TitleGenColors Logo

Gene list

Applied filters:

COG category: Transcription
Gene type: CDS
Genomic element: pCP301

Number of genes found: 8

Free access
Sort by:

 



# Shigella flexneri 2a str. 301, 301

>CP0109 orf, conserved hypothetical protein
ATGGGATGTGTAACTGCACCAGAACCTTTATCCTCATTTCATCAGGTCGC
TGAATTTGTCAGCAGTGAAGCTGTACTTGATGACTGGTTAAAGCAGAAGG
AGCTAAAAAATCAGGCAATCGGAGCCACCCGGACTTTTGTTGTATGCAGA
AAAGGTACGCAACAAATAGTCGGTTTTTACTCACTGGCCACTGGTAGTGT
CAATCATACAGAAGCTACAGGTAACCTTCGGCGCAATATGCCAGACCCCA
TTCCTGTAATTATACTTGCACGCCTGGCTGTAGATGTGTCATTTCGAGGA
AAAGGGCTTGGCGCGGATTTACTTCATGATGCAGTTCGTCGTTGTTACAG
GGTTGCCGAAAATATCGGTGTGCGTGCAATTATGGTTCATGCGCTTACGG
AAAACGCAAAACAATTTTATATTCATCATGGTTTTAAGCCATCAAAAACT
CAGGTGCAAACATTGTTTCTTAAACTCCCTCAATAG
>CP0059 orf, conserved hypothetical protein
ATGGAAATAAATGTCACCGCGCCAGCATTGTTGACGGATGAGCATATACT
TCAGCCATTTGACTGTGGAAATGAGGTGCTAAGTAACTGGTTACGTGGTC
GGGCTATGAAAAACCAGATGCTCAATGCTTCTCGCACGTTCGTTATTTGC
TTGGAGGATACTTTACGTATTGTGGGATACTACTCATTAGCTACTGGTTC
CGTCACTCATGCCGAGCTTGGTCGCAGTTTGCGGCATAACATGCCCAATC
CTGTCCCTGTTGTTCTGTTAGGGCGTCTGGCTGTTGATGTTTGTACCCAG
GGGCATGGTTTCGGTAAATGGCTACTAAGTGATGCCATTCACCGGGTTGT
CAATCTGGCTGATCAGGTTGGCATTAAGGCTGTTATGGTACATGCAATTG
ATGATGACGCCAGAGCATTTTATGAGCGTTTTGGTTTTGTTCAGTCAGTT
GTGGCACCTAATACCTTGTTTTATAAAGTCTGA
>CP0217 orf, hypothetical protein
ATGCAAATGAAAAACAATACCGCACAAGCAACAAAAGTAATTACCGCGCA
TGTGCCATTACCTATGGCTGATAAAGTCGACCAGATGGCCGCCAGACTGG
AACGCTCCCGGGGCTGGGTTATCAAACAGGCGCTTTCTGCATGGCTTGCC
CAAGAGGAGGAGCGTAATCGCCTGACGCTGGAAGCCCTGGACGATGTGAC
ATCCGGACAGGTTATCGACCATCAGGCTGTACAGTCCTGGGCGGACAGCC
TCAGTACTGACCATCTGTTACCGGTGCCACGCTGA
>CP0100 orf, conserved hypothetical protein
ATGTCCTGGTTAATATCTCAGTGTGCTCATCAGTGCACTGATAATAAAAA
GACGGAGACAGATGCCATTTACGATAAAGTTCGGAGTTCTTATTTGCTTT
CATGTATTCTGAAAAAAAACAAAAATGTTGGGCTTATTCTTCATGCACCA
TCATTTGTTTCTGTGTCTGAAAAAATCGCCAGAATTGTGATGGCAAATTA
CTCCCGTAACTGGAGTAATTCCGAGTTGGCCAGTGCGGTTTTAATGAGTG
AATCTTCTTTAAAAAGAAGAATGTACAAAGAGGTCGGTTCTATAAGTACA
TTTGTACATAAAATAAAGCTTACAGAAGCTATCAGGAAATTACGAAGGAC
AAATACTCCCATTTCTGTCATATCATCTGAGTTAGGTTACAGTTCACCAT
CGTATTTTTCTAAAGTCTTCTTTAAATATTTAAAGACATACCCTCAAAAC
ATAAGGAAGAAAAATGGTCGGTAA
>CP0144 mxiE, MxiE, similarities to transcriptional activators of the AraC family, function unknown
ATGGAAGGGTTTTTTTTTGTCCGAAATCAAAATATAAAATTCAGTGATAA
TGTGAACTATCATTATCGCTTTAACATTAATAGTTGTGCAAAATTTCTTG
CTTTTTGGGACTATTTCAGTGGTGCTCTAGTAGAGCATAGCCATGCTGAA
AAATGTATTCATTTCTATCATGAGAATGATCTTCGGGATAGTTGTAATAC
CGAATCGATGCTTGATAAGTTAATGTTAAGATTCATCTTTTCATCTGACC
AGAATGTAAGTAATGCACTGGCTATGATACGAATGACTGAGTCATATCAT
TTGGTTCTTTATCTTCTGAGAACTATTGAGAAAGAAAAGGAGGTAAGAAT
AAAGAGTCTGACAGAGCATTATGGTGTGTCGGAGGCTTATTTTAGATCTT
TATGTAGAAAAGCTTTAGGGGCAAAAGTCAAAGAACAACTGAACACTTGG
CGGTTAGTAAATGGTTTATTAGATGTATTTTTGCACAATCAAACAATCAC
TTCAGCTGCCATGAATAATGGGTATGCATCAACATCCCATTTTTCAAATG
AGATAAAAACACGACTAGGCTTTTCTGCAAGAGAATTATCGAATATTACT
TTTTTAGTGAAAAAAATAAATGAAAAAATTTAA
>CP0032 parB, plasmid segregation protein
ATGGAAAACAGAAAGCACCGACCGACTATTGGCCGTACGCTGAATACAAA
TATCCTGAATAATACTGAAGAAATATCGGCTCCAGTTCATGTATTTACCC
TCAATACTGGCCGAAAGGCAAAATTTACTGAGATCAAGGTTGATCATGAC
AAAGTGGATACTCAAACTTTTGTGGTCGAAGAGGTGAATGGCCGCGAACA
GACAGCCCTGACGCCGGACTCACTAAAAGACATCACCAGAACTATACGTT
TACAACAATTCTATCCATGTATTGGGATTCGGACTGGCGATCTTATTGAG
ATTTTGGATGGTTCCCGTCGTCGGGCAGCAGCTTTGCTATGCAAGGTTGG
ATTACGTGTACTTGTAACGGATGATGAGCTTACTGTTTCTGAAGCTCAGC
ATCTGGCGAAAGATTTGCAGACGTCACTTGAACATAATATTCGTGAAATT
GGGTTGCGTTTAGTACGTCTCAAAGAGGCCGGTATGAACCAGAAGCAAAT
TGCGGAAAGAGAGGGATTGTCGGCAGCTAAGGTGACTCGTGCCCTCCAAG
CAGCGTCCGTACCTAAAGATTTTGTGTCTCTTTTTCCTGTTCAGTCTGAG
CTGACATACGCCGATTACAGGCAACTGGCTGAATTAAGTGAACGACTGAG
GCTGGGTGATATATCTATTGATGAAGTTGTGAAGAATATCTCGCCGAGTA
TTGAGCTTATTACTGCTGATGACAATCTTTCTGAAGACGAGGTTAAAAAC
AGTATTATGCGGCTTATAACCAAGGAAATGTCTTCATTGCTTGATTCAGG
AGTAAAGGATAAAGCGGTTGTAACTTTGTTATGGAAATTTGATAGTAAAG
ATAAATTTGCTCGAAAACGAGTAAAGGGACGTACGTTCTCATATGAATTC
GGCAGATTACCGTTGGAAGTTCAGGATAAGTTAGATCGTATGATTGCTCT
TGTACTAAAAGATAATCTGAATTCGCTGTGA
>CP0123 virB, VirB, transcriptional activator required for tanscription of the ipa, mxi, and spa operons
ATGGTGGATTTGTGCAACGACTTGTTAAGTATAAAGGAAGGCCAAAAGAA
AGAGTTTACACTCCATTCTGGTAATAAAGTTTCCTTTATCAAAGCCAAGA
TTCCTCATAAAAGGATCCAAGATTTAACCTTCGTCAACCAAAAAACGAAT
GTACGCGATCAAGAATCCCTAACAGAAGAATCATTAGCCGATATCATAAA
AACTATAAAGCTACAACAATTCTTCCCTGTAATAGGAAGGGAGATTGATG
GTAGAATTGAAATTCTGGATGGCACTCGTAGAAGAGCATCTGCAATATAT
GCAGGAGCAGATCTTGAAGTTCTATATTCAAAAGAATATATATCTACTCT
TGATGCCAGAAAACTAGCAAACGATATACAAACAGCAAAAGAGCATAGCA
TCCGAGAACTTGGTATTGGTCTTAATTTTCTGAAAGTATCAGGGATGTCC
TATAAAGACATAGCCAAAAAAGAGAATCTGTCTCGCGCGAAAGTCACTCG
TGCCTTTCAGGCAGCAAGCGTTCCACAGGAAATAATATCTCTATTTCCAA
TCGCGTCAGAACTTAACTTTAATGACTACAAGATATTATTCAATTATTAT
AAAGGACTTGAAAAGGCTAATGAATCTCTTAGTTCTACACTACCAATATT
AAAGGAAGAAATAAAAGACCTTGATACAAATTTGCCCCCGGACATATATA
AAAAAGAAATTTTAAACATCATAAAGAAAAGCAAAAACAGAAAGCAAAAC
CCTTCGCTAAAAGTTGACTCGTTATTTATTTCTAAAGACAAACGGACTTA
CATAAAAAGAAAAGAGAATAAAACAAACAGAACTCTAATATTTACATTAT
CTAAAATAAACAAAACAGTTCAGAGAGAAATAGATGAAGCTATTCGGGAT
ATAATTTCTCGCCATCTATCGTCTTCATAA
>CP0046 virF, VirF, member of the AraC family of transcriptional activators, required for transcription of virB and icsA
ATGATGGATATGGGACATAAAAACAAAATAGATATAAAGGTTCGCTTGCA
TAACTATATTATTTTATATGCAAAAAGGTGTTCAATGACGGTTAGCTCAG
GCAATGAAACTTTGACTATCGATGAAGGGCAAATTGCTTTTATAGAGCGA
AATATACAAATAAACGTCTCCATAAAAAAATCTGATAGCATTAATCCATT
TGAGATTATAAGCCTTGACAGAAATTTATTATTAAGCATTATTAGAATAA
TGGAACCAATTTATTCATTTCAACACTCCTATTCTGAGGAGAAAAGGGGG
TTAAACAAAAAAATATTCCTCCTCTCTGAGGAGGAGGTTTCTATCGATTT
GTTCAAATCTATAAAAGAGATGCCTTTCGGCAAAAGAAAGATCTATAGTT
TAGCTTGCCTTTTATCAGCTGTTTCTGATGAGGAAGCTTTATATACTTCG
ATATCGATAGCTTCTTCTCTTAGTTTTTCTGATCAGATAAGGAAGATTGT
TGAAAAAAACATCGAGAAGAGATGGCGTCTTTCTGATATTTCAAATAACT
TGAATTTATCAGAAATAGCTGTTAGAAAACGATTGGAGAGTGAAAAATTA
ACATTTCAACAAATCCTTCTTGATATTCGCATGCATCATGCAGCAAAGCT
TTTATTGAATAGTCAAAGCTATATTAATGATGTATCAAGACTTATCGGAA
TATCAAGCCCATCTTATTTTATAAGGAAATTTAATGAATATTATGGTATA
ACTCCAAAGAAATTTTACTTATATCATAAAAAATTTTAA