Gene list
Applied filters:
COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome
Number of genes found: 61
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# Tropheryma whipplei TW08/27, TW08/27 >TW109 putative NUDIX hydrolase MHYRVLESTLLHKGAVWDVVQEKLDYRGETISREFVSHPGAVGVLALNDK NEALLIRQYRHPIRTREWEIPAGMLDLSGESPLDAAKRELSEEVDMCAQT WHTLIDFTLTPGGSNEVMRVYLARELRASQAKFNRKSEEADMEIAWIPME DLLFSVLTRRVQNPVLMLAALAAHEGLQVQWKYLRDADEPWPVYERLKGL IS >TW446 putative TatD-family DNase MPLTLPSPVYDSHTHLAPGTDYKDQLDRAEAVNVIGVLQVGTDVNTSHAS VELAMQDQRILAAVAIHPNDAADIYKKANDATHRVEGQPHTECEKCIPPA KALEKSLTQIANLAGSKRVRAIGETGLDYFRTQSDLYRAAQRFSFDAHIQ IAKEHNLALQIHDRDAHRDVIECLLRAGAPDRTIFHCFSGDEQMLEICIK NGWYMSCSGIITFKNAREMQKIFAKVPKELLLVETDAPFLTPSPFRGFMN SSYMLAHTVRALAEIRQENIDQLCTQLSRNTCEIFGKW >TW381 putative secreted protein MRLHLSQSRFKKLCVCILVTSLAFFHTTYVVADESELPSWSEIEKAKTDI REKQKQIHAINLALNRLSQRLNEASDRVLKLSADYTVGENNLEIIDNSLS NLNLQRRNAQKSIVESSKQINRVITGMFQGSLIAFDLDAFKVPDGLLYGL TVMNRYTDNLSNFRNKMFASYNSFSYIQRQIEETRLLQKKLIVSVDAKRA EAVKSVEQLKLDMARKRDLSTRLLSMLASLKGTTLAKEKQLKQEEERAAI AKTEPARSTGINTKIIEIDSNTSKTGGRTRKNKNKKDDSNPLYLLAISGL PKREEAKRYAKKRVFDRGWNEKEWKCLEILWTRESTWRWNAYNLSSGAYG IPQALPGSKMANIADDWMTNQNTQIEWGLSYITSRYKTPCKAWEFWQKSN WY >TW090 ATP-dependent DNA helicase MTIPADLLKGLNPQQVEGVCYRGPTLLISAGAGSGKTKVLTHRIAGFLAT GEASCDQILAITFTNKAASEMRHRTGDLVGLSVRDMQISTFHSVCVRILR ECVGHLGKAKNFTIYDAADQRAIIKQICQSTDTFGLTASMVASQIGLLKN QMHTPDTYSRCLASNSTNGNSVTSITLQREQFILHVFRRYQEILKEANAF DFDDLISETVFLLQKSPEISAMYRNRWKYLLVDEYQDTNHAQYRLILELT KGDKSDMSLTAVGDSDQSIYAFRGADIANIVNFENDFPDCHTILLEQNYR SCQNILLAANALISNNQNRKDKNLWSELGAGEKVVAYCASSAEEEGRFVA DRVRHLVDQGESLSDIAVFYRSNTQSRAIEESLIRQSIPYRVVGGTKFYE RAEIKDILAYLTVIVNPDDTLALRRILNVPKRGVGTVSENRLVEFASARG ITLMQALSRIDEINIQPSAKSALRDLFYLLNRFAGSSMPANELLDDLLKA TDLLSRFNNTDDPQNEARKINIGDFVDSVEDFAKENPGGTLSDFMTNIAL MTSYDQSDDAPGQITLMTLHMAKGLEFDFVFLTGLEEGILPHEMSLKEKN GIEEERRLAYVGMTRAKKVLHLSFSSYRKRYTDGVRLPSRFWDEIPQHLL RWHSRFTHKRFTGPLYGFTARPAGESRQSVHVLKDRYPRESFSISDSVKH SVFGVGTVVDVLGLGPKQIIVVEFADKRRSLLASIAPIVKCKQ >TW315 putative DNA recombinase MCPCGDTLNEGFCCLIREFIIYLENVRGYSSHTCRAYYRDLMCFGEYIIT HDSRENVKSLRDVSIQDLRSWLYSQSHKSARSIRRAVSSLKSFFRWAYDR KITAQNTAAALRAPKSTSQLPSVLSEKRIAQILGNFSHTVPVIQLRNTAI FELLYASAIRVSELVSLDLDSIDHDLCTVRVDGKNGKQRVVLFGKPASHA LDLYLNMRHTLLSDRSSKALFLGSRGRRINPRVVYRLVSELLEMPKGPRG PHVLRHSAATHMLDNGADLRSLQEILGHSSLSTTQIYTHVSLERLISSYN QAHPRA >TW788 putative serine/threonine-protein kinase MSFDAGTVLGKRYRLIARIAIGGMGEVWKAHDEVIQRHIAIKILKEEYVG SRDFIERFRTEARHAAIVNHVGIANIFDYGEEKGIAYLVMELVDGEPLSA VLERERMLPVEEVLRIVVQISRALQAAHSAGLVHRDIKPGNILISESGLV KITDFGIARIGDQVPLTTTGQVMGTVHYLSPEQAAGKKADAMTDVYSLGV VAYECLTGKRPFVGDSQVAIAVAHVGDTPANLPKDIPRPVARLVLGCLEK QPQRRPKSAGNLADAASALLKDDLAEAARAYPPLAASGEQNGSGQVLDNQ TKAISTTTSLYSKLGQFDTRLLGQTMEFNGGSESKPARGKWVLPVVGTIT ALAVIVGGGALAIIVTGNRGGLTETKTGVSTHDVTQTVASYIPTIVSPNT RPAGNTVVIDPGKYVGLSFDGVQKALFALGVGIKRLSAGPAPSADKAGLV ESISPTGTLTIPAVIDVKVYGPPVMTPPAFAPRLIGTPKIGGSVYVSWPV YTSCPAGSQVTLYRISVDGAVLQGPGTVGADTTQVELLLIQNEASVKYSA DCSVPGKNQTFNSGFSDVLKISTNGSHTPSIASSG >TW101 conserved hypothetical protein (putative ATP-binding) MQLKQVTITNYTPISDITLEVRRHLVLVGANDSGKTSILTCLDLLLSATT PMLYSHFQAWHFRDATKPIIISVDINNLDDKIQIAFGINNNRISEIKLTL SAFLDESQMLTIKREVLYNNTTKPVADSQLTGIGWELFDAGEVPCTASQY KTVLSGVMESTNLRQHGLSSLTQSFREQIEASPFLENLRERLAEKLIKTM PGNLNKDAVHLVPKDDIGTQVLGNIRVQVKRQNKSPHMIDCLDGMRSLYA VAIYDVLSRDASVVGIDEPETHLHPTIQRSLARVLQEESNQKIIATHSAD IVGAFSPEHVAVVQPNGQVVQPARGFLGEDERIIARWWVHGRLEPLTARR IVAVEGISDRIILESAAEVTGRNLDRLGIALIEANGSGDMWPIYKLFGPK GFRIPISLLIDSDAVQHTSVRLGIPKNEFTQNSIYVSKRDLEDEYTRAIG ANTLWNALRESKLFAHSELRGGGKTEQAVAAFCRKNSSNKVRAALVVSSL LNEQLAIAIESVNSLLNAIELPR >TW314 putative DNA processing protein MKPLCFSEELSEDQAVDYFARAAWSLISEPGDRIAGRLISCMTAPRALGW LLGNISLPFTLDEFESQQLEKHRSVWKMRADYQQLLKSFQAAHHTGAKLV VTDKYNKLQDEKPHILWVKGNSPSILLDTSQKVSIVGTRCCSYYGKSVTA DISYSLARKNYVIVSGGALGIDGTAHMSALSAGKSTIVFFAGGVDWIYPR GNEALFSKICESGIIVSEMPCGSRPTKWRFLRRNRLIAAIPSAVVVTEAA ARSGSISTAYHAADVQVPVGAVPGPINSPLSEGCNRLIRDRIAESVTCAD DVVGLFAPLVVSPIQKDSFGLQASRIRVIDALSKKYDRDISEICRLSGML FDDVSSLMRLLELSGQVIRSGSGWRLSGRLR >TW243 putative ATP-dependent DNA helicase subunit MNMSLRDSRHMCSILNLHAPTEEQRAIIESPLENALVIAGAGSGKTETLV LRLLWLIASGKLKPESIMGLTFTRKAAGELASRLQKSLAILNSYTGDVLS PEIDVLTYNSFANSIYQDNALLLDHPVPYTAIEDSEAQLIARRLLVEHGL DEDEPSETIDNLASSLIKLDDAIVDNLLDLGELNQFASEFIEFVGAFDAP VAKSDVFRAKRLIALSKLIPALKDEKKLRGRISYSEQVAFALEVCRQTHV LAEFQEKIAYVVLDEYQDTSPIQVEFLKTIFGNRCRVLAVGDPRQAIFGF RGASVANIANFARDFVSNKQYELSISWRNDKNILDLANHISPKIRPLHPR PEANDGSTSLEVYTDPEQEVHEGALWLNSVVEKGTAAVLTRTRSRLISVS RVLDEIGVSYTRADVNIFYEPGVVDILSCMRIISGVNENLSFLRLITGPR WQVGISDLHALRGYIAVGKKNLDRISLLEAVNRINIQKTPMSCEGKKRLE DFLEFFRKIKGLSFLSPLELAYLIEESLNLDIEVQMSHRGRENLDALYEL IASFRGDNLSEMLAWFDSLEEEDAFRGPIKQSCPGQVELFTVHSAKGLEW DWVLLPFLDDFPAKSREKSGWLSKTGLLPFCLRLDRESLPEFYFHKCSDS KEYRAARRQYEDDVLQHQIREERKLLYVAVTRARQGLRISASARQKPGQF LREISEFLQTDLPQAVHNNPKKRVGYWPLDSLGARRKRVKLAAAAVHNRS IEESEESLKKEPLKALIAGMLKELDISVDKPEKRISATALSKKDPNVFLL PQPPIKNAWLGVAFHAWIENYYSTYSDMLFHENSADEYGISGPVFEQSQR FSPELDQLRHNFMQSEWSYKKPIAVELSLEWLIGDVIVPCTIDAVFFDGD RYTILDWKSGLSSNQYRIQLSLYRLAFAEWKGVNPDKVEAKIYFAADNRT IKVRPYTVDELGKMPGFLSDLFS >TW656 conserved hypothetical protein MRIIAGFAKSIKLEAPTRGIRPTTERVRESLMSSLQARMLLEDAVVIDCF AGTGALGLEAVSRGARVLHLIDKSAKAFKACKKNADRVKAFCEHAQIHVH KANVTTFLKSSLQHTTRASLVFLDPPYDYPPHKLEEVFIHLLHWINEDTV VILETDRANGTPPVGDALKVTEQKQYGHSVVWWMSQP >TW704 putative exodeoxyribonuclease MLEVASVNVNGIRAAHRKGMDLWLKERNPDILTIQEVRAQESDLRGILPN WNISFDPCSIPGRAGVAIASKFPPIAVRTKLRANKILNPETASEEPLNTS GRWIEADYDIAGKLVTVVSCYVYAGEARTIKQEEKMAFLQAVEKRMKSLV KEEFALVTGDFNVGHTTLDIKNWRGNLDKSGFLPEERAYLDALVGNESDK EYNAGAGQGWIDVVRKIKGGIDGPYTWWSMRGNAFDNDTGWRIDYQFATQ RLKALWVAIDRQKSYAQRWTDHAPVVVKYDF >TW783 putative DNA methylase MRNGGTCWSPDGDNLVVQGNNIDFLHKLPDDSFQLIYIDPPFNTGKRQTR QCSKMVRSPYGEQIGFCGNRYKILSESRTEYADMFDDYLGFLKPRLHEAW RLLKPEGMFYLHLDYREVHYAKILLDSIFGRDSFINEIIWAYDYGAKTKR RWPAKHDNILVYAKDPRKYLFDSENVDREPYMAPGLVTPDKAKRGKLPTD VWWHTIVSPTGKEKTGYPTQKPEGVLRRIIQASSRPNDWVLDFFAGSGTT GIVAGKLGRKFVLIDNSPQAVKIMKLRIDRSLSENPVRYTKLY >TW312 conserved hypothetical protein MTHDVSKYALGRIAEDKACNYLSVNGYIVLDRNWYCRFGELDIIARKNGV IVAVEVKGGKRNADYPICNITVKKLSKLTFLLKAWLHENKLNEFCIDLRI DAVSVTFIPELQIRHFVGIL >TW386 putative DNA uptake protein MHKFRWTLSAATSWSFVISLVLASGLLILVYTKPFFGPDKNSKNVSFDAI ESPAHTSFTATSSGMNMISVHVAGEIVHPGVYSLEAGSRVNNAIIAAGGF KPLSDTNSVNLAELLRDGQKIVVLPKDSESSPVNINTADAQRLQSIKGIG KATAKRIIDWRNKHGPFKRLEDLKKISGIGNKLIKSIKDKVIL >TW245 putative ATP-dependent DNA helicase MTIDVFSGLSDQQCDAVRTLRGPVKIIAGAGSGKTLTITRRIVNGIISNE YDSGHVMALSFTRRASMQLRSRLVEHGVKGVYSGTFHSAALSQLRFFWET FHGKPPRQIIRDKVNLLRDAARGINFSFSDESLCQVASEIEWAKQNGYDL SGYDKCNHRISGMSASQARTLMLAYEDVKNNRRLIDFEDILSLTVGMLSV QPRAVARVRDRFRVFLIDEFQDVSPLQFELLRIWLGRRRDICVVGDPNQC IYSFAGAKRDYLVKFADYFPGAREVFLSRNYRSRPEIVCLSRHIIDSHSP DIGLYQPTEGISRNYADTKTATPAQDMRVNAGNRAKCHCTAPPGTKGAVR CGNSDLGYRETPIRWHTFENQIQEMHFIAQSLKNISQSCAVLYRTAIQGE RLAKYLHTSGIIYRSQESRLFHETDVAQIACKRVIEKTIECNVRVVDLVD SVVSGIFPRKPDALTGEYDGWVALQALRLCARRFNGNASSFATYLLEMQR HRREPEMPFATLATLHSTKGLEWDTVYIIGVNEGLIPHHTGDEDEEKRLF YVGVTRARKNIVFSSTRTPSRYLTELCLSPISAKE >TW713 putative DNA polymerase MPSGKSRANTSNSRSAMRAVQEPSVASGSTANALPPADVWNDIACQVRAV QELKGTIINPKRMINSWLFYGPSQSFALALAYASALLSPNAMKGEPNGDK ETHSMVSARTHPDLRILTTENVTVPIREIRELVMKAQLEPSLADKTVFIV EDLTRVPRRSLNVLLKPLEEPHAHVVWILCAPSIRGVTPTIRSRLRAIYL NEPSIENLAGYLTERRGIEKSLACEISYASLGNVDDALYLVDNESTRLMR KKALDLVFCNRDLAEAVCSAQTILDLVSKEAESVVQKRDLQLREGFLKNF AFKQGDVIPKQLEHLQPRRDNKQQVSRQVRDALDGIFLSCLSVCRDVLAI KSGATNCLYNPGSRILDKLSSMPPEKILRNVKALEYARDALKSNVMLLLL LESSLVQMVEM >TW108 putative DNA recombinase MSKNTVTKVADIAIPPDIKPDFDWFFPFAKLELGLSDATLQTYRNSLGIY LSWLGEQGTQRLSEVNSNAIERFLEYRQRHTRKSTLANTVAALRTFHRHL VLEGRQALNPTEKLQQPKVPKALPHPLSLDEIINLLKAADANQAREISLR DRALIEVLYGTGARISEAVSLNVNAFAESDQNLLRLTGKGNKQRMVLFGS YARNAVDNYLQHSRPKLLARSHVYRNITDASTLKYRPTSSTIGDAEDGVL TATAAGVPWLFLSNRGKRLTRQQAGNIIRKLGEAAEIGRYISPHSLRHSF ATHMLQAGADIRTVQELLGHSSINTTSVYTKVTIDSLREVYTTSHPRAL >TW389 conserved hypothetical protein MSIDPLVLLSGKCEYSANEAIASIRKKITDSLSAPEVHVIYADNYSAGEL HRLASPSLLFSPRLVIVKQVEECNDIFLDEAMSYIQDPFKDTCVVFRHKS GIRGKRLLGELRNIGVEIACPDLTPSRFVSDFFKKEKRNITQAAINLLVE SFDDIPELAQFCKQIISDTKGTISAKGTISECEIAFLCWSRPGASVFRVV DAAMNGDEAATVLLLSRLLTEGGSAIPLVAAASARLRLLVKVKYGKKVTA APWQIALAKKQLAPWTNSSFMSCILALHAADRALKSTAGNPNYLVEHAMR LIARSARLD >TW300 putative DNA-binding/repair enzyme MSSVEFAVRMRACAFRVKVYSSQTHIIRVKIFRYASVIDDAHKNTRYKTR SLSEGSCDCHASNKNSSLTTDLTAEARREILAYFSGTLKTFSVPISLEKA SAKQADVLNMLLKIPYGGCVSYGEIASKVNSSPRAVGAYCAKNPLPFFVP CHRVIRSNGEVGGYCGSSNNLIKHSLIEIEQKNS >TW130 putative helicase regulator MTNAVIKDRTSHLLSALARTVREVEMSLVRKRIGPSSVMRFHAVALLLRQ ERARVKSDPDITDTVRTELIRRLDGLAAVMVRIAARDTALMSIVTPDAPV SDGALLYRRRLLSQIGVIDSDGESSEIREAAPPPPSLELYPQSVKMYHAT HIFRPPGPDMESDLVPIIRLANWDLVGSVFKAFSQGGASVCKSLPAPSPF LDRLAPDGLSMMPHQAGFVESARLGHRSFLLADEPGLGKTAQSLLAAGVT NSFPLLVVVPNVVKLNWVREAKMWLPGRRATIISGDDLDAFADIFVINYE MLDRHMLWMVDFGFAGMVVDEAHLIKNFSSQRSGNVLALAQHIRKKCCNP LMIALTGTPVINSVEDFRALWLFLGWLAGPRGRDLSPVFVSELEKTGLTP EDPGFSETVRDVMGHLGIVRRRKTQVAKDLPERMVVDLPVELDGDAFRSV KNAEDDLADALYAQYISLKHLRIDDYQIRLKAVERFAVESKDSSALNIFS IVRKIGITKAPLAIDFTIQMLDSVGKIVFFAKHIEVMNMAEEMFCQQGIR SVSIRGSQTPNDRKNALRTFDEDPDTRVAICSLTAAGLGINLQVASNVVL SELSWTAAEQGQAIDRLHRIGQTEPVTAWRILGAGTVDIRMAALVDSKSN DAILSLDGGDMREVQQESLHIRSLLDLLDDRIRKAEQHVE >TW242 putative ATP-dependent DNA helicase subunit MFMDISECSLPDAIDSIARIPEGSRVSVIGPPGSGKTSLLLSLLEKYSES FEPEEVLVLAPGRLLANRLNGIALPALLKEKKVRSGRLVVTPASFAFRIV QNSMKGERPTLLSGADEDQVIAETIAQNCELFKSSYARSPNFRSRMRFFI EDLSRHGIDPAHLGKIDRWKTYAALIEKYRLARTSNNAFTAVEIIERAAQ LASTGYLPYRVIMVDEAQELAAEHMRLFSALARRNITVILFGDPDKAVAR SASPSIFLDFSEKLFVLKTVFRTPRNLHLLSQKICQGIGVTGSVLAHRQS FNSSILEGRVETVISSSRATSMADIARWFREKHLLEGIDWEDMALIIFQR SSAEVYSHFLERFGVPVQILGGGLNLSEKPIAGAILNAIELACFPDILTG KTLVKLLLSPIGGFDVFLMRKLTIELKRIAPKNIQVLNERLLWAFHAYRK LQTQDTDEVYRVFLASRIGRSLKKIFECLISLERLYREDNVSLPVLIWHV YSFLNLKSAVSKEPWQTSKVSHRVLEEVIALQKLADAVSKKDPLCSAGLI LQKIINAEVPVDNLSIREKRGCVTILTPASSVGYEYRAVVITDIQGSHKM DSTQLDPELALADINNIPFSRYLESKLAGRRHNLLRTLYQAVTRSTSDLL VSVIDSAETSPSWLFYAFFSDYPSCELSSLPLTLRGIVTQLRLDLERDPG NTEAASALRLLAKEGISQADPQNWYGYLSRTENKSYVMDSIKPSALDKFH TCPLGWFTDQLDCNRYPGNATEIGTIIHRCMQELTCDNRQPNLNEFLDYA YAKLREADFESRWVLEREKKRLVGIIRKLVDYLIDFDAHGGTLLASEKSF SFDLNVFKDRSIMISGQIDRLERLSSGEIRIVDLKTGSSLLSKNDAESNL QLSAYQLAVEHLDIVYETLPSAMLIYPAVGTKKAAIRIKGPMDRDSKRVL KNTIRDLLLQNESFTLTAALEEHCESRTACKKLMVPHVSFSVK >TW410 conserved hypothetical protein MPRVAKVLLNLSGRDILLDYFVPDGLHINRGHLVTVPFRGKICEGYVLNI HTPESYVGHLRFIHDKPLEIPVLTRDISLLAHRIARRNCSQIGNLLHLAI PKRRVRVEKAFSKNLSGIKDTDPPVQSQDFALFSQRVRLTSRCRYSLCVP IGIDTQGIQPWAHEFAALATQCYRSGRTAILAVPDQKCQRQLIKALSKVP ELRNDDIKILNSNQTSSDRYKNFLDCLLDRERIIVGNRSVIYAPSNNLGL IAIWDEANYAFLEHRTPYPHIRDIALIRQQISGCVLLFACHIPSMPVMYL EKTGHIECVGYAYRRRPKLFVPKEPGQIPSDAIRVMRNALDTGPVLVQVQ QKGHIQSFSCANCGQLARCKDCSGPLTKTSFYGTSQCKWCAKIADNACSI CGSQKIVMLRRGSGRTAYELTQAFPGCNVLTSDSSNPIELLDVKMLKGTI VVSTCGSEPLVSQGYAAVLILDANTMAVRQNFETAYSTLKRWTAAISLLR HDGTLIIPGIVNRLVRAIGAWQLVSYLETELEHRITLKLPPAVRIFSITG RKSEIDIIALHLREFDPVRVFGPISQDDSKFRLIVMNDFKDVNRVMDFVK KMLDSLRGSSIKIRCDDPEILDEI >TW691 conserved large hypothetical protein MHTDGILTLNGFLEGKIASLGGINPLLHYHDSGLSGIELSKAHPGGIPQF VTGKTVLLSHLVRDEIALKEARQAASNLVAKGNNLLSFRGIHSIHLAIGL TKWTFKSVGYCAPVLLQPVAMRVYRNDFQMKLMGYPVFNAELSVALLEQY GISLDPESFVTLATESGNFKPQPVIEHLRLMTSSIDDFKVFPRLVVSCFF HPARSMLIDFQKVTDNPFVSALIGRREELDLIRTDKSLKLPDASNQLLLE ADDEQKLVVSAILEGRSLAIRTTPGAQVTQAVVNVIGGMLANNKRVLVVS ARQAHFNDIRNHLRRLGLAGLGVSIPRIRHDLIDSIRRNEGARPLHMLEV NDALVRLRRVLLDYRRALHGKDDAIGVSPLDAIEKLAYLSLLEHPPSSAV RFDKGSLEKLSRRKGEAADLLRKTAELGEFECGPGDSLWYGISFATNEDA LAAHNLAKHLFAIGLPILFDKSDALISQTNMRSFKTLDELRAILECFQDS RDILEIFRPEIFGLSLEELIEATSPRRRSPGLSSGKRRQLKKLVREYLLP GVRVQGLHDNLVKIRQLRLLWDRYSPAGTTPKIPVGVADVKVMFEKVKSD IASLNKLFANLHLMNMPRIELMKIFESLAADSESIKHIKQRTDIRDQLRE IGIGDLLEDLSIRHVPPSRVSDELDLAWWQSVLEFFLKNRSALLGGNTSV IERLEQDFKLVYRASMAAAGTLLAWNMAESWKVALVDYPDEAIELKDLLL KGHLVPEKLFGKAPNLAKVLSPVWFASPYSVHQLSCDFDTVIVLGAGELS IAESLGIVSRGKQIVAFGDPITEFPEHFDIASFGANEEIYPRKTSYFTSR DTQEESLFSKLSEILPSLEMNNSHRPYGLIGIANSGFYKNKITGLPWAGN FLGQQSVTFHYVPDGTGLPDRVTSLVEAVDAEVNFVTSLVAKHIADESCM VVTPSLKMATRIRQELKKYDDQLLAKKSSEPFIVVDPRQALSYTRDRVIF TLGYGLTPIGGVMSGFGPLDGDDGEKLIAIALTRARRCLDIVGCFQPEKI DTKRLKKGPALLMKLLSSYNPLNTDSSFETAGSMLDDLARRLELVGIKVR VNYCAVLPLAAGYANRAVAVDIDNTFDDLHDALSLRPRTLEELGWIYMKV HSFELFTSPDEVAGRIKHALGV >TW394 conserved hypothetical protein MVKSVADRFFLGLDFGSTRIGVARNCGSLAVPVGVLPRASCAEILGYISR YSIDEVVIGLPLTLAGKEKQSARLAKEFSRFLVSSGVQVRFFDERFTTVI ATQKFYSLGKGVKQIRKCVDAAAATVMLQLFLDMEVKVDPLERKP >TW165 putative serine/threonine protein kinase MIPFFNKHTRSTDDKDTEKARQIIGNYRVIKTLHESDRAVIYLAQEISGD PGMVARQSFMDPGELVNLVALKMYRAGVTSEHIAIEADALDSLRGPGVVE LRDVLNLPDKRGLVMRALHGPALVDLWETRGSLSPGEMVTILASLVATLA RISSAGYAHGAVWPGNIRFDDIGRPVLTGFSSARKHAPPNADWLDFYSLL RGCAVLINEKQEQMLQISAGVRKRLDPFDPELPAWVEASLFRLADPQPLR FEHPISLHDTSGYNLRESPNPVDSNRQTGKSQIILKLTDNKYVAAILGKL KRPSVLFIALFVSVFVVLLMVIPNNSGEDNERKSEKPGYVKSKGTFKKPS KTGKSRKRSEVSEKLRKNMEECLASKDADCVDVMSEINADLGEKLDEG >TW001 dnaA, chromosomal replication initiator protein DnaA MNKTLNPQEVWIKAVRNLEGFFSSPRVIGYLKKASPSIEGESLIITFPNS HLASVMDDIEVYDATKKTILDSYPSIKEIKITISPDVLEKEITEEINDLV QSMEEEDFALIDHTKPVIPNFFDQNTRVNFGGGPNNHHPTTGVNPRFTFD NFVVGKSNELARAASISAAERPGKSFNPLFIYGDSGVGKTHLLHSIGNYA KFLFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKYRQIDILMVDDIQF LQKKQETQESFFHTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRFECG LVCDIQKPDLETRIAILQKKCQNEKKEVSMEILTYIASCFSSSVRELEGA LLRIFALASFNKEEINMTLAQKVLEDLGAQRGDKIDPIEIIEITAKHYDL AASDLCGNSRVANISIARQIAMYLCRELTDVSLPKLGYIFGRDHSTIIYA TRRISDLIGKDRKTFSDIYKLTQFILRR >TW752 dnaB, replicative DNA helicase MSDTKQPPCDINAERALLGSVLLSKDAAAEVFDRIKPNHFYYEVHKEIYK VMLDLYAASEPTDMVSVSESLRKNHRLEHTKGFEYLNGLAEMVPTPANVY FYVNIVMEKAILRNLAQTGVNIFHMAMDGVHDVEEIVNKAQSDIFSVTTD ESDDDLIRLDAVVKETCEGLDESHTNEDVLRGIETGFTRFDSLTNGLHPG QMVIIAARPSMGKSTLALDFARSAAIKQRVPTVFFSLEMGRQDIAMRLLS AETGIPLQNIRHGKLSPGDWGAIGSLQGKLADVPFFIDDSPNVNLVEIRA KCRRLKQQGLGFVIIDYLQLLSGSQRVETRQQEVSEFSRSLKLLAKELQL PVLALSQLNRSSEQRADKRPAMADLRESGSIEQDADLVILLHRDEYYDKN ARAGEGDLIIAKHRNGPTDNIPVAFHGKYSRFADLPRQDMR >TW252 dnaE, DNA polymerase III alpha subunit MRDYMSFVHLHVHTDYSMLDGAARTEDLMRKAAEDKMPAIAITDHGNTFG AFDFWKTAKTYDINPIIGMEAYLTPGTNRKEKVRKFFASGGPDDVSAGGA YTHLTLLSQNNEGMHNLFKLSSLASIEGYYFKPRIDIELLNQYSNGLIAT TGCPSGEIQTRLRLGQYSEARQAAAQMRDIFGPENYYCEVMDHNLEIEKA VMPDLLRLAGDLGLPLLATNDLHYVNSEDSASHAALLCVQSGSTINDPNR FKFDSDEFYLKSSSEMRILFEDLPEACDNTLLVAERCHINFDTQRSFMPR FSVPEGETENSWFASEVKRGIASRYPNGPSRRVIEQAEYEIRVVQEAGYA GYFLIVADFINWAKLNGIRVGPGRGSGAASMAAYAMRITDLDPLEHGLIF ERFLNPARISMPDFDIDFDERRRGEVIDYVTKKYGSDHVAQIVTFATIKA KQALKDSARVLSYPYSFGERLTKAMPPAVMGREIPLRAIFDTTHSRHREA SEVRQMIESDYEMQQIFNTAKGLENLKRQWAVHAAGVIMSDAPIIDIIPI MKRESDGHIVTQFDYASCESLGLVKMDFLGLRNLTIIDDALANIRQNKNT KVDLENLPLDDPEVYKLLRRADTLGVFQLDSGPIRQLLELMQPDSFDDIS AAIALYRPGPMGARSHTNYALRKNRKQEIDHIHPELTKDLSVLLSSTYGL IVYQEQVIGIAQKLAGFTLEEADVLRWAMGKKKKDELDRQYNKFANGMRK AGYSDGATEALWNVLLPFSDYAFNKAHATAYGLISYWTAYLKAHYPTEYM AALLTSVETSRDKLGLYLQECRHMCIKVLLPDINVSRSGFTPSGENILFG LGAIKNVGANLIDDILEVREDGPFVSLIDFVQRMPHSVLNRRSVMSLIQA GAFDSIHPNRRSLMDIHRSVLENCQANARRSDVSLLDGLLDEYEGFSPPD IPDWNNRERLKYEREMLGMYVSSHPLDGLEDSLLKFRDCSIAECISRKPQ DVIRVAGLITSVEHKVARRTGMRYAHAILEDTSGEIQIMLSGQNYNNFSE QLVTDSIVSVTGRISFRDDATTLYCDSIKDVLPVKKEARLRLKCSEGFLT QNVFIALDDVLRKYPGDTPVTMEVIITDNSVVKSKTFELSRCVEISNDLI AEVKGILGVEGISG >TW484 dnaG, DNA primase MSKIKQEVIHEIKERANIREIIGEYTNLKRQSAGAYAGLCPFHSERTPSF HVRETGLYHCFGCGKGGDVISFVQEIEGLNFVDAVEQLARTLGITIVYYE GDSTPDSRSNLLAACKSAAEFYSEQLLSSTPAVTFLKSRGFDRDLCERYQ IGFSPTNSGDLYKHLRDKGFTLQQAVAAGLLNPSGMDRFRARIVWPVKDV TGNIVGFGARKLAEDAQGPKYINSPESSLYKKNSLLYGFDVAKKAISKKD RVVIVEGYTDVMSCHQSGIDEAVATCGTSWGIGHMRLIKRMLSDSGVLIF AFDGDQAGQHAIMRAFKDSPEIAARSYAAIFPKGLDPCELRIKNGAQAVI DLVERAIPLYEFVINHQLSKCPLGTFPERRAALAKILPFLKEISDRILRD HYTGLVCSRLGIDREQVDLLLPKLEHISSRFHPSKIPWQEDWKKKEFAAP TNPPDARFALEQQVIKSLLQYQHLLERDTAIAMCDYSFHNPTLSFIAQMI GMVIREQNRSISPAEFSKLIHSTVPSEYHATLQALEVLPVPVSPDKLDSY LEGLVRSFENQHLLEEKALLLRQLSSEKSLEKSLELRQRIVELEKQRNSL LPD >TW002 dnaN, DNA polymerase III, beta chain MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYE TSAKVEFSANVIEGGKVLVPGTLISSISQKLPDEPVEISKEDEKISLTCG PVNYILNLMPIAEYPPLPNLENAEQYRIPSEDFVKSVSQVTTSAAKDDIS AVITGINLRLSNESIELTGTDRYRVAVKTLNSVSGHPSDSSVIVSSKTLF EVSKTLGNLESEISVFIKNDGENKVIGFESGNKTVTSLLISGNYPPVAKL FTEETGHYAILKTSDFLESTKRVSVVVERDEPIEFSFVKNTVTIKGSGIA LASEKVECELFGDEISIMLRPQFLCDGLIACQEDFIKVAFTKPSVKNRPG PVLITPKLSNKEKIDFKYLLQPNLFAK >TW727 dnaX, DNA polymerase III subunit gamma/tau MMRSEQALYRRYRPEVFSEMVGQDGVTGLLSSALDNNRLGHAYLFSGPRG CGKTTSARVFARCLNCVNGPTSSPCGKCQSCIDLGRSGNGSLDVIEIDAA SHNGVDDARALRERAIFAPAQSRFRIFILDEAHMVTTQGFNALLKIVEEP PAHVKFIFATTEPEKVLGTIRSRTFSYPFALVSASIMQPYIADICNKEKI RVEDGVLPLVVRAGGGSVRDTLSILDQLMVGKCITYESTVGLLRLAPDIL LYDLFLAIAEDDGATAFASIEKVVEAGYEPVQFIEDLMSWVKDMTLAVCN AEGVFDSYAPEKVERIFALSKRFSLKDLDAMAEILFSRSNRLSGPISPRL LLEIMLASLLLAVGKSKLQVSDRVSDTQRQKGYPGNLLHNWSRVLDALKS ETANMLQHSKPLRLTGSSLTIGMPQEILSRFVANKAAIDDLKSVLYKITG VQLRLSGKPIDDPDNTVKTPSSCLDNGTVTDNSGYKNTEVDDAETKEKPD NPITGEAVLVQAGAKLISEEEQ >TW273 gyrA1, DNA gyrase subunit A MDKDIPEIFDVISDNEKITDVDLLHQMQDSFLEYAYSVIHSRALPDARDG LKPVQRRILYTMSRMGLSPDKAHVKCARVTGEVMGKLHPHGDAAIYDTLV RMSQDFTMRIPLIDGHGNFGSLNDGPAASRYTEARLSRAAVAMINDLESN VVDFVPNYDNQFTQPEVLPALLPNLIVNGSSGIAVGMATSIPPHNLQETV RAAIYLVRNRQSSLEQIMKILPGPDFPTGSIIVGKEAFKEIYATGKGSFK IRAKISIDYAGIGHTNLVITELPYMVGSERVIEKIKQGVNAHRIDGILDV TDLSDRKNGLKLVIGIKPNFSPNEVMDNLYRHTPLEESFSVNSVALIDGK PKTLGMLDMLKVFIDHRVCVITRRSKFYLATHKKRLHMIDGLLLALVDID KTISIIRNSEGIKEARKNLMKCLNVTRDQAEYILDIRLNMLTKLSTIKLQ SEQEELRKTTQDLEEILSDPNKIDAILIDELKKVAQRLPSPRRTILESSV KSKKQKTDYPRQVVLTTNGFIFTIEVNNDLISELSQPETFDMTFNTHSEP LRVVKSSIVCGVRSRIGALTSAGKVIPFTPIGLPVLDSGFVTAKSFLGLE NDEEAVLLFELHQKESLAIATSSGIVKRVTPAIWPDRTERVITLSAGDRV VGAARGVSSCGYFVFITAKGNLLHYSAGLVNPQNRPARGVAGVTLKDDDD RVISFGYTEDVDRANVLTVSKRMTTSRLSSYQTRGRATRGVQCHKFLKGE EWLHAAIVGENLAAIDNLGNVVAIGKSSVTAKSCAGVKQYRLPQEKSGKS KREDRLIRYLGYPFVHGNDTY >TW006 gyrA1, DNA gyrase subunit A MSEQNINQVDLREEMQRSYLDYAMSVIIGRALPDVRDGLKPVHRRVLYAM YKGGYRPEKAFSKCARVVGDVMGQFHPHGDAAIYDALVRLVQPWAMRYPL AQGQGNFGSPGNDGAAAPRYTETKMATLAIEMVRDIDEDTVDFSPNYDGE SVEPTVMPCRFPNLLVNGSVGIAVGMATNIPPHNLAEVSAGALWCLENPD ATDEELTEALLERIKGPDFPTGATVLDTGGIKDAYLTGRGSVVMRGVVDI EEIDGRTCLVVRELPYQVNPDNLALKIASLVKENKLSGIADIRDETSGRT GQRLIIVLKRDAVARVVLNSLYKHTQLQENFGVNMLAIVDGAPRTLSLCS FIRLWVEHQIEVIVRRTTFRLARAEQRAHILRAYLRALDQIDEVIQLIRS SKSAEEAQSNLMALLKIDETQARAILDLQLRRLAALERQRIISEAREIEE LISSFRKILSDKTAQCQVIAEELREIGQKHSDARRTEIIRGFDGSVSIED LIPVEPVVVVMTRCGYIKRTRIDQYRSQHRGGRGVKGAQVKADDVVLQFI STTTHNWLMFFTNTGRVYRAKAYEVPEASREARGQHVANLLPLKPNEAVT RILSVSNFDSEDTSLVLATKDGYVKKTTLKEYDTSLSTGVIAIKLRPGDK LVSAVLARSDQDIILVTKNARSLRFKSGTLRPLSRGSYGVKGISLRENDL LLSAELILSDDSYIFVVSERGYAKRSRVGDYKLQARGGIGVRVANITEQK GVLADMLVVNDDDEVLVILASGKVIRSSVAEVSPTLRYTTGVVFVRMSDG DKILAMTIAEKCDDLEGQG >TW005 gyrB1, DNA gyrase subunit B MVDTPEPAYGADQIQVLEGLEAVRRRPGMYIGSTGSRGLHHLVYELVDNS VDEALAGYCTKINVAILADGGVRVTDNGRGIPVDIHPKEGVSTVQVVLTT LHAGGKFGSGGYSVSGGLHGVGSSVVNALSKRLYVEVSRQGFVFRQNYEG GNPTAALERCEETNATGTAITFWPDDDIFETVCFEYEVLRSRLQQMAFLN SGLTVSITDERVDSPTNNETYCYQNGLFDYVMYQNRIRKHEPLHEEIIHF QAENKDRLMSLEVAMRWTSSSTENIYTFANTINTHEGGTHEEGFRAALTS LVNRYAREKGFLKEKDESLQGEDIREGLTAIISVKLGEPQFEGQTKTKLG NTEMRGYVHHEVNSYLWDWFDSHPAQAKVIISKALLAAEARLAAKRAREA SRKRGLFESVSMPGKLKECQAKDPAVSELFIVEGDSAGGSAIQGRDPLTQ AVLPLRGKILNVEKARLDKAIANSEIQAMLTAFGSGIAEDFDESKARYHK IILMSDADVDGQHITTLLLTLLFRYMRPLIESGYVYLAHPPLYRIKWSNS EHDYVFSDRERDKKLAEGKLSGKKIPKENAIQRYKGLGEMNYRELWDTTM NPATRTLRQITVDDVTLADEIFSVLMGEDVDSRRKFIQHNARDVRFLDI >TW268 gyrB2, DNA gyrase subunit B MSSNTDYNADDIALLEGLAAVRKRPGMYIGSTDNHGLAHCLWEIIDNSVD EVLAGFGNVVNITLHGDNSFSVQDFGRGIPVDIESKTGLTGVELVFTKLH AGGKFGTGAYFTSGGLHGVGASVVNALSEKLSVEVDRDGMTWVMEFRNQV TSGLRSKCKIASNVTGTRVRFWPDPLIFGSAEICIESLHQRAMQTAFLVP GLRVNIEDRVLGKSSSYLFEGGCKQFVEHLSAGELITDVLCIRGKGSFSE AVPVLKETGNLVISSVERVCDVDIALAWRNDFETHINSFVNVIETPKGGT HYSGFEQALLKTIRNAVSSQSRYLKSGNNRPEREDVFSGLTAVVSVKLPE PQFEGQTKEVLGTPAVKGIVANIVADNLQKLFEDPKYKTQIRRVLEKVVA QMHFRLAARASRETQRRKNALETSSLPAKLVDCRSNDVNESELFIVEGDS ALGTARRARNSEYQALLPIRGKILNVQKASVADALANAECASIIQVIGAG SGSNFDIAQARYGKVIIMSDADVDGAHIRILLLTLFFRYMQPMISSGRVF SALPPLHRVVVKNSNEKIYTRSDRELEMVLSRLKQEGLEHREPIQRYKGL GEMDADQLAETTMDRSKRTLLRIRMSDAQQASDIFALLMGNDVAPRREFI ANSVVSTDRIDS >TW128 hup, DNA-binding protein HU-alpha MVSLNRTELVAKVAETSGVSRATVNSVIEETFAVFAETVRAGGKVTIPGW CSVTRSHRAARTGRNPQTGKTVEIPAGYSVRIAPGSKLKAAVK >TW354 ligA, DNA ligase MPHPDGDLDRRIELLTAQIIAARKAYYQENTSLMSDVEYDALEHELKDAE HAKGFSDRNSPSLTVGIAAQLNLFEPVKHIEPMLSLDNVFSLDQLHSWYE KTKKICPEGDQCTFVCELKIDGVGVSLRYANGYLISAATRGDGAIGEDIT QNMLYVPSIPPRIALPGIFEIRGEAFIKRDEFDRINQLSLERSKQFANPR NFVSGCIRTKTPNMRYLESISFYAHGFTQVYGYTSGGMNLHSDITASGGV KTEIEHGMFSAYSRLSECKIPVNSYNRLCTNFSEIESYIENIRLNRQCVP YAIDGIVVKIDSLQKQALLGSTTKAPRWAVAYKFPSESTVTRLLDIEVSV GRTGRVTPYAVLQPIQLDGSEVSRATLHNQKVIGDKDLLIGDYVRIRKAG DIVPEVLCALPEKRDGSEVLFKMPSLCPSCGAELMPSKLGDIDLRCPNMQ SCLVQLAGRLEYIGSRGVLDIAYLAEENAYALSHLRKFGKSAEVQLFKIT IDDLVALEFMYKGNMRSPFRKKGDSFPGFEEPTKSAQDMVDSIERAKRSP LWKFLLALNIRHIGPASAKALADHFGSIESIINAKIDELLKVRSLGETIA ISVHDWFRDPWRVELVNTWRSDGALFGD >TW589 mfd, transcription-repair coupling factor MNLLAAIEAFIPTGFAATACPGGFSACKVASLVGDVDSLLVILPSEDACF TDTLRTYLPESIILNFPEWDTLLHEQISPSPERVSARMEALHKISLFRKN NKRAKNAQTSKTLHDIGILEDNLPTIHQKLVVVASIKAFMQPIISDGNPP CLYFHTGGEYELSEIANILVAMSYSRTDLVGARGEFAIRGGILDIYPPTE KHPIRIEFFGRQLESMRHFRVSDQRSIGPYVSNNAHVGMFAQYQDNSVCK CNVSLSSNPHRCASHLSINNTYKPSAVMAPASEALIVYPTSEFPEEDQIN NITPKSLLHFMPGKSTVVVIKCEQLTSKIEQLINTNREFSEAFCTPDAFS ATNKYARNNHDGDNTLDGIAEKINYYTLEGLRHFAADLGIGWTDLSGFNS EDEKSLITANPDFSGYSVFDHIRNLQKSGWQIVLASTNNRVYPTLDEYGI DYLILSANTDYSSFEECRECSTRQESPQVMCTPSITQSCTHDRTGAQQKS YISDLFFKQADPDAVDSGLIKHRVVVIDSYIQEGFSVPTKSFTLIGEHEL FGKTTLQKAPRISRRAIDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDA PEQEYLILEYAKNRLGVADKLYIPTDQLSMISKYIGSDRPTLSRIGGSDW ALTKSRARKAISSIALDLVKLYSRRSITKGYAFSPDTPFQTHFENEFLYT ETRDQEKTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNK QVAVLVPTTLLARQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTICGIS SGGIDIVIGTHMLLNKKIQFKDLGLLIIDEEHRFGVNHKEAIKKLKIGID ILAMSATPIPRTLEMSLMGIKEISTLSTPPENRMPILTHVGPYRDKQVIA AVRREIIRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERML EKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLSQLHQLR GRVGRGTKRAYAYLFYTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLEL RGAGSLLGHAQSGHIASVGFDLYIRMVTDAISNFKGEQSRTNNLRLEIPV DASIPKAYVDSERLRIELYKKISEALSDADIKDIGDEILDRFGNLPSQVI NLLELARLRILASSRGIDLITLKSDFRQGGDVVTVSPVSFSDTAHQNLLR DGQFSFICYRNSKLSACINRSSSEHSGYSEHSRQIINSIRHFIITSCN >TW374 nei, endonuclease VIII MPEGHSIHRSAIQFEHNFVGKKIGISSPQGRFSPGARLLDKQKMISAKAY GKQLLLGFENNRFLQVHLGIYGAWQFYGNISCAPTILPGAEGIQSIGAPR RLKGPCITKNSGSTPGASWKDLMFKHQAQARAKLITDTAGVLLSGPAVCK VLTPEEADELISRLGPDPVVNPMGYNRFIKAARKSNLQICKLLMNQSAIA GIGNIYRAEILFRNRVNPFLTSNTIPEDTLKRIWDDWTVLLKCGIKTGQM ITMNKAPGHWVYNHHKSPCSVCFHPIDCVNVAGRKLYWCVVCQA >TW480 polA, DNA polymerase I MTGTPDQSKRLILVDGHSLAFRSFYGTKAIAVVNGVQVNALYGFVNRLTQ LLESGPVSHFAVAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEF LHLIGVNHFAVQNYEADDIIATLSRLALEEGFSDVRILSGDRDLIQLVNN KVSLLFFSAKHRLGFAVYTPEAVMDRYGIEPHVYPDMAALVGESSDNLPG IKKIGEKTATTLLQKYGCLQKIIESRWEISGVVGQNIRNDYHVALRNRKL NTLVNDLPLPASVSDLSLSGEIDTKKLEGFLRRYRMNSITPRLLRCLQKF TNAANLNRALTASPQRRGSPSIRKYNSKTQKPVRNNRVSGVRRRRYRADR TSVQLF >TW628 recA, recombinase A MSSNDQINRTRALELALANIDRQYGKGAVMRMNDAQKAYIDVIPTGSIAL DYALGVGGLPRGRIVEIYGPESSGKTTLTLHAIASVQRAGGIAAFIDAEH ALDPEYAKKLGVDIDALLVSQPDSGEQALEISDMLIRSTAIDLIVIDSVA ALVPRAELEGDMGDMHVGLQARLMSQALRKITSGLNQTGTTAIFINQLRE KVGVFFGSPETTPGGRALKFYASVRLDIRRVETIKQGTEAVGNRTRVKVV KNKVAPPFKQAEFDVLYGVGISRESGLIDFAVDRGIIKKSGSWYVYGDDQ LGQGKENARRFLLENKSVADEIENKIISLLGFRSNEFGDLPDHDAAVRTS PDTNSRKVSGTGAVHTTSGSPSAGKGTASGAVNNSRDSTGGDTPAGQGPL NLSVNRDVSTDTVSSKISDATHNQKPAGNGKSVKRKG >TW003 recF, DNA replication and repair protein recF MQNNLISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLS GFGSHRTYKNQPLIKSGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKV DGKPSKLRDLVSVFSCVIFSPEDIDLVKGDPGHRRKYLDDIICRARPMML DIYSAYDRTLKQRNSLLKSFRKSSCKSDLLDIWTQKLVELGLEIVNARKR LLKILNPKISEFYSKLAGVSSTAELFCQSSDCLIDTFDLLRDREIEEGVT LAGPHRDNVDILLNSCPARSQSSQGESWTLALSMKLSLIELMRETKRLYD PDPVVILDDVFAHLDSYRKQKLAQEVFSYEQTIVTTTDNSDNYRTSQTLV VEEGKVFSENKKG >TW195 recG, ATP-dependent DNA helicase RecG MASLLAKEFGISRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRVL STEQRKTFSGANFLSVTLSDGENIIQLVFFHQPWRAENLKPGACGLFSGK VTEFNNKKQLSHPEYELFSSEPTREQIQKWNEQIIPIYRACIACPSWKIA RAVDLALEAVKGQTVDFMSGNYGYMSVEKAFYVIHHPTDNEELEAAKESL RFFEAFLLQSALLHRKRFRNRASATPFIRKNGGFLERFDARLEFSQTNDQ LRAADEIFEDLSLSEPMTRLLHGEVGSGKTLVAIRAMLLAADNDMQAVLV APTEVLAKQHHRNLTRMLGHELCAEIQPSLLLGREKHTLRIASGRSKIII GTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDELLLKGDSPHLLMLSATP IPRTVALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGREVIRRIS EEIQKGHQVFVVAPVIEQSRTGAASISALLRELEETPLLQGAKISRLHGK LTAAECEKSMEEFSCGASDILLSTTMIEVGIDVPNATAMVIVSADRFGIA QLHQLRGRIGRGNLPGVCLLVTNAPEGSAARSRLDLVARTHDGFSLAEID MKMRREGDLLGLGQSGQGNYRLLRLDEDLQVLSDARLHAEGIMENDIKLE KNKLLRLFLSQYLSGTNLSRLLS >TW111 recN, DNA repair protein RecN MIEQISIRNFGNIAKADIDFGSDFTVITGETGAGKTMLLGALETLLGKPG NSKYPHNQSAQVIGIWRVPRHFENVLPCIEGKLTVSREISLSGKSVANVN GKTANNSYLGKLRNKLLVVHGQFAQVRLKNPALQRQILDGYAGNTDLLKE YQLAWSELSKTNLELRNIRDNLAGRRAEAIGLIQAVEEINEINPQIGEDE NIKKQINILENHEQLLGNLRAAKQLLIDNGIIDKITELQQILCEMEGIKL QHAYGTAIDTALVTMQELSNEITKQIDTLPEDSTEILDEMHNRLGALRKL QKKYGPTIEDVIDFAKNALARSSTIENDDVRVQELEAKKEELQKNVEYLA KKLSERRVSAARLLGDSVSLNLPCLAMPEARFEVQVLQKSHDSYGMDQVA MFLRTSYAGAAQPIGTGASGGEISRVMLAIEIALASVKTVPTVIFDEIDS GVGGAAAIEIGRRLAALARRLQVIVITHSAQVAAFATTHLLVTKTGNLSD VCSLSGENRVGEMARLLSGLHDSESGLEHSRELLAMAAREMQGRT >TW487 recO, DNA repair protein RecO MCKNWDVSGHYRDRAIVLRTKPLGEADRIITLFTRSNGTSDFVAKGIRRP KSRFGSSLEPFTVIDAFLYIGRGMDGVSQAEILASYGSRLVKSTESYIAA NVIAETGRRLGIAGGSVQQFDLLHGAFSALSRGISSPEAICSSYLLRSMS AAGWRPALENCAKCLLPLVEYTIDISAGGLVCTSCSEHPVVNNKLCEYLL ALREGDWPYINESDESLRGQARNFVFEYTQWHIDHPLKSLKIVAKSW >TW726 recR, recombination protein RecR MYVRIVQDLIRELGKLPGIGPKSAQRIAFFILQNPSFDIDRLSETLQSVR KQVQFCKVCGNFSEEDECVICSDPRRDRGVICVVEEPKDVVAIEKTREFS GLYHVLGGAISPIDGVGPDDLNIRQLLQRLADGTITEVVLATDPNMEGEA TASYIARVISAMRIRVSKLASGLPVGSDLEYADEITLGRALEGRQYIN >TW531 rnhA, ribonuclease HI MTNNEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAV RELLIATRHTDRPILILSDSKYVINSLTKWVYSWKMRKWRKADGKPVLNQ EIIQEIDSLMENRNIRMSWVNAHTGHPLNEAADSLARQAANNFSTRSAHI PGPGWTERSAK >TW502 ruvA, holliday junction DNA helicase RuvA MHGIGFLVRVPQSFNPEVDAEVKLYTSLQVREDSVSLYGFASVLECTVFE QLITISGVGPRVALAILSVLTPAEVAAAVLEGDDKPLQRVSGVGKKLAGT IVLQLAGKLTSVPLENRKQEQAVDRSAEIVQALIGLGWQRQESAAAVESV LEKDQSLTMPEILRNALRYLAKQE >TW501 ruvB, holliday junction DNA helicase RuvB MTSDEKQTEGALRPKLLAEFVGQNKVKNQLALLIQAAKIQGRVTDHALLA GPPGLGKTTLAMIVAAECGVSIRMSSGPAIQHAGDLAALLSSLLPGELLF IDEIHRMSRVAEEMLYLAMEDFRIDIMVGKGPGATSVPLELSPFTLVGAT TRAGLLPGPLRDRFGFTARLDFYSPEELLQVLIRSARLMEIQYYDDALES IAVRSRGTPRVANRLLRRTRDYLLVSNSSEILSKEIALKAMDVYEVDSLG LDRLDRAVLHAIFDRFSGGPVGIKTLSAYLGEEAETIENSIEPFLVRQGL LVRTPRGRQITDLARKHMGFKEDLSGFELYL >TW503 ruvC, crossover junction endodeoxyribonuclease RuvC MRIMAVDPGLTNCGVAVVNATGPLSLELLAVKVFHTDRSLSFENRIGKIG DSLLSMLEEFSPDLFALEKVFAQHNLSTVSGVAGVIGVASYLCYKHGTHI AFHTPSEIKASICGYGNAKKDQIRSMVNRVFLSQDIPLRHDASDALALAV CCARRYALHNEHFTEARLRWLSALGASSTERGR >TW116 ssb1, single-strand binding protein MDATVTVVGNLTADPELRYTATGAAVVNMTIASTPRMYDRQSGEWKDGEP LFLRGILWREYAINAAASLAKGMRVVAVGKLKQRNYETREGDRRTSVELE IDEIGPTLRYATAKCSRATQAGHGVSPDPWADSQTGQGIDSHTTRSEEIT ENAKNGEGAGKNELNKKVLVGDNVSYEDFDSDEVPF >TW367 ssb2, single-strand DNA binding protein MRGKRMNHITVSGLVATEPRSFLTAEGVHITSFRLAAQDRHFSRNANSWV SGDTNWFTVTGFRALGSNAAESISKGDRVIVYGRLRLRTWGDNKMAVEIE AESFGHDLRWGTSVFSKRFYQLPEASDNLRTKYDVDEAETPEIHAKAA >TW715 topA, DNA topoisomerase I MKKLVIVESPTKVSSVGRYLGDGYVVMSSVGHIRDLPAPSGLTPDLKRSA HAQFAVNIENDFEPYYVVLENKKKVVEELQSALNNSDELLIATDGDREGE AIAWHLVQVLKPTVPVRRLVFHEITREAIAYALQHPRPIDENLVDAQEAR RILDRLYGYELSPVLWKKVRPGLSAGRVQSPATRLLVDRERERINFKSAE YQAVTADFQVDSDVFSASLTLFGERKIATGRDFDNLANLKTDALVLDKNL TDRILEELKSKGALDVEAIDSKPYSRNPYAPFITSTLQQDAAHKLGFSAK RTMRTAQQLYEKGFITYMRTDSPRLSLQAISAARAQVELLYGREFLPDSP RTYGAKAKNAQEAHEAIRPTGEVFERPESIESVLSVDCMRLYDLIWRRTI ASQMVSARGETVTLTLSARIPERSIFVLSGTVLHEKGFLKVYEGLQDLNS KLLPNLQVGDQVTLVDVRAVGHTTLPPPRYTEASLVKVLEELGLGRPSTY ALILRTIQERGYAHLRNRMLVPDWLAFSVVNLLENFFSRLIDYDFTANLE DQLDEIALGSQNRSDWLRKFYFGDDNLPGLKEIISGAKDIDARAINSIPM VGATLRVGRYGPYLEVGDKRFSIPHDVYPDALTPEKIHELVNQPESPVRE LGAHPETGKLVVLKSGRFGPYIEEVSDEKNVRRSSLFKNMDPEEVNLDVA VKLLEIPRVIGVNQENGEKVIACNGRFGPYIKCGKETRPLDSEDDILSVT LDEALAILSAPKVRRSRVLMEFPTDDPVTRRAVQIKSGRFGPYVTDGVTN ATLDNTSWEDVTFDEAVSLLAEKRQRVDGDLDQETAEKIHV >TW179 ung, uracil DNA glycosylase MGYLHVLAQRGVIHATWVSALEPVSSNLAAMGDCLRSLRSKGESFLPAPR NILRAFRYPFDSVRVLIVGQDPYPTQGHPIGLSFAVDHKVRPLPGSLQNI YTEYRSDLNLDPPQHGDISLWSERGVMLLNRTLTVRPGIPSSHRGLGWEE ITQTAVRALAARDVPLIAILWGRHAQELKSVLQSDRVAILESVHPSPMSA TRGFFGSKPFSKANDLLRDLGSAPIDWRLT >TW476 uvrA, excinuclease ABC subunit A MSSRRSFLRVKNARVHNLKNLNVRIPRNSMTVFTGLSGSGKSSLAFDTIF AEGQRRYIESLSAYARQFLERLDRPEVDSIDGLSPSVAIDQKTTSRNPRS TVGTVTEIFDYLRLLWARVGVLHCPECDLPVQKQTIQQIVDSIAKIPHGE RFMLLSPLVRQKKGEFVDLFSRLTTSGFSRVVVDEEIYLLTEVPKLKKNS RHTIKVVVDRLVSEDNMLTRLTDSIETAFGLSNICEVQTFKGDVFRFSIN SACPNLHFLNFDKIEPRTFSFNSPVGACPDCDGIGTVRSVNMTTLVPDTQ LSVEKIALDLIDKKIVSKNFMREMSALARNLKFTLNTPWSDLTDYVQNTI LHAKNFLLHNTRVRYYTGLVRKIERDVSENSGGSLSGYLYNSPCRSCSGK RLRASSLCVKVSNKNIIDVCDMPLDGILHFFKALDIPRKFEKISSPILRE IISRLEFLIELGLGYLTLSRSITTISGGESQRIRLATQIGSGLTEVLYVL DEPSIGLHKRDNEKLIKLLLNLRNRGNTLIVVEHDEETIRSSDWIVDIGP GAGRMGGQVVYSGPVGKMPSRSLTGKYLSGELMVSTPKKRRVSSCGITLS GAKENNLKNITVFFPLKTFIVITGVSGSGKSTLVNSVLCKALSNICKGNT PSENNCQDADCTDACTVRNGMQHNEQTVRLAPALDGAENISKVVHIDQKP IGRTPRSNLATYTGVFDKIRDIFSKTPTARARGYSPGRFSFNLKGGRCEK CKGDGCIKIEMNFLPDVYVDCEDCNGMRYNRDTLQVLYNNMSIHDVLTMP VCEAVEFFRAIPSIHQPLKLMDEIGLGYMTLGQPAPTLSGGEAQRIKLAA QLQKRTAQDVLYVLDEPTTGLHFHDVRQLLEILHRLVDNGNTVIVIEHNL DVIKTADHVIDMGPEGGNAGGSVVACGTPEEVALHPDSATGYFLKKCL >TW477 uvrB, excinuclease ABC subunit B MYKNLHPKYFRLAAEYDPSGDQPKAIGELSDRIESGETDIVLLGATGTGK SATIAWLIEKLARPTLIIAHNKTLAAQLANEFRKFFPDNAVEYFVSYYDY YQPEAYVPKTDTFIEKDASVNSEVERLRHRATTSLLTRRDVIVVATVSCI YGLGAPSEYLKAGFRLEVGQKISQRVLLERFTQLQYNRNDVGFERGNFRV RGDTIEIIPVYEEYTVRIEMWGDEIERVLCLHPVTGNLLSEQRGVLIFPA SHYVTSSENLKRAIVDIRKELQQRLRYFKRNNSLLEAQRLETRTEYDIEL MEQLGFCSGIENYSRHIDGRAPGEPPFCLLDYFDDDFLTVIDESHVTVPQ IGSMHAGDFSRKKALVENGFRLPSAIDNRPLCFDEFRQRVGQVIYLSATP GKYELSKSDGVVEQIIRPTGLVDPKITVKPIKGQIDDLLEEIRKRKLLSE RVLVTTLTKRMAEELTDFLSEAGVNVSYLHSDIDTLHRVELLTSLRMGRI DVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTTSFIQTIGRAARHVS GEVHMYADNMTESMQKSIDETNRRRRIQQDYNRKMGVTPVPIKKTVSDIT EVLSRPSRKIDCTILDSLPDPKIDGKQIKSHIKSLEAKMYMAAESLMFEE AAELRDEIQSLKEKFLKPRGSGGKIRQ >TW475 uvrC, excinuclease ABC subunit C MYPPRRIEIPCKPGVYRFEDENGRILYVGKAKNLRNRLGSYFTNARRGRR ISYMLSISKKVGWTCVADDIEALRLEYSWIKEFAPPCNVKLKDDKAYPFL AVTIGEQVPRLLITRRKIQYATHFGPYPKVFHLRETVSLLHKIFQIRTCS PTNYKRAIASGMPCFEGQINKCFGPCSLKTTHLQYQKRIKNLMAFLEGQS SSLLESLKKKMLKASKNKEYEEAAILRDKIQAAQTVLSRSAVLLDETVSA DFIAVVSDNSIASVQCFRVIAGRIKSVYSWHFEQQEDQSASELLSQSIIQ VYDKLSLPKRIVLFDKPSYLSALSAHLNDKNIDRSLEIEIVYHPNEQERR LLETVKDNALSELERHRLRRSSDYTERHRSLFELQKYLNLNSLPVRIECF DISHLSGTNTSGSMVVFENGEPKKSAYRHFNIHIDQNNDTASMFSLICRR LRSLESVAQDSPDYPHLMIIDGGKPQLSAAVGALQEVGLKIPVFALSKRL EELWSPGVKTSLILPPNSESLFLLQKIRDESHRFALKQQTRRREAYLTSE LFRIPGLGKQKVMQLLRRFSSFAEIRQASIEDISALPGFGVKTAEKIKEC AEAFSLK >TW665 xseA, exodeoxyribonuclease VII large subunit MDMQADEMYRQDPLGSCGNPRQVSHITGRLSSLLGELPATWIEGEVTQLS PRRIGVFLTLKDMNESKHLEFFLPFDAFKDEVEVGNRVKIHGKLEFWATS GQIKVKGFEIQSVGIGELIERIARLRVQLALEGLYEHKRPLPFIPKLIGL VTGQNSDAEKDVVTNVLLRWPAAKFCTIYASMQGASCVSETISAIQKLDA NNDVDVIIVARGGGSFHDLIGFSDEQMIRAVFAIKTPLISAIGHEADRPI LDEVADLRASTPTDAAKRVVPDIADEKRLIKSAMSFLKKSYEPVIDKIKC DTLSWSQAFSNPFETFIAPRRREIDLFYQQMLTVVWANFSKTETEIAAIK KHLLAISPQNTLVRGYAMIEDETGRIISSADKLSAGDTVTLRLHDGLVRA EITQ >TW666 xseB, probable exodeoxyribonuclease VII small subunit MFALGGIVYLENNDNVGDGVNEESVHSNNAHTNNKSVHTNGQASAVTGGN CASYEEARDRLQEILRKLQEPSQSLEASLKLWEEGRLLVGYCEEVLQDAM KRLNYGDTTNPEDASLKESEA >TW756 xthA1, exodeoxyribonuclease III MRIATWNVNSIKTRLSQVLHWLTENEIDILALQEIKCRTNAFPAEVFMEH GYFCAAHGLGGREGVAIVSKSEPQDITTDVEGIPGYDDRNTGKQDKSDVQ ARIIAATVGGVRLYSVYVPNGRDVHSPHYLYKLDWLEGFATHIRGVINTE PNLVIAGDFNIVLFDSDSNDPRVQTDTDVFRTPHERQAFYNLLDLGLRDL VRPTEPEGFTFWDYRAGRFQKNEGLRIDHILGTDPIANSVRFAKIHHEQR KGDEGKTPSDHVPVMIELR >TW323 xthA1, exodeoxyribonuclease III MRVGTWNVNSIRARLERVLAWLKNECIDVAALQETKVRTGDFPVDAFRDA GYYSEAHGLRGFEGVAIVSRFPIRRVTVNIPRAPGFLSDRWGTDIPQEAR AISATTGGIRLYSLYVPNGREVGSPHFEYKLAWLKALASHVRTVLRRTPG IPLMLVGDFNIVTCEQDTADPDFQLPNDITCSGPEREAFQAILDTGMFDL IRPFAPIGFTSWSYQRQRFQNNQGLRIDFMLGSDSVQRRTIWGEIDRVQR RHLFGLTPSDHAPLVSVIDPPRRTFRRDD