Gene list
Applied filters:
COG category: Replication, recombination and repair
Gene type: CDS
Genomic element: chromosome
Number of genes found: 78
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Dehalococcoides sp. CBDB1, CBDB1 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | cbdbA1481 | DNA invertase/resolvase family protein | SubName: Full=DNA invertase/resolvase family protein; | chromosome | CDS | 1167601 | 618 | - | 0.469256 |
NA | cbdbA1432 | DNA repair protein, RadC family | SubName: Full=DNA repair protein, RadC family; | chromosome | CDS | 1130429 | 819 | - | 0.503053 |
NA | cbdbA513 | dnaD | SubName: Full=DnaD; | chromosome | CDS | 413303 | 711 | - | 0.461322 |
NA | cbdbA512 | ATP-binding protein, DnaC family | SubName: Full=ATP-binding protein, DnaC family; | chromosome | CDS | 411970 | 1308 | - | 0.502294 |
NA | cbdbA1366 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1083169 | 498 | + | 0.445783 |
NA | cbdbA915 | Smr domain protein | SubName: Full=Smr domain protein; | chromosome | CDS | 749695 | 303 | - | 0.458746 |
NA | cbdbA108 | putative helicase (Snf2 family) | SubName: Full=Putative helicase (Snf2 family); | chromosome | CDS | 97184 | 3102 | + | 0.411992 |
NA | cbdbA189 | ATP-dependent RNA helicase, DEAD | SubName: Full=ATP-dependent RNA helicase, DEAD; | chromosome | CDS | 172497 | 1686 | + | 0.514235 |
NA | cbdbA196 | putative methyltransferase | SubName: Full=Putative methyltransferase; | chromosome | CDS | 181003 | 579 | + | 0.499136 |
NA | cbdbB2 | putative recombinase protein | SubName: Full=Putative recombinase protein; | chromosome | CDS | 58013 | 798 | - | 0.45614 |
NA | cbdbA1249 | ATPase, AAA family | SubName: Full=ATPase, AAA family; | chromosome | CDS | 1000987 | 1374 | - | 0.4869 |
NA | cbdbA709 | probable site-specific recombinase / resolvase,fragment | SubName: Full=Probable site-specific recombinase / resolvase,fragment; | chromosome | CDS | 577697 | 516 | - | 0.507752 |
NA | cbdbA67 | conserved hypothetical protein | RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; | chromosome | CDS | 44628 | 402 | + | 0.467662 |
NA | cbdbA1487 | transposase orfB | SubName: Full=Transposase orfB; | chromosome | CDS | 1173967 | 804 | + | 0.476368 |
NA | cbdbA546 | DNA repair protein, RadC family | SubName: Full=DNA repair protein, RadC family; | chromosome | CDS | 445489 | 660 | + | 0.486364 |
NA | cbdbA971 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 790525 | 813 | - | 0.416974 |
NA | cbdbA559 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 453970 | 723 | - | 0.481328 |
NA | cbdbA602 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 494143 | 1140 | + | 0.466667 |
NA | cbdbA1156 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 940576 | 255 | + | 0.45098 |
NA | cbdbA111 | atp-dependent exodnase, exonuclease v | SubName: Full=Atp-dependent exodnase, exonuclease v; | chromosome | CDS | 103391 | 4272 | + | 0.419007 |
NA | cbdbA1485 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1170232 | 2208 | - | 0.445652 |
NA | cbdbA1227 | NUDIX domain protein | SubName: Full=NUDIX domain protein; | chromosome | CDS | 986244 | 411 | - | 0.474453 |
NA | cbdbA299 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 262669 | 147 | + | 0.489796 |
NA | cbdbA524 | putative exonuclease SbcC | SubName: Full=Putative exonuclease SbcC; | chromosome | CDS | 423948 | 2580 | - | 0.463178 |
NA | cbdbA887 | hydrolase, TatD family | SubName: Full=Hydrolase, TatD family; | chromosome | CDS | 726380 | 789 | + | 0.484157 |
NA | cbdbA675 | putative DNA processing protein DprA | SubName: Full=Putative DNA processing protein DprA; | chromosome | CDS | 555783 | 1152 | - | 0.489583 |
NA | cbdbA416 | MutT | SubName: Full=MutT; | chromosome | CDS | 351583 | 531 | - | 0.499058 |
NA | cbdbA1706 | DNA repair protein, HhH-GPD family | RecName: Full=Endonuclease III; EC=4.2.99.18; | chromosome | CDS | 1370499 | 672 | - | 0.47619 |
NA | cbdbB42 | IS1477 transposase, orfB (fragment) | SubName: Full=IS1477 transposase, orfB; | chromosome | CDS | 1259895 | 390 | - | 0.494872 |
NA | cbdbA833 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 678883 | 555 | + | 0.436036 |
NA | cbdbA757 | conserved hypothetical protein | RecName: Full=UPF0102 protein cbdbA757; | chromosome | CDS | 618047 | 366 | + | 0.491803 |
NA | cbdbA1480 | probable site-specific recombinase | SubName: Full=Probable site-specific recombinase; | chromosome | CDS | 1165760 | 1668 | - | 0.471223 |
NA | cbdbA391 | putative uracil-DNA glycosylase | SubName: Full=Putative uracil-DNA glycosylase; | chromosome | CDS | 333972 | 621 | + | 0.483092 |
NA | cbdbA1488 | methyltransferase | SubName: Full=Methyltransferase; | chromosome | CDS | 1174814 | 1116 | + | 0.337814 |
NA | cbdbB31 | transposase IS3/IS911-family, orfA | SubName: Full=Transposase IS3/IS911-family, orfA; | chromosome | CDS | 1173656 | 279 | + | 0.501792 |
NA | cbdbA340 | AP endonuclease, family 2 protein | SubName: Full=AP endonuclease, family 2 protein; | chromosome | CDS | 293020 | 753 | - | 0.482072 |
cas1 | cbdbA1518 | CRISPR-associated protein Cas1 | RecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; | chromosome | CDS | 1203162 | 930 | - | 0.516129 |
comeA | cbdbA31 | putative competence protein ComEA | SubName: Full=Putative competence protein ComEA; | chromosome | CDS | 23434 | 654 | - | 0.464832 |
dinB | cbdbA12 | DNA polymerase IV | RecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; | chromosome | CDS | 12474 | 1173 | - | 0.514067 |
dnaA | cbdbA1 | chromosomal replication initiator protein DnaA | RecName: Full=Chromosomal replication initiator protein DnaA; | chromosome | CDS | 261 | 1335 | + | 0.494382 |
dnaB | cbdbA514 | replicative DNA helicase | SubName: Full=Replicative DNA helicase; EC=3.6.1.-; | chromosome | CDS | 414010 | 1377 | - | 0.498184 |
dnaE | cbdbA1436 | DNA polymerase III, alpha subunit | SubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; | chromosome | CDS | 1131463 | 3513 | - | 0.498719 |
dnaG | cbdbA527 | DNA primase | RecName: Full=DNA primase; EC=2.7.7.-; | chromosome | CDS | 428261 | 1767 | - | 0.486701 |
dnaN | cbdbA1145 | DNA polymerase III, beta subunit | RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; | chromosome | CDS | 933858 | 1137 | + | 0.501319 |
dnaX | cbdbA563 | putative DNA polymerase III, gamma and tau subunits | SubName: Full=Putative DNA polymerase III, gamma and tau subunits; | chromosome | CDS | 456742 | 1713 | - | 0.477525 |
gyrA | cbdbA1728 | DNA gyrase, A subunit | RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; | chromosome | CDS | 1384559 | 2430 | - | 0.503704 |
gyrB | cbdbA4 | DNA gyrase, subunit B | RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; | chromosome | CDS | 3884 | 1929 | - | 0.509072 |
holA | cbdbA60 | DNA polymerase III delta subunit-related protein | SubName: Full=DNA polymerase III delta subunit-related protein; | chromosome | CDS | 39161 | 1035 | + | 0.495652 |
holB | cbdbA509 | DNA polymerase III, delta prime subunit | SubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; | chromosome | CDS | 409522 | 1032 | + | 0.44186 |
ligA | cbdbA577 | DNA ligase, NAD-dependent | RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; | chromosome | CDS | 466695 | 2034 | - | 0.499508 |
mfd | cbdbA1211 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 975541 | 3447 | - | 0.501305 |
mutL | cbdbA1110 | DNA mismatch repair protein, MutL | RecName: Full=DNA mismatch repair protein MutL; | chromosome | CDS | 897330 | 1701 | - | 0.510288 |
mutM | cbdbA1344 | formamidopyrimidine-DNA glycosylase | SubName: Full=Formamidopyrimidine-DNA glycosylase; EC=3.2.2.23; | chromosome | CDS | 1066005 | 813 | - | 0.512915 |
mutS | cbdbA1137 | DNA mismatch repair protein MutS | RecName: Full=DNA mismatch repair protein MutS; | chromosome | CDS | 927033 | 2577 | + | 0.493597 |
nfi | cbdbA542 | endonuclease V | RecName: Full=Endonuclease V; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; | chromosome | CDS | 442384 | 672 | + | 0.516369 |
nth | cbdbA889 | endonuclease III | RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; | chromosome | CDS | 727148 | 657 | - | 0.465753 |
ogt | cbdbA1428 | methylated-DNA-protein-cysteinemethyltransferase | SubName: Full=Methylated-DNA-protein-cysteine methyltransferase; EC=2.1.1.63; | chromosome | CDS | 1129482 | 564 | + | 0.526596 |
pcrA | cbdbA1111 | ATP-dependent DNA helicase PcrA | SubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; | chromosome | CDS | 899129 | 2217 | - | 0.496166 |
polA | cbdbA1348 | DNA-directed DNA polymerase I | SubName: Full=DNA-directed DNA polymerase I; EC=2.7.7.7; | chromosome | CDS | 1067442 | 2712 | - | 0.490044 |
priA | cbdbA277 | primosomal protein N' | SubName: Full=Primosomal protein N; | chromosome | CDS | 243528 | 2448 | - | 0.511438 |
recA | cbdbA1700 | recA protein | RecName: Full=Protein RecA; AltName: Full=Recombinase A; | chromosome | CDS | 1364732 | 1014 | + | 0.497041 |
recG | cbdbA1194 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 963716 | 2223 | + | 0.507872 |
recJ | cbdbA922 | single-stranded-DNA-specific exonuclease RecJ | SubName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; | chromosome | CDS | 754715 | 1701 | + | 0.494415 |
recN | cbdbA1026 | DNA repair protein RecN | RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; | chromosome | CDS | 830182 | 1767 | + | 0.47425 |
recO | cbdbA557 | recombination protein RecO | RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; | chromosome | CDS | 453110 | 762 | - | 0.471129 |
recR | cbdbA561 | recombination protein RecR | RecName: Full=Recombination protein RecR; | chromosome | CDS | 455797 | 615 | - | 0.492683 |
rnhB | cbdbA756 | ribonuclease HII | RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; | chromosome | CDS | 617419 | 639 | + | 0.513302 |
ruvA | cbdbA398 | Holliday junction DNA helicase RuvA | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; | chromosome | CDS | 340949 | 585 | - | 0.512821 |
ruvB | cbdbA588 | Holliday junction DNA helicase RuvB | RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; | chromosome | CDS | 484087 | 1050 | + | 0.499048 |
ruvC | cbdbA399 | crossover junction endodeoxyribonuclease RuvC | RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; | chromosome | CDS | 341530 | 504 | - | 0.501984 |
sbcD | cbdbA766 | nuclease SbcD | SubName: Full=Nuclease SbcD; | chromosome | CDS | 624829 | 1248 | + | 0.454327 |
ssb | cbdbA1019 | single-strand binding protein | RecName: Full=Single-stranded DNA-binding protein; | chromosome | CDS | 825313 | 408 | - | 0.514706 |
topA | cbdbA674 | DNA topoisomerase I | RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; | chromosome | CDS | 553665 | 2112 | - | 0.467803 |
uvrA | cbdbA521 | excinuclease ABC, A subunit | RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; | chromosome | CDS | 420180 | 2835 | + | 0.508995 |
uvrB | cbdbA397 | excinuclease ABC, subunit B | RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; | chromosome | CDS | 338909 | 1995 | - | 0.503258 |
uvrC | cbdbA1134 | excinuclease ABC, C subunit | RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; | chromosome | CDS | 923652 | 1824 | + | 0.505482 |
xerC | cbdbA673 | tyrosine recombinase XerC | RecName: Full=Tyrosine recombinase XerC; | chromosome | CDS | 552741 | 924 | - | 0.478355 |
xerD | cbdbA1133 | tyrosine recombinase XerD | RecName: Full=Tyrosine recombinase XerC; | chromosome | CDS | 922578 | 909 | - | 0.481848 |