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Gene list

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COG category: Transcription
Gene type: CDS
Genomic element: pNF1

Number of genes found: 13

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# Nocardia farcinica IFM 10152, IFM 10152

>pnf11080 hypothetical protein
MFTPVELATLRCKVEDEAYSYGGYNRPLEIFNPGTAPRYLTEGPLKSLSV
GERFGPTWLLVESYLRAHPDLYDETPSSVEARQAHRSAAAKSLTTEAAEH
FRAGRLARARELVDQAELANPYETGTYDGIRSRIDRLAGIVDELGLSRPQ
ERFDGLPGGKQAQVSVGDHSFSLEPRGGGRWVVYPKTGGAEDQSTLAEPM
PTSEVMPRIRAYLASLPDPQNPTPAAHAPSAATTAAAQRDPGNPTTPGDA
PAEPLPIVIEHTAEDTLVRNTDKNNLQLRQALHDAKFNWSRPQRFWYQRR
ATDFAVRTRRVGYLRASLTRLGLPFTETNPAREESTTLTAAGVAEAAAPE
SAHEQQTTAETQHDSTAESAAAAEVSPTASGTPTPPLSSPDVTGNTTTAT
PTSQTESPADRPAGTAEVRVPERPTAPQVDVPRSTQRRIEANLAAARTLQ
LVEAESRPPTAAEREVLAKWTSWGAAPQIFDAEREEFRSDAESLRALIGE
EGWKQANRTVLNAHYTDPMIVRAMWDHLRALGFTGGQVLEPGCGAGAFIG
HAPEAASMTGIELDSTTARIAQVLYPHASIRVESFADTRLPEGHFDAAIG
NVPFSSARLHDPVHNAGEHTMHNHFILKSLALTKPGGVVAVVTSSFTMDN
KNPAARREIAAQADFLGAIRLPNGTHRRVAGTDVLTDILILRRRDGEARR
LGGPFELAVTAELPLTRGQGETESVLVNEYFLNNPEMVLGELRAGTSVYG
GLSVEVLDRGDLEQHLRAALARIAERALSEGIAHQPRELASGERRAAAAA
PGDPNEFPGHLRTTASGFEVLHTDGTYSELKVPSTQADELRALLDLRDTA
VALLENEAASAEDSDEIEALRTRLNQRYDRYVERYGAINRCSWHPTGRVD
DAGEPVMSVRRPPVMRVFRDDPHAPVVLALEDYDATTDSAVKMAIMRQRV
VAPRSPRLGADTAEDAVAICLDTHGKIDLPVIAGLLGVDDDEARVQCRGL
IYPDPADNGRYVPAAEYLSGNVRVKLDQAREAAAANPETYSDNVTALTAV
IPPDLGPAEIDARLGAVWIEAPDVQAFLNEILNDDTITVEHTKAGEWKVT
GGRRGILSTQEFGTSRVPAPKLAQALLRQAPIRVYDPDESGEARIPNPTE
TEAANEKAEQLNERFSEWVWENPVRAARLSEEYNRRFNNLVLRNYEADGK
MLTLPGLSKVYTPRPHQRAAVARMIAEPNVGLFHAVGAGKTLEMAMGVME
LKRLGLVNKPAIMVPNSMLDQFAREFLQAYPQARILAAGTEDLAGEKRRQ
FVARAATGDWDAIILTRGSFQRLEVSRETAHWYFDREIEPRRQYLAELMS
GSAKRSVVKRIEDAILKSEEKLKKKLGGPTDPGITFEQTGIDYIVVDELH
DFKNLATDTQIESAAIAGSQRAQKLHMVVEYLRDKHNGRAITGATATPLA
NSITEAYVVQRYLRPDLLEGAGIRNFDEWAATFGKTKTELEMSVDGNSWN
LKTRLVGFRNVPELQRMFHVAADVKLPEDLNLPVPKLARRADGQRAPEVI
SVPATETQLEYVRELGHRAQMVKSRAVDPTRDNMLKISSDGRAAALDLRL
VKSLGLTPGTAEEQGSPTLTTAEGAAIAGYLHSKSPSPSTARYVALFAQR
GRHESQRQESQEIGEEEFGLKLEAAADWMFEKWQAAKDQVYLGRDGQPHP
RRGGLVVAFCDLGTPGEDWNAYDELKAKLIARGAPPELFAYIHDAKNDKG
KAALFTKARNGSIQFLFGSTSKMGVGVNIQDRMVAMLHVDCPWRPADIEQ
RDGRGIRQGNQNEEIAVGRVVTEGTFDARMWAAQARKAAMVNQFMKGSLT
VREIDDIGDAALNANEALAIASGNPLVLEKAEIDIEVTKLERLRRAHQRS
QSMLQIRIRDANDAIPKLEAEIDAYTRAIEHRRPTKGDAFAAKVSGRFYD
HRGDAGDALAARLLKLIEDPRAVWKEFEDHGVAEIAGFTLDARNVPTGRA
ALVSVVFSDIGDDVYVTLDKATLQKGGTAVMLRLENAVNGLDKRLEVATG
RLETERTERERSELRLGKPFEHSERLDALRERQKEINKELLGSKETETEN
ASTDPAAAPGEAESIRSAAMHDAAAMVHQMGGAAVVSGANGITIISDRGG
RAR
>pnf170 hypothetical protein
MIPTVPTADHHAGPAANHNEGVGTLITLKEWAEQRGRSYGSIRNNWTGRD
DFPAPKQPRPRTGKGTPAPEYDSDELDAFAERWEAANRPAPFPMPDEPDE
FRTLGAIARLLGVDGKTVTQYRETFDEKVEHENRGARTVYRTRGVVEVLN
ERRGKGLTRPHLRQSSE
>pnf11200 putative transcriptional regulator
MPKQPEYLSIAATLRAEVLAGSYDAEPLPGNADLAERFDVNMKTAGRAVQ
QLVAEGLVIARPGMRAIATPPELRGTRWPMNGRYARARAARGLIFAGDVN
GNVRKDTVSREWVSAPLPIAHLLGVKEGARVFRRHSRTFIDDVATENTMM
FFPEEIVAAAPDLETAERIQVVALIEDAGHTVTRTANEIRARHTNPAEQE
LFGIDANSIVIEHIHGTYGATDEPLEAVINVRPAHGGAITFDTYEAPLDN
E
>pnf1320 putative transcriptional regulator
MTINADGGCLVETQGLDPAVALFHSLSDATRLAIVRRLACGEARVADLMA
GLELAQSTVSAHVACLRDCGLVVGRPQGRQVFYSLARPELMDLLASAETL
LAATGNAVALCPNYGTDATTTETTAEVRA
>pnf11490 hypothetical protein
MSRNPETMTPKFSWTASAAVLAGAALVVAGCSSGGSDHEQTTTPPASTTS
FVTPTETTSRVPATPPSTPLTAPAALPAEIGPVDQASVDAVAAAVARIWY
GWDTTRDLTQHDAKLRAVPLLEPRLAQLLRDYPPIAGPGADWLDLTARSA
VLTVPADGVRPGVEAGAPADTATSAVRLLEVTQKVNTPTGPMPDRHLVVG
IALVKVGAEWRVSQVGSR
>pnf11520 hypothetical protein
MQKLKEGSAMTTLGPAAASACSDKAETPIPYSGSRRVGTPRSAAHRRSTG
IRTDLIRVAVAPAVATAVLMTACGVAQAAPSGQPGITGPAEPQEQPGVST
APVLPPKPQSQSPLGVILPDPPSHAPSEYETAPPSGGVQVGPYYDTPAPS
TPAPQTYYYVEPTPQYRAPAPEPSLGEELLTLHAPAPVPEKPKYWVPVGP
ERIGSKRASIPTPDWVPIDVAWKANAYISEAQQATNTALQSVGIAPSRAD
ALAGGTVIGAAAGTCIGATVIGVPAAVFGGIAGGLIGGTIGGIAGAAMGT
LIPVPVIGTVTSGVAGTAIGAAAGAAAGAAIVGIPAAIAGGVAGGAIGGL
VGFVLLADDGSEYTGPAPDGEIPMEEREVPPPGPTLADQFSEQAAVAVDA
GEQAVDWVQEQPGGEQVLEQAAAVVDQVDQWAQSEPTVTQAVGVVEQVAQ
DVVAAAQAAPETAAVADAVVEAVTEQPAFTPDQLGPLTDAANGALAAVQG
LVR
>pnf11560 hypothetical protein
MTVVRGEGVVNKMTTRFAELSKLVPIPYPWDTREYIARVAEYRGRPIELV
PIAPGALSGTGCGTGSALWLELDDSDVIMYGADTEWHADHMIAHEIGHIL
LGHGSTGGEPAPADDLPLHELMPSLSPDAIRNVLRRQDYDSDRERDAETF
ADMVMVEATLPQRKPSRFRSTFFRARHR
>pnf1370 putative DNA-binding protein
MGAQQGDLPLPALELPTAVRPRPQTGRAEVSAPEHRWSGGVSLTPGLMTF
TGEIGDAPAHAHAAVQVLFVARGRLTLTDATGYTTPALAAIIPPGVVHQV
HTEPGTSGFLAFLDPDSATAHAALAQLDGQPRQAATTWVSAATPAPSLSV
GDPVTRPVRRSSHPVVAQALRRATDWVGGPPSLGELAADIGISVSRLSHI
FTAQVGLPYVAWRRWVRLQLGFAVVRGGGSLTAAAHAAGFADSAHLTRTC
RDLIGISPTEALIATGWRPPPARDRAVTE
>pnf11530 putative DNA-binding protein
MTRRITRGFDPAALKRAREEHPNEDLRRRAEVARLAGVGVATIQQWEAGK
KSPQVNLLFRVAAVLGVPMEQLVPIPREQRYLRDWRVLRGMLESDLAART
GISGSSIGRLEEGSAALTDENANRLAEALGITATEVRAAYDRARNRAVGA
PA
>pnf11540 hypothetical protein
MPSGHPEFFGEVVKARREYLSLTMAEVRAAGGPAQTTMVRTERGELGKPQ
KKIFAKFDTALRWVPGSAAAAYWNRETPVPLELEQPAAPPLNLAGSDVEV
PLDQVIALMELQRDLNAAAEARRELSADSVQDLATRLNREVSLIVGRWAT
TMLERNRGTEAVHPGLEVIFADALSTPVDPGTPDAEERLYRRWLLGGRSA
AGLGEELRQKFERRYRQGGGDLDADQ
>pnf11310 putative DNA-binding protein
MSPYSRRLHLGDRLRNLRQEQERSIQQVAKEADIDRTLLTRIETGQRRVA
ADVSMKVAEHLGVEQHSPLWQEFYALARDAAQSGWWEGRAFRGLSDRQAL
PADLEAGASRIRWYDFALVPGLLQSPAYVRARHDATVTNDHSSDNPVEIR
ARERRQQEALTEGGPRIEVIVEETVVRRRVVPAPAMLEQLEHLLKLIDAN
EQIDFRILPVGGELLGLRAPRSPVSIYEFAAGDPPLVFVESLTDDVLLRD
HAEVANHERLWKRLHEIALPPDESRVLIARSAEILAKEQ
>pnf1530 hypothetical protein
MNGLGTLEARVMDVLWGTSEALTVREILERLPDPYAYTTILTVLTHLHEK
EWVVRVMHRRAYLYRPTRSRAEATAEVVRGIIDSSNDPESVLLHLASIVT
EAESEAFHRGRTRPRKRSRK
>pnf120 parB, putative plasmid partitioning protein
MAGRGGRANLADLVGSTGKNSTVDGVNARTSSPAKGPTPEVMVNGAPLEI
KLEDLVANPLNPRETMDVDDLASIVEIQLQPALIIGREAYLKLWPELKSE
LGDAKYVVINGCRRLEAARKFGRTTLECVRKDEVADSRASLRAASIRENV
ERENLDVIEEAKAVEALVSDCDGNGARAGQILGKTKMWVSQRRALLKLTP
ELQAKLRAGELAIREARELGRVPAEEQVARWKAQLEKKEREQAGETSGSN
SSRRDVDTVKIVKTLKKWDADTAVLASALFVHLDRSGVHELIEQLNQMAT
SNEAE