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Gene list

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COG category: Transcription
Gene type: CDS
Genomic element: pCP301

Number of genes found: 8

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# Shigella flexneri 2a str. 301, 301

>CP0109 orf, conserved hypothetical protein
MGCVTAPEPLSSFHQVAEFVSSEAVLDDWLKQKELKNQAIGATRTFVVCR
KGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRG
KGLGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKT
QVQTLFLKLPQ
>CP0100 orf, conserved hypothetical protein
MSWLISQCAHQCTDNKKTETDAIYDKVRSSYLLSCILKKNKNVGLILHAP
SFVSVSEKIARIVMANYSRNWSNSELASAVLMSESSLKRRMYKEVGSIST
FVHKIKLTEAIRKLRRTNTPISVISSELGYSSPSYFSKVFFKYLKTYPQN
IRKKNGR
>CP0217 orf, hypothetical protein
MQMKNNTAQATKVITAHVPLPMADKVDQMAARLERSRGWVIKQALSAWLA
QEEERNRLTLEALDDVTSGQVIDHQAVQSWADSLSTDHLLPVPR
>CP0059 orf, conserved hypothetical protein
MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNASRTFVIC
LEDTLRIVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCTQ
GHGFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSV
VAPNTLFYKV
>CP0144 mxiE, MxiE, similarities to transcriptional activators of the AraC family, function unknown
MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALVEHSHAE
KCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYH
LVLYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTW
RLVNGLLDVFLHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNIT
FLVKKINEKI
>CP0032 parB, plasmid segregation protein
MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTEIKVDHD
KVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIE
ILDGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREI
GLRLVRLKEAGMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSE
LTYADYRQLAELSERLRLGDISIDEVVKNISPSIELITADDNLSEDEVKN
SIMRLITKEMSSLLDSGVKDKAVVTLLWKFDSKDKFARKRVKGRTFSYEF
GRLPLEVQDKLDRMIALVLKDNLNSL
>CP0123 virB, VirB, transcriptional activator required for tanscription of the ipa, mxi, and spa operons
MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTFVNQKTN
VRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIY
AGADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMS
YKDIAKKENLSRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYY
KGLEKANESLSSTLPILKEEIKDLDTNLPPDIYKKEILNIIKKSKNRKQN
PSLKVDSLFISKDKRTYIKRKENKTNRTLIFTLSKINKTVQREIDEAIRD
IISRHLSSS
>CP0046 virF, VirF, member of the AraC family of transcriptional activators, required for transcription of virB and icsA
MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQIAFIER
NIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRG
LNKKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTS
ISIASSLSFSDQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKL
TFQQILLDIRMHHAAKLLLNSQSYINDVSRLIGISSPSYFIRKFNEYYGI
TPKKFYLYHKKF