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# Yersinia pestis biovar Medievalis str. 91001, 91001

>YP3854 putative ribonuclease inhibitor
MVKVVFDFNHIPDLPAFYRAFSQNFALSEDFGANLDALWDVVTGEIALPV
EIEFVHFSRRHQRRFAAIVLLLEEAEEELAGRLHFNVVDEHIV
>YP2552 putative RNA-binding protein
MRLNTPFKPRLSDDQPLSGQQRRCHMLLMLFMPARKVQLDTISQFNGVDL
ATTRQDIAEVASEIQRFYHLELNASADDYYQINGSRLDKRLCLIHWLRRG
LRYCPHFIEHYFSPDLYQALAWNNGLLSSALRRSTLRQSTLRQSTLRQSI
LRQSTLRQIVYQCEPHLNRQLSEKDRQFLQLYLAYCVWENQQHTVPQLSM
TQQQWLEQKPARVAADHLFNALNRLLIPPLGLIERDMLILMLTMIKAHHY
HSTQSPEDARLIAAIKQLIHRFKRLSGMHFSCDDSLVSQLFAHLAPAIER
CYFNIGIDHSLPKDISKMYPRLLRTTQQALIKFEQEYQIRFSIEEVILIA
ISFGAWLIQGNALQEKQILLLTHDNPILEAQVEQQIRELTLLPLHIKYLS
HDVYLQSGAPAGTAVVLTPYVLQSTESAPPLIQISFPLTEPQSIQLCRIL
ELP
>YP0859 hypothetical protein
MSPNLIAEHDKILKWPEVNDLAYGHFLWLPEFKTPSGDLFRALLEDDGSN
MAHLHIKERLSGEHIASYVLTFDLTPPLDLGQRLPQVESAYVSQEYQGGG
VSTATYKAIIDHYGAVISDTYQTEGGMVLWLFGLSKDDSIQLTILNVDGH
TLDYKINEHGERISFQADRKSLLEIADTVWGNPDNVELSNLETLGFTPSW
RNHSNHVLAATKSII
>YP1937 putative phage protein
MNTQLSFRNTQFDIANHSGQIWLRGTEIAKALGMEKSDAVSQIYNRNSDE
FTEAMTLTLKLSVKGFGNGKSAKDVRVFSLRGAHLIAMFARTEIAKEFRK
WVLDILDKEVGNTPPVITPVTKVPAELKSRYRVRVIIYDEMFGNCLELIG
KADTFRTIASGIATDLGFKPTGFVAVQMDSSKFKRIY
>YP2557 Predicted transcriptional regulator
MTKTLKNVKILFRVHQQVTLAMRLTSKGRYAVTAMLDVALHSQDGPVPLA
DISERQGISLSYLEQLFSRLRKNGLVASVRGPGGGYLLGKDASAIAVGAV
ITAVDESVDATRCQGKEGCQGGNRCLTHTLWRDLSERISSFLNNITLAEL
VNNQDILEVADRQNNDTRRTANGRPQETINVNLRA
>YP3714 hypothetical protein
MKKTNKLLISIVSAISFSAYSNDINDAKVCFYELENFSGESFCAYEGESQ
STINNDFDKKIKSISIPPGMVITLYDGIDFTGKKKKLKNDVNLDGMKSFG
LYNKISSYHIDPAVCFYTEDNFQGDSTCLAASQHIDLYSDAEGFANSNRT
VLPIHNDSIQSIKVPLGMMTTIYKNDQFNAPFFELTENINLETLKTLAMD
NQLTSLKASEKKGLYCDQKCIILEKHEINLPEVFGEYWHDSRLVNKQVIL
SFNSQENGINDDYKINLTNGPSVRILKNEIIFSDYNMITKFSFDRIDKFD
KLSFILQIEKDIVQVQYIQTLDDQLIDLSPIISFKWTHMIDDTPTLTIKN
KNTDKPLILNKSIITADTGDQNWEKRDIENTSQIICAFTPFLNLYNYIVQ
GTCRQLDGIIFKADQYFNSNTKGKTLHIAGKSFPLKPDLLTELNNDGLHE
NKMLLTYIDNVNNNQSLSLPAVAKTCMVSIHSILSTRQTRQIRPACIDWT
LEIMTDFTLLFGSSLRTWNTEYFGRIIQSIITTGNTGVAVENTEIEKRLS
HAVKKAIMSQSIDSTLDHIKTAFDYAQLNYFDYSLFYVSEDTPSQVEQLP
LGIYELLLPSFIYRPIPPIIIENSERVEQHELAFEIEILPSLFPEDARPS
DTEIEHARELRQKISETIAQWGQQYQGAHAIDDVDQEVNADENAALSQLL
HAGHIVTGIIHRRLILNRPGEIYVVVKLRGEIIAIVLADRFNNRDEVELV
ASATLPDYVLSPDSEGTVRGAGTAAVYELARYLQQQGAKTLFSETISQPS
ARVKQKVGFTFKSEF
>YP3987 Predicted transcriptional regulator
MNIDHGARQPQSVGERLLLLLKTHGPLQAGEAGNILGTTGEAARQQFVKL
AKKGLVVAEAQTRGVGRPIQLWQLTESGNTHFPDAHGELAVQLLRLIRTQ
LGDNALELLIDSREQETRDQYCQAMVGVSNVAERVERLVAIRTGEGYMAQ
SQVEADGTILLIENHCPIWAAAASCQRFCRTELAVFQQALGVPVERVEHI
LSGARRCTYRIHPE
>YP0135 Predicted RNA binding protein, Contains S1 domain
MNEPLSRIIASELQARPEQVISAIRLLDEGNTVPFISRYRKEVTGGLDDI
QLRQLESRLGYLRELEDRRQTILKSIEDQGKLTDQLAGAINATLSKTELE
DLYLPYKPKRRTRGQIAIEAGLEPLAERLWQDPQQDPEHTALAYVDADKG
VADTKAALDGARYILMERFAEDATLLAKVRQYLWKNAHLVSKVVEGKEQE
GAKFRDYFDHHEPIAQVPSHRALAMFRGRNEGVLQLALDPDPQFDEPPRE
SQGEQIIINHLDLRLNNAPADGWRKAVVNWTWRIKVLLHLETELMSTLRE
RAEDEAINVFARNMQDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKL
VAFDTIYPHTGQAAKAAAVVAALCIKHQVELVAIGNGTASRETERFFVEL
QQQYPAVTAQKVIVSEAGASVYSASELASQEFPDLDVSIRGAVSIARRLQ
DPLAELVKIDPKSIGVGQYQHDVSQSQLAKKLDAVVEDCVNAVGVDLNTA
SVPLLTRVAGLTRMMAQNIVNWRDENGRFRNREQLLKVSRLGPKAFEQCA
GFLRINHGDNPLDASTVHPEAYPVVERILAATEQALQDLMGNANALRNLN
ARDFTTERFGVPTVTDILRELEKPGRDPRSEFKTATFAEGVETLNDLTPG
MILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADKFVDDPHKVVKAGDIV
KVKVMEVDLQRKRIALTMRLDEQPGETHSRRSNNGTGSERTNNDNRGVNR
PHNDAKGHNAPNRAPAKGRSDSSSAGNSAMSDALAAAFKKR
>YP1069 putative DNA-binding prophage protein
MIMAKARLHDDAMVQLLMEDPEFAQVYLHQALLDIDEEGGQEAFLMALRH
VVEARGGMASVAKKAGVSRETLYRTLSPSGNPTLKTLLSVVSATGFQFSH
LASITA
>YP0857 putative regulatory protein
MATRYIKWPEMLLLVGKSRPTIWRMYSKRNEFPKPERTKSGMFLGWPEAS
YEEWVQSKKC
>YP3240 hypothetical protein
MNLGAISTLLLWLLAMKLTIERLITLTHQDVIDLAKIWPNQQPAAWQQWI
TEGRPLFAARFNERLLGAVKVAVYDQQAELQDLCVREVTRRRGVGLYLIE
ETLRQLPEIKHWYLNGGDLTAAERPQMNSFMLACGFSHEAQGWRR
>YP0446 putative exported protein
MLLSTKQFRHYTLALLLASGKPVDADDIYDKLSCSGPTLTRALKELRETY
NAEIRYSKSTHSYQLTEKGTLTPKVLRHIKDAIASHMIIKSHEELVASHV
ILDKEKKRSISLSLRMSVIRKIDRVVNQLEITRSEAVEILVNTYISELML
SVSQPPKGKKSV
>YP3341 putative regulatory protein
MPTSYLKEDTARQIVQRTMSIIDYSVNVMNEYGVIIASGDPRRLHQRHEG
AVLALTENRMVMIDEAVAGRLKGVKPGINLPIIFRQRMVGVIGISGEPDK
VQAYAELVRMAAELILEQAEMLEQNQWEKRYREQLTSQLIAQQGSAASVA
SMAAYLGLDLTLPRIALIVSLREQEHTQQRDLVEILSNHSRETLVTLHGF
ERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNIYVGGIFDGLD
GLQRSYLSAQAMQETALRQKLTQPVMFYQDHFLTVLLNDFAGSWQAGELS
SAWQTLRQADTKDVLCHTLRCYFVQNCDLSQTSKQLHIHVNTLRYRLQKI
EAITALKINELSSIIQLYIGMKIER
>YP3506 Putative transcriptional regulator
MWCFSKRCPRDFILIYPHTGTRSSINSATSLYNTMNLQHHFLIAMPSLQD
PQFKRSVIYICEHGEKGAMGLVINKPLEQLTVETILEKLKIKSPSRDPAI
RLDNVVLAGGPLAEDRGFILHSPQEGFASSIHISPETMITTSKDVLETLG
TSGQPKNLLVALGYASWRQGQLEQELLDNVWLTTEADTHILFNTPIAERW
QAAANKLGINIFNIAPQAGHA
>YP3047 putative regulatory protein
MHTIIEKNMNKQSHIVNGWLIDLTSGFITHQETREKKRLGEYQLKLINVL
LEHAGEILSRDELTNLVWKRRVIGNNSLPNAIHTLRVALGDENKQQRIIQ
TIPKIGYLLDASFCEIIDATKETETAEQTALAQTDDEEIVAPLNGVTLHE
AVAASASDIAHSRIAETNEEPADTAINAPLPPTQTGPVVMTRQHVTASQR
PPWNIFSYWSRVAIALLVLITAVAFYRLFPQNKGVSYTAIEQDQEAYSNI
RLFQLVDSALSLQQEEKLNQRLKDTLYAINKQSKAKSMSINIYYYVSLRR
LDFTFSVESQCENKQLGMTIYHWRQNSQLLNNLIYREMERKINEMVNC
>YP2786 conserved hypothetical protein
MSMSEEYQPINCDDYDNLELACQHHLILTLKLRGGEIVEGKASDLLLRKK
VEYLIVEQEGTMRELRLDHIASFSHPEIGTVVVSAS
>YP0535 Predicted transcriptional regulator
MSFQMGVSRVNGYSGVYVQLTSFTDYGLRALIYMASLPDGQMTSISQVTE
VYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPADQILIGDVVRQM
EPLTLVNCSSDFCHITPACRLKQVLNQAVQSFLKELDNYTLADMVKDNSP
LYKLLLVE
>YP1776 Predicted transcriptional regulators
MTLREDYFGYICPKSSLKPSYAIYSLYVSTYQKVSVRVTKLQNMNGNISF
PEQLRRGELLNVDCPSREILKRVTSRWGVLVLIALSNETLRFSALRRKIG
GVSEKMLAQTLQHLEEDGFIDRTAYPVVPPHVEYSLTPLGKEIQEQVEGL
TVWLETNLHRIMEQRQQRSV
>YP3561 Predicted transcriptional regulators
MFGHSKHDHRHGGHRHEGQGHCGEKMRRGGRHNVMAEDAESARGGKHGRG
RGGKMHRLFEHGDLRVVLLALLNKTPSHGYELIKAIEEASSGLYVPSPGV
IYPTLTLLEEQDFVTPVATGNGRKSYQITDAGKFELQKNQAMVDVIFARL
AQVNRHKEGNLAEGIADAMHRLRHILRSNMMRADLTPEQVARINTALLAA
VDTIEEELQPVGVQPAAVDTTVQEKN
>YP0747 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
MHCPFCAAVDTKVIDSRLVSDGSQVRRRRQCLDCNERFTTFEVAELVLPR
VIKSDEVREPFNEEKLRRGMLKALEKRPVSSDDVETAISHIKSQLRATGE
REVPTKMVGNLVMEALKRLDKVAYIRFASVYRSFEDVREFGEEIARLQD
>YP1678 aRO81, putative aminotransferase
MVDLCGRTAMNKIITDQRHQFSSRVNDLHPSPIREILSVIDRPGMISFAG
GLPAVESFPHMSLEGMPQPMLQYGASEGELELRQQIAQNLCERGLSCTEE
QVLIISGSQQGIDLVAKLFIDEGTPVAVESPTYLAALQVFRFFGAQFVAY
DSTQPDIDKLRTEKPAFAYTIPTFQNPSGHCLDTEQRELLAKTCDDIMLP
LFEDDPYHDLVYDPCERKPVCASLQRASWIYQGSFSKSLSPALRLGYLVA
SSELIPYLTRLKQAADLHSSRISQWLVLQQLRSPRHTEHMHELAAYYRTR
RDAFEISLQRHFGSLATWKKPAGGLFFWLTLNRCIDTRQLLPKALASNIA
FMPGESFLPHSSEGCGQLRLNFSHATEEQADVGLKILAGLVQEHA
>YP1705 aRO82, putative GntR-family regulatory protein
MNFIYNRWLMTRYEQLAQQIRAQIQSKVWQAGDKLPSLRESCKQSGLSLM
TVVQSYQLLESQGWIVARPQSGYYVASRPTQLPQPQRGNKLHLDEQVDIN
TFIFNVLQAGKDPAIMPFGSAFPDPSLLLQPRLSRALASVARKISPQSSV
TNLPPGNESLRRNIAQRYAACGMNVSPEEIVITAGAMESLSLSLQAVTQP
GDWVVIESPAFYGALQAIERLRLKAIAITTDPQQGVDLEALEQVISQYPI
KACWLMPHFQNPMGATMPWSQKQRLVTLLQQKAISLIEDDVYGELYFGAE
RLLPAKALDQHRQILHCSSFSKCLAPGFRVGWVAAGEHAQRIQHLQLMST
VSASVPTQLAIADYLSQGGYDTHLRRLRRVMEQRMSTLHQAVVEHFPKNI
KISHPAGGYFLWLELEPPFNASELYRRALEQGVSIAPGRMFTTGSQFDHC
FRLNASFAWSEQSAKAIRILAKLIGQLTNERR
>YP2712 aRO83, putative GntR-family regulatory protein
MRSLLSDLLLQRLTPATLSTVPVAKNKRLYRALRLSILDGSIRAGSRLPA
SRDLAQELEISRNTVLAAYDQLQAEGYIQTRTGGGTFVTTDLPEDGLNKM
DTLPQHSGPEPDVALSTRATHLLNHCGVASYQWGTFMPGVPDVRLFPHEV
WRKLQTRLSRHLNPENLTYSVHGGCPQLQQALADYLRIARSVSCTPDQIL
ITAGTHQALDLLAKMLCDPGDHAWIEEPSYWGIRNVLTINGIEVIPVSVD
ENGMDPLDLPFESRSPRLICVTPSHQYPLGSVMSLTRRQRILALAQQHNC
WVVEDDYDSEFRFSGSPIPALQGLIPDAPVIYLGTFSKTLYPGMRISYMV
LPRPLAQQFKVAHSELYRGGNGMMQLTLAEFIREGHYASHIRRMRLIYGK
RRAALVGMIKQQLGGSFLAEYGNAGLHLILALPESIDDVALSAELEQKGV
LVRALSGYYLKSPPRRGLLLGYGCVPEEAMEAVFAPIVSYLRRRINPDDA
I
>YP0494 acrR1, putative TetR-family regulatory protein
MQREQVLSNALNLLEQQGLANTTLEMLAKALSVEVSDLTRFWPDREALLY
DCLRYHSQQIDTWRRQLQLDETLSPQQKLLARYQTLSEQVQNQRYPGCLF
IAACSFYPDTEHPIHQLAEQQKQASLHYTKALLQEMDADDADMVAQQMEL
ILEGCLSKLLIKRQLADVEVAKCLAEDILTVAQCRKNGALS
>YP0800 acrR2, putative tetR-family transcriptional regulatory protein
MARKTKQKAEETRQQILDAAVREFSAHGVSRTSLTDIAIAAGVTRGAIYW
HFKNKVDLFNEVWELSESKIDQLEIEYQAKYPDNPLRILRELLIYILVST
REDRRRRALMEIVFHKCEFVGEMTSVHDARKVLDLASYERIESVLQGCID
ANQLPVNLNTHRAAIIMRAYITGLMENWLFMPESFDIKQEAPVLIDAYLE
MLGQSFSLRNEMNSRVSD
>YP0974 acrR3, Transcriptional regulator
MSHSTPHSVTPPSPATTRGEQARQQLLQAAIELFGELGLKGATTRDIAQR
AGQNIAAITYYFNSKEGLYLAVAQYIADFIQQAFSPLAQEIDHFLQLPAE
HQPPEQQLHYIRQGLLAFSHLMTQPETLNLSKIMAREQLSPSEAYPLIHT
QAIAPLHQTLNQLLAAFTGTDASATKTIIHTHALIGEVLAFRLARETIRR
QAGWKSIGEAESQLINQVLIEHIDLLLNGLRAKATL
>YP2164 acrR4, TetR-family transcriptional regulatory protein
MNKIQHTHVDTREHLLATGERLSLRLGFNGMGLSLLLTTAGIPKGSFYHY
FRSKEVFGEAMLQRYFDRYDAEMESLLAGSQGDKRHHLLHYFAQSIANYC
GSECHNACLAVKLSAEVSDLSEPMRHALDIGTARVIGRLQDAIEAGIDEG
SLRTVLSPAATAETLYALWLGASLRAKVKHSVAPLTCALGSIELILQPA
>YP3135 acrR5, TetR-family transcriptional regulatory protein
MGTIMGVRAQQKERTRRSLIEAAFSQLSAERSFASLSLREVSREAGIAPT
SFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFM
EFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMP
RSFTEAQAEAMVTIVFSAGAEVLDVDIEQRRQLEERLVLQLRMISKGAYY
WYRREQEKLAASRVE
>YP3207 acrR6, putative TetR-family regulatory protein
MNTQNKQEGFSPSLTTIRARTRRLLIDTAMSMYERGAFPSITEVASAAQL
SRATAYRYFPTQSALVSAMVDESLGPILAWQPTQPDARQRIAELLSFAYP
RMLQHEGVLRAALHLSLQQWADARNSDSNNNSNDSNNSSNEEKLIRGNRK
RLLKLAVEPLEETLAPEALQRVIHAFSLIYGSEVFMVLKDIWHLDEAGIQ
DVTQWMGKAILLQAETDSQLAAQDKTHS
>YP3527 agaR, DeoR-family regulatory protein
MKAAIERRMEIFNIVTQQGKARVEDLAERFNVSSVTIRSDLSFLEKNGYI
VRSHGSAIPNTGVIAELTVHEKRRRNSGVKSLIGQAAAKLINSGDTVILD
SGTTTREIAANLRSVENVVVMTNGLDVAMELASAPGVEVLISGGVLRKSA
MSFSGSQAEASLKNFRFDKVFLGVDGFDLRVGITTYNEQEASLNRLMCDI
SEQIIAVADSTKFGKRSCHMIREFGDIDILVTDSDIPEEYVQRLRDMRIE
VIIAEKEK
>YP1064 alpA1, Predicted transcriptional regulator
MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEV
DEWVIIRINQREEGRN
>YP1646 alpA2, putative transcriptional regulator
MHPLFRAHQLSLRLPLCFFILRPPFISVTGGYMTSYQLLRLRQVEQKTGL
KRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSDR
>YP3576 alpA3, putative regulatory protein
MTYSSLIRLPEVLKRTGFSRPWVYKLLKQKRFPPPIKIGGRAIAFVESEV
NDWIEQQIAHSRGNKQ
>YP0413 araC1, putative AraC-family regulatory protein
MKSIQFILFRQEGVLRSDGERYVIPAGKLVIADEQASASAFANSAITSIL
CYPIDLFPIYQDLARRTLPLNKGHLPHAVNDKYKVLPANVEIIQAAEELI
NIERVASLRFLYLYCLGIDNVYFSKLLDSIVGTNNELLEFFEKNRLNPWS
VSRYANELGISTRKLNFLFYEKFGMSAKQWLLDQRLKKGCELLLSTRLRV
ADIAMECGFSNHAHFSDSFRRRFQQCPSHMRSLIE
>YP1478 araC2, AraC-family transcriptional regulatory protein
MSQENHLALVCALSKWVETHLGRVIYLEELAAYSGYSLWHMQKIFKDVTG
VSLGKYIRERRLAGAVYQLRSSDSTIFDIALDFGFGSQSHFTYMFRKHYG
ITPYDFRQNTDIDLNIALPLHAIHQKQA
>YP1556 araC3, putative AraC-family transcriptional regulatory protein
MMKHKISFCPGVGSAAHIIQHSELLLTSVYIEHPLLIMVNRGYKIIRWEN
QECVILPGEIAVINSGQTIDIINGLSNDDLFFSQQLHCDPSLIAAFAHHP
TSADLGVIPGVMAIRNLAPEFINTFGNIFNSISENSDIPTVIIKHRMLEL
LLWLAQRDVKFILNDGNGLSEKVRRCLASDPHKIWSASEVAEHMTMSEVV
LRRKLAAENILLRDLMIDVRMTSALRLLQGTDWPISLIANQIGYESSSRF
AERFRKRFGFAPTAIRGHHRLQPVESESPIHSVNRYLKPSYS
>YP2041 araC4, putative AraC-family transcriptional regulatory protein
MMSEDILFIEELIEWIEINLEKRPTLDDVAKISGYSKWHLQRKFKSIVGL
QLASYIRGRVLTRAAVALRISRKPIITISDELGFDSQQTFTRTFTRTFKK
RFGVTPNSFRQMNHWDVQGMIPRFGFYENYTPEIKQVTLPGKELVGFTRR
LDFEEYNGCAVQRSSCMAMKDEILLDFFKEVNFACQRIYSLFSVKDVDGQ
QGQKSVYYSTAIDKERKHEIQGSREIDHIAIPEGEFLSISHQGSAKECVK
FATYLFNNVLPKLRDEVGRGIEMEVIEIDHCHAESKLRDISVVYRYLMAV
N
>YP2401 araC5, putative AraC-family regulatory protein
MTEPDFPVVTSRIPQTLSFRCEAFNANTEFLPHTHPFGQLICVKSGVLAM
SIGGQRFLAPPEFIVWIPAGMEHSSYNRKPMHFRAIDIALDFCTELPASP
GLMNVSPIFNAIVEDCFTRDLLMPETQQDRRLAHVLIDQLKVSPVQRTYL
PTSQDKLLSPILAALERCPADSTSLALWAKRVYTTERTLSRRCQQELGMA
FSEWRQRLRFLHAISLLEQGKTVNSVALDVGYSSASAFIAMFQQISGTTP
ERFRRGNSGLY
>YP2994 araC6, AraC-family regulatory protein
MVDVIDIQAQMADKIARLAQGDGLTPSTVSGVKILYSTVHQPRTPVMYTP
SVVIIFQGHKVGYLGSKVFQYDPKNYLILSVPLPFECETFASPEIPLAGI
SIQVDSQMLQDLMMTMGDDELEKPPGNTSGVNSAPLTEEMLCATERLLDV
MSIARDARVLGPQIVREILYYVLCGSCGGALQALVNRHGHFNQITKTLRR
IENHFADNLSVEQLAAEVNMSVSAFHHNFKAVTNTSPLQYLKSYRLHRAR
MMMLHDGLKASTAAIKVGYESASQFSREFKRYFGHTPSEGVAKQRIN
>YP3780 araC7, putative transcriptional regulator
MTIKLISQLTALVSEPNSIHHVYFAKSLRAAPLLAQQVNFPRMELIIEGS
QAMIWDRLYDDFHHKDEYIMHRGDILFIPSGGWNIPQWEQPVITLSILFG
KQSLGFSLLSWDGESVVHKEMESVLRRGPRVGAYILQALNEMSLMQREQT
TVQLIVRSLISHCIDLLRNQVKTPSRSQTLFESIREYIERNYSEPLTRES
VAHVFHISPNYLSHLFRNAGNIGFNESVNSARLENAKILLKFYEMKIKEV
ANVCGFIDSNYFCRLFRKETELTPSEYRQQYRSNMMERDVI
>YP3928 araC8, putative araC-family transcriptional regulatory protein
MACHDEPGYSLNFCHQHRVGRMEKNMQRTQVVANWYRESDEFSTLVNYRI
LRAGHIRAADNFHVRRQSVAGHELIFCLNGSGFIRLENNLHEVKKGNLAW
LPVRWPHEHFPNKQEPWEILWLRIDGAKLNNIMQILDVAQQPVFEFTSPE
TITDIYHRLFDLMQSHTLVADAHCDVLCSQLIYTLLENRSFDATKSPVIS
HRGLGRLIYQIHSHYNDDWDIDKFMQYCQVSKSQLFRLFQETFNQSPLRW
LKNYRLSQARRLLVETEETISRIAGLVGYNDPLHFSRDFHRSVGLSPSDF
RRQERQLDNDRHD
>YP3725 arcA, aerobic respiration control protein
MQTPHILIVEDEIVTRNTLKSIFEAEGYVVYEANDGAEMHHILSENDINL
VIMDINLPGKNGLLLARELREQASVALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLSRTMNLSSVGEERRLVESYKFNGWELDINSRS
LVSPTGEHYKLPRSEFRAMLHFCENPGKIQSRGELLKKMTGRELKPHDRT
VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLEE
>YP0566 argR, arginine repressor
MRNPAKQEDLIKAFKALLKEEKFSSQGEIVLALQEEGFENINQSKVSRML
TKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDVDYNDSVVVINT
SPGAAQLIARLLDSLGKAEGILGSIAGDDTIFTTPARGFTVKQLHEAILR
LFEQEL
>YP0341 arsR1, arsenical resistance operon repressor
MTTLTPLQLFKNLSDETRLNIILLLKASGELCVCELCHRLNEAQPKISRH
LAMLRESGLLLDRRAGKWVHYRLSPHIPAWAAAIIEQTYLSQRDEITLLA
QGNVTPDSKMLCN
>YP1544 arsR2, Predicted transcriptional regulators
MDCAKEKLMSKLVIKTATEDDFFTRGQQLATLADAGKSLPEEHTITFEDP
LEMVRVLSAARIVLLRTVKMYPGSITSLSTRLKRDRSTVTRDVAILKKAG
LVTVEQKILPGHGRMKEVRTIAHRLKLEAFL
>YP0002 asnC, regulatory protein
MSEIYQIDNLDRSILKALMENARTPYAELAKNLAVSPGTIHVRVEKMRQA
GIITAACVHVNPKQLGYDVCCFIGIILKSAKDYPSALKKLESLEEVVEAY
YTTGHYSIFIKVMCKSIDALQQVLINKIQTIDEIQSTETLISLQNPIMRT
IVP
>YP0576 basR, two-component system response regulator
MKLLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIIL
DLGLPDQDGTLLLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLV
KPFALAELLARVRALIRRYQGQSDNLVQQDDLSLNLSTQQVCLQGQPLEI
TPKEFAILSRLIMRAGQTVNRELLQQDLYTWNDDLSSNTLEVHIHNLRRK
LGKDRIRTVRGIGYRLEALS
>YP0992 betI, TetR-family regulatory protein
MNLKESRPVPKVGMQPIRRQQLIEATMAAVNEVGMHEASIAQIAKRAGVS
NGIISHYFRDKNGLLEATMRYLIRHLGEAVKQHLAALSVNDPRARLRAIA
EGNFDDSQINSAAMKTWLAFWASSMHSPQLYRLQQVNNRRLYSNLCAEFK
RCLPREQAQLAAKGMAGLIDGLWLRSALSGEHFNRQEALLIIHNYIEQQL
NIKYKC
>YP3825 bolA2, BolA-like protein
MNLMDTNEIKDVLMNALALQEAHVTGDGSHFQVIVVGELFADMNRVKKQQ
AVYAPLMEYIADNRIHALSIKAYTPQEWQRDRKLNGF
>YP2483 celD, cel operon repressor
MVTKMDVRLVRERDFFNGKEFHLFIYNKTESATGLHQHDYYEYTLILTGM
CYQEINGKRVFLERGDFIFIPLGSHNQSFYEFGATRILNVGISKAFFEEH
YFHLLSRPIVASQAYRLRGDFLSYIESAISAPHYRENEQTELLELLTFYV
TNRISHYKESEVNDDIPSWLKATIDKMHDNAMFSEKALVNMVELSGKTQE
YLTRATRRYYQKTPMQIINEIRINFAKTQLEVTNYLVSDIAFEAGYSDTT
LFIKNFKKLTSFTPGNYRKNFYSARESLSH
>YP0408 citB1, putative two-component response regulator
MNTKLLIVDDHELIIHGIKNMLAAYPRYLIVGQADNGLEVYNLCRQTEPD
MVILDLGLPGMDGLDVIIQLLRRWPALKILTLTARNEEHYASRTFNSGAL
GYVLKKSPQQILMAAIQTVAIGKRYIDPALDASMVIKLTQGSDNTPPVLT
PRERQILKLITEGSCNRVIAAQLSISQKTVETHRLNMMKKLDVHKVAELI
HWSYRLGLNV
>YP1122 citB2, putative LuxR-family regulatory proteins
MGIAKMISCMIVDNDKYQTLGMVSIVKKIFTSLGFKKEIKFYRKAFYSAD
VIFIGVDEFSFFEALKRLDKTPAEADVFLICDARLNSFLQGIPRFSDVTM
IFREDSLETVSNKIATVFKRKFRGFKDNLIERKTAKVLHLVSSERQYLTP
NENIVLKLFNEGFSGGDIARILKKSEKTVSGQKRSAMKKLGARTDVELIK
MFMFK
>YP2582 citB3, putative luxR-family regulatory protein
MFSVAIKTRNAFYEFGLLSLLKKVLIKEDDMDYSIVPSHEKRDSNNANVI
FKDLMVIVNIYQENSFIQKNNSNNNKPMMTVNIPFNSSQLGLYDVISKIK
KILNIARLNYNMMMKSDLQRRIGLKNYIQLSMTESKVVQLTGKGHSTTDI
SKILDRSEKTILTHRRNAIRKLGMFNRLEFYKYASLMRNYSNKDAVFICL
>YP1760 cobB, putative Sir2 family protein
MRIRHRLCRFRKSKHVRHQRFRSRIFHRDSAVAKEMKKPFVVVLTGAGIS
AESGIRTFRADDGLWEDHRVEDVATPEGYRRDPELVQRFYNERRRQLQQP
DIAPNAAHFALADLEAVLGDNLVLITQNIDNLHERAGSKRVIHMHGELLK
VRCTQSGQVLDWQGDLSADERCHCCQFPSPLRPHIVWFGEMPMGMDDIYQ
ALAEADFFISIGTSGHVYPAAGFVHESHLHGAHTVELNLEPSQVESQFDE
KHYGLASKVVPEYIREFLTTCGENRQGD
>YP1848 copR, transcriptional activator
MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVL
DVMLPGMDGYSVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPK
PFSLIELVARIQALLRRRPSDGVDVSQLHINDLHLDLLARRVTRAGERLE
LTAKEFALLSLLARHQGEILSKMMIAEQVWDMNFDSDANVVEVAIKRLRA
KIDTPYPVKLLHTVRGMGYVLETRPDRQTK
>YP0074 cpxR1, two component system response regulatory protein
MRQRGEITMHKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLD
SSIDLLLLDIMMPRKNGIETLKELRQHHQTPVIMLTARGSELDRVLGLEL
GADDYLAKPFNDRELVARIRAILRRSNWSEQQQNAEQGAPTLEVDCLQLN
PGRQEASFEGQPLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTP
FDRAIDMHISNLRRKLPDRKDGLPWFKTLRGRGYLMVSET
>YP2623 cpxR2, putative two-component system response regulator
MKILLVDDDLELGTMLKEYLGGEGFTAKHVLTGKAGIDGALSGDYTALIL
DIMLPDMSGIDVLRQVRKKSRLPIIMLTAKGDNIDRVIGLEMGADDYMPK
PCYPRELVARLRAVLRRFEEQPTLSSIDSGIITQGGLTLNPSTRSSEWQG
KPFDLTASEFNLLELLLRSPERVVTKDELSDKGLGRPREAYDRSVDVHIS
NIRQKLAALPGNHLNIETVRSIGYRIR
>YP3592 creB, putative response regulator
MMKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPAL
AIVDVGLPDINGFDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADD
YIAKPFSPREVSARVRTILRRLQKSHLLAVTSTSYQFGHFSLDEAGARVT
YHQQILGLTRYEYLLLKTLLLAPERIFSRQQLMDIVWAQAEESQDRTVDT
HIKTLRSKLRTVYAEDSPIRTHRGLGYSLGYQP
>YP2269 csgD, putative LuxR-family regulatory protein
MLSDKDVNHMKILIIDECFYTRSGVNTYLNSVSSIKLMDVPTVEEATLAI
QEFQPDIIIVNLTQYCRYGGHCPLLAQFIHYCTRAKVYIYLDASYPFSET
PIPLTESVSMPIPLTESVSILAKKHLPNLLRRLPGFSLERLGIQPNQQAS
LFSPQEHKVMCYWMTEMPNYRIARKLNISGSTVYSHKRHITEKIKVRNRL
ELCFIYNVFKYLY
>YP2460 cspB, cold shock protein
MAQNNEGNIFMSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQGN
DYKTLDEGQNVEFSIEQGQKGPSAVNVVAL
>YP1121 cspC1, putative cold-shock protein
MMNGRITTFFEDKGFGFITDENGDNRYFHVIKVANPEMIKKGAEVTFEPT
TNTKGLSAFAVKVAIESKYIFIANERIKLTSIKSFNTFTKEVPAQAEVDK
ANTILSVNLLMNKIRPQEEDISEKTIPLKMLSITTFQNVTYTFSEHEVDI
DSTVAKLKSI
>YP1486 cspC2, cold shock protein
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNV
EFEIQDGQKGPSAVNVTAI
>YP1786 cspC3, cold shock protein
MSNMMKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQDQGFKTLAEGQN
VQFSIENGAKGPSAANVTAI
>YP1228 cspD, cold shock-like protein
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQIVNF
DVHEGPKGNHASLIVPLELNSVPPLDGVSPPELAILA
>YP1120 cspE1, putative cold shock protein
MTQFLCPTFTLKVSLMSKIKGSVKWFNESKGFGFITPEDGSKDVFVHFSA
IASNGFKTLAEGQRVEFEITNGAKGPSAANVIAI
>YP1195 cspE2, cold shock protein
MPSKRKFIMTLKMGRVKWFNQSEGYGFISPHDGGSDVYVNKTAIANTKNK
SLNEGQDVEFSTYRSIHGPSAADVIAF
>YP3904 cspI, cold shock-like protein
MPHKFYPSLSSRLWRQLKIIEGSISMSNKMTGLVKWFDAGKGFGFITPAD
GSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPAAVNVIAL
>YP3903 cspa1, major cold shock protein Cspa1
MSNKMTGLVKWFDAGKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQN
VEFSIENGAKGPSAVNVIAL
>YP0839 cueR, putative regulatory protein
MNISDVAKKTGLTSKAIRFYEEKKLVTPPVRTDNGYRSYTAKHIEELTLL
RQARQVGFTLDECRELLALFHNPARHSADVKAATLLKVAEIEQHINDLNQ
MRMRLLALAEECPGDEGADCPIINSLAGCCHSSSSLPLK
>YP2017 cysB, cys regulon transcriptional activator
MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFA
RSGKHLTQVTPAGLEIIRIAREVLSKVDAIKAVAGEHTYPDKGSLYVATT
HTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATE
ALHLYDDLIMLPCYHWNRAVVVKPDHPLAGKTHVSIEELAAYPIVTYTFG
FTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP
VQDPDLVTVDARDIFTYSTTKIGFRRSTFLRSYMYDFILRFAPHLTRDVV
DKAVALRSNEDIEAMFNDIKLPVK
>YP0110 cytR1, transcriptional repressor
MENKKEFTMTTMKDVAEMAGVSTATVSRALMNPEKVSTVTRQKVEQAVLA
VGYSPHALSRNIKRNESRTILVIVPDISDPFFADVIQGIEHAAAQQGYLI
LIGDCAQQTQQERTFVNLIITKQIDGMLLLGSNLPFDASKEEQRNLPPMV
MANEFAPELELPTVHIDNLTAAYEAVNYLHELGHKRIACIAGPESLPLSH
YRLQGYIQALRRNGITVDNDYIIRGDFSYEAGAQSFAALMELPHPPTAIF
SHNDVMAVGAIWQAKQLGLRIPQDVSLVGFDDLKLSQFCDPPLTTVAQPR
YQIGQQAMLLLLEQLQGHSVQSGSRLLDTELIIRESTAAPKH
>YP3443 cytR2, putative transcription repressor
MNKKTKVTMSHIAAKAGVSQSTVSLVLNGSYSIKLADDTREKVLRIAQEM
GYVHKAVERPIARDKIALIINGLINHDPFIEAISAVQQAAWQHNKLLAIF
DQENEPEHCAALEEEICRGGYQGVIYASCMTSQLAPMFRNLSIPMVMLNG
YCPELPDVPCILPADKIGAYKATSHLLQQGYKRIAILAGELWMDAANDRI
SGYRQALINHDICPDEGYIQVTNWSLKEAYKKTLELLALTARPEAIFCSS
DYIALGCYQAILSQGLRIPDDIAVVGYDNQSISSELSPELSSVNLPYGEM
GEMALHTLLNITQQQPLLSLKMKVEGELVIRQSSIRPEK
>YP1617 dbpA, ATP-dependent RNA helicase
MSTTSFSSLTLPAEQLSNLNELGYTEMTPVQAAVLPAILNGQDVRAKAKT
GSGKTAAFGIGLLDKIAVGEFVTQALVLCPTRELADQVSKELRRLARFTQ
NIKILTLCGGQPMGHQLDSLVHAPHIVVGTPGRIQEHLRKKTLVLDELKT
LVLDEADRMLDMGFSDAIDDVIAYTPPQRQTLLFSATYPSGIEQISARVQ
RQPLNVEVGDTDEEPAIEQVFFETTREKRLPLLISVLSHYQPASCVVFCN
TKKDCQSVYESLESRGISVLALHGDLEQRDRDQVLVRFANRSCRVLVATD
VAARGLDIKDLELVINFELAFDPEIHIHRIGRTGRAGMSGLAVSLCTPQE
MVRAHTIEDYLQIKLKWTPAEQVSRSTNIMLEPEMVTLCIDGGRKAKIRP
GDILGALTGDAGLTAADVGKIDMFPVHAYVAIRKASAKRALQQLQQGKIK
GKNCKARLLK
>YP0595 deaD, inducible ATP-independent RNA helicase
MRHVYMTTELETSFADLGLSAPILSALTDLGYEKPSPIQLECIPHLLNGR
DVLGMAQTGSGKTAAFGLPLLHNIKADLKSPQVLVLAPTRELAVQVAEAL
SSFSKHINGVNVVALYGGQRYDVQLRALRQGPQVVVGTPGRLLDHLKRGT
LNLSNLSGLVLDEADEMLRMGFIEDVETIMAQIPAEHQTALFSATMPEAI
RRITRRFMKEPQEVRIQSSVTTRPDISQSYWRVGGGYRKNEALVRFLEAE
DFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKD
GRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLQNIERTMKLTIPEVELPNADLLSERRLAKFAAKVSQ
QLESSDLDMYRALLAKLQPEEEFDIETLAAALLKMAQGERPLILPPEAPR
RPQREFNSRDDRGNDRGSRDRGDSRRDNRSDSRSADSRDGGERPARRERR
DVGEMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTI
ELPKGMPGEMLSHFTRTRILNKPLNMQLLGDAQPHERRERPAGGNGGERR
GGGRPFSGERREGAGAPPRRSFSGDRAPTGGGERRGNRDGQRSAAPRRDD
AAAPAAAAAAPARRRFGDA
>YP0376 deoR1, putative transcriptional regulatory protein
MSRQDEQRLLVKIATLYYTEGMKQSEIADSLHLSQSFVSRAITRCVKEGV
VKISVIQPANMFIGIESRIQKHYGIDQAIVVDITDDASPAQIKQAIGSAA
AHYMQTSIRPNDMVGISSWSSTIRAMVDNLHPLNIKTSGVIQLLGGVGPN
GNVQATLLTQSLANILNCPAYLLPAQSIERSTEDRARLISSGEVADVVNK
FAEVDLALVGIGVLEPSQLLKNSGNYYHEEMLKLLAERGAVGDLCLHYFD
AAGNAVLSDEEDPVIGMSLPQLRACPRVVALAGGIEKSAAIRGALTGNYI
DVLITDRLTAETLL
>YP2111 deoR2, putative transcriptional regulatory protein
MHKSDKKLDQAARAAWMYYVAGQTQHEIAEALGVSRQVAQRLVACAIDNG
LVSVNITHPVARCMALAEQLQQRYGLHRCQVVPSQGMDNAGVQRAIAVAG
AEVMAQFLRQEQPLVIGVGSGRSLKAAIDELPDVERPQHSCVSLIGAIAA
DGSCTRYDVPLWMAEKTQGRYFILPAPLFADSAADRDLWCNHRIYRTVTE
KAAQADVTFIGIGSIGYHCPLHKDGFISAQDVDALLASHVVAEMLGNFID
ADGQPVPYALDQCLTSVKLRIQPEKPVIAIAGGKEKHQAIKAALKGQWLN
GLVTDEESAMVLLAEEKA
>YP1270 deoR3, deoxyribose operon repressor
MTIRRDLSAEPTSVILLGGYVVMDPKSNNANNYFVSDQQAKQVEEKRRIG
QLAAQLIIENDTVFFDCGTTIPWIIDEIDEELAFTAICYSLNTFLALQDK
PNCKVILCGGEFKPNNCIFTPLSQQSELDNICPNKAFISAAGVSIEYGAT
CFNFDEILLKHRAMAKSQYKILVADHSKFGKIKPASIGTLAQFDALVTDR
PPVAEFYLFFSQHSVKIYC
>YP3767 deoR4, putative regulatory protein
MSEEELLARVAWFYYHDGLTQGDIGELLGLARLKVSRLLEKGRQSGVIRV
QINSRYEGCLELENTLQQHFGLKHIRILPSLASLSISSRLGIGAAHLLMA
LIQPQQLLAVGFGETTMCALQHLSGFIASQQVRLVTLSGGVGSYMTGIGQ
LDAACQVSIIPAPLRASNAHVADTFRQENSVRDVMLAACAADIAVVGIGS
VNQQKEATILRSGYISEGEQLMFSRKGAVGDILGYFIQADGALVPDMQIH
QELIGISLADLTTIPTVIGVAGGVEKADVIVAALRGRYVNALVTDEVTAR
AIINLL
>YP0339 deoR5, transcriptional regulatory protein
MIPQDNELLTEIAVSYYQDEMTQEEIAHKFGISRIKVGRLLKRAKTEGIV
EINVRYHPVFSTRLEQQLIEHFGLKRALIALDYQDEDEQRRQVAALVSAY
LATNLKDNTVLAVGQGRNVAAIADHVSVVPERHCKFICGIGGTHRPGDAI
NADHISRRLAKKFGGTSETLYAPAYVENRALKEAFMQNGTIKETLDRARK
ADMALVGIGDMNENSYMVELGWFTPQEIVDASLHQGVTGEIAGYDFFDAQ
GQPANTVMNDRVIGISTQELRQIPCVIAIAAENTKALALLGALRTGAIDI
LATSASNARTILKMIQHQS
>YP1583 deoR6, putative transcriptional regulatory protein
MEKNHANNMKNRVTESSKGTALHLNPMVSAAWLYYEDQLKQSDIAEILGV
SRATVINYLNEARLRGIVEIKISDEHLASMRLAQAIMREFGLERCIVIPD
DQGQRPTALRVGEAGAQLLSSLIAPNDVLGVSWGQTVLALSHAITRHPVA
DLTVIQITGSMHSTYEFSPELCTSNIADRYRARCINLHAPFLLSRPEIKE
MLCNEPALMPQLALLNTCTKIVFGVGNTAADSTIFSSNTVTYAAVEPYRQ
QGAVAIIAGRYIDATGAPIYDHLDDRMIGLTIDEIDQIPVRICVAGGLNK
VEAIRATLKGQHATVLVTDEVTACALMTRAKTP
>YP0932 dinG1, putative ATP-dependent helicase DinG
MALSSAVKEQISQWYKALQQQIPDFISRAPQRQMIAEVAKTLSGDAGRHL
AIEAPTGVGKTLSYLIPGIAVSRAENKPLVVSTANVALQDQIYSKDLPLL
KKIIPDLKFTGAFGRGRYVCPRNLAAMCTDVSGQGDLSLFLGDELAPANG
EEQATCLALSKSLNSYVWDGLRDHHQLALSDSLWAKLSTDKANCLGRNCH
YFRECPFFIARKEIESADVVVANHALVMAALETESVLPNPKELLLVLDEG
HHLPDVARDALEIEGEITAVFANMQLDMIVRLVDQCLVQYRPKNPPGLAH
PERLKDHCEQLRELMLSVEQQVSQLLPTEGNPAVYRFEMGDLPENLTESC
AKLFKLTDALRGVAEFVLNDLSEQTGKHDIVRLHRAMIQMSRTLGYLEAM
SKLWRLAAMEKASNAPISKWVTREYRDNQTHIYFHCVGIRVSDQLDKMLW
RKVPHVIVTSATLRSLNSFARLQEMSGLSEKAGDRFETLSSPFNHIEQGK
LIIPKMRFEPTMANEAEHLAEMAQFFRAQHASGRHKGMLILFSSHRAMQT
FLSHVTDLRLMLLVQGDQPRYRLVEEHRKRVNNGTASVLIGLQSFAEGLD
LKGELLTQVHIHKIAFPPIDSPVILTEGEWLKSLKRYPFEVQSLPSASFN
LIQQVGRLIRSNECRGEIVIYDRRLLTKGYGARLLAALPVFPIEQPDMPE
GPLVTPTAVKGPAKRTKRVRKTRDKP
>YP1914 dinG2, putative DEAD box family helicase
MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTG
KTFAYLAPALRADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALL
KGRSNYLCLERLEQQSLAGGDLASETLVDLVRLRGWSAETVDGDISTCGQ
VAEDSFVWPLVTSTNDNCLGSDCPLYKDCFVVKARRRAMDADVVVVNHHL
FLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQQLTSRQLMDL
AKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVME
QPTVQRALLLLDDALELCYDVMKLSLGRSAMLDAALERATVYRNRLKPSS
FWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLRGGDPFNDVQL
PDAVITLKQGVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRT
RDLAKAIAFLKQRD
>YP0666 emrR, MarR-family transcriptional regulatory protein
MKLMRRLIMESSFSPIEQMLNSRAKRQKDFPYQEILLTRLSMHMHSKLLE
NRNKMLKAQGINETLFMALITLDAQESRSIQPSELSAALGSSRTNATRIA
DELEKKGWIERRESHNDRRCLHLHLTEAGIEFLHQLLPPQHKCLHFLWST
LTEQEQQQLEMLTRKLLTRLDQMEISEQ
>YP2896 exuR, exu regulon transcriptional regulator
MCLLRDAIPSRQNEPQNLPPRLIARALIMEFTETRRLYQQLAAELKRRIE
AGVYPVGDKLPAERYISEEMNVSRTVVREAIIMLEVEGYVEVRKGSGIHV
MSNQQKHLVTNQGIEFDTAGPFELLQARQLIESNIAEFAATQVTRQDIVQ
LIEIQKHARQEDRFRDSQWDLKFHVQVALATQNTAMATIVEKMWSQRTHN
PYWIKLHEHIDDVSIESWCEDHDKILEALIRKDPHASKLAMWQHLENTKQ
MLFRATTDDFEFNVDRYLFTENPVVHLDNLMNNSKVPISSKN
>YP0011 fadR1, putative GntR-famly transcriptional regulator
MQLNTQQQAAQRNLSYLLAEKIGQRILAGEYEAGSILPGEIELGEQFGVS
RTAVREAVKMLAAKGMLLPRPRIGTRVMPQTNWNYLDQELLTWWMTKENF
DQVMQHFLILRTSLEPQACYLAATHANEKQRELLASLVAEMRALHSNFNR
EQWIQVDTQFHKLIYEASGNPFLISFANLFSSVYYSYFRAITGDEVIKLQ
HHQNIVDTILAGDNQGALFACQVLLKTVD
>YP1946 fadR2, fatty acid metabolism regulatory protein
MVIKAQSPAGFAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLRE
VLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHDSVPQLIDN
LLAVRTNIATIFVRTAIRHHPEKAQEILARAKTVDDNAEAFTALDYGIFR
GLAFASGNPIYGLILNGLKGLYTRVGRYYFSNPEARKLALTFYNKLSTLC
DTESYDQVLECLRTYGKESGAIWHSMQGTMPSDLAEARR
>YP3893 fiS, DNA-binding protein Fis
MFEQRVNSDVLTVATVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVSDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>YP1667 fimZ, putative two-component response regulator
MTKSVMIVDDHPAIRVAIHALLSQSKEFSTISESVDGSEALEKLKNNPVD
LVIIDIELPNFDGFSLLKKLQQRGFTGKSLFLSAKNEQVFAVRALQAGAN
GFISKNKDISEILFAAQNVLRGYSFFPSETLTQLAGQPSSHDPVNRARLL
SEREINVLRYLVNGLSNKQIADEMFISNKTVSTYKTRILTKLGLSSVIEL
ADYAHTHNLV
>YP1596 flgM, negative regulator of flagellin synthesis
MSSIDRTQPLSPVTQVQARESHDVAQQTRQSATQTKTPVSGTEVKLSDAQ
AKLMQPGSQDINVERVETLKQAIRSGQLTMDTGKIADALLKNVADELKNH
>YP1550 fliA1, RNA polymerase sigma factor for flagellar operon
MSDLYTAEGVMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGI
DLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREV
ASAMQQVEQRVGRPATEQEVAQVLDIGLVEYRQILLDTNNSQLFSYDEWR
EEHGESVEPLLEGHEDANPLKHLLEGNLRQRVIDAIEALPEREKMVLTLY
YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARLNNDA
>YP3054 fliA2, putative RNA polymerase sigma factor for flagellar operon
MENREFEACLTLTAEEEGKYLNAYLPLVKRIVRQLSFQADSVIGKEDMQQ
IALMGLLEALRRYGHPDGQFAAYAVHRIRGSILDQLREHDWRPRRLRQKT
HKTNEAIRQIAKRLGHEPNFEEISAELNLTADEYQEYLLLENAGAMESLD
EILALEAHNDILQSRDLEENIIIEDNLKQAISTLDEREQMILHLYYQQEL
SMKEIAQVLDLTEARICQLNKKLVQKIKSFF
>YP3640 fruR, putative fructose repressor
MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVDKVMAVVREHNYHPN
AVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE
DQPDNEMRCVEHLLQRQVDAIIVSTALPPEHPFYQRWAKDPFPIIALDRA
LDREHFISVVGADQEDAQMLAQELRSFPAESVLYLGALPELSVSFLREMG
FREAWKDDPRKVEYLYANSYEREAAGVLFAEWLKTHPMPQALFTTSFQLL
QGVMDVTLKQSGRLPCNLAIATFGDNELLDFLECPVLAVAQRHRDVAERV
LELVLASLDEPHKPKPGLTRIRRNLFRRGTLSLSRR
>YP2067 galR1, putative LacI-family transcriptional regulatory protein
MATMKDVALRAGVSVATVSRVLNNTAYVEPGTRERVEKAMREYNYQRNAA
ALALAKRSGNMLGLLTGNLADPFFSRLARGVEEVARKKGAKLMVCSGGHQ
EELEKAGLDFLINQGCEAIVAHITRMSEAEILRYAAHTPGLVLINRYLPA
IANRCVWLDNTRAAEASTHYLLQNGHTRIACVTAKLSIDDKKQRLEGYRA
AMASAGITVPADWIISVPFDEEGGELAAEKLLASDQNFTAVVTFNDVMAA
GMMRSLHQRNISLPEQLSIVGFDDVVLARYLYPSLTTVHYPIERMARRAA
NIALLLHAQGEVSPQINMFSADLVIRDSVAQVGKNRGK
>YP2862 galR2, galactose operon repressor
MGDGAIANKRGKPFCSSPFLWFFLLSCDHPPLRVILFSAKLSDVSGYPRI
SGTKMATIKDVAKLAGVSVATVSRVINHSPKASEASRVAVCKAMEQLQYH
PNANARALAQQSTETVGMIVSDVSDPFFGAMVKAVEQVAYATGNFLLIGN
GYHDAEKERQAIEQLIRHRCAALVVHAKKLPDDELTSLMEQIPGMVLINR
TLPGFEPRCIALDDRYGAWLATRHLIQQGHKRVAFICSNHQISDALDRMQ
GYLDALKEFDIPVDERLITYGTPDELGGEQAMTDLLGRGKHFTAVSCYND
SMAAGALSVLSDNSIDVPQEISLIGFDDVLISRYLRPRLTTIRYPVVAMS
TQAAELALALANNTPLPEITNMFSPTLVRRHSVASPPSLRDDTD
>YP2822 gcvA, glycine cleavage system transcriptional activator
MSKRLPPLNALRAFDAAARHLSFTKAAEELFVTQAAVSHQIKSLEDFLGL
KLFRRRNRSLLLTEEGQSYYLDIKEIFTSINEATRKLQARSAKGALTVSL
PPSFAIQWLVPRLSGFNAAYPGIDVRIQAVDREEDKLADDVDVAIFYGRG
NWSGLRTERLYAEFLLPVCAPSLLTGENGLKVPSDLANHTLLHDTSRRDW
LAYTRQLGVPQINVQQGPIFSHSAMVVQAAVHGQGIALVNNVMAQSEIEA
GRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILARAASEQEKLR
FRYEN
>YP0122 glpR1, glycerol-3-phosphate repressor protein
MKQTQRHDAIIELVRLQGYVSTEELVEHFAVSPQTIRRDLNELADQNKIH
RHHGGAALPSSSVNAAYNDRKVMWSEEKARIAQRVASQIPDGATLFIDIG
TTPEAVAHALMNHKGLRVVTNNLNVATLLTAKEDFRLILAGGEVRTRDGG
IIGEATLDFISQFRLDYGILGISGIDMDGSLLEFDYHEVRTKRAIIENSR
CVMLVTDHSKFGRNAMVNLGNMNLIDYLFTDQQPPASVMKIIEQHEVQLE
LC
>YP0359 glpR2, putative deoR-family regulatory protein
MLQAERHKIICTHVQQQGSALVTELSVLCQVSQETIRRDLTVLQKKQKLI
RSFGGAVALDSPEIPVIDIKEIHDGLNVIDRAESFRKRTEEHPDTKMKIA
KAALQFIRPGDCILLDNSSSCWFLARQIPDIEITVVTNSVKIIQALACRD
KVRIIGIGGEYSARHDDFHGPVAENAIRNFQINTFFFSCQGINQDSGVRD
GNDINAKLKQVMLQVSGQKILLADSSKFDQYAFCKICTLDEVDILITNRL
SSQNYRSDNPKLNIIESDK
>YP0904 glpR3, putative transcriptional regulatory protein
MMMIPEQRRDFIYRYVHEQNVASFMDLAELMNVSHMTVRRDIQILEAEGK
VVAINGGVKLNNLLKLELAYSEKASLNHELKQNIGVLAAMLIEPGQTLYL
DAGTTLFEVAKAVAASNCFNLTVVTNDFTISGYLMDMPHISLYHTGGLVD
RRNRSCLGNSAANFLNTINIDVAFLSSSSWDIARGMSTPSEGKAMVKAAV
MRASRRNILVSDSSKFGKYGMFPICNLQALTDIISDGNLPLVAQKQIKES
GVKLHLVNKEVRAPCSNSQPI
>YP1680 glpR4, probable deoR-family transcriptional regulatory protein
MIPIERHQKILALVAERGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVL
SVSGGVRSTQRLAIEPSHQDKTMMFSRQKQAIGTSAALHIPRNSCIYLDA
GTTTLALARQLEDRDDLLVVTNDFVIANFLIESSQCRMIHSGGTLCRKNR
SCIGEAAAHSLRNLSIDIAFISASCWGLRGISTPDEDKVPVKRAISEASS
KRVLLADASKYGKVATYLALPLTAFDVVITDNSLSSTVYEELAEKALELI
IASPPR
>YP3896 gntR, putative GntR-family transcriptional regulatory protein
MFCITEAWYKKQPYCRTGIQLMLAGMGVIKPETLRYQVENVLRQAIMSGR
FTPGERLIERELCETLGVSRTSIREALRRLEAEKLVSIVPHKGPIVAIIS
RQEAAELFALRGLLEGFAAREFAQRATDVAIVHFAQAIQALRMAGMTKDR
AKVLKAKTDLYDVLLDNCGNGLVKETLTSLHSRINLLRATSLMDPQRLPV
SINEIDDLYQALKARDPDAAERHVANAKEVALRILEETNAT
>YP3317 gntR1, gluconate utilization system Gnt-I transcriptional repressor
MKKKRPVLQDVADMVGVTKMTVSRYLRNPEQVSAVLQEKIALALDELGYI
PNRAPDILSNATSHAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAH
YGYQKEREEQRLTSLLSYNIDGLILSERHHTARTLKMIEVAGIPVIELMD
CISPCLDLAVGFNNFEAARQMTQQIIAKGHRYVVYFGARQDERTVIKQQG
YEQAMRESGLVPMSVMTSRSSSYSAGAELLREAQVSYPQIDSIFCTNDDL
AIGAVFECQRQGLSIPHDMAIAGFHGHDIGQSMVPKLASVLTPRERMGQI
GAERLLARLRGEGVTPQMVDVGFTILPGGSI
>YP0578 greA, transcription elongation factor
MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHA
AREQQGFCEGRIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTE
EEQNYRIVGDDEADFKQNLISVNSPIARGLIGKEVDDVVVIHTPGGEVEY
EILSVEYV
>YP0136 greB, transcription elongation factor
MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYI
YGKKRLREIDRRVRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVENEQEE
QRIFRLVGPDEFDPAKKWISIDSPVARALIGKQVDDEVTVQTPNGEATYW
ILEIRYRPFDEDRPFNEDIDN
>YP3662 hepA, RNA polymerase associated helicase
MPFTLGQRWISDTESELGLGTVVAIDVRMITLLFPATGENRLYARNDSPI
TRVMFNPSDTITHHEGWQLKVEEVTQENGLITYIGTRLDTEETGVAMREV
LLDSKLTFSKPQDRLFAGQIDRMDRFALRFRARKYQSEQFRLPWSGLRGI
RASLIPHQLHIAYEVGQRHAPRVLLADEVGLGKTIEAGMIIHQQLLAGRA
ERVLIVVPESLQHQWLVEMLRRFNLRFSLFDDSRYSEALLDSSNPFDTEQ
MVICSLDFVRRNKQRLEQLADASWDLLVVDEAHHMAWSEEAPSREYQVIE
QLAEHIPGVLLLTATPEQLGQQSHFARLRLLDPDRFHDYEEFVNEQQKYR
PIADAVTLLLGGERLTDDKLNLLGELIDEQDIEPLLKAANSQSEDSEAAR
QELVTMLMDRHGTSRVLFRNTRNGVKGFPHRVLHQIKLPLPTQYQTAIKV
SGIMGAKKTLDARAKDMLYPEQIYQEFEGENATWWNFDPRVEWLLNYLVA
NRGEKVLVICAQAATALQLEQVLREREAIRAAVFHEGLSLIERDRAAAYF
ASEEDGAQVLLCSEIGSEGRNFQFACQLVMFDLPFNPDLLEQRIGRLDRI
GQNREIQIMVPYLEDTAQAILVRWYHEGLDAFEHTCPTGRTIYDSSYQEL
ISYLATPSEQEGLDEFIHTCRQQHEGLKLQLEQGRDRLLEMHSNGGEHGQ
ELAQSIAEQDNDINLVSFALNLFDIVGINQEDRSDNLIVLTPSDHMLVPD
FPGLPPDGCTVTFDREQALSREDAQFVSWEHPIIRNGLDLILSGDTGSCA
VSLLKNKALPVGTLLAELVYVVEAQAPKHLQLTRFLPPTPVRMLMDRNGT
NLAAQVEFESFNRQLNAVNRHTSSKLVNAVQQEVHTMLQQAEALVEAQAQ
ALIETAKREADDKLSTELARLEALKAVNPNIRDDEIEALEHNRKMVLENL
NQAGWRLDAIRLVVVTHQ
>YP0598 hipB1, putative transcriptional regulatory protein
MKSDLTLHAWDEVRAELLQDEETARAYAIVMLRKALLNSLVAVRKSKQLT
QVDIAKRIGVSRQAISKFEKGESAPTLDTLIGYTAAMDIDFAANMKKIFT
QTF
>YP2107 hipB2, putative DNA-binding phage-related protein
MKKTDDFDIIPFAVVKAAALSHPQVNDAYTDLQIRQAMMTELKAARQQCN
LTQEEVALRAGLKKQNISRMEKGIISPNLTTLSRYAAALGGTFVFQFNPN
SSYATKE
>YP3391 hipB3, putative regulator
MAKLQYIHDEAGKPQFVVLPIAEYQQLISNAKYEDIPYVADHDDDQTIPN
EVVQIMINDGVSLLAAWRIYRGFSQYEIAELLGTTQSAVSQWEAVDSRPQ
KKTREKLAAIYKCRAAQMIL
>YP3579 hipB4, Predicted transcriptional regulators
MMKCPVCGGVELIHEARDVPFTYKGRKFIVEGVIGQHCPACGETVMTEAE
SDVYAAKTMLLRKMVNTESIAPAYIVQIRKKLGLNQREASEIFGGGVNAF
SRYEKGKALPHPSTIKLLQVLDKHPELLNEIR
>YP3581 hipB5, putative DNA binding protein
MAKLQYIHDEAGKPQFVVLPVAEYQQLISNAKYEDIPYVADNDDDQTIPN
EVVQIMVNDGVSLLAAWRIYRGFSQYEIAELLGTTQSAVSQWEAVDSRPQ
KKTREKLAAIYKCRAAQMIL
>YP3937 hipB6, putative transcriptional regulatory protein
MHRITISNSIAIRCVFVFKSGLILEHLMTDVIDEIMQTEEQRRAFGLRLK
ELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSI
DYLLLGSSNETSSIRNTRLLERFKALSQCQPEEQETVIKLIDAVIVKHRV
ESALQPVDPEKK
>YP1632 hpcR, homoprotocatechuate degradative operon repressor
MLLMHESLTIALLQAREAAMAFFRPILKANHLTEQQWRIIRVLADNRSID
FHGLARQTCILRPSLTGILTRMERNNLIFRLKPVNDQRKLYVSLTQEGQN
LYDNARPQVEEGYRLIEAAFSPDKMAQLSLLLDEFITVGNKHRQANEMSE
NEMLEDEE
>YP3613 iciA, replication initiation inhibitor
MWHSVVSIYYFGEMTPMKRPDYRTLQALDAVIRERGFERAAQKLCITQSA
VSQRIKQLENLFGQPLLVRTVPPRPTEQGQKLLALLHQVELLEEEWLGND
NGVDTPLLLSLAVNADSLATWLLPALKPVLADLPIRLNLQVEDETRTQER
LRRGEVVGAVSIQPQPLPSCLVDQLGALDYLFVASKAFAERYFPNGVTRS
ALLKAPAVAFDHLDDMHQAFLQQNFDLSPGSVPCHIVNSSEAFVQLARQG
TTCCMIPHLQIEKELASGELIDLTPGLLQRRMLFWHRFAPESRTMRKVTD
ALLSYGRQVLRQDSFIGQ
>YP3085 iclR, Transcriptional regulator
MALPIPIKRGKKPKAATQNTPAATGQVQSLTRGLKLLEYISESDGNVALT
DLAQQAGLPNSTTHRLLTTMQQQGFVRQVGDLGLWTMGAHAFIVGSSFLQ
SRNLLAMVHPMLRRLMDESGETVNLAVLDHSDYQAIIIDQVQCTALMRMS
APIGGKLPMHASGAGKAFLSTLPDDQLVQLLHKKGLHAYTQHTRTNPTSL
KENLALIRKQGYSFDDEEHALGLRCIAACLFDEHHEAFAAISISGPISRI
TDDRVTELGALVIHAAKEITQSYGGGTGVK
>YP3157 ilvY, LysR-family transcriptional regulatory protein
MMDLRDLKVFLHLAESRHFGRSAKAMHVSPSTLSRQIQRLEETIGQPLFL
RDNRTVQLTDAGNQLKAFAQQTLLQYQQLLHALGQHGPSLSGELRLFCSV
TAAYSHLPPILDRFRARHPLVEIKLTTGDAADAVNKVQSNEADLGIAGRP
EVLPTSVAFTQIGEIPLVLIAPALPCAVRSQVAVEKPDWAMIPFILPEHG
PSRKRIDLWFRRQRITNPLIYATVSGHEAIVSMVALGCGVALIPSVVVDN
SPEPVRNRISLLDDVSLVEPFELGVCVPKKRLQEPLIDAFWGLL
>YP1739 kdgR, IclR-family transcriptional regulatory protein
MAIADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMPKSTVYR
FLQTMKSLGYVAQEGESEKYSLTLKLFELGAKALQNVDLIRSADIQMREL
SNETRETIHLGALDEDSIVYIHKIDSMYNLRMHSRIGRRNPLHSTAIGKV
LLAWRDRGEVEEILSHIEFTRSTKYTLDSTAALLPVLDKVREQGFGEDIE
EQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFAEDRKSDYVKSLHCAAR
NISEQMGYRDYPF
>YP2491 kdpE, two-component regulatory protein response regulator KdpE
MRIALESEGWRVFESETLQRGLIEAGTRKPDLIILDLGLPDGDGLNYIQD
LRQWSAIPIIVLSARNNEEDKVAALDAGADDYLSKPFGISELLARVRVAL
RRHSGASQESPLVNFADISVDLINRQVTRAGENLHLTPIEFRLLTALLAN
AGKVITQRQLLNQVWGPNYVEHSHYLRIYMGHLRQKLEADPTRPKHLLTE
TGVGYRFIP
>YP3546 lacI, lactose operon repressor
MDSGDWVFHLCPCYNQGITLRGSQTMKSKSTTLEDVARHAGVSYQTVSRV
LNKSAKVSEATRRKVEQSIELLRYVPNRLAQQLVGKQSMTMGLVTTSLAL
HAPSQVAAAIKRYAHIEGYQVLISMIDESVNQSIQHSINDLKSQWVGKVI
INVPLETAVAEKIAADNDDVTCLFLDVDPYSSVFNVSFNPADGTRASVKY
LYELGHREIALLAGPKQSVSANLRLKSWLETLADYGLSPVSVIHGNWDAQ
SGYSGALQMLRETPQFSAVLVANDQMALGVLSAFHQNQLAVPGEKSVIGY
DDTYESSFFYPALTTVSLDLDLQGKEAVRRMLSASDNESMRSSSILPAKL
VVRNSTGPQAKEHRDLQKIAEELRLIAQRLAS
>YP3643 leuO, LysR-family transcriptional regulator LeuO
MELSMSEYNLVTDSQATKKESIDVHLRSVDLNLLTVFDAVMQMQNVTRAA
QSLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARARQLFGPVRQAL
QLVQNELPGAGFEAKNSERLFNLSICSPLDVRLAAQIVQRVKQSAPNVQL
VIKSYLNDNIEHQLRYQETEFVIGYTEFDRPDFHRIPLFKDELVLAVSKD
HPRINDSITENQLLSESHAVVSLDKKGSFSEPYYDSTTSTQSIAYESTDM
NSVLNIVSQTYFVAIAPRWLVKTYSEALNLKLISLPWENTSRACYLTWHE
STDRDKGHQWMKALLGQFSSPV
>YP0470 lexA1, LexA repressor
MKALTTRQQEVYDLVRDHLAQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL
ARKGVIEIVSGASRGIRLLMEEEEGLPLIGRVAAGEPLLAQQHIEGHYKV
DPSLFKPGADFLLRVNGMSMRDIGILDGDLLAVHKTQDVRNGQVVVARID
DEVTVKRLKKQGNIVHLLPENSEFQPIVVDLREQSFTIEGLAVGVIRNGD
WI
>YP0908 lexA2, putative prophage repressor protein
MKKKPLTPEQLDDAKRLKELFNAKKKALGISQESVAHELGVGQSAVNQFL
NGVNPLNITNAAAFAKVLNEPISSFSPSLAKELAKMAESLSITTRSGAKD
KPAVSVANSYPLISWISAGNWYEAIEPYTLRDIEIWPESTKHAHESAFWL
SVKGDSMTSPSGISFPEGMIILVDPEKEPMPGNFVIAKLTDDNEATFKKL
VVDAGIKYLKPLNPAYRLIELNGNCKILGVVVDARWLQID
>YP0785 lrp1, probable AsnC-family regulatory protein
MLDKTDRKLLRMLQEDCTQSLHVLADAVNLTSTPCWKRLKRLEDEGFIRG
RVALLDSEKLGLGLTAFVLIKTQQHNSDWYQEFVAFTKQMPEVLAFYRMA
GEYDYLMQVEVADMKSYDRFYKRMVNGVPGLIDVTSSFAMEKIKYTTVLP
VPE
>YP1218 lrp2, leucine-responsive regulatory protein
MIDNKKRPGKELDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVR
RLERQGFIHGYTALLNPQYLDASLLVIVEITLNRGAPDVFEQFNAAVKNL
EEIQECHLVSGDFDYLLKTRVPDMSAYRTLLGETLLRLPGVNDTRTYVVM
EEVKQSNRLVIKTR
>YP1781 lrp3, AsnC-family transcriptional regulatory protein
MDKIDEQLIAILVENARTSLKDLSQKVNLSSPSTSERLRRLEEQNIILNY
TLGLDQKAFGYNLQAIVRVKPVANMLDAVEKMIKDTPECIECDKITGDDC
FLSRLSIRSMGQLDTIVDRWSEQAETYTSIVKTTPITRRFPPLVRPIKI
>YP0088 lysR1, possible transcriptional regulator
MPKRQVLFKLKKLNKITRRNMQKKNDRNSIKIMQIRAFCMTAEQGAASLA
ALNLFRTQSAITRSIRDLEHTLAISLFERHAKGMLLTDLGNVILPRARSA
MEELTRIPALLRRLQQRDDEGIEDLEPTWLFNERRLQIFLSLYRQQHALH
VAQALDITQSAVSAALKVLEKGAGMYLFHRTPKGMLPTPAGHEIAPCISR
ALNALHHIPEEITAHRGDLTGSVRVGALPLSRARLLPQAMIKLISRHPGI
KIVTNESGFTALIAELRAGDIDFIIGALRNEKMLLDIHSEILFEEELILL
ARPNHPLSDRRVKNQELKDIQWVLPRNHAPSRHLLEVAFCKMGLASPQPV
VESGDPAVVRALLLGSDMVAAVSSHQLDFEVSEGILIPLQVNLTGTRREI
GLMTRQKALNSPATDALINCVREVIQSSNDK
>YP1951 lysR10, LysR-family transcriptional regulatory protein
MLIIKREADMHDLNDLYYYAEVVEHGGFSAAARVLGLPKSKLSRRLALLE
ERLGVRLIQRSTRRFAVTDVGRTYYEHCKAMIEEARAAQESIDLTRAEPR
GVVRITCPVALLQATVSTMLADFMASCPLVTIHLEATNRQVDPVAEAIDI
AIRVRPPPLQNSDLVLRVLGNRCQCLVASPELIGRQGEVNTPVDLTGWPS
LGLGQPQQTFIWNLEGPEKAHAAVYHQPRLVTADMNTLRSAALAGVGVVQ
LPLMMVTEQLAEGTLVRLLPDWSVRHEIIHAVYPSRRGLLPSVRSVLDYL
VQRFSQLDER
>YP1969 lysR11, putative LysR-family transcriptional regulatory protein
MFLSRKLEAFMAVVENGSLSKAARVMNRTTPPVAKSIKDFESIIGKKLFK
REKFGMSLTRDGEVLYNDLKDLYQQEKEITKKHLTGHVSNVINIYYDWGK
SENLTQLYKIAEKNNIQANIIKFYYENIDEIGDYDGNSLILSSEKIASER
FMLLNEVQDIGFGIYGRKDIINESEDIINILHSNVWLCNPTLYKSKFVKS
LEESVKKQYDKVSVRQVDNLACCLNFIYSGRYICITDSIMDDFNGDSKLD
FVNLTNFKDENKLYFYKSRSHSSVLNRLIDYIHTLE
>YP2174 lysR12, LysR-family transcriptional regulatory protein
MWSEYSLDVVDAVARTGSFSAAAQELHRVPSAVSYTVRQLEDWLAVPLFE
RRHRDVELTEAGVVFLKEARDVIKKMNDTRRQCQQVANGWRGQLNIVVDK
IVKPQRSRRLVLDFYRHFPDVELRVRYEVFNGVWDALSDGRADIAIGATR
AIPVGGRFVFRDMGFLSWLCVVSVDHPLALLSGPLSDEQLRPYPSLCLED
TALNLPKRDTWTLDNQQRLVAPDWSTGIDCLCAGLCMGMVPAHMVSPLIA
QGKLAAITLAEPLPDSPCCLTWEQNNHSPALAWLLDYLGDSVTLNTEWLR
DDSQQLIANN
>YP2277 lysR13, putative LysR-family transcriptional regulator
MWFLRQAIFHRWYGDGIPMRKLPSLRMLRVFEEACHTLSFSKAAEALFMT
QSAASRQIKQLENFLGKSLFIRGHRGLELTQDEMTMLPIVRQSLDLLEEG
VKHVQLSNPLQHLRLQVAPTFATRWLAPRLVTLLQRNSQLQIALISEIRQ
KYCDFDSAIRFGDIRRDLSNGHLLCYEQLCLVASPLVMQQGRFPPLTALP
QLHILNGDSRLTNWQQWLDAAQITVAAGHNALEFSTQDQVISACTTGAGY
AVLDILMISHELDNGLLRQVLPLTVTSTHGYWLEIPQDKGHSPRVIIFQE
WLQRELKRDIAKRYSKGEAKPLPAVL
>YP2312 lysR14, putativeLlysR-family transcriptional regulatory protein
MNNLPILSDLRVFLLVARRAGFAAAAEEMGVSPAYVSKRVAILEKTLNVA
LLHRTTRRVTISEDGERTYEWAQRILHDVDQMMDELSAIRQEPQGTLRVI
SSFGFGRRFVAPALSALAREYPRLELRFDVEDRLIDLVTEGVDLDIRVGD
NIGDNLIACQLAPNRRILCASPDFLQRYGTPKALSELPGFACLVIKERDH
PFGIWRLHNGTEEQSIKVTGPMASNHGEIVHQWCLDGQGIALRSYWDVKD
NIHSGKLVHILPEYFQSANIWAVYVTRLAMSAKVRVSVEFLRRYFNEHYG
AENTSANGGTLKR
>YP2604 lysR15, putative lysR-family transcriptional regulatory protein
MHYSPEALIAFVEAAALGSFSAAARKLRKSQSTISTAIANLEADLGLTLF
DRQARQPVLTDHGRRVLAHVQEILAASERLTDLSIRLAGQVETRLTFVLS
DTYYQPAHHENLLRRFEQRYPDVEFECLVAEDEDVIDLLQLKRAHIGVVE
MQERYPPDIAATRLAAQTEMAVFVLRGHPLTRLPHLQNEQLATTRQLCLN
TYNRTDHNQSQGLTWSAPSYLMLLEMAEQGFGWAILPRWLVEQFGREKLV
TLPVQGWPKMISIDAVWSKKSPPGPAGYWLLDQLTEGTNSPH
>YP2858 lysR16, LysR-family transcriptional regulatory protein
MDRITAAEVFVAIVDRGSMIAAAESLEMSRAMATRYLAQMEQWAGARLLH
RTTRKLSLTHAGEATLERCRRMLEFAQDMDLAEGQESEELRGLLRISCSQ
SLGQSALAIAVADYLRRYPQVAVDLQMNNRAINLVEERIDLALRITNELD
PNLIARPLSTCYSVVCASPAYLSVSGIPESPQDLTVHNCLTYSYFGESLW
HFDQSGVKSSVAVSGNLSANESVVLLSGALEGAGITLQPIYSVAPYIARG
ELIKLLPDYQPQAMGIYGVYASRRQMPTTLRTMLDFLVEWFATHPQWLST
MK
>YP2860 lysR17, positive regulator for lys
MIWVKLISSRFRSARMPAISLRQIEIFHGVMTTGNLTEAALLLQTSQPTV
SRELARFEQLVQLTLFERVRGRLYPTVQGLRLFEEVQRSYYGLDRIKQAA
EGIRQFQHAQLSIACLPVFSQSLLPAVCKPFIDRYPEVSLNVIPQESPLL
EEWLSAQRHDLGLTENIQTPAGTQRHTLMTVNEVCVLPADHPLREKSVLT
PQDFNGENFVSLSVTDSYRQLLDNLFAEEKVTRRLVMETHSAASVCAMVR
EGVGVSIVNPLTALDYLSKGRGSGVCVRPFSVDIPFTVSLIQPLHRPSST
LVDTFVGHLKQQTTLFQQRLATVIAPAC
>YP2948 lysR18, LysR-family regulatory protein
MDKFSAMTTFAKVVETGSFTRAADVLALPKARVSQRVSDLERHLGVRLLN
RTTRSLNLTEDGQAYFAKCQVILQEIDELEGALKGGSVEPRGKLRVEALV
SVARWVIAPSLHEFQARYPNISVRLGGSDRISHLLDNGIDCAIRGGHLED
SSQIARHVCDVHLGLYAAPAYLEAAGAVTHPQELSVHRRISWFTGQRNPF
IWSLQSASDAFELPAEEGLLFDDPDVALASCMAGSGICPGAPFAVESWVR
AGALVPVLPHWRFKARPIHIIYPSNRHLSARVRCFVDWSLEMMQANTSMR
ITPWELAERI
>YP2984 lysR19, LysR-family regulatory protein
MKVTLEELQAFTSVVDCGSITAAAEQRSQTTSGISRALSRLEQKLATTLL
RRTTRRLELTEEGALFLSHARQIIGAVDDAEEQIALRRLKPAGRLRVNAA
APFMQHVIVPMITGFRALYPQITLELNTDDLNIDLLEQRTDIAIRIGALR
DSTIHARLLGASRVRLLASPNYLQRHGTPHIIEALADHSLLGFTQPEFLN
QWSLPHLPGGRSSIIPNLAASSGETLRLLALQGEGIAELSDFMTREDQLA
GRLVEVLADQILETWQPINAVYYRNTQLAARITCFLDYVSEQIKLQGSHW
LRI
>YP0431 lysR2, putative LysR-family transcriptional regulator
MMSIDENTFAFSAKINNHAIYKHLENFIKIVECNSLSIAAHKLNITPSST
SRSLAQLEEKLGVVLLKRTTRSIVLTDAGDYLFHQARQLLLDLDETLVNT
HSFYNHPQGQLKITCSIAFGVCHLMHLFSQYKETNSDVCLSVDLNDQLVN
LNEEHFDIALRITSIPPPNFAIRRICTINWVYCGSKEYLMKRGVPATIED
LEQHDCLVNPNVSDAWLYKSTEGESVPLKIKNTVQANSSLGLLHAALHHQ
GIVCLPTYMLGDYITSGKLVPILLDYNAKDKEYGLYALYYPSKYNDPKIR
SFIDFMLDELSMDVPWDKWRADYQISLS
>YP3144 lysR20, LysR-family transcriptional regulatory protein
MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLGANLFTR
HRNNIRLTPAGERLVPYAEMLLNTWRLAKKEVIHSLQHTELSIGATASLW
EAYLTPWLQQLYEQQEELRLEARIALRNSLVKQLHERQLDLLITTEPPKM
DELACLLLGHFSLRLYSSFSLDLPKEDDTPNEHKNASEVPYIKLEWGADF
HQQENRLLDSEQAPILTTTSAHLTRQLLETTGGCAFLPEHWQKEYPQLVI
HPDIPPIVRPLYAVWLQNSDQQALIRQLLKTPMNNATQSVTRE
>YP3798 lysR21, lysR-family transcriptional regulatory protein
MARDRALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELD
VVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHIT
IVSEALSPAWKLFPLIDKLALKANTQVSILTEVLAGAWERLEQGRADIVI
APDMHFRASSEINSRKLYKVTSVYVASPDHPIHQEPEPLSELTRVKYRGI
AVADTARERPVITVQLLDKQQRLTVSTIEDKRRALLAGLGVATMPYEMVE
KDIAAGRLRVIGPEYSREADIIMAWRRDSMGEAKSWCLREIPKLLGK
>YP3861 lysR22, Transcriptional regulator
MLQEVQQVHEQLYAFNNTPTGTLRIGCSSTMAQNVLATMTADMLKAYPGL
SVNLVAGIPAPDLIADGLDVVIRVGALQNSGLFSRRLGAMPMVVCAAKSY
LSQYGTPAKPSDMANFSWLEYNVRPDSNFELIAPEGITTQISPQGRFVTN
DSQTMIRWLKAGAGIAYTPLMWVIEEIKRGEVEILFKHYHSDPRPVYALY
TEKDKMPLKVQVCIDYLTEYFKRVADVYQDYR
>YP3862 lysR23, putative lysR-family transcriptional regulatory protein
MVHMFISKNLLVFFTTVQEGSLTNAAVKLFTTPPPMSRSLKILEEELGFK
LFTRTTSGLKLTLEGAAFYQEIYPTYVRLTEITKNYKKNKNGIINIATYQ
LNSDHAGVICDYFIKKGNFNIELRENIGDISQMDIVISTKEIKGYDFDTE
LTASCEIKLLYASHLNDLPDRVEYLKKLPFIQSSIFCSSCCFKRFSHNLI
QQGYSGNVLRIDDARVRHEIIKKGAGISLSTNYFFDKKKISHSTEISFIS
DINFDITYYIYFKSSVINKEFFIQYITNNSLLQWQKAEKKH
>YP0705 lysR3, putative LysR-family transcriptional regulatory protein
MLLLSKSLRYFIITAQKESITLAADKLCITASPLSRNIKELEMKLGCELF
TRTSKGILLTSSGHFLYDKIIPVYNEIIELEKELISNHKLNVISEEKRLE
LNIGTDIFHYAHLLPIAKARFFNEENVNFSLEVSTSQDISQMLRENIYQV
FFSQRVLPKEHGIIHRKLSDEFMMIALQDDMYRDDMSQEDIISSYPLVQY
PRQNISSVVDELTNYLISRKLNPIRITLPNVNDHLSIINQGGAIGILPSS
VKKLINMHNYNIKLIPFVHKGEKLKVKSNAYYLCDNKDVFEENILPLLGD
SHL
>YP0981 lysR4, Transcriptional regulator
MRRTDHLGGITAFVTTAQQGSFTAAAEKLGLTKSAVGKSVSRLEDRLGLK
LFQRSTRRLSLTPDGERFLASCQSAIDILEQAEAELMSHICQPSGRLRVD
LPAAFGRQRILPILLDIIRLYPELALTVTFSERFVDLIEEGIDLVIRIGE
LADSSGLVARRLTTQKLVICASPDYLLYHGEPVSTDELSQHQCVVGFRRS
QPISWLLKESDGQISRFAPPPTHEFGDGDAMLAATLAGGGLSQLPLWLVG
KYLESGELREVLPGHSGGEMPISALWPKNRQLLPKIRYVVDTLVKAAEDG
LLD
>YP0990 lysR5, putative LysR-family regulatory protein
MQKLLFSGRINLKMIRYFLAVSDELHFGKAAERLHISQPPLSLQIKELED
ALGFPLFIRDSRNVVLTLAGEMMKAEMKDVFDNIENSLSRVSYIARHEQT
HLNIGIIGSALWHQLLEKFKHYKTVNPKTTWSLHELPPSKQYEALLNKKL
DIGFWRCADLEQNPALIYRRVEKQRVAVAVSNESLLVNKKILTLKDLSGQ
TLIFLTFNHSGYSKNLYNSCLNAGCTPQAIYQFDEPQTQLAFVNSNLGIA
LVPESMQEIPWPNIKFIPLKEDLSADLFAVYHPDSVTPALNKLLALF
>YP1284 lysR6, putative LysR-family transcriptional regulatoryprotein
MHITLRQLEVFTEVLKSGSTTQASVVLALSQSAVSAALADLEGQLGVQLF
DRVGKRLVTNEHGRLLYPKALALLDQAIEIEQLFLHDLGALRIAASSTIG
NYMLPGMIAKYRRDFPGTPLELNIGNSQDVIEAVADFRGDLGLIEGPCHM
PELVTQNWLRDELVVFAAPDSPLCHKALTLVDLADADWILRERGSGTREV
LDHLLLAQLPHFKLVMELGNSEAIKRAVRYGMGVSCLSRRVIADQLASGE
LVELNIPLPPLIRTLYLIHHRQKHISNALLRFLSYCQEEE
>YP1393 lysR7, putative LysR-family transcriptional regulatory protein
MDLTQLRMFCCVAETGSVARAAEQMHRVPSNLTTRLRQLELELGADLFIR
EKQRLRLSPMGHNFLCYANRILALSEEAMSITHAGEPAGNFPLGSMESTA
ATRLPNLLAAYHQRYPKVSLSLITGTSGEIIEQVRAGTLATALVDGPVQH
DELHGCRSFDEQLVIISCLERPPILQARDAVDETLFAFRPSCSYRLRLES
WFRQVGVLPGHIMEIQSYHAMLACVASGAGLALIPLSVLTLLPGHERVQV
HPLPPDIAHTATWLIWRKDAFSPNVRALKELIIENVEIP
>YP1671 lysR8, probable LysR-family transcriptional regulator
MLLDMKMELRHIRYFLAVAEERHFTRAAARLGIGQPPLSQQIKDLERELG
ALLFRRVSYGAELTEAGIAFLDVVKEIPVMAERAAQAAQRAVRGELGVLR
VGFTASSAFNSVVPTAIRAFRRAYPDVRLQLEEDNTTRLADGLNEGSLDV
AFLRPGFAGSERFHLRMLSEEPMMIVMAENHPAASYEEISLSAFRDETFL
LFPREIGLTLYDSVIESCRTAGFEPTIGQLAPQIASVINLVAAEMGVSIV
PASMSQVKVIGVVYRHIADQTPTAKLALAYRRGDTSPVLRNFVLTVFP
>YP1676 lysR9, putative LysR-family transcriptional regulatory protein
MTLKQLEAFYWAARCSNFSIAAERLHISISSLSKRIVELEASLGCTLFDR
SGYRAVLTETGQNLLPRAFALLESAAEIRNTLGASEGLSGICNFGVGELS
ALTWLPSFIASARLLYPKLLLAPHVDVGAALEGRVNKGEMDFAIIAGRSS
RQNILSLPIAQAQFVWMASPTLANTVGTADSALRQALPLITLPPGAGSSR
IIDAWLMAYGIASVARINCNSWGAIVGMLIASVGIGILPTSWAEKLSLHN
QLEYLPCSEPLAALNYSFQWRRDDPRPLIRKMRVLVADLADFSLNSPLPL
NNSLPLHHSLPLHHSLPQRD
>YP0397 lytT, two-component system response regulator
MVPCSLRGHDKIEKICGGCMLRVIIVDDEQPAREDLRERLNEEHGIEIVA
ECSNALEAIPAIQRLQPDVVFLDIQMPRINGLELASMLNPESMPHIVFVT
AYDEYAIRAFEEHAFDYLLKPLDHQRLAKTLTRLSRDLIVKNNLHKVIEP
ILRHIPCSGHNRIFLLKIEEVEYLSSELSGVHVVGTVQSGYTQLSLKTLE
EKTPFIRCHRQYMVNTEQLGEIQLMDNGAAEVITRSGKHIPVSRRYLKSL
KEKLGIA
>YP0125 malT, maltose regulon positive regulatory protein
MLIPSKLSRPVRLQNTVVRDRLLVKLSSAANYRLTLINCPAGYGKTTLIA
QWAADQSNLGWYSLDESDNQSERFATYLIAAIQLATGGHCSKSEALSQKH
QYANLSALFSQLFIELSNWDGPLYLVIDDYHLITNDAIHEAMRFFLRHQP
ENLTLIILSRTLPSLGIANLRVRDQLLELGMQQLAFNHHEAQQFFECRLS
SPLEQGDSSRLCDEVEGWVTALQLIALSSRQPNSSAQKSAKRLAGLNASH
LSDYLVDEVLDQVDSKARAFLLRCSVLRSMNDALIVRLTGEDNGQQLLEE
LERQGLFIHRMDDSAEWFCFHPLFATFLRQRCQWELALELPELHHAAAEG
WMALGYPAEAIHHALAAGDVGMLRDILLQHAWSLFHHSELALLEQCLTAL
PYPLLVQNPELALLQAWLAQSQHRYSEVNTLLEQAELAMQERKIPVDEIL
RAEFGALRAQVAINAGKPDEAEKLATDALKYLPMAHYYSRIVATSVTGEV
HHCKGELARALPMMQQTEQMARRHEAYHYALWALLQQSEILIAQGFLQAA
YETQEKAFELIREQHLEQLPMHEFLLRIRSQVLWSWSRLDEAEEAARKGV
EILANYQPQQQLQCLAMLAKCSLARGDLDNANVYIQRCEALQHGSQYHLD
WITNADKPRVIHWQMTGDKVAAASWLRQTEKPGMADNHFLQGQWRNIARV
QIILGRFDEAEVVLDELNENARRLRLTSDLNRNLLLSNTLYWQTERKGEA
QKALIESLTLANRTGFISHFVIEGEAMAQQLRQLIQLNALPELEQHRAQR
ILKDINQHHRHKFAHFDEIFVDKLLTHPQVPELIRTSPLTQREWQVLGLI
YSGYSNDQIANELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQMM
GYV
>YP0116 metJ, transcriptional repressor protein
MAEWNGEYVSPYAEHGKKSKQVKKITVSIPLKVLKILTDERTRRQVNNLR
HATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKILMRELGVDP
DTWEY
>YP3260 metR, lysR-family transcriptional regulatory protein
MIELKHLRTLQALRNTGSLAAAATQLHQTQSALSHQFSDLEQRLGFRLFV
RKSQPLRFTTQGEILLQLAEQVLPQIKQALQTCNEPHQTALRIAIECHSC
IQWLTPALDNFHKHWPQVTMDFKSGVTFDPQPALQQGELDLVLTSDILPR
SGLHYSPMFDFEVRLVLAPDHPLANKDRIEPEDLAPEVLMIYPVQRQRLD
VWRHFLQPAGVSPSSKNVDNTLLLIQMVSARMGIAALPHWVVESFERQGL
VVTKTLGEGLWSRLYAAVRDGEQRQPVTEAFIRSARQHACDHLPFVKDAV
RSNAGVPTAKPLSPQLQ
>YP1754 mfd, transcription-repair coupling factor
MSQQYRYSLPERRGDTRQLGQLTGSACAVECAEIIERHDGPVMLITPDMQ
TALRLRDEIQQFSPQPVSTLSDWETLPYDSFSPHQDIISARLSCLYHLPA
MKRGVIILPINTLMQRVCPHEFLHGHALVMKKGQHLSRDKLRAQLEQAGY
RSVEQVMEHGEFATRGALLDLYPMGSNEPYRIDFFDDDIDSLRVFDVDSQ
RTLVEVEQINLLPAHEFPIDKAAIELFRSQWREQFEVRRDNEHIYQQVSK
GIWPAGIEYWQPLFFSQQLPTLFSYLPENTLLVNTGDLESSAERFWQDVN
QRFESRRVDPMRPLLAPESLWLRVDALFNELKEWPRVQLKTEAQPAKAAN
TNLCYQPLPDLSVQAQQKAPLDNLRRFIESFHGSVVFSVESEGRRETLQD
LLARIKLSPTLITTLSQAANPGHYLMVGASERGFLDTDKQLALICESDLL
GERVSRRRQDNRRTINTDTLIRNLAELRPGQPVVHLEHGVGRYLGLTTLE
AGGIKAEYLILTYAGEDKLYVPVSSLHLISRYSGGADDNAPLHRLGSDVW
SRARQKAAEKVRDVAAELLDIYAQRAVKSGFKFKHDREQYQLFCQSFPFE
TTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVTNNK
QVAVLVPTTLLAQQHFDNFRDRFATWPVRIEMLSRFRSAKEQQVILEQAA
EGKIDILIGTHKLLQSDLHWHDLGLLIVDEEHRFGVRHKERIKAMRADVD
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVIRE
AILREILRGGQVYYLYNDVENIEKVTQKLAELVPEARITIGHGQMRERDL
ERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHLGLAQLHQLR
GRVGRSHHQAYAYLLTPNPKAMSTDAKKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTTIGFSLYMELLESAVDALKEGREPSLEDLTSN
QTEIEMRMPVLLPEDFISDVNIRLSFYKRIASARNETELDELKVELIDRF
GKLPDPARYLLHTAELRQQAQKLGIKRIEGNERGGFIEFGENNKVDPVYL
IGLLQRQPQIYRLEGPTKLKLVQDLSDRAQRLKFITELLAAFAQHRIA
>YP2064 mlc, putative ROK family transcriptional regulatory protein
MIMDGQPGHIDQIKQTNVGAVYRLIDLLGPISRIELSKRAQLAPASITKI
VRELVEVHLVKETEYQDVGSRGRPAIGLVLDTEAWHYVSGRISRGTITLA
LRDLSSKLVVEEQIPLPDRHPEPLLSRILNEVDQFFIRHQKKLERLTAIA
ITMPGIIDAPAGIVHKMPFYDVNEMSLGPALEQRTGLPVYLQHDICAWTM
AESLYGASRGCQNIIQVVIDHNVGAGVITSGRVLHAGSRSVVNIGHTQVD
PYGKRCYCGNHGCLETVASIDNMLAIAQQRLNSSMSSLLHHTPLSVESLC
DAALAGDQLAKDIILGVGHSVGRIIAIMVNLFNPEKILVGSPLNKASSIL
HPAIASCIRQQALPAYSENILVESTEFFNQGTMPGAALVKEALYNGSLLV
KLLQG
>YP3977 mtlR, mannitol operon repressor
MIEKKQAFENRVLEHLNAGKTVRSFLMAAVDLLAEALNILVVQIFRKDDY
AVKYAVEPLLVGDGPLSELSVRLKLVYALGVITRHEYEDAELLMALREEL
NHDGTEYRFTDDEILGPFGELHCVDELPPVPTFLRPDEADASLIAMQRQR
YQQMVRSTMVLSITELLSRISVKQVSKLSPLSQG
>YP0724 nagC1, Transcriptional regulators
MRIGIDLGGTKIEVIALANDGQVLFRKRVGTPRHDYQKTIQAIADLIADA
EHATGEQGSIGVGIPGTLSPFTGKVKNSNSVWLNGRELDKDLSVFLNRPV
RLANDANCLAVSEATDGAGAGKKWVFAAVIGTGCGSGIAIDGGSHAGGNG
IAGEWGHNPLPWQDEEEREYAQEVTCYCGKKGCIETFVSGTGFATDYFRL
SGKPLKGHEIIELVEQGDVIAEQAMNNYERRFAKSLAHVINLFDPDVVVL
GGGMSNVDRLYDTLPALISPWVFGGECETPILKALHGDSSGVRGAAWLWN
TLRP
>YP1088 nagC2, putative N-acetylglucosamine regulatory protein
MATRFYHKRVTLLMSTGGQAQIGNVDLVKQLNGAAVYRLIDQQGPISRIQ
IADLSQLAPASVTKITRQLLERGLIKEVDQQASTGGRRAISIVTENRQFH
TVAVRLGRNDATITLFDMSGKSLGEEHYALPERTQETLEHALFNIISQFI
DAYQRKLRELIAIAVILPGLVEQSKGIVRYMPHISVSNWPLVDNLQARFN
VTSFVGHDIRSLALAEHYFGATRDCEDSILVRLHRGTGAGIIVNSQIFLG
SNGNVGEIGHIQIDPLGDRCYCGNFGCLETVASNAAIENRVKHLLTQGYP
SKLSLDDCHIGAICKAANRGDLLACEVIEHVGRYLGKAIAITINLFNPQK
VVIAGEIIEAEKILLPAIQGCINTQVLKNFRQNLPIVTSQLNHQSAIGAF
ALAKRAMLNGVLLQRLLETHP
>YP1503 nagC3, Transcriptional regulators
MAMAMAHSTKPAGAVTQAIADIRMVLDIEEVVVNESVGLTDGMLDRVRKS
LQAFPARFNLPVTPMLGGGTYRMTECCQRSSASVRRVHDRPGVMSR
>YP1758 nagC4, Transcriptional regulators
MKKGRLMYYGFDMGGTKIELGVFDENLQRIWHKRVPTPREDYPQLLQILR
DLTEEADTYCGVQGSVGIGIPGLPNADDGTVFTANVPSAMGQPLQADLSR
LIQREVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVGGGLIVNGSI
VSGRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRGCIENYISGRGF
EWMYSHFYQHTLPATDIIAHYAAGEPKAVAHVERFMDVLAVCLGNLLTML
GSPFGRGGWGVV
>YP1759 nagC5, Transcriptional regulators
MVGGGLSNFEKIYQELPKRLPAHLLRVARLPRIEKARYGDSGGVRGAAFL
HLAEK
>YP1879 nagC6, putative transcriptional regulatory protein
MKKRVCAGINIKDTMNIRPERLELRGSQRLLLELIRRHAPVTRAELARLS
NLTAGAITQQCRELIFAGLVVEGERNTGQRGQPSLPLRLNPGGGCAIGLS
FSPGFIDMTVVDLSGRQLLSVAEPHQENQPLTATLCQIKTLVEQTLKKRQ
LQHARIIGIGYAVPGFLKADGHKRHCVPWLHTWREADLQQVFADNLPWPT
RVENNANASAIGELYSGEWNNYSDLTFIDLGYGIGAGVISGHKLLRGGFF
NAGEVGMAFPSGTPRPSYKDLLATLEREGFSETQLPVLSAGRHPVLEKWF
ERCCDQVQQTVFGCVQWVDPQLIVLGGAMPKPIISRLVQEISQRLNTCLD
PERPKVTLAASSMGAESASRGAAMIPLYQVINED
>YP2644 nagC7, putative sugar kinase
MGKGLALDIGGTKIAAAVVTESGMLIGRQQIATPRGGAGQLAAALETLIA
PYRHQVDFIAVASTGIISGGRLTALNPANLGGLADFPLYDCIRSISDLPC
VLLNDGQAAAWAEYQALGDKNDNMMFVTVSTGVGGGIILNKKLLVGQRGL
AGHIGHTLSDPHGVLCGCGRRGCVESVASGTAIGAETLGWKQPVSAATVF
DMAQQGDAQAGKVINRSAAAIAQMLADMKMALDLEVVILGGSVGLAVGYL
ERVVAAQKTLPGIYRVPVQEAHHRQDSGLLGAALWARTSL
>YP2664 narP, nitrate/nitrite response regulator protein NarP
MLFELQGELFIMTKSHTILIVDDHPLMRRGIKQLLGLDSRFDVVAEANNG
SDAITEAAKFQPDVILLDLNMKGMSGLDTLKALRHNGSDARIIILTVSDA
RSDVYAMIDAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSR
HEQVNPFSELTERELDVLQEVARGMSNKQVAFELHISEETVKVHIRNLLR
KLNVRSRVAATIMYLENKKY
>YP3709 nhaR, transcriptional activator protein NhaR
MRMSHINFNHLYYFWQVCKEGSVVGAAEALFLTPQTITGQIKALEGRLGG
KLFKRRGRGLVPSELGQLVFRYADKMFMLSQEMLDIVNYRKESHLLFDVG
VADALSKRLVSQVLETAVVEHEKIHLRCFESTHEMLLEQLSQHKLDMILS
DCPVDSSQQEGLFSVKLGECSVSFYCRQPVPDLPFPASLQQKRLLIPGRR
SMLGRKLLNWINSKGLKVEVLGEFDDAALMNAFAVYHDAIFVAPTIYAAD
TYANDSEIIEIGRLDNVQEEYYVIFAERMIQHPAVQRVCNKDFSALFNC
>YP0568 nlp, putative regulator for maltose metabolism
MILRKSDWHPADIIAALRKKGTTLAALSRKAGLSSSTLANALTRPWPKGE
WLIAECLDIHPSEIWPTRYFDPKTGNLLDRKVRIRPTTTQP
>YP1143 nlp-2, putative regulator
MFFRAWDNYPNTSDGGVNVMDKQDWHPADILAGLKKRGTTMAALSRKSGL
ASSTLANTLLRPWPKGERLIAEVLELHPAEIWPSRYLKPKKSPAESVNPG
>YP0586 nusA, N utilization substance protein A
MDEATRMNKEILAVVEAVSNEKSLPREKIFEALETALATATKKKYEQEIE
VRVSIDRKTGDFDTFRRWVAVDEVTMPTREITLDAAQFEDPSLQLGDYVE
DQIESVTFDRITTQTAKQVIVQKVREAERAMVVEQFRQYLGQIVTGIVKK
VSRDSIALDLGHNAEAVIGREDMLPRENFRPGDRIRGVLYDVRPEARGAQ
LFVSRSRSEMLVELFRIEVPEIGEELIEIKAAARDPGSRAKIAVKTNDKR
IDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVA
SIVVDEDKHTMDVAVEASNLAQAIGRNGQNVRLAAQLSGWELNVMTADDL
QAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSSLEELAYVPMKELLE
IDGLDEDTVEALRDRAKAALTTLALAQEESFGDQKPADDLLNLAGLERSM
AFKLAARGVCTLEDLAEQGIDDLADIEGLSDEQAGELIMAARNICWFGDN
A
>YP0750 nusB, N utilization substance protein B
MKPAARRRARECAVQALYSWQLSKNDIADVELQFLSEQDVKDVDIAYFRE
LLSGVAVNAASLDALMAPFLSRQLEELGQVERAVLRIALFELSKRDDVPY
KVAINEAIELAKTFGAEDSHKFVNGVLDKVAPTVRKRK
>YP3115 nusG, transcription antitermination protein
MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKLHDMEELFGEVMVPTEEVV
EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP
APISDKEVDAIMNRLQQVGDKPRPKTLFEPGELVRVSDGPFADFNGVVEE
VDYEKSRLKVSVSIFGRATPVELDFSQVEKG
>YP0137 ompR1, transcriptional regulatory protein
MQENHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFH
LMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGAD
DYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAIIAFGKFKLNLGTR
EMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERS
IDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGNKA
>YP2633 ompR2, putative response regulator
MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIIL
DIMMPELDGYKVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYIS
KPFGIHEMRARIKTIVRRCLRKVPESAEDAGFPFGDLMVFPNELCAIRGE
TRLELSLREVNILRYLYQHKGRVVTRDMLFDAVWGYDHLPQSRTLDQHIS
KLRKTIELDPVHPVLIRTVHGAGYRYQGTAQSLEK
>YP2719 ompR3, transcriptional response regulatory protein (sensor BaeS)
MHESPLSASQSGSVLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVAT
VRQTPPAIILLDLMLPGSDGITLCREIRRFSDIPIVMVTAKTEEIDRLLG
LEIGADDYICKPYSPREVVARVKTILRRCSQQRHQPTDDAPLLINESRFQ
ASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDYRVVTDRTI
DSHIKNLRRKLELLDGEKPFIRAVYGMGYRWEAEMCRLL
>YP3321 ompR4, putative response regulator protein
MKPAILVVDDDTAICEVLRDVLNEHVFDVLLCHSGNEALQITATQPSIAL
ILLDMMLPDINGLLVLQQVQKLRPSLPVVMLTGMGSESDMVVGLEMGADD
YIAKPFNARVVVARVKAVLRRSEVLAIESSSVKACGLQFNGWRLNTDRCQ
LMNPQQQQIDLTQGEYGLLLSLMQNARKVLSREKLLELTHRESLDVFDRT
IDVLIMRLRRKIEVNPHQPTLIRTIRGVGYVFAADIIHA
>YP3133 oxyR, oxidative stress transcriptional regulatory protein
MNIRDLEYLVALAEFRHFRRAADSCHVSQPTLSGQIRKLEDELGIMLLER
TSRKVLFTQAGLLLVEQAKTVLREVKVLKEMASLQGESMSGPLHIGLIPT
VGPYLLPQIIPMLHKTFPKLEMYLHEAQTQNLLAQLDSGKLDCAILALVK
ETEAFIEIPLFDEPMNLAIYADHPWANRERVEMHELAGEKLLMLEDGHCL
RDQAMGFCFQAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPNERQ
RDGVCYLECYKPVPKRTIALVYRPGSPLRGRYEQLAEAIRDHMQERMAPS
LEQAI
>YP0264 pdhR, pyruvate dehydrogenase complex repressor
MKLVLPIDSAPLAETIHSIRLTPNMAYNKIRQPKLSDVIEQQLEYLILEG
TLRPGEKLLPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQGGGTFVQT
NLWQSFSDPLAELLADHPESQFDLLETRHALEGIAAYYAALRGTDEDLQR
IRECHTVIQQAQDNGDLDAEADAVMQYQVAVTEAAHNVVLLHLLRCMGPM
LEQNVRQNFELLYLRREMLATVSSHRARIFEAIVAREPEKAREASHRHLA
FIEEILLDLSREHSRRERSLRRLQQRKE
>YP2367 pecT, LysR-family transcriptional regulatory protein
MTNANRPIINLDLDLLRTFVAVADLNTFAAAAAAAAAAVCRTQSAVSQQM
QRLEQLVGKELFARHGRNKLLTEHGLQLLGYARKILRFNDEACTSLMYSN
MEGSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSS
GEVDLAITTAKVDSHPHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPS
LYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAGLGVTARPIEMMSPD
LRVLGETEGLPGLPETRYVLCKDKQCDNELALAIFSALQNSYQHTMSSES
SLILDSDYLTGDED
>YP0628 phnF1, probable gntR-family transcriptional regulatory protein
MNLSRPPTSYPTRYQHIAAQLEQELRGHYRCGDYLPSEQQLADRYQVNRH
TLRRAVDELVERGWLQRRQGIGILVLMRPYDYPLHANARFSQNLLDQGSD
PTSERLLAVLRPAAEPVAKALSLTEGESVIHLRTLRRVNGVPVCIIDHYL
PDLSWWPVLQRFHSGSLHQFIAQHLQQPLKRSQTRISARRAQAKESALLE
IATHAPLLCVRTLNTRVDSQQVAEYSLSLTRADMIELTMEH
>YP1504 phnF2, GntR-family putative transcriptional regulatory protein
MPGGMGGKGVDRKFIETLKTYCDDANRGGGPLYQRLEKGFRDLITRGELK
AGYAIPSERELSERLNLSRVTVRRALSELANAQVIVQRRGARSTVAGRVE
KPLSSLTSFSEDMISRGYEPGARWLQKELTHASPSEIIALNLSPGALVWR
LKRLRTVDEHPMAVEIAVVPQMFIPEMDELRDSLYSVLQLHGFMPARALQ
RIRAEPLSRDHSQLLDMPAHSPALHVERHCYLEDGRPIEYTHTWYRGDSY
DFLVELQRDITPGLS
>YP0727 phoB, phosphate regulon transcriptional regulatory protein
MTANILAGLMMARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVA
RLSEPFPDLVLLDWMLPGGSGIQFIKHMKREALTRDIPVMMLTARGEEED
RVRGLEVGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLD
PSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYVWGTNVYV
EDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRFSTRY
>YP1764 phoP, response regulator protein
MRVLVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAII
DLGLPGEDGLSLIRRWRSHQENLPILVLTARESWQDKVAVLEAGADDYVT
KPFHLEEVIARMQALMRRNIGLASQIIELPPFQIDLSRRELCVNQQQIKL
TAFEYTIIETLIRNAGKVVSKDTLMLQLYPDAELRESHTIDVLMGRLRKK
LLAEHQGEVITTIRGQGYRFDVN
>YP1291 psaE, putative regulatory protein
MSHCVVLNKLESVLIIGDSRYALSKNEVLLLECLYLRAGDVISHDELLTT
CWPDRVVSPTSLPVAIKHIRDVFRKITRSEVIKTYKNEGYSYQKDSVLII
IDDGSTEKESHSAAYTRKEKPDIPIKLVGLQILSHLNSTFFIAIMMVIII
IFFMVGGNDIVSFIDSDTNSVIITNVTTKMNGPTAGLPKVKNSMIFKDDF
GLVIICDQSECKQQ
>YP2139 pspA, phage shock protein A
MGIFSRFADIVNANINTLLDKAEDPQKLVRLMIQEMEDTLVEIRSTSARA
LAEKKQLLRRIDHSESQQQEWQEKAELALRKDKEDLARAALIEKQKVMTL
VETLKREVATVDETLSRMKHEITELENKLTETRARQQALTLRHQAASSSR
DVRRQLDSGKLDEAMARFEQFERRIDHMEAEAETVGVGKQKSLDQQFAEL
RADDEISSQLAALKAKMKSVE
>YP2137 pspC, phage shock protein C
MANVLGSKKLYRVPEEGMIKGVCAGLAHYFDIPVRLVRVIMVLSLFFGLF
VFTVAAYIILAFMLEPVSAASVTNDNDVTPRQLLDQLQHELAQGEQQLRQ
VERYVTSDTFGVRSRFRQL
>YP2140 pspF, psp operon transcriptional activator
MANFIMNEQLDNLLGEANAFVDVLEQVSGLAKLNKPVLVIGERGTGKELI
AHRLHYLSERWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHLGR
FERADGGTLFLDELATAPMLVQEKLLRVIEYGHLERVGGSQPLQVDVRLV
CATNDNLPALAAAGKFRADLLDRLAFDVVQLPPLRERQQDIMLLAEHFAI
LMCRELGLPLFSGFTATAKEQLLEYRWPGNVRELKNVVERSVYRHSDSSL
PLNNIIINPFASNQKGEIEGVDTPNEGGAVLPALPVDLKHWLHTSEHQML
TRALKQARFNQRKAAHLLGLTYHQLRGLLKKHTILSGELPQVSDSGE
>YP1164 ptxR, putative LysR-family transcriptional regulatory protein
MLKENFNELQSFLVVARERSFTKAAGKLGVSQSALSHAIKGLEERLNLRL
LTRTTRSVAPTEAGERIIACLEPRLADLEQELETLLQLNGTVSGNIRLSA
GEHAARSLLWPKLKPFLRKYPEINVELVVDNGFVNIVDGRFDAGVRLGES
VDKDMIAVKIGPEMRMAVVGSPEYFMANAIPVTPHELQHHRCINMRLPTA
GGLYHWEFEKEGKPLRVKVEGQLTLNILPERIDAAQSGFGLACVPEDSIQ
AFLRSGKLIQVLEAWCPSFPGYYLYYPSRKQHPPVFALMIDALRYSD
>YP0009 purR1, Transcriptional regulators
MSPVWQGYRQAMARAGLPIIAGYEVVSDFEFGGGLVALKQRLNNPEAEPQ
VLPLTPELIERGSVSLR
>YP2929 purR10, LacI-family regulatory protein
MSVTIKDVAKRAKVSISTVSYAINGSPKITEETRLRVLKIAQEMNYTANN
NAKMLKAKKSGAIGLFFNSWFGPVYSELVRGIEERVHREHYDLVACSLYG
GEQSTAHKYLRDRSVDGAIILTSSFDDRFLQSVASDVLPIVVLDRELKSP
HIYNVLIDNFGGAFKAVNALLAKGCRDIYFFSGPEQSYDNQKRLDGFIAA
LGYHNIQLNRDFIIHSNFTEADAYLKMQALIAAGRVPSAIFSANDEMAIG
ILRAAKEHNIRVPDDLKVVGFDNIYASSVLTPSLTTINHHKYEMGVISAN
TLLRAIKEETNIDAVTLLPTELIERETL
>YP3396 purR11, putative AraC-family transcriptional regulatory protein
MFEKRYRITLLFNANKVYDRQVVEGVGEYLQASQCNWDIFIEEDFRCRID
NIKDWLGDGVIADFDDRQIEQLLANVNVPIVGVGGSYHQSEDYPSVDYIA
TDNKALVNAAFMHLKEKGLNRFAFYGLPASCGMRWAQEREYAFRQLVSAE
QYQGVVYQGMATAPDNWQYAQNRLADWVQTLPHQTGIIAVTDARARHLLQ
VCEHLDIAVPEKLSVIGIDNEELTRYLSRVALSSVVQGTRQMGYRAAKLL
HQRLKLRQKQQTDPPLQRILVPPVKVMARRSTDFRSLRDPAVIQAMHYIR
HHACKGIKVEQVLDAVGMSRSNLEKRFKDEVGQTIHGVIHEEKLDRARNL
LAATSLPINEISQMCGYPSLQYFYSVFKKGYSITPKEHRDKYGEVSY
>YP3543 purR12, LacI-family regulatory protein
MNGKLKIQEIANQTGLSISTVSRVLAGKGNTSAKAKQQVMAYAKSQGILQ
NLSSGRLMLNNIMVFAPHRAFDVRTDIFYYKVIQGITQAVSQHEVMIRYC
GLSETHSDISLFLDKMTHPQSEAAIIIGIDDPRIHALAASLHKPAVLINC
RDKEMSLDSVSPDHQSIGEFSAHYLIQQGHRRILTLQCLRRNTMELRLLG
IKDAFASNNMRFDDHQHLITTHGFGAEEAEQAITTFFTACEDESRLPTAI
LVGGDYMAVGAVNALNKLNVNVPNRVSVMSMDGFNLAEIHDVPLTAVHVP
RDELGAEAIQLLQRRVLRPDAPFSNLLLQGKLVVRSSVKQVNQNRAMPAA
NKPTDQIYDL
>YP0167 purR2, LacI-family transcriptional regulator
MVTLEDVAVLAGVSRATVSRVVNGDTNVKALTREKVEQAVAVLGYTPHPA
ARALASSQSNTLGLVTTSYRGGFFGALMDFVQTETESQGKQLLVTQGRDN
ADKEWLAIQRLYNLRCDGLILHVRFLSDERLRQLAAANRPFVLLDRLVPD
LEARCVTFDHHHASQMATQVLIDAGHRDIACISGSSQRQSSVLRIQGFLD
AMQLAGLEPVACLEGVYDLESGYLRADEILKQPRLPTAIYCCNEEMAIGA
LLAINKHGLQVPQDISLICYDSGERAPFVCPALTSVHFPIVEMAQYATQL
LIDPLIPAVNFPPAIIMRDSVMPPKTAC
>YP1471 purR3, Transcriptional regulators
MLAFFCTILSRMSLKKIANELGLSSTTVSRALNGYDDVAAETRERIIDAA
KRLGYQPNSLARRLKMGRTDAIALAYPSRPRVLNNSTFLEMISWIGIELG
KRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPEDFRLQYLQKQ
NFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDAR
ISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVP
PTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTP
IVQNTRTSVGKQIASMICDLLGGKDPKELQVLWQPEIGEGETDGVNRRG
>YP1772 purR4, sucrose operon repressor LacI-family
MVSLKEVANLASVSLMTASRAINSPEQLRPETYQRVMQAIESLNYVPDFA
ARKMRGHATKTSTLAVLAWDTATTPFSVEILLSIELTAREFGWNSFLVNL
TSREDSQRALNQLLAQRPDGIIFTAMGLRQVTIPERFRDKNIVLANCVSE
SHSIPSYIPDDFDGQYQAMKLLLQRGYQRPLCLYLPECTLAGKARRAGVE
KAWQESALPTEQLNQCHIAWGDEHYQDVIPLLERHCPKGKPNFDVLICGD
DRIAFLAYQVLLAKGVVIPQQVAVIGYGDMVGMGELYLPPLTTVQLPYYD
IGRQAALHLIRGRESRAIHRLPCPLLERGSIRDSMPNNCVPLFSKQR
>YP2173 purR5, purine nucleotide synthesis repressor
MATIKDVAKHAGVSTTTVSHVINKTRFVAENTKAAVWAAIKELHYSPSAV
ARSLKVNHTKSIGLLATSSEAPYFAEVIEAVENSCYSKGYTLILCNSHNN
LDKQKAYLAMLAQKRVDGLLVMCSEYPDQLLGMLEDYRNIPMVVMDWGTA
RGDFTDSIIDNAFEGGYLAGRYLIERGHRDIGAIPGQLARNTGGGRHQGF
LKALEEANIPVREEWIVQGDFEPESGYKAMHQILTQKHRPTAVFCGGDIM
AMGAICAADELGLRVPQDISVIGYDNVRNARYFSPALTTIHQPKERLGET
AFAMLLDRIVSKREDPQTIEVHPKLVERRSVADGPFRDYRR
>YP2297 purR6, LacI-family transcriptional regulatory protein
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESIN
YHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKN
GINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVI
TTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELT
SLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKA
AKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDI
QDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>YP2313 purR7, putative LacI-family transcriptional regulatoryprotein
MSKAYSNATIVDIARRANVTNITVSRTFNQPGLVKQETREKIHAIAKELN
YVPNAFAQGLKRSSSQIIGIVTSSMYNPFYSELIQTVSRIARTQCYQIML
FDTDGSEEAEMEAIQALFGYKACGILLSPVRDDKNYQPAYLDLAETYRVP
LILIDRDIYNRQLSGVFLNNKEIGLLAGKYLSEQPERKMLIIGGPAESEI
TRVRIEGIINALENKKNDVHIINGDYDFISQEAAVRDYLSVPQNQPDYII
GLNGILTLGAIAICHELKIYNNIKFFSIDEPPKAADYGLHIAGVYHDTQM
LGEIAAELLFNAIKKPHNDQAVRREFFTGSLLTH
>YP2348 purR8, putative LacI-family transcriptional regulatory protein
MKNQRVTLQDIALLAGVTKMTVSRYLRMPEKVAPETGERIAQVMAEVNYS
ADPESETSLNQKSPRIGILVPSFNNQIFSDLLAGIESITVANGYQTLVVN
YNYNKAREEEQIINLLSCQISGLILTDSEHTLRADKYLNAAEIPIAQVME
LEPQENRITVGFNNYQAAYDMTTTLLASGKQHIVYFGSMSDARDRKRYQG
YSQAVTDAGFTPLHITPNKVSSVSIGAGMLALARQMYPDVDAIFCTNDDM
AVGVLQECLKLGVAIPAEMAISGFHGLDIGQATTPILASVTTPRFEMGKV
AAEILIKKIKKIPTIEQVDLHYRISLGGTI
>YP2379 purR9, putative transcriptional regulator
MQLDVWPVSRDMAGIALHCRSPFEWPGFSRQGISMEKIRKRRNTGRVTLQ
EVADYAGVGSMTVSRALRTPEQVSDKLREKIEQAVEKLGYIPNRAAGALA
SGHSDTVAVLIPSLTDKASSRFMQALQQILNKNEFQLLLGCHEYNQRKEA
EILMTLLQSHPAAVVIFGSQLADKTYQILERTNIPIVNVVGSYFKGAKIT
LEAAFFESAYELTRHLLERGYQHIGYLGAHRDNQLQRQQLNGWHKSMLEH
YKNADQTVTTPDAASLQFGRYALTEILLRQPELDAVICSHEDIALGVLFE
CQRRLLKIPSGIAVACLDGSESCDQTHPTLTSMRIDYKKMGKEAGKMLID
MLNEDDAGVKSVPLSQSFNYKFEPRQST
>YP0919 rcsB, probable two component response regulator component B
MNNLNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLSKLDA
NVLITDLSMPGDKYGDGITLIKYIKRHYPDLAIIVLTMNNNPAILSSVLD
LDIDGIVLKQGAPADLPKALAALQKGKKFTPESVAKLLEKISANGYGDKR
LSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKLGVDNDIA
LLNYLSSVTISQVDKEL
>YP0037 recG, ATP-dependent DNA helicase
MKGRLLDAVPLSTLSGVGASQAGKLAKIGLETIQDLLLHLPLRYEDRTRL
YRIGDLLPGLSVTVEGEVLRSDISFGRRRMMTCQISDGSGVLTLRFFNFN
AAMKNSLSVGKHVIAYGEAKRGNNGPEIIHPEYRVHGENIGVELQESLTP
VYPTTEGIRQATLRKLIDQALAMLDTCVIAELLPIELSRSLISLPEAIHT
LHRPPADIQLADLEQGKHPAQRRLIMEELLAHNLSMLAVRAGAQSYRALP
LMAEEQLKQRFLAALPFTPTQAQQRVVAEIERDMTQSFPMMRLIQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHATTFRQWLEPLGFSVGW
LAGKQKGKARLAQQEAVASGQVSMVIGTHAMFQEQVQFSGLALVIIDEQH
RFGVHQRLTLWEKGEEQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRSDVIQRVKNACLEEGRQAYWVCTLIEESELLE
AQAAEVTCEELKIALPEIKVGLVHGRMKGPEKQAIMLAFKQGELQLLVAT
TVIEVGVDVPNASLMIIDNPERLGLAQLHQLRGRVGRGAVASHCVLLYKT
PLSKTAQMRLQVLRDSNDGFVIAQRDLEIRGPGELLGTRQTGSAEFKVAD
LLRDQAMIPEVQRVARHLHQQYPEHAKALIERWLPERVRYTNA
>YP0306 relA, GTP pyrophosphokinase
MVAVRSAHLNPAGEFALDDWIASLGLANPQSSERLAETWRYCEQQTQNHP
DASLLLWRGLEMVEILSTLSMDNDSMRAALLFPLVDANIVDETTLTEQFG
KGITYLVHGVRDMDAIRQLKATHNDSMSSEQVDNVRRMLLAMVEDFRCVV
IKLAERIAHLREVKDAPEDERVLAAKECSNIYAPLANRLGIGQIKWELED
FCFRYLHPDEYKKIAKLLHERRIDREQFIDDFVASLHKAMADEGIKADIY
GRPKHIYSIWRKMQKKSLAFDELFDVRAVRVVVERLQDCYAALGIVHTHF
RHLPDEFDDYVANPKPNGYQSIHTVVLGPRGKTLEIQIRTRQMHEDAELG
VAAHWKYKEGAVAAGRSSYEGRIAWLRKLIAWQEEMADSGEMLDEVRSQV
FDDRVYVFTPKGDVIDLPAGSTPLDFAYHIHSDVGHRCIGAKISGRIVPF
TYQLQMGDQIEIITQKQPNPSRDWLNPNLGYITTSRGRSKIHNWFRKQDR
DKNILAGRQMLDDELEHLDISLKEAEKLLVPRYNMNSMDEVLAAIGGGDI
RLNQMVNFLQGKLNKPTAEEADLEALRHLNNKHQPAPRNASKDSGRIVVE
GVGNLMHHIARCCQPIPGDQIIGFITQGRGISIHRADCEQLAELESHAPE
RIVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASR
SDTKKMVATIDMDIEIYNLQVLGRVLAKLNQLPDVIDARRLHGN
>YP3278 rfaH, putative regulatory protein
MKSWYLLYCKRGQILRAKEHLERQTVNCWTPIVAIEKIVRGKRIEVIEAL
FPNYLFAEFDPENIHTTTVSATRGGSHFVRFGTQPAVIPATVIADMQAHA
VDKIIAPEVPKPGDIVKIIDGVFAGLQAIYTEPDGEARSMLLLNMLNSQI
KHSLDNRQFEKQ
>YP3185 rffC, putative lipopolysaccharide biosynthesis protein
MRQPRWRKPVMANICWIYYMPVHASIEPLGWESEFFQRQSAKLIFSDSAP
PLNPAELAAFTLVQAKVPTHRLDLIDALSQLDFHLVEGEIDLSLVVGEKE
GIGTENATSEPNMGAYSLRVATEADIPQLRRVAASAFALSRFRAPWYDAQ
DSGRFYALWVEKAVLGTFDHQCLLVLDPTDQPVGFVTLRDLQDGSARIGL
LAVFPGAQSKGIGLRLMSAAKQWCQHHGLHRLRVATQMSNIAALRLYIRS
GASIESTAYWLCRG
>YP0488 rhaR, L-rhamnose operon transcriptional activator
MRAPLLLESRDYLLSEQMPVAVTNRYPQETFVEHTHQFCEIVIVWRGNGL
HVLNDHPYRITCGDVFYIQAADHHSYESVHDLVLDNIIYCPERLHLNAQW
HKLLPPLGPEQNQGYWRLTTQGMAQARPIIQQLAQESRKTDSWSIQLTEV
LLLQLAIVLKRHRYRAEQAHLLPDGEQLDLIMSALQQSLGAYFDMADFCH
KNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAAR
CGFEDSNYFSAVFTREAGMTPRDYRQRFIRSPVLPAKNEP
>YP0487 rhaS, L-rhamnose operon regulatory protein
MTVLHSIDFFSSSSAPVAIEARAPQSAFPEHHHDFYEIVIVEEGAGVHVF
NGNPYTLSRGCVCFVRDHDRHLFESTDDLFLTNVLFRAPDAFRFLSGVGH
FLPRECDGVYPSHWRVNGQVLQQIKCLIACLEHAPKSDQVEDIALHESVF
MQLLVKLWQGCQTQVGDDQEGRLYQLLDWLQNNYSEAVEWPELADRFALP
LRTLHRQLKNKTGMTPQRYLTRLRLLQARHQLCYSDNSVTDIAYLCGFGD
SNHFSTLFKREFSQSPRDLRSQL
>YP3176 rhlB, putative DEAD-box helicase
MSKTHLTEQKFSDFALHPLVVEALENKGFQYCTPIQALALPLTLSGRDVA
GQAQTGTGKTLAFLASTFHYLLSHPAEEGRQTNQPRALIMAPTRELAVQI
HSDAESLSQVTGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNYINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPSVDKRLNMLFSAT
LSYRVRELAFEQMNNAEYVEVEPLQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRCIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILE
DFTKGDLDILVATDVAARGLHIPLVTHVFNYDLPDDCEDYVHRIGRTGRA
GESGHSISLACEEYALNLPAIETYTGHSIPVSKYNSDALLTDLPAPKRLA
RTRTGNGPRRSGAPRNNRKRPG
>YP3178 rho, transcription termination factor
MNLTELKNTPVSDLITLGENMGLENLARMRKQDIIFSILKQHAKSGEDIF
GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGK
IRPPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERG
NGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIATSIAYNHP
DCVLMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKA
KRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIA
EKRVFPAIDFNRSGTRKEELLTTTDELQKMWILRRILHPMGEIDAMEFLI
SKLATAKTNDQFFDNMRRS
>YP2323 rimI1, Acetyltransferases
MEIRTATPADFAEIWPLFQAVIRSGDTYVFTPETPEQDAYDYWFGRGVRC
WVAVHEQRIVGMYKLIDNQRGLGAHVANASFMVDQKVRGLGIGKALGLHC
IDQATTLGYRAIQFNFVVSTNTLAVALWQKLGFKIIATLPEAFNHRQLGY
VDAYVMHRVLVPTQS
>YP2034 rnb, exoribonuclease II
MFQDNPLLAQLKQQLHTQTPRVEGVVKGTEKGFGFLEVDGQKSYFIPPPQ
MKKVMHGDRIIATLHTDKDREIAEPETLVEPFLSRFVGRVQRKDDRLSIV
PDHPLLRDAIQCRPVRELTHSFQNGDWAVAEMCRHPLKGDRAFQADLTAF
ITNGEDHFVPWWVTLARHNLEREAPAMVESALNDAELEREDLTALNFVTI
DSASTEDMDDALFVQDNGDGSWLLTIAIADPTAYVVENSELDLTARKRAF
TNYLPGFNIPMLPRDLSDNLCSLRPNERRPVLVCRVTITEEGTLSNDIRF
SAAWVESKAKLVYDDVSDWLEGNNRWQPQDTAIAEQITLLKRICDARSNW
RQQHALVFKDRPDYRFLLGEKGEVLDIIVEHRRIANRIVEECMIAANVCA
ALALREHLGFGIYNVHTGFDPALVEQAASVLKANGVGADPQALLTLPGFC
ELRRHLDALPTQFLDSRIRRFQTFAEISTVPGPHFGLGLEAYATWTSPIR
KYGDMVNHRLLKAMITGQQAEKPQEEITVQLAERRRLNRMAERDVGDWLY
ARYLQPQAGTDTRFTAEIIDITRGGLRVRLLDNGAVAFIPAPFIHAVRDE
VVCSQETGTVQIKGETVYSQSDKIEVRIAEVRMETRNVIARPVA
>YP2522 rnc, ribonuclease III
MNPIVINRLQRKLGYTFQQQELLLQALTHRSASSKHNERLEFLGDSILSF
VIANELYRRFPRVDEGDMSRMRATLVRGNTLAEMAREFDLGECLRLGPGE
LKSGGFRRESILADTVEALIGGVFLDSDIHTIERLILEWYHSRLEEISPG
DKQKDPKTRLQEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLNEP
VIGTGSSRRKAEQAAAEQALKQLELE
>YP3849 rnk, regulator of nucleoside diphosphate kinase
MTKPTITINELDAERLDALLAQPAFAGSVVATALNEELDRAEILPPNEIP
ADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLG
LHVNDEISWKLPGGDETRITVLELLYQPESAGEYHR
>YP0536 rnr, ribonuclease R
MSQDPFLEREAEKYESPIPSREFILAHLAKRETPASREELANELNLTGEE
PLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLRGTVIGHRDGYGFLR
VEGSKDDLYLSAEQMKMAIHGDVVLAQVVGADRKGRREARIVRVLVPKTS
QIVGRYFTDAGTGFVVPDDSRLSFDILIPAEATCGARMGFVVVVELTQRP
TRRTKAVGKIVEVLGENMGTSMAVDIALRTHEIPHTWPPQVEKQVADLKE
QVPEEAKKGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPQTALDDEARSRGNSVYFPSQVIPMLPEVLSNGLCSLNPQVDR
LCMVCEMTISSQGKLSSYKFYEAVMSSHARLTYTKVWRIIDGEESLREQY
KPLVPHLEELHAMYKVLDQARAERGGIAFETEEAKFIFNAERRIERIEPT
VRNDAHKLIEECMILANIAAARFVEKHEEPALFRVHDRPSDDHIVALRSV
LNELGLTLGGGLKPQPKDYSVLMDEISDRPDHEMLQTMLLRSMKQAVYDP
ENRGHFGLALASYGHFTSPIRRYPDLAMHRAIKYQLAKEHGNLKDRWTPT
GGWHSDFEDMLQLGQHCSMTERRADEATRDVADWLKCDFMLDQVGNVFTG
IIASVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRYDNIGQRLIGESSGVV
YRLGDTVEIRVDAVHMDERKIDFALVSSTRKPRGEGKTARDKAKNNGQRT
LRSNSAGRGSSSGSSRRDGAPTAGGQKRPRRAKKPVNFEPDSAFRPDAAA
AKPDDKALAEKKAKAKAKRASAKTKKIAAATKAKRAKKKTTSDQ
>YP3727 rob, putative right origin-binding protein
MDQASIIRDLLSWLESHLDQPLALDNVAAKAGYSKWHLQRMFKDVTGNAI
GAYIRARRLSKAAVALRLTSRPILDIALQYRFDSQQTFTRAFKKQFAQTP
ALYRRAEDWHSSGICPPIRLGTYTLPQPEFITLPEQHLVGITQSYSCTLE
QISTHRAELRLHFWQQYLGDADQLPPVLYGLHHSRPNPEKDDEQEIFYTT
AIEPQHIPCNVPEGQPVILQGGEYVQFSYDGPLDGLQNFILTLYGTILPQ
LALIRRRGYDIERFYPQGRPKDGPPATLKCDYFIPIRR
>YP0674 rpiR1, putative rpiR-family transcriptional regulatory protein
MGKGMKQIDERLRGHYTQLTPQEQRVADFIFAHFDDLISYNSAELARLSG
VSKATVSRLFKRLGYGSYREMREEVRALRQSGMPLTDNRDAVQGNTLLAR
HYKQEMANLAHWVNQLDSQQLTDVIDAMAQAPRILLLGLRNSYPVALHLR
QQLLQVRQQVHVIPQAGQTLAEELVDITPHDLVIVVAFRRRPKAIREILL
HMQGQGVPTLLICEPQAQSLLSLARWRLTTPLDSVSAFDSYSAAMSLVNL
LSNALLHKILAEGRQRIHQIANLYDSLGELE
>YP0887 rpiR2, putative LacI-family regulatory protein
MFTYKEISTLNELELIVYNYIIKNTDKVMYMTIRELADASGVSTTTVLRF
CKKMNCDGYSEFRIRFKLYLEHDEKPPVTFGISEIISYFKSINNSEFDEL
LDNVAKQIAATRRVIFVGIGTSGALGKYSARFFSNVGKYSTYIDDPYYPI
NSDMYQDAVAIILSVSGETEEIIRIANQFSLQNCKIISLTNSESSTLAKM
ADLNISYHMPPVILEGQYNITTQIPVLYIIETIGKKLPQLMNKNTK
>YP1138 rpiR3, Transcriptional regulators
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAER
ADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMES
EAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVV
GLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSIS
FSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDA
FRSQSATLCLVQSLVVALAYQQEAQAGAALAHRQ
>YP1908 rpiR4, Transcriptional regulators
MKIRHRSYYGEKGLLLTLCHCQRVPARSIFSLNRHRFLLYMKSVKPMGGS
RYMNTLENIQNSMDLLSKSERKVAEVILASPQTAIHSSIATLAKMANVSE
PTVNRFCRRLETKGFPDFKLHLAQSLANGTPYVNRNVEEDDSVAAYTGKI
FESTMASLDRVKNNLDIAAINRAVDLLTQAKKISFFGLGSSAAVAHDAMN
KFFRFNIPVIYFDDIVMQRMSCMNSSEGDVVVLISHTGRTKSLVELAQLA
RENDAAVIAITSCDTPLANEATLSLLLDVPEDTDMYMPMVSRIAQLTLID
VLATGFTLRRGAKFRDNLKRVKEALKESRFDKDSLPVNNGD
>YP2641 rpiR5, putative rpiR-family transcriptional regulatory protein
MKTGAPRFKPGKILDALGAMQNSLTRSAQRIAAYILAQPAQVTQLSIADL
SALTQAGEATIIRFCRTLGYKGFQDFKMDLAIEVATRHNSENSLLDADVQ
EGDDTLAIGSKLQSAINNVLSETLNLLSIESVEQVVKVLRPADRICIFGV
GSSGITAEDAKGKLMRIGLRVDAATNNHFMYMQASLMNPGDVAIGISHSG
TSAETVQALKLAKEAGATTVALTHNMGSRITELADYVLINGNRQGQLQGD
SIGTKIAQLFVLDLIYALLVKADPAQAESIKRKTTQAVSQNG
>YP0232 rpoA, DNA-directed RNA polymerase alpha chain
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVIL
TLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASINMRIKVQRGR
GYVPASARIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK
LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD
PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIADE
>YP3110 rpoB, DNA-directed RNA polymerase beta chain
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLE
AAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKL
RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDR
RRKLPATIILRALNFTTAQILDLFFEKVVFEIRDNKLQMELVPERLRGET
ASFDIEANGKVYVEKARRITARHIRQLEKDGIDRIEVPVEYIAGKVVAKD
YVDASTGELICAANMELSLDLLAKLSQAGHKQIETLFTNDLDHGAYISET
LRVDPTSDRLSALVEIYRMMRPGEPPTREAAENLFENLFFSEDRYDLSAV
GRMKFNRSLLRDEIEGSGILSKEDITEVMKKLIDIRNGRGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISA
AVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDV
HPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRDGVVT
DEINYLSAIEEGNFVIAQANSNLDDEGRFLEDLVTCRSKGESSLFSREQV
DYMDVSTQQIVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV
GTGMERAVAVDSGVTSVAKRGGTVQYVDASRIVIKVNEDEMHPGEAGIDI
YNLTKYTRSNQNTCINQMPCVNLGEPIERGDVLADGPSTDLGELALGQNM
RVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEI
TADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEE
MQLKQAKKDLTEELQILEAGLFARIHAVLVSGGIEAEKLSKLPRERWLEL
GLTDEDKQNQLEQLAEQYDEMKSEFEKKMDAKRRKITQGDDLAPGVLKIV
KVYLAVKRQIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNP
LGVPSRMNIGQILETHLGMAAKGIGEKINAMLKKQEEVAKLREFIQKAYD
LGDNVCQKVDLSTFTDDEVLRLAENLKKGMPIATPVFDGATEKEIKELLQ
LGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG
RTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEEE
>YP3109 rpoC, DNA-directed RNA polymerase beta' chain
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK
PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE
RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGG
MTNLERRQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKNMDLEAECEI
LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM
VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII
VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKV
RITEEIRNTEGESITRTSIIDTTVGRAILWMIVPQGLPYSIVNQPLGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEAK
AGIIEEAETEVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDN
LSVEDVVNRDGVVEQQVSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKP
DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTEDDCGTHNGIVMTPVIEGGDVKEPLRDRVLGRVTAEEVIK
PGSADILVPRNTLLDEKWCDLLEENSVDSVKVRSVVSCETDFGVCANCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI
QVKNKGSLKLSNVKFVTNAAGKLVITSRNTELKLIDEFGRTKESYKVPYG
AVMAKGDGAEVQGGETVANWDPHIMPVVTEVSGFIRFADMVDGQTITRQT
DELTGLSSLVVLDSAERTGSGKDLRPALKIVDAKGNDVLIPGTDMPAQYF
LPGKAIVQLEDGIQIGAGDTLARIPQESSGTKDITGGLPRVADLFEARRP
KEPAILAEISGIISFGKETKGKRRLVISPLDGSDAYEEMIPKWRQLNVFE
GEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKIND
KHIEVIVRQMLRKGTIVDAGSTDFLEGEQAEMSRVKIANRKLAAEGKIEA
TFTRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN
VIVGRLIPAGTGYAYHQDRMRRKAQGEAPVVPQVSADEATANLAELLNAG
FGNNKG
>YP2958 rpoD, RNA polymerase sigma factor RpoD
MAVSPTDTNPNTLKCGYCLMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHL
PEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDLMLAENTTDTDDDAAEA
AAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGINQ
VQCSVAEYPEAITYLLEQYDRVEAGESRLSDLITGFVDPNAEEDIAPTAT
HVGSELSTEEMDDEDEDEDEDDDAEDDNSIDPELARQKFSDLREQYENAR
MEIKKNGRNHANAAAEILKLSEVFKQFRLVPKQFDYLVNNMRAMMDRVRT
QERIIMKLCVEQCKMPKKNFVTLFSSNETSDTWFNAAVAMGKPWSEKLKD
VSEDVQRSLQKLRQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEA
NLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYAT
WWIRQAITRSIADQARTIRIPVHMIETINKLNGISRQMLQEMGREPTPEE
LAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPL
DSATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDV
TRERIRQIEAKALRKLRHPSRSEVLRSFLDD
>YP2515 rpoE, RNA polymerase sigma E factor
MSEQLTDQMLVERVQKGDQQSFNLLVIRYQHKVASLVSRYVPQGDVPDVV
QESFIKAYRALESFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA
NDAENYENAGALKEISNPENLMLSEELRQIVFKTIESLPEDLRMAITLRE
LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIQR
>YP3238 rpoH, RNA polymerase sigma-32 factor
MTKEMQTLALVPQGSLEAYIRAANAYPMLTAEEERELAERLHYQGDLGAA
KQLILSHLRFVAHVARNYSGYGLPQADLIQEGNIGLMKAVRRFNPEVGVR
LVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN
QDEVELVAKELGVTSKDVREMESRMSAQDMTFDPSPDDEARDGQFMAPVL
YLQDKTSDFADGIEEDNWDSHAADKLSYALEGLDERSQHIIRARWLDDEN
KSTLQELADQYGVSAERVRQLEKNAMKKLRMAIEA
>YP3837 rpoN, RNA polymerase sigma-54 factor
MKQGLQLKFSQQLAMTPQLQQAIRLLQLSTLELQQEIQLALESNPLLEQT
DLHEEIDAKETVDSESLDTREALEQKDMPEELPLDATWDEIYTAGTPSGM
GNDYSDDELPVYQGETTQTLQDYLMWQVDLTPFTETDAAIATSIVDAVDD
TGYLTVPLEDILESMGDENVALDEVEAVLKRIQHFDPIGVAARNLRECLL
VQLSQYAKDTPYLAEARLIVSEYLDLLGNHDFRMMIRLSRLKEDTLKEAI
ALIQSLDPRPGQSINTGESEYVIPDVLVRKEKGIWTVELNADSIPRLKVN
QQYAAMGNSVRNDSDGQFIRSNLQEAKWLIKSLESRNETLLKVARCIVEQ
QVEFFEKGAEFMKPMVLADIAQAVDMHESTISRVTTQKFLHSPRGIFELK
YFFSSHVNTDSGGEASSTAIRALVKKLVAAENPAKPLSDSKLTTLLCEQG
IMVARRTVAKYRESLSIPPSNQRKQLV
>YP0332 rpoS, RNA polymerase sigma factor RpoS
MSQSTLKVNELHEDADFDENSTETEIFDEKALVDDEPTESELADDELLAQ
GVTQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVSSRRRMIESN
LRLVVKIARRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW
WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEI
AEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILSDENENGPED
TTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLT
RERVRQIQVEGLRRLREILQTQGLSIEALFRE
>YP0040 rpoZ, DNA-directed RNA polymerase, omega chain
MARVTVQDAVEKIGNRFDLVLVAARRARQIQSGGKDALVPEENDKVTVIA
LREIEEGLITNQILDVRERQEQQEQQAAEIQAVTAIAEGRR
>YP3100 rsd, regulator of sigma D
MESFMLNRLESLTQRVGGSNELIDQWLHARKELLVSYCTVIGIKPQKEKH
TPLNAKTLENFCHNLVDYLSSGHFHLYDRIIKEVEGASSPKMALTAKIHP
ALKNNTQTIMAFHDCYTNIEIDDDSCTEYQQALSDIGEALDARFRLEDQL
IQWAAESWQAAQLADADKKSQVN
>YP2093 rstA, two-component regulatory system, response regulator protein
MSLTARYSEPSYFYKQEDMSKIVFVEDDPEVGKLIAAYLGKHDIDVFVEP
RGDTAQAVIEQQQPDLVLLDIMLPGKDGMTLCRDLRPHYDGPIVLLTSLD
SDMNHILSLEMGANDYILKTTPPAVLLARLRLHLRQHNQRLRQQTPLQAK
ETISSPPTGYNAIHFGLLCIDPVNRQVNLDDEEISLSTSDFDLLWELATH
AGIIMAREALLKNLRGISYDGMDRSIDVAISRLRRKLYDNALDPFRIKTV
RNKGYLFAPNAWESKQ
>YP2912 sPS1, putative kinase protein
MANIVTCTTKDGETIQYVDEIIGSGSMKDVYFSPDKSYVVAFYKKPQNDQ
AKERIDMITGRYRQNIFEQSGGEYWKDLFCWPTHVVEHNGKIGIVVPTYQ
NQLFFKYGSKNNDFLGIKGREKEGKWFASANNQNKFLDPRERGNILNYLK
VCLLLTRAVRRMHAAGLCHSDLSYKNVLIDPEQGHACIIDVDGLVVPGKF
PPDVVGTPDFIAPEVVKTSHLLKEDPQRILPNITTDRHALSVLIYMYLFY
RHPLRGGKIHDMDDEVRDESLAMGERALFIEHPTDRSNAVKLNQVKPSSL
PWADPQKVPYTIMGPYLTQLFEKAFIDGLHDPSKRPTADEWETALVKTVD
LIQPCQNTACEQKWYVFSGKTKPVCPYCGTAFKGKLPILNLYSSRKAGSY
RPDDHRLMVWNGQSLYAWHVNRLIAPNERTSEAQKKRVGYFVFHNDQWWL
VNEGITGLMSLPDKKTIGIGEKLALTDGAQLVLSTEEGGRLVVVQLVAN
>YP1323 sSL2, putative DEAD box helicase family protein
MAFTLRPYQREAVDATVAYFRRHTTPALIVLPTGAGKSLVIAELAKLARG
RVLVLAHVKELVAQNHAKYCAYGLEADIFAAGLQQRQSEGKVVFGSVQSV
ARNLPLFDSAFSLLIIDECHRISDEDDSQYQQIIQHLRTGNPQLRLLGLT
ATPYRLGKGWIYQFHYHGITRGDEKALFRDCIYELPLRYMIKHGFLVPPE
RLDMPVVQYDFSRLTSNSDGLFREADLDRELKQQQRITPHIVSQIIEYAA
QRRGVMIFAATVEHAKEVYGLLPKGEAALVSAGTPPTERDALINAFKQQQ
LRYLVNVSVLTTGFDAPHVDLIAILRPTESISLYQQIVGRGLRLFPGKED
CLILDYAGNPHDLFTPEVGTSKPHSGSQPVQVFCPDCGFANIFWGKCTES
GEIIEHYGRRCQGWFEDDQGARAQCDYRFRFKSCPHCGAENDIAARRCHQ
CQAVLVDPDDMLKAALKLKDALVLRCGGMQLETGQDAKGEWLKATYYDED
GTNTSERFRLTTPAQRMAFEQIFLRPHQRAPGIALKWHTAADIIAQQALL
RYPDFVVARRRGQWWQIREKVFDYKGRFRRADALA
>YP2160 slyA, MarR-family transcriptional regulatory protein
MESTLGSDLARLVRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQI
QLAKAIGIEQPSLVRTLDQLEEKGLITRHTCANDRRAKRIKLTEQSSPII
EQVDGVICSTRKEILGGISSDEIAVLSGLIDKLEKNIIQLQTK
>YP0234 soxR1, MerR-family transcriptional regulator
MDNMLKIGQLAKLADVTPDTIRYYEKQGMMDHGERTDGGYRLYTDQDLQR
LRFIRYAKQLGFTLDTIAELLSIRIDPDHHTCQESKSIVDSRLSDVEGKI
RELERMRDSLKRLSEACCGTSHATTYCSILEALEQGATEELIKV
>YP2123 soxR2, putative regulatory protein
MYKIKKFSQITGISEFNLRYFDQIGLLPAERDNSRYRLYHPRQIAMAHLI
LSLQKAHVSNEKIKSILMDYSSQNSQSALCYAQHAIDETLHQLTCARHFL
TTQIERQMLINDAKRRLNNPFIEERNIEPLGIFSINTPNIIDFFKYVSEV
SGNPDWYLRHRYGFIVERESIQKNNYKLMNFFCNEPNIINKHGGDFPAGS
YFSGFYKGSLENNPAVSKHLSQADDNGMNHSSKVIIEHISGPATVKCKSE
FLIKVMYPCHHQLDGSHETPTVLTPSSTN
>YP0039 spoT, guanosine-3',5'-bisbis(diphosphate)3'-pyrophosph ydrolase
MYLFESLNLLIQRYLPEEQIKRLKQAYLVARDAHEGQTRSSGEPYITHPV
AVACILAEMRLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV
SKLDKLNFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL
RPDKRRRIARETLEIYSPLAHRLGIHHLKTELEELGFEALYPNRYRVIKE
VVKAARGNRKEMIQKILAEIEGRLTEAGIPCRVSGREKHLYSIYCKMHLK
EQRFHSIMDIYAFRVIVKEVDTCYRVLGQAHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSLIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEQGESGTT
AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL
PAGATPVDFAYVVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDESVSLGRRLLNHALGNGRKL
SDISEENIKHELDRMKLATVDDLLAEIGLGNAMSVVVAKNLLGDPSTLGT
SASGTRKLPIKGADGVLITFAKCCRPIPGDPIIAHISPGKGLVIHHESCR
NIRGYQKEPEKFMAVEWDQETEQEFIAEIKVDMFNQQGALANLTAAINAA
ESNIQSLNTEEKDGRVYSAFIRLTTRNRVHLANIMRKIRIMPDVVKVSRN
RN
>YP0973 srmB1, Superfamily II DNA and RNA helicases
MKLHLAISSGLGRSGASRNMSFDSLGLNADILRAVEEQGYLVPTPIQRQA
IPVVLEGRDLMASAQTGTGKTAGFTLPLLQLLSQDQQPIKGRRPVRALIL
TPTRELAAQIDENVQSYSKYLKLRSLVVFGGVSINPQMMKLRGGVDILVA
TPGRLLDLEHQNAVDLSKIEILVLDEADRMLDMGFIHDIRRVLAKLPAKR
QNLLFSATFSDEIKGLASKLLHNPASVEVARRNTASEQIAQSVHFVDKNR
KRELLSQMIGEGNWQQVLVFNRTKHGANHLAEQLNKDGITAAAIHGNKSQ
GARTRALADFKDGKIRVLVATDIAARGLDIDQLPHVVNYELPNVPEDYVH
RIGRTGRAERTGEAISLVCVDEHKLLRDIERLLKREIPRIALDGYEPDPS
IKADPIQNGRQGRGAQRPGMGRGSSAGRPQNGGGAAGRGDSRNSRPRSQA
DGQRRPAGPSSRGRSRNPGE
>YP2512 srmB2, ATP-dependent RNA helicase
MTVTNFSELDLDERLIDALRDKGYERPTAIQASAIPPAMDGRDVLGSAPT
GTGKTAAFLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADQARELA
KYTQLDIATITGGVAYMNHAEVFSENQDVVVATTGRLLQYIKEENFDCRA
VETLILDEADRMLDMGFAQDIETISAETRWRKQTLLFSATLEGEAIREFA
ERILNEPVELEADPSRRERKKIQQWYYRADDIKHKTALLCHLLKQPDVSK
SIIFVRTRERVHELVSWLREAGINAWFLEGEMVQAKRTEAVIRLGDGRVN
VLVATDIASRGLDIDDISHVFNFDMPRTADVYLHRIGRTGRAGRKGVAIS
LVEAHDHILLGKIGRYLNEPLKPRVIDELRPTSKAPSEKATGKPSKKVLA
KRKEQKESSKEKVKVKVRHRDAKNVGKRRTPKAKPDTKSAG
>YP1328 tfoX, Regulator of competence-specific genes
MRIFAISCSSYTYCYKTGTLVRIFTKGVVMKIMSEKRIAQAQVRFGFLGQ
ITIRSQFGGYGLLVNSIMFAVVSEGELYLRANDNIEDLFRASGMANLVYA
KRGLPVLLRYYRVDTSLWNDGLRLHHFVRQAYEGAKIDVLSKKGPVVRLK
DLPNLSASLERLLWKVGIKNATELRLEGAKCCYLKLRALRRSLGINILLA
LAGAISGYHYAALPLMMRSELIEWFEKHIHPAKAPLYETA
>YP3846 treR, trehalose operon repressor
MQNRLTIKDIARMSGVGKSTVSRVLNNEGSVSPQTRERVEAVIRQHGFTP
SKSARAMRGQSDKVVGIIVSRLDSPSENQAVRTMLPLFYQQGYDPILMES
QFDTTLVSEHLHILQQRHVDGVILFGFSGLTAEMLAPWQEKMVVLAREYR
GFSSVCYDDEGAIYLLMDKLRQAGHRHISYIGVQSSDATTGMRRYQAYLD
YSQQHGLTPMVALGELSYQSGFQLAPQVITPQTSALVCASDTIAMGVSKY
LQQQEREQPPIQVCGIGNTPLLHFLFPDTLTIELGYGRAGVKAAQQLLDQ
LSNSQPIQQIIIPGQLV
>YP3730 trpR, putative Trp operon repressor
MVIMTKQFLTDEKQVSDSLNRQTAGNPYSAADPALSAEDNQHWLSFVALL
QNAITQDLHLPLLQLMLTPDERTALGTRVRIIEELMRGELSQRELKSQLG
AGIATITRGSNSLKTAPPQLKSWLEAQLLANKR
>YP0047 ttk, TetR-family regulatory protein
MAEKENTKRNRREEILQALAQMLESSDGSQRITTAKLAANVGVSEAALYR
HFPSKTRMFDSLIEFIEDSLMSRINLILQDEKETFNRLRLILLLVLGFAE
RNPGLTRIMTGHALMFEQDRLQGRINQLFERIEMQLRQVLREKKLRDGQG
FIHDEALLATQLLAFCEGMLSRFVRSEFRYCPTQEFDSRWPLIVAQLQ
>YP2131 tyrR, transcriptional regulatory protein
MLTDCFISKRGQGIIIASDSAPVIYIRSILMRLEVFCEDRLGLTRELLDL
LVLRSIDLRGIEIDPIGRIYLNFSSLDFSIFSALMMEIRHIDGVTDVRTV
SFMPSEREHRSLRALLESMPEPVFSIDLKGNLELSNPAARALFSLSEEKI
RHKTAGSLLGGYNFSRWFEGGDTAPHTERVLINNQDYLMEITPINLEDEN
QKKQTVGAVVMLKSTARMGQQLQTLSVNDDTEFRQIVTASTKMRQVLAQA
RKLAMLDAPLLLVGDTGTGKDLLARACHLRSPRGKMPFLGLNCASLPDEV
VESELFGYAAGAYPNAIEGKKGFFEQANGGSVLLDEIGEMSPRMQIKLLR
FLNDGTFRRVGEEHEVHVDVRVICATQKNLVELVQRGEFREDLYYRLNVL
TITLPPLRERQTDIMPLTELFVARFSDEQGVPRPKLSPELASFLTHYGWP
GNVRQLKNAIYRALTQLEGAELRPQDIILPEFEIEATLGDEVLDGSLDDI
SKRFERSVLTRLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSSKRPASD
ENEEE
>YP1464 uhpA1, putative GerR-family transcriptional regulatory protein
MINVALIDDHIVVRSGFAQLLSLEEDIRIIGEYGCAAEAWENLPKTDVHV
AVIDISMPDESGLSLLKRLRQQIPHFRAIILSIYDTTAFVQSAMDAGASG
YLTKRCDPAALVQALRTVNGGGLYLCTDALRALRQMPQQPSKLTILTPRE
KEIFQLLVKGISVKALAEQLSLSHKTVHVHRANILSKLNCETTIELVHFA
LQHQLLAGN
>YP3371 uhpA2, response regulator
MVGLMLKITGARPLIAILHPQFSRNWPGLPKSGPIFDVPPHCCFTAKVYF
QIRSPSRWSHTMTYRVVFIDDHDIVRSGFAQLLSLEEDIQVVGEFSSAKQ
ARAGLPGLQANICICDISMPDENGLDLLKGLPSGMGVIMLSMHDSPALVE
TALERGARGFLSKRCKPEDLISAVRTVGSGGVYLMPEIAQQLARVAVDPL
TRREREIAVLLAEGMEVREIAESLGLSPKTVHVHRANLFAKLGISNNVEL
AKKVLNL
>YP2471 ureG, urease accessory protein
MTDKSTARKKITRIGIGGPVGSGKTAIIEVITPILIKRGIKPLIITNDIV
TTEDAKQVKRTLKGILDEEKILGVETGACPHTAVREDPSMNIAAVEEMEE
RFPESDLIMIESGGDNLTLTFSPALADFYIYVIDVAEGEKIPRKNGPGLV
QADILVINKIDLAPYVGASLDVMESDTKVVRGNRPYILTNCKTGQGIEEL
VDMIMRDFLFTHVQPEGEQA
>YP1528 uvrY, response regulator protein
MISVLLVDDHELVRAGIRRILDDIKGIKVAGEMQCGEDAVKWCRSHVVDI
VLMDMNMPGIGGLEATRKILRFSPDTKVIMLTIHTENPLPAKVMQAGAGG
YLSKGAAPQDVITAIRMVHAGQRYIASDIAQQMALSQLEPPAETPFSCLS
ERELQIMIMITKGQKVNEISEQLHLSPKTVNSYRYRMFSKLNISGDVELT
HLAIRHGLFNAETLSNSD
>YP1310 uxuR, putative transcriptional regulatory protein
MQEIKVMRLYQEVGSQLREAIVSGRYSVGDRLPPERDIAENFSVSRSVVR
EALIMLELEKLVEVRKGSGVYVVNVPTMSLNGESATSIDSGYGPFELLQA
RQLLESEVAAFAAMQATKADIIKMRNAIEQGKAALTAGAIDESADELFHC
LLAQSTQNSVLANMVAQTWQVRKSSAMWQGAHSHTADFSYRWQWLDDHQK
ILQAVLRRDSKAAKQAMWQHLENVKLKLLEISDADHPDFDGYLFESAPYQ
IEE
>YP0033 wecD1, conserved membrane protein
MAHHQMVVDEQGKAVAIGRLYINADNEAAIRFLAVAPSVRNKGLGTLVAM
TLESVARQEGVKRVVCSAREDAVDFFAKLGFVCQGEITAPQTTPVRHFLM
IKPVATMDDILHRPDWCGQLQQAWYDHIPLSEKMGVRISQYTGQRFVTTM
PEAGNQNPHHTLFAGSLFSLATLTGWGLIWLLLRERHLGGTIILADAHIR
YSAPVTGRPRAVAELSSLSGDLDRLARGRRARVQLNVNLFGDENQGAVFE
GTYMVLPVAAGDDMAN
>YP0640 wecD2, putative acetyltransferase
MTTTTPIRLLVRPITAGDNLAIANVIREVSAEFGLTADKGYTVSDPNLDH
LYELYSQPRSAYWVIEVDGHIAGGGGVAPLLGGEADLCELQKMYFLPILR
GKGLAKQLALQALAFARQQGFGRCYLETTASLTSAVGLYERLGFEHIGGA
MGNTGHVDCEVTMLKTL
>YP3291 wecD3, putative acetyltransferase
MKIVLLNAATFPIYRSGLASLLIDAVTYGASVGYNTHTLSQEEAEGYFHS
LRPAIEREALLLWIARDEIGIIGTIQLVLCQKPNGLNRAEIQKLLVHSRS
RRTGIGHKLIIAAENTAVQLRRGLIYLDTQSGSSAESFYRAQGYRYVGEI
PDYACTPNGNYHPTAIYFKRLFTVVQPHTAIQN
>YP3985 wecD4, putative acetyltransferase
MIRVYQPDDLNALMQLWLTSTIDAHPFVAEQYWYESAPLIRETYLPAART
WVYQQPGAAAEENTIIGFISILEEQLVGALFVAQAFHGHGVAKALMDHVQ
QRYPALSLEVYQQNRRAYRFYRKQGFTVIGRAYHAETQGTILTMHWQHPA
H
>YP1655 ybtA, transcriptional regulator YbtA
MTESPQTQSEISIHQLVVGKPANDGNIPAQCELLRCSLQEGMDILLWRGH
FARPETLQLHDDLGRINFSCILEGTSRFAIQGLRRHTDWELARNRHYITH
TPDCRGSASYCGRFESITLSFSPETLALWVPDISAVIKNKIDSHCCCQQQ
RCNAETHLTAQALRHALMRMHGGFSHEQKPSTLWLQGQSLVMLSLVLDEH
REDASCLSCHFNPMERQKLLRAKDLLLADLTQAPGVAELARESGLSVLKI
KRGFRVLFNNSVYGLFQAERMQEARRRLANGNTSVMTVAADLGYANASHF
SAAFQKQFGVTPSTFKRVM
>YP2276 ypeR, quorum-sensing transcriptional activator YpeR
MIINFFDNESINEDIKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNY
PLDWVKKYKKNSYHLIDPVILTAKGKVAPFAWDDNSVINIKSTDSAVFNL
AREYNIVNGYTFVLHDNNNNMATLNVSSGDDDSIFFDESIEVNKEKIQML
LIFIHDKMLGLYNKSHHENNTLNKKENKREIFSPRENEILYWASVGKTYS
EIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLIKPI
>YP3454 yspR, quorum-sensing transcriptional regulator
MHSVFNRSNEVIETLRDYIDRKLTIYDSPKYTYMVINKKNPGDIFIVTSY
PNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDENITVLSELKLSKIFTL
SKKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDRDRLQML
LIETHEKMLTLSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQ
EIAIITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEIIKPILA