALHHLVAEILDNSMDEAVAGHATRIEVELHADHSVTVRDNGRGIPVD PHPKFPGKSALEVILCTLHAGGKFSGKAYQTSGGLHGVGASVVNALSDTL RVEVARNRELWVQSFSRGISQGPVKMVGAASNRRGTTITFHPDPEIFGHL QFKPARLMKMVRSKAYLFSGVEIRWKSAIPDGDTPQEAVFHFPGGLGDYL AEQLSGASTYAERPFAGKVGFQEKFGVPGSVEWAINWTPARDGFIQSYCN TVPTPEGGTHESGFWSAILKGIRAYGELVKNRKADQITRDDMLAGGSALI SVFIREPQFVGQTKDRLATEEASKLVENAVRDHFDNWLAANTKSAGAILD FLVLRAEERLRRRQEKETQRKSATKKLRLPGKLVDCSATARDGTELFIVE GDSAGGSAKMARDRATQALLPLRGKILNVLGAASGKMGANAEINDLCQAL GTGMGTRFNIDELRYDKIIIMTDADVDGAHIASLLMTFFFTQMRPLIDRG HLYLACPPLYRLTQGAKRLYVADDVEKELWMAKGLGGKGKIDVQRFKGLG EMDAKDLKDTTMNPATRKLIRVSIDEDEPGETGDLVERLMGKKPELRFQY IQENARFVEELDV >RSP_0560 priA, Probable pimosomal protein N' MTGRFAEGARVGVLTTEPLGRVLDYRAPEGGCDLGDYVVVPLGPRRVMGV VWGPGEGGFDAAKLRGIERVLDAAPMREEMRLFLARAADYTLTPLPAMLR LASRAPGLGEPPAVRRVYRASGHEPARLTEPRQRVLDALAAYGGAPVTLA ELSAEAGVTGSVVKGLVKAGAILEEEAPRDLPYPPLDPGAAPVRLEGDQV AAAEALVAAVAADSYSTTLLKGVTGSGKTEVYLEAVAECLRRGRQALVLL PEIALTSEFLARVEARFGARPAEWHSGVTATERRRLWRMVSEGQAQFVAG ARSALFLPFRDLGLVVVDEEHDTSYKQEEGALYNARDMAVLRASICGCPA VLASATPSLESWVNAAQGRYARLDLGARFGAAELPEMHAIDLRPEKLPAN RWISEALARSVEARIARGEQSLLFLNRRGYAPVTICRACGHQIGCDHCDA RMVEHRFQKRLVCHQCGATKPMPEACPSCGVEGRMAPVGPGVERLAEEVA ERFPQARVAVLSSDLFGSARAVKEQIAAIAEGGADIIIGTQIVAKGHNFP LLTLVGVIDADLGLQGSDLRAAERTFQLVRQVAGRAGRSASRRGVALVQT CQPEHPVIRAILGGDEEAFWRAEAEERRVAGMPPYGRLAGIILSSPDVAQ VFETGAELARADGPLRRIGAQVFGPAPAPIARVRGRHRVRLLVKAGKGAP LQAALAEWIAQVKLPANLRLAVDIDPQSFL >RSP_1171 radC, DNA repair protein MCATRAFQEASLPLFPGDEDEALAEPLGARLPSYIADHRKRLRARFQEGG AAAMPDYELLELLLFRSIPRQDVKPLARRLIDRFGDLNRVVTADMARLLD VEGVGEAVAQDLKILEAVAQRMARARVMNQPVLTSWAALLDYCHTTMAHR ATEQFRVLYLDRKNVLIADEEQARGTVDHVPVYPREVVKRALELNASALI LVHNHPSGDPTPSDQDVAMTAQIQEAASTLGIVLHDHLVIGRGREVSFRG QGYL >RSP_0452 recA, Recombinase A, DNA recombination protein MATANLLDLNGRREMDKAKALESALAQIERQFGKGSIMKLGANSPVMEIE ATSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLHVVAEEQKKGG VCAFVDAEHALDPQYAKKLGVNLDELLISQPDTGEQALEIVDTLVRSGAV NLIVVDSVAALTPKSEIEGDMGDMQMGSQARLMSQAMRKLTASIGRSNCM VIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDNVI GNTTKVKVVKNKVAPPFREVEFDIMYGEGISKTGELVDLGVKAGVVEKSG SWYSYGDERIGQGRENAKAFLRANPTVAGDIEDRIRASHGLDFSTGEDGK GDDLVDM >RSP_1344 recF, RecF protein MKGEGMRGLAVTSLALSHFRSHRAARMGFDGRPVAFVGSNGAGKTNLLEA ISLLSPGRGLRRAAADEIARRPEALGWKVAAAVTGLHSGHEIETWAEGGG ARQVRVDGKAATQVMLGRLLRIVWLVPAMDRLWTEAAEGRRRFLDRVAMS FAPHHAEAVLDYEKAMRERNRLLKEQVADAHWHGALEGRMAEAARAIRAH RDEAVARLMAAQGAAETAFPRAMLSVASDDPEDLGAAWAEGRRRDMAAGR TLVGPHRADLTAIYAAKDVPAAQCSTGEQKALLISLILANARALAEDLGA APVLLLDEVAAHLDEGRRAALFDEICALGAQAFMTGTGPELFTALGDRAQ RIEVTEAQGLSQTRDIGP >RSP_2623N recG, Haem peroxidase MSRPEILFPLFADLETLEGVGPKSAKAFAGLGVTRPKDLLFLLPHSAVDR SRRSSIRDVLPPVTATVEVTVGAHYPSRRKGGPYRIAVRDAEAEFTLVFF HARGDYLMKLLPPGEQRIVSGRIEVFDGMAQMVHPDHVLPPEEAAALPAC EPVYPLTAGLTQKLVAKAASAALLRLPELAEWIDPGLKAREGWPDWAAAV RAAHAPEAPAEVTPTAAARRRLAYDELFAHQLTLTLARASRRRGRGVASV GTGALQRRVLESLPFAPTAAQTRAVAEIAADMAAPQRMNRLLQGDVGAGK TLVAFLALAIAVEAGGQGVMMAPTEILARQHLASLAPMAEAAGIRLALLT GRDKGAERAAKLAALAAGEIGVLVGTHAVFQKDVIFHDLRLAIVDEQHRF GVAQRMELGAKGAAADVLVMTATPIPRSLALASYGDMDVSVLDEKPPGRT PVKTALVSCERIDEVVASLAHAVAEGRQAYWVCPLVEDSEAVDYASAEAR FQHLRAALGEGTVGLVHGQMPPAEKDAAMARFVAGETRVLVATTVIEVGV NVPNASIMVIERAEIFGLAQLHQLRGRVGRGAAQSTCLLLYQAPLAESGQ RRLTILRETEDGFRIAEEDLAIRGAGDLIGTAQSGLPRFRIADLERQSAL MEVAQSDARKLLHDDPTLASPRGEAARLLLWLLDQDRAIRLLSVG >RSP_2118 recN, DNA repair protein RecN MLRSLDIRDMLIIDRLSLAFQPGLNVLTGETGAGKSILLDSLGFVLGWRG RAELVRAGADKGEVTAVFDLPPGHAARAVLDEAGIEAEDELILRRVNFAD GRKTAWVNDRRVSGEVLRGLSDRLVELHGQHDDRGLLNPRGHRQMLDTFA GLDLSACRRAWTALGTARRTLLAAEEALAAVRAEEDFLRHAVAELDKLDP QPGEEALLDTRRREMQGAEKIRDDIARAHRALSAEGAETLLVDALRWLET ASDRAGNRLEAPLAALSRALLELGEAQDGVEACLADLDFDPRDLEALEER LFAIRALARKHSVLPDELGTFAEELRGRLAALDGGTKQIDALRRALAEAE AAWEAEAAILSEARRGAAGRLDAAMAAELAPLKMERAVFETQVTEADPGP EGRDAVAFTVATNPGAPAGPLNRIASGGELSRFLLALKVCLTGDSPGLTL IFDEIDRGVGGATADAVGRRLKALAEGAQVLVVTHSPQVAALGAHHWRVE KRVAHGMTTSTVSPLGAGDRIEEIARMLAGDTITDAAREAARALLD >RSP_1359 recQ, DEAD/DEAH box helicase MPTPRELLHSIFGFSDFRPGQEEIVEAVRQGQNTLAIMPTGGGKSLCYQL PALSREGVTLVVSPLIALMRDQVRSLREAGVEAGALTSGNTEAETDEVFR ALDEGRIKLLYMAPERLASAGAFALLRRVGVGLIAVDEAHCVSQWGHDFR PDYLRIGELRRALDVPLAAFTATADAETQEEIVARLFDGVAPATFLRGFD RPNIHLAFAVKASPRQQILAFAAARKGRSGIVYCATRAKTETLAQALREA GHSACHYHGGMEAHDRRAVEIRFQQEDGLIVVATVAFGMGIDKPDIRWVA HADLPKSIEGYYQEIGRAGRDGAPAETLTLYGPDDIRLRRSQIDEGLAPP DRKAADHARLNALLGLAEATACRRQVLLGYFGESSEPCGTCDLCDRPAEL FDATEAVRKALSAILRTGEWFGTGHLIDILTGTATQKVRDRGHDGLPTFS VGRDLSRPAWEAVFRQMMGRDLVRPDPERHGALKMTEAARPILRGEEQIT LRRDTVKSAAARPQARALISEEDAPLLSALKAKRRALAEAAGVPAYVIFT DRTLIEMAERRPQTLDEMAGITGVGAKKLESYGATFLAVVTGEAEAAMHP QRRRLAGRGAAELFDRLAEAQVALMRGEDGTGKPLSLPQSTLRRIAEARP TTLADLDRVGDLGAQKIERFGEAFLDVLREA >RSP_0712 recR, recombination protein RecR MAEAPGDIERLIELMARLPGLGPRSARRAVLLMLKKRGAVMAPLAQAMAE VATSARDCVRCGNITNADLCGICRDERRATGELCVVEDVADLWALERAGA FRGRYHVLGGVLSALDSVGPEELRIPRLAERVREEGISEVILALNATVDG QTTAHYIADVLEPSGVQVTSLAQGVPIGGELDYLDDGTIGAALRARRRF >RSP_2536 rhlE, ATP-dependent helicase, DEAD-box MLMTKFSDLALDPRVLKAVQEAGYETPTPIQAQAIPHALEGKDVLGIAQT GTGKTASFTLPMITILGKGRARARMPRSLVLCPTRELAAQVAENFDIYAK HSKLSKALLIGGVSFTEQDKLIDRGVDVLIATPGRLLDHFERGKLLLTGV QIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTLFYSATMAPEIERITNT FLTGAVKIEVARQATTSETIEQKLIQVTPTRKERSFADKRAVLRALIRAE GEACTNAIIFCNRKMDVDVVAKSLKQHGFNASPIHGDLEQSQRMKTLDGF RDGSLHLLVASDVAARGLDIPAVSHVFNFDVPTHPEDYVHRIGRTGRAGR KGKAYTIAVPSDEKHVTAIESLVKQAIPRGELPEGFSLEDRPDRPERDNA RGERSERPARGRRGRDRDRREEPRVEAVEAPAAAVPEVREVREERPPRRE ERRDERREGGNNRRERDRDRREERVVGMGDHVPDFLLRSFRIPSLTASDE EEPVPEAAEEMLAGDGEA >RSP_0819 rhlE2, DEAD/DEAH box helicase MPAHRKRPMADFSTLGLSERLMQGLAKAQFTQPTPIQVEAIPYVMQGRDL MGLAQTGTGKTLAFGLPLLHRLLGVGHPPPPRTIRALILAPTRELVTQIA TNLELFTKGTPVKVVTITGGASINRQTERLARGADIMVATPGRLIDLLDR NAVVLDHTGYLVLDEADQMLDMGFIHSLRKIARFLPLKRQTLLFSATMPK LIEELAHTYLREPVKVQVAPPGKPVEKIAQGVHFTPQGDKAKLLESYLQK HPGEQALVFGRTKHGSEKLMKLLVSWGFKAGSIHGNKSQNQRDRTLTEFR DGSLDVLVATDVAARGIDIPGVRHVYNYDMPNVPENYVHRIGRTARAGAE GSAVAFVAPAEMEEFRAVEKLLKQPIPVIGGAPWAADIVAAAPRPGQKPR QGGRPKTGAKPQGKPQAKAQPKPQGAAKAHPRAGRPAGAPGGHAAPKRAA RGPRRGDAARG >RSP_0867 rnhA, ribonuclease H MARTRPAARPHRLVRRRGFGYPRPMPDLYAYTDGACSGNPGPGGWGVLML AREGEAVVKERTLQGGEVLTTNNRMELMAAISALEALTRPTEITIVTDSA YVKNGVTTWIHGWKRNGWKTADKKPVKNAELWERLDAAQQRHKVVWRWIK GHSGHAENERADELARAGMAPFKTR >RSP_1470 rnhB, ribonuclease HII MEITCPDWTHETAALAEGFTCVVGVDEVGRGPLAGPVTAAAVRLFPGRIP EGLNDSKKLTAPRREMLAAEIHTVAEVSIAHASVEEIDRLNILQASHLAM GRALAGLPSRPDFALIDGHMVPKGLGHRCRAIVKGDALCLSIAAASIVAK VARDRIMVDLEQQHPGYGWRTNAGYGTKDHLQALLNLGPTPHHRRSFKPV HNILYQEASISP >RSP_0555 ruvA, Holliday junction DNA helicase ruvA MIGKVAGILDFRGPDHVLIDVRGVGYIVYVSDRTLASMPGLGEGVALYTE LVVREDLLQLFGFPTMIEKEWHRLLMTVQGVGAKAGMAILGALGAEGTAR AITLGDARSIQAAPGIGPKIAQRVVLELKSKAPALMAMGGGTAALAPSEP PEPEPGTSSGSRRKTRAPEPPRPSHTADALSALANLGYQPTDAAQAVAQA AGESPDADTAALIRAALKLLAPKS >RSP_0553 ruvB, Holiday junction DNA helicase RuvB MTSSDPTLRPERLPEDMDRALRPQSLEEFVGQAEARANLRVFIESARMRG EAMDHTLFHGPPGLGKTTLAQIMARELGVGFRMTSGPVLAKPGDLAAILT NLEPRDVLFIDEIHRLSPVVEEVLYPALEDFALDLVIGEGPAARTVRIDL QPFTLVGATTRLGLLTTPLRDRFGIPTRLQFYTEDELDLIVARGARMMGV DSDPEGTREIARRARGTPRIAGRLLRRVVDFALVEGDGRLTQAIADRALT RLGVDHLGLDLGDRRYIGLIAENYGGGPVGIETIAAALSESRDAVEEVIE PYLLQQGLIQRTPRGRMLAHKAWRHMGIEPPKGPGQSDLFG >RSP_0556 ruvC, Holliday junction nuclease RuvC MRVLGIDPGLRNMGWGVIDVSGTRLAHVANGICHSDSGDLAHRLLSLHGQ LTDVLARFQPDTAAVEHTFVNKDGVATLKLGQARGIALLVPAQAGLAVGE YAPNAVKKTVVGVGHAAKEQIQHMVRLHLPGVHLAGPDAADALAVAICHA HHVQSSGRLEAALARAAR >RSP_2178 topA, DNA topoisomerase I MAVVVVESPAKAKTINKYLGSDYTVLASYGHVRDLPPKDGSVDPEHEFAM TWEVAADSKKHVRAIADALKTDDTLILATDPDREGEAISWHLQEALASSL KKGKTVRRVTFNAITKSAVTEAMKAPREVDTALVEAYLARRALDYLVGFT LSPVLWRKLPGAKSAGRVQSVCLRLIVEREMEIEAFRAREFWTVSAVLAT PRGQEFEARLTVLGGKKLEKFDLATSEAAELAVQAVTSRPLKVASVEAKP ASRNPSAPFMTSTLQQEASRKFGMGAKQCMSAAQRLYEAGHITYMRTDGI DMAPEAVMAARDEIKRRFGANYVPDSPRMYKNKAKNAQEAHECIRPTDMS ASPEKLGLTDTDQRKLYELIWKRTLASQMAAARLERTTVEIASPDGQVGL RATGQVVLFDGFLKVYEEGRDDRSDGDEDDEGRLPQIMANEAVEKKSITP EQHHTQPPPRYTEATLVKRMEELGIGRPSTYASIVSTIQDREYVRKDKNR LIPEDKGRLVTAFLANFFRKYVEYDFTADLEGELDDVSAGERNYKEVLAR FWRDFSAAVAETADLRIGEVLDKLDEFLAPHLYPPRPDGSDPRICPTCGS GRLHLKTARGGGAFIGCGNYPDCRYTRPISVTGDEENAISPDGKLLGHDE DGAPISLRSGRFGPYVQKGEVTAEVPKPPRASLPKGWAPDTVDLDRALML LNLPRLVGSHPEDGQPVEAAIGRYGPYVKHGSTYANLPDVEEVFTIGMNR AVEVLAQKAAGRRGASAPAQPIKELGEHPDGGLLAVMPGRYGPYVKWGKV NATIPKGIEPEAITLEEALALVAEKAGKAPKKKAPARKAKAEEGAPKKAA PKKAAAKTTKTAAKKPAAAKSTAKKKAAPDTDAA >RSP_2146 trgB, Tellurite resistance protein MRVFLCGPLASDGLRQRVLGSAPDGVPARLADHALGAAGATVSPMPAPGA SVAGLVMELGAEAGARLLHYQTATGHEARTLAVAGAPALVFFAPPEGLEP WDEAAWGALWGPIVVATAGDVMALWPEVPAERIARRYRLMLVQGASRVRA AADPGPARRRHAAQPGDVRIVRRSQPYANFFAVEEYDLSFRSFGGGMSPT LNRAVFISGDAVTVVPYDPVRDRVLLIEQFRPGPLGRGDAQPWLLEPIAG RVDPGETPEAAARREAVEEAGLDLGALLPVASYYPTPAAKAEYLYSYVAL AQLDDGIEGIFGMEGEGEDIRGHLMSFDEMMALIRSGEICNGPLLLTALW LDRERPRLRGE >RSP_2966 uvrA, ABC excinuclease subunit A MAEQKFISVRGAREHNLKGIDVDIPRDQLVVITGLSGSGKSSLAFDTIYA EGQRRYVESLSAYARQFLDMMGKPDVDHISGLSPAISIEQKTTSKNPRST VGTVTEIYDYMRLLWARVGTPYSPATGLPIAAQQVQDMVDAVMAMPEGAR GYLLAPIVRDRKGEYKKEFIELRKQGFQRVKVNGTFHELEEPPTLDKKFR HDIDVVVDRIVVREGIETRLADSFRTALNLADGIAIFESAPAEGEPVRTT FSEKFACPVSGFTIPEIEPRLFSFNAPFGACPECDGLGMELFFDERLVVP DQGLTLKQGAIAPWAKSKSPYYTQTIEALARHYGFDPKKKWKDLPFNVQS VFLRGSGEEEITFRYDEGGRIYQVSRSFEGVIPNMERRYRETDSAWVREE FERYQNNRPCHVCGGYRLKPEALAVKIGGLHIGQVVQMSIKEAFAWIETV PGHLTAQKNEIARAILKEIRERLGFLVNVGLDYLSMSRAAGTLSGGESQR IRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLTTLKNLRDQGNSVLVV EHDEDAIREADYVFDVGPGAGVHGGQVVAHGTPAEIAADPASLTGQYLSG TREISVPAERRKGNGKALTVVKASGNNLHDVTVDFPLGKFVCVTGVSGGG KSTLTIETLYKTAAMRLNGARETPAPCETIKGFEQLDKVIDIDQRPIGRT PRSNPATYTGAFTPIRDWFAGLPESKARGYQPGRFSFNVKGGRCEACQGD GVIKIEMHFLPDVYVTCETCKGHRYNRETLEIRFKGKSIADVLEMTVEDA QEFFQAVPSIREKMDALMRVGLGYIKVGQQATTLSGGEAQRVKLSKELSR RATGRTLYILDEPTTGLHFEDVKKLLEVLHELVEQGNTVVVIEHNLDVVK TADWIIDIGPEGGDGGGKIVAEGTPEEVAKVEASHTGRYLRDMLKPRRLA AE >RSP_2083 uvrB, Putative Excinuclease subunit B MPHNNTNLPMHRPEVLTRPKLEGGRRFEMKTPFQPAGDQPTAIAELAAGV QGGEQNQVLLGATGTGKTFTMAKIIEETQRPAIILAPNKTLAAQLYGEFK GFFPENAVEYFVSYYDYYQPEAYVARSDTYIEKESQINEQIDRMRHSATR ALLERDDVIIVASVSCIYGIGSVETYSAMTQDLIVGESYDQRQVIAELVA QQYRRNDQAFQRGSFRVRGDSLEVWPAHLEDRAWRFSFFGEELESIVEFD PLTGAKTDSFKQIRIYANSHYVTPRPTMQQAIQGIKRELRQRLDQLVNEG KLLEAQRLEQRTNFDLEMLEATGVCNGIENYSRYLTGRAPGEPPPTLFEF IPDNAIVFADESHVTVPQIGGMYRGDYRRKFTLAEHGFRLPSCMDNRPLK FEEWDAMRPQSVFVSATPAAWELEQAGGVFAEQVIRPTGLLDPVVEIRPV EMQVDDLLDEIRRVAAAGLRVLVTVLTKRMAEDLTEYFHEQGIRIRYMHS DIDTIERIEILRDLRLGAFDVLVGINLLREGLDIPECGLVAILDADKEGF LRSETSLIQTIGRAARNADGRVIMYADRITGSMERALRETERRREKQIAY NIEHGITPQTVRKNVEDVLAGLWQGDTDQSRVTAKVDKPMVGANLAAHLD GLRVSMRKAAENLEFEEAARLRDEIKRLEAVELAISDDPLARQTAVEEAA EAAVKSSGRSTAGRAGQRGGNKRRRGH >RSP_1074 uvrC, Excinuclease ABC, C subunit MQDNETDGRDVPTGHAVIQGYLKTLDGSPGVYRMLDAQSQVLYVGKARNL RARVSNYARPSGHSGRIARMIRETASMMFLTTRTETEALLLEQNLIKQLK PRYNVLLRDDKSFPNILIAKDHPFPMLKKHRGKKSEKGSYFGPFASAGAV NRTLNQLQRVFLLRTCSDATFESRTRPCLLFQIKRCSAPCVGRVPAEDYA ELIGDAERFLQGRTTKVQANLAEQMQAASEAMEFERAAALRDRIKALTQV QSSQGINPRGVAEADVIAVHLEGGQACVQVFFIRANQSWGNRDFFPRTGA GAEEPEILEAFLAQFYDDKEPPRMILLSHPVDNPDLVGQLLSERAGRKVT LGVPQRGEKAELVENAARNARESLARRMAESATQNRLLAGLAEAFELDAA PKRIEVYDNSHIQGTNAVGGMIVAGPEGFLKSQYRKFNIRGAAGAQGDDF GMMKEVLTRRFERLLKEDPERKTDAWPDLLLIDGGAGQVSAVQEILQELG VDDVPFIGVAKGIDRDAGKEEFHRPGEPPFALRMNDPVLYFVQRLRDEAH RWAIGAHRAKRAKAVSATPLDEIPGVGAARKRALLAHFGSAKAVARAGVP DLCAVEGISETMAQSIHDYFHGS >RSP_2815 xerD, Probable integrase/recombinase XerD MEAAGMERWISAFLEAQAAELDAARNTRLAYGRDLKDYATWLGRRSEDFL TATRDTVEAYLTFCEAQGLSSATRARRLSSIRQLYRFGHEEGWRADNPAI RISGPGRSKRLPKTLEIEEVDRLLEAARDKGRRAEDQIRNRCLLELLYAT GMRVSEMVGLPVAAARGNPRMILVRGKGGKERMVPLSPPAREALADWLRA RDAAEAQGQKAGRPASRFLFPGSGAAGHLTREYFYVLVKQIAVLAGVDPA KVTPHTLRHAFATHLLAGGADLRVIQTLLGHADLSTTEIYTHVLDAHLKE LVLKHHPLARE >RSP_1845 xseA, Exonuclease VII, large subunit MSDLFEDPAPSRNTPEFTVSELSGAVKRVIEGEFGLVRVRGEIGRVSRPA SGHLYFDLKDDRAVMAAICWKGQAGRLSVRPEEGMEVVATGRMTTFPGQS KYQIIVEDMAPAGAGALMAMLEKRRAALAAEGLFDAARKHPLPFLPRVIG VVTSPSGAVIRDILHRLRDRFPSHVLIWPVAVQGEKCAPEVAAAIRGFNA LPEGGPIPRPDLLIVARGGGSLEDLWGFNEEIVVRAAAESRIPLISAVGH ETDTTLIDHAADRRAPTPTAAAEMAVPVRLELLAGLDGQVARLSRCAAET IRRRDQRLRDLARALPRLESLVAGPSQRFDLWSGRLSGALGQSVAARRAR LEPLGAHLRPRLLADLVARQKDRLGDRTRSLETCLGRRAERARDRFDALS ARLAPAFARLIAETERATRRDAATLGTLAARLDAAPEARLARLSDRLEAL DRLRQTLGYRETLKRGYAVVRADGAVLTTKAEAGAAAMLEIEFQDGRLSV GRGKTRKPKEEPPAQGSLL >RSP_1136 xseB, exonuclease VII small subunit MTEKAVAEMTFEEAMAALEAVVTALEKGDVPLEDSIRLYERGSALKAHCA QKLKDAEDKVELIRAAEGRATAAVPAEGL >RSP_2657 xthA, Exodeoxyribonuclease III MKIATFNINGVKARLEALLAWLEAAEPDVVLLQEIKSVDEGFPRAAFEDK GWHLETHGQKGFNGVAILSRLPLEDVVRGLPGDPEDVQARWIEATVVGER AVRVCGLYLPNGNPAPGPKYDYKLGWMERMKARAAELLATEEPVVLAGDY NVIPQAEDAARPEVWVTDALFLPESRAAFRRIVNLGYTEAFRARTFGPGH YSFWDYQAGAWEKNNGIRIDHLLLSPQAADLMTDVRIDREVRSGEKPSDH VPVWVELAA >RSP_0848 xthA1, Exodeoxyribonuclease III MTFTLATWNINSVRLREALVSRLLTEEMPDILCLQECKSPVEKMPLEAFR ALGYHWCVARGQKSYNGVAILSKLPLVDAGDHDFADLGHARHVSAALENG VTIHNCYVPAGGDIPDREQNVKFGQKLDYLTRMRDWCRADTPKKAILVGD LNIAPREDDVWNHKSLLKIVSHTPIEVDHLNALMEAGAWIDVTRKDLPEG RLYSWWSYRSPDWEAADKGRRLDHIWATPDIVNAAHGSRILKAARGWLQP SDHAPVFATFDL >RSP_2260 ydjG, hypothetical protein MQDVRHWPCESCGADLRFAPGQTRLVCDHCGHVQEIPATAPTDRRGMGEL DLHAALADRLPASASEQVRTTPCPSCGALVEFEGATHATQCPFCATPVVA GTGETRLLKPQAVIPFRLTEREARQAMTDWLGRLWFAPNGLVQYARKGRA LSGLYVPYWTFDAATRSRYTGQRGDAYYTTRTVTVEVNGRPQRRTERVRQ IRWTPVSGRVAREFDDVLVLASQSLPRHYTEALEPWDLSALEPYRADWLA GFTAEGYTVGLPEGWSRAQEIMARTIRGDVARDIGGDEQRVGQVETAYDR ETFKHVLLPVWMAAYRYGGKSYRFVVNGQTGRVQGERPWSAWKIAFAVLL GLIAAGIAAYISQAR