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Gene list

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COG category: Transcription
Gene type: CDS
Genomic element: chromosome 2

Number of genes found: 23

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# Photobacterium profundum, ss9

>PBPRB0384 hypothetical protein
MKVNELKDIYRHKNVSGINYLLNLICLKHNALKHCLGKKEIIMTSQTGII
RSFNSADNNGLITCDLGGDIRFDASSVNGGLPVSGSLVEFIMDDSSNKLQ
AIKIRLI
>PBPRB0564 hypothetical protein
MRSVNLLETQIKTLNQLKEFYIAYSRVPKPMEFSRFVSISRKTIYVHFEV
FVDMGVLIEVSDGYEWSKIPYEVKLVERKQAQPKSGLIWANGR
>PBPRB0492 hypothetical protein
MRPSSMKKRQRYLDVATELFLEQGYEATGLDQLIERCGGSKLTLYSYFGD
KRGLLKAVVHEVTEQLGEVLKFEATEEEELKNQLVMFACNYMKFIYAPKM
LKLSRLVLANNQQEPELVSYFLERGAHHSQSTVLAFLEQQDRLGRLQIDD
AFLACEQLLGALKGNRHIEALYTDRVMNEQEMTRYAEHAINAFLRSYQ
>PBPRB0338 hypothetical protein
MKSNVWIKAGIVIIYGSSIDASPHRHHAIQLAWPRNGCSCKLDNNEISTP
VIIDSNVEHQLQVDEGWILLVEPTSELGVELSKKLAGQPSKVFKVPLPTI
KHTEDIDDLTVLLSPLFESLALSNQFPLINESQIADHRIKKLLHELNQCL
DGKCLKPSNWRASDVAQKLALSESRFLHLFSKELGIPWRPYLLWCRMICA
VRAILNGESATDAAHMAGFSDSAHLSRTFRKTFGMTIRQANAIFQKS
>PBPRB0459 hypothetical transcriptional regulator
MLDKMAFFVYVVRTGSISAAARKFNISVSAGSRWLQDLEQKFGMPLHRRS
NRLLTPTPAGQKLFDDFSPMLDNSEHLCRQMQEFQQHDKGHIDIVCTPVY
AYHYLMDMISEYLITNPDVTFNLNITPWALDHAAESDLTISANASYQGYR
EHDLHLVRREIMQSPFRVVTSQHYLDRQPAPQKPSDLTQHQCLFATTLTG
SNDWIFTQNGESQIIKVPKSLEVNDSDLLLQGVTKGAGIAYLPAFLVEPE
IESGHLISLLDDFDTSVWSLNLYYQPPATASAVAIHFKQFLLKQ
>PBPRB0342 hypothetical protein
MTASPEELFSFCATGSFPWDKKQIEETAKARKNLTVCIIAGQVVAFSNLY
NVVPGESAFIGNVIVGEDFKGQGIGKGLIKHMIEVCRETYDAVPHLSVFN
FNTRALLMYSKLGFEPYSVAKHISPQGENVALIHMRLTQRI
>PBPRB0426 putative exoribonuclease II
MTQTFAKYTFHNLGFSAPNTYSVWVNILRPSIMFQDNPLLAQLKKQIQET
LPKKEGNVKATDRGFGFLETDNKESFFIPPNYMKNVMHGDRVIAVIRTEK
EREVAEPQELIEQNLTRFIGRVKMIHNRLNVVPDHPQLKDAIKARAFKGL
NPEELREGDWVVANLNSHPLTNANKPFTCVINEKITDSNDKIAPWWVTLA
RYELPNAEPAPQDSWNMLDEGLERQDLTDIPFITIDGESTKDMDDAIHTV
KKDDGNFEITIAIADPTSYISVGDKMDDEARKRGFTVYLPGRNIPMLPRE
LSDELCSLIENEKRPVICCRVTVDSEGDIQDDITFFAAWIKSQARLAYDN
VSDLIEKGQSEKLMANDVIAEQIDALHQFANVRSKWRSNNAVVFPDRPDY
RFELSDDNDVIAIHTDPRRTSNRMIEEAMITANICAGRVLRDKFGTGVFN
IHNGFHPEKLDTAMEFLQKVEAPFEKEELKTLEGFSALRRWLNTLDSTYL
DNRLRKFQAYSEVGNQPAPHYAMGLDAYATWTSPIRKYGDMINHRLLKAV
ITGNEPSQKPDDTVGEEIALHRRTHRMAERGVADWLYIRLLKNAVKEETV
FTAEIFDINRAGIRIRLLEIGASAFIPGSLIVDNKQRIVCSGDLGTVSID
TVQEYQLGDTFEVKLAEIRTATRQLVAKPVQQFPAPEVDSDAAEKEEEKA
>PBPRB0322 hypothetical protein
MTMFIPDISNRTGPKFMALADALTEAIESNELAINMKLPPQRILSYRLGV
TVGTVTRAYQELELRGLIEPKVGSGTYVKDRQSEQQTFYHPVTSQEGIDL
AICRPLLLSQQQHLSTILQDLSHEPTAQKAVLDYYSAEGLHGHNKTLQQW
LSDRLNVDIDNRRLIWTYGGQHSLAIILQSLSRPKETILVEGLCYAEFIN
ACQQAERKLVPVQLDDDGIIPEDLELHCKRHKPRLLYLTPAIQNPTGTQI
NDSRRLKIIEICRRYNVLIIEDDVLYCPPSHRKTPLVAIAPDITIYVGSF
SKYFAGGLRVGYLIMPLTLKDTLQRTLRANCMHISPLMIDLVCRWLTNGA
MEAVDKEIALELSARHRLFNQYFPPQNNAVIPGFNCWIPLPEPLTGYSFS
KLLRNKGIHVREAEMFAVGRYPVPAAIRISLTGPASRSQLKTGLIIIKEQ
IALVKQR
>PBPRB0467 ATU4514, Putative transcriptional regulator
MEAENTLLEVPNDLDTLRDLIVKRYDKLSQRLQQVADYIMAQPMLVAVET
MATIAEQANVPLSTLSRFANTMGFSGFSQMQALFRDQYLNRPRDYKERVR
QARDQDCFEPESPTSIFQDYGAANIEAMEQLQVSVSPQKLERAVSLLDKA
DTIYIQGMRRAYPVAFYLWYALMKSDNNVVLLDDHGGMLAPMTRRISDKD
VLVTITFTPYAPETSELIKLASEKNVPIIAITDNQMNSQGSKMDVCFEVQ
EGEVMGFRSLSSSMYLAQTLAVSLMCRETK
>PBPRB0471 ATU4514, hypothetical transcriptional regulator
MSAATTLSELEEQIRNRYNELSKRLQQVAAYVLESHNSIAFDTVAVIAEQ
AQVPPSTLIRFANAFDFKGFNEMKQLFRQNLVEETTSYTDRARLFKELDD
ASPPPENPIDILQEFARANSQAMEQLATQTSADKLNQAVELIANADNIYL
IGLRRSFSIASYLTYALRHLERRAFLIDGLGGMFQEQLSMVGPKDIVISI
SFSPYAEETVKLSEIVSKAGAKQVVITDSQLSPLAAFSDVCFVVKEAKVD
AFRSQSASFCLAQTLAVSLAFKTENDQ
>PBPRB0529 ECS4290, hypothetical acetyltransferase
MEVIIRHLESKDIEQVKNLYAGKNAYSGTLQLPLPSLDAWNRRLSDLPAG
VHSLVAEKEGVIVGQLGFEVCQNARRRHVASFGMAVHDDYQKQGIGSQLL
SEIIDLAENWLNVQRIELTVYTDNHSAIALYEKHGFVIEGESVNYAFRNG
CYVNVYQMARVKK
>PBPRB0427 PLU4523, putative ATP-dependent RNA helicase
MLESVTEFRQLDLADTLLSALDSMGFVSPTPIQAASIPLLLTGVDALGKA
QTGTGKTAAFSLPVLNKVDLSQHKPQAIVMAPTRELAIQVAAEIKVLGQN
IKGLKVLEIYGGASIVDQMRALKNGAHIVVGTPGRVKDLISRDRLHLDEV
STFVLDEADEMLKMGFVDDVTWIMEQAPASAQRVLFSATMPPIVKQIVDR
FLRNPERIDVAGENRTVSQVSQQFWIVKGVEKDEAMIRMLETEENIDASI
VFVRTRQDTERLADWLSARGCKAAALHGDIPQSLRERTVDHIKRGVIDVL
VATDVVARGLDIQRITHVFNYDIPFDVESYIHRIGRTGRAGRSGKAILLV
RTNQIRMLRTIERVTKSRMEEIQLPNRDAVAAARLTRLGQELESQKEQAT
LEAFVELVGKLQETIDVDATTLAAMLLQRQQGNRPLFYKGPDPMIAAIDR
EQQRRERRGNDDRGTRNERGGERRSNNSADWDTYQLQVGREQGIQVKDIV
GAIANELGLSKEFIGAIKLAPSHTFVQLPKKMSAEVSAQLKKLRIRQNDV
KAVVVEGEVLREHRPRNSGSRDGGRGGYRGNRDSNGGERRFDRNRGSDNR
GGNRGSANSDRPRRPSGERSNNA
>PBPRB0518 RS05428, hypothetical transcriptional regulator
MKMVRQITVNLITTHLSFYLDGGEKTHRLYNRAKLLYGAPDKLCLMPAEH
QSEWRFSSRFKFLHLYFGHNHLQSTFEKAFDKEGRNIELMDQTFVDDSYL
SNIIHHTLLPLNWHDRSDALAFTHIQQIVYVHLLKNHCNVQFNIPNITGG
LSPIVAKRINEYIHDHLDSKITIEQLANIAELSEFHFSRMFHQSFGSPPH
QYVLKLRTQLAAMLLKTTQHPLADIAIQCGFSSQPHFTLHFKTFFSITPA
KYRQLQR
>PBPRB0310 RSC3129, hypothetical sigma-54 dependent transcriptional regulator
MDSLPHTQQEDWLSQSWHRSQQAGLDERHQPEHVRLDKTQLEQRQHIANV
LIKTVEQLAVPLFNQMFAGTNSRLLLTDTEGVIIGSWGQSRFEHQLTGIA
LESGVCWQENLKGTNAIGTALAEKRFVAVIGDQHFIRKHRFISCSASPIC
TPDGELQGVLDITSEQQIHSQQTQLLIQNMVQGIENSLLCQVPEGEYRVD
LAFDKHLLNSGWQGIVIANKSGHIVAHNAVAARLLSESLLEPTILGCNID
HIIQAAQSSLISTQTVNTQSNDLVFRCQSIQPISNPRSGIYSPSCPLHMG
DDVIEQAWQQACKLINKDVTLLILGETGVGKGEFIKQLHQYSSRNQHPLV
AVNCGALPQDLIESELFGYAPGAFTGASKEGYQGKVRQAHKGVLFLDEIA
DMPLSAQCRLLHVLQEKEVVPVGSNEAYKVDIQIVAATHKNLAQLVEVGE
FRQDLYYRLNGLIITLPPLRERQDKAELIVHIHAKHAENNQSICSHLTRL
LTEYSWPGNIRELDNTLRVASLLSDDAAQLTIEHFPNNIVTQLVSNTHQS
LSKTAVTKDLKSTVDDALLETYHANQGNISKTSRMLNISRNTLYRKLKKL
GIM
>PBPRB0512 SO3743, putative transcriptional regulator LuxT
MPKRSKEDTEITIQTIMDAVVDQILRLGYDKMSYTTLSKQTGISRTGISH
HFPKKQDFANALDGRIFRLFVERLNLENGLDAFVASWVEALDDEKFSAIL
RLLFHHIVSAENSSEFALRGIERLYAMCKERYGDDSIKELEWLLGKSLIS
LAR
>PBPRB0557 TM1330, hypotethical transcriptional regulator
MFPLVSLNFEVLIMINKALKIIRQFHNVKQVELAQKLNLSKSYLSEIESG
KKPVNLELLDKYSNLFDIPVSSLVFFSETIGKEGKNAQKFRYAFADKILN
IMEWMAIKNESKKV
>PBPRB0378 UHPA, putative transcriptional regulator UhpA
MMITVALVDDHLMVRSGFAQLLNVESDIEVKGEYGRASEAFAALSVSNID
VAVIDISMPDESGLILLEKLRAKHPNFRAIILSIYDSASFVSKAIEAGAC
GYLSKRCGPVELVTAIRTVANGDRYLCADALFNLSNAPITPKALDALTKR
EYEVFTHLIQGKDVKEAGIILSISYKTIHVHRANILSKLGLSNNVDLIRF
ALQHKLLAE
>PBPRB0351 VCA0689, conserved hypothetical protein
MYTEMFKSFSEQTEKTLAPYAKFNKLFSKNVEELTELQLTAVRTYSELGL
SQLKAVGEVKDMQSLAEFNGQQLETLTKLSQQLMEDSKKFSSVAQTFKTE
VEELVAENVKEVTPA
>PBPRB0440 VP0514, hypothetical sigma-54 dependent transcriptional regulator
MISMVTQSKNKSINGRLVAIGCNYEPWIALLEQSGWKTHCCYDLRTADAI
LEEYSPCICIVDLSNNDFSLNSISLRANKTKQVRWIALIKKEQLETDVIC
QFINNYCVDYFSMPIPSTLLLDTVGHQLGMLEIEARTWVEVTSQHDMGLY
GDSKSVKQLRDMVRRVASTEVNVFLTGENGTGKELIAKSIHNLSKRKNAP
FINVNCGSLTSDEEKIAFLNSATKLHDDEKPKFNGTILLDNVEELSKELQ
DELLRYLQAPAGESINEDVNCDIRIVVSSSADLETAVANGEFSKELYYRL
NVFHIKVPTLRERGSDIYLLAEKFLGQFSNEYNTLASSFSEDSKQLLLRY
SWPGNVRELMNQVKRAALLAEGSEVKAEHFDLPSKSNLKQSLRNIKDEAE
KDVLVAVLETHRGQVASAAKDLGVSRATMYRLLNKHNIVPDVRYYNNGQM
GE
>PBPRB0449 VPA1299, hypothetical transcriptional regulator, TetR family
MSVKEKKRGRPSGTSGQLSADKIIVAAKFLVKDDGKIPSIRKLAGSLDVD
AMAIYHYFANKNALLEAVTVSLIEAIYEPKGSEAWQTELMALCNSYLSLL
QAHPGLLQTFLGMTSTGPANVFVDRFYMAITPLNLTLEQVKDALDLLVDY
LHGFALSLECGGAASGLTIVHAEGPLRFYIRALEQHSV
>PBPRB0409 VVA0761, putative transcriptional regulator
MRLVVKLFIDRIPRLMDKSYKQFLVVAELSNISLAANHLGISQPTLTNNM
KKLEASFGVPLFIRKSKGVELTEYGVLLQEQALELQRRHDSLLHKMADLI
ERKTEKIKMGTGDAWWEIFVKQALQQYSASNPSISIQLEFGNHLKLMDML
IHGQIDLFVGHEIVGLSHRCNVTFIPLLQDKEAMFVHQNHPLLVNHREED
MALYPLLQVTPDSEAYLHLIENPQPKQLERDRQKVSERIVYEINSLTASI
DMLASTTAIMPYPMSMTDYFAQVNIVPLPLKKEGQKGTVGIYHLNELLVD
HVADIKQQLILNGHYQA
>PBPRB0327 Z0841, putative transcriptional regulatory protein KdpE
MEGNILSCKVLIVDDEPQIHKFIRISLVAEGFEYLGATSIQSALDLIERE
QPHLIVLDLGLPDGDGIELLTTVRTKSKTPILILTARDEEDEKIHLLEAG
ANDYLSKPFGIRELIVRIKVLVRDLVDVAQTPDILTSGNLTLQLSTNQLW
LGNQEIALTKKEFSFLSILVQNAGKLVKQENLLEEIWGKTHTHDKHYLRI
LVSQLRKKLNDSADIQCVIKTESGLGYRFVVDLEN
>PBPRB0361 Z5025, putative mannitol operon repressor
MAQSDQESDILERLSDTSNVRGFIITSVEVFEEAVDSLIQRIFRKDDFAV
KSVVGPLLDNSGPLGEITVRLKLLLGLGVVSHNIYQDIDAFLKLRDFLNS
DGSDYCFTDPKILQPIKKMHAVQNMGVVQLEIASPSDDVDLIFYQMQLAR
QEQIIKSALALAIAGICNELGRDSPF