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# Photobacterium profundum, ss9

>PBPRA3542 putative ATP-dependent RNA helicase, DEAD boxfamily
MKTTHITEQKFADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIA
GQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQI
YNDAAPLLASTGLKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYK
QRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKARLNMLFSAT
LSYRVKELAFEHMNSPESVVVEPNQKTGHLIQEELFYPSNQEKMRLLQTL
IEEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILE
QFTQGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRA
GESGSSISFACEEYAINLPAIETYIEHPIPLSKYNSEALLDELPAPLRLQ
RTPRQGGNRRPNGNRQGQGQSRPRNNNRRHPQSQKQQ
>PBPRA3431 putative RNA polymerase, beta prime subunit
MLLRYEYEGASRLAPLWVNSSQEPNVKDLLKFLKAQHKTEEFDAIKIGLA
SPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY
KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPSRIG
LLMDMPLRDIERVLYFESYVVIEPGMTNLERSQLLSEEQYLDALEEWGDE
FDAKMGAEAVKALLGNMDLNAEIDLMREELEETNSETKRKKLTKRLKLVE
AFLLSGNNPEWMILSVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
NNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLK
SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE
LFKPFIYGKLEARGLATTIKAAKKMVEREEAVVWDILDEVIREHPVMLNR
APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGM
YLAGPAEAEKAYLTKNAVLHARVKVRITQYAYDEQGNLSSETGLIDTTVG
RAILWQIVPKGLPYSLVNTEALGKKQISTLLNTCYRKLGMKETVVFADQI
MYTGFAYAALSGVSVGIDDMLIPKEKYTKIAEAEAEVAEIQEQFQSGLVT
AGERYNKVIDIWATANEQVAKAMMDNLSVETVINRDGEEEQQKSFNSVYM
MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVAQDVVITADDCGTHAGITMTP
LIEGGDVKEQLGDRVLGRVVADDVLKPGTDEVLAPRNTLLDEKWCDLLED
NSVDQVKVRSVVTCENDFGCCKFCYGRDLARGHLINTGEAVGVVAAQSIG
EPGTQLTMRTFHIGGAASRAAAENNIQVKSTGSMRLHNAKFVTNSESKLV
ITSRASVMTVIDEFGRTKESYKLPYGSILSKGDGDSVVQGDTVANWDPHT
MPIITEVAGRVQFVDFIDGVTVSRQTDELTGLSSIVILDAAERTSAGKDM
RPTVKLVDDKGNDVMIPGTDMPAQYFLPGKAIVQLEDSALVGIGDILSRI
PQESGGTRDITGGLPRVADLFEARKPKEPAILAEITGAVSFGKETKGKRR
LIITPSEGQPYEEMIHKWRQLNVFEGEKVECGDVIADGPEAPHDILRLRG
VHAVAEYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKVTIVKAGDSEFL
PGEQVEFSRVNIANRKLEADGKDIVTFSRDLLGITKASLATESFISAASF
QETTRVLTEAAVSGKRDPLRGLKENVIVGRLIPAGTGFSYHQRRQNQRNA
ELEPVAPQVDAEQASQDLAALLNAGLSDD
>PBPRA3432 putative DNA-directed RNA polymerase, beta subunit
MVYSYTEKKRIRKDFGKRPRVLDAPYLLSIQLDSFKKFIEQDPEGHYGLE
AAFRSVFPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKL
RLVMYDKDAPAGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNVFVRIDR
RRKLAASVILRALDYTTEQILDMFFDKVSFEVQGKSLVMELVPERLRGET
ASFDIEANGKVYVEQGRRITARHIRQLGKDGVDQIEVPVEYIVGKISSRD
YVNEETGELIAAANQELNLEILALLSQAGHKSIEVLFTNDLDYGPYMSET
LRVDSTTDRLSALVEIYRMMRPGEPPTREAAEQLFNSLFFSEDRYDLSAV
GRMKFNSSLLREETTGSGILDHSDIIEVMKKLIEIRNGRGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDAIMPQDLINAKPISA
AVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDV
HATHYGRLCPIETPEGPNIGLINSLSVYARCNSYGFLETPYRKVVDSKVT
DQIDYLSAIEEGQYVIAQANAALETDGSFSDELITARQKGDSGLHPRDHV
QYMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV
GTGIERSVAVDSGVTAVAKRGGQVQSVDASRIVVKVNEDELVPGEAGIDI
YNLTKYTRSNQNTCINQRPTVMPGEPVARGDVLADGPSTDLGELALGQNI
RIAFMPWNGYNFEDSILVSERVVQQDRLTTIHIQELSCVARDTKLGSEEI
TADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEE
MQLKEAKKDITEEFQILEGGLLARVRTLLLSIGYSEEKIASMDRERLFAL
TLDDESLQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIV
KVYLAVKRRIQPGDKMAGRHGNKGVISKICPVEDMPYDEKGQTVEIVLNP
LGVPSRMNIGQILETHMGLAAKGIGDKLNEMLKQQQELHKFRNFLQKVYD
LGDTRQDVDIAALSDDQVHTLVQNLRDGLPIATPVFDGAPESSIKELLKL
GDLPESGQLKMFDGRTGDMFERPVTVGYMYMLKLNHLVDDKMHARSTGSY
SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTVKSDDVNGR
TKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDK
>PBPRA3411 FIS, putative factor-for-inversion stimulation protein
MFEQNLTSEALTVTTVTSQDQITQKPLRDSVKASLKNYLAQLNGQEVDDL
YELVLAEVEQPLLDTIMQYTRGNQTRAATMMGINRGTLRKKLKKYGMN
>PBPRA3444 PA4279, hypothetical protein
MQLLIEAGNTYVKVAQLFESGKFELLGRYPRRKLEMVLEPLLEKGIHRIV
FASVGPVEVDNSIQRIAQLANIPVMQVKTLRKDFGVKNAYSEYQYLGVDR
WLTLVAIRQKFKKPTVIIDIGTALTFDVLAEDGKHLGGWIAPGYQLMMQS
VLENTCKVFSDREHGECITFSDNTADGLKNGCRAALIGLSNTV
>PBPRA3597 PAB7155, Hypothetical transcriptional regulator
MENVKSRTATKIREARERKDITQVAMAKALGLARQTYLDLESGKTEPRIS
TLVSIADITGRPLIWFIYEDEGLISSEDKNDIQVLLDLFAQVPRSMRSKL
IEHNMSFVSCWIDYVASVKRK
>PBPRA3598 PYRAB062, Hypothetical transcriptional regulator
MTDSKAKIAARIKEAREWKGLTQVHMAQQLQVARQTYLDLETGKTEPKVR
LLSEISEITERPLTWFVYGDEGIEILESEYKEEIDRLLQYFSRLPHSARN
IILQQSINLAGFMAEYTKALTNKRK
>PBPRA3510 RSP1115, hypothetical transcriptional regulator, AraC/XylS family
MIDAHYQSFSFKRHYHLDYHLGLITQGQQQYFFNGAKHVAGPGQMVIMPP
DEIHDGQPKESAGYRVKVFSISPDWLTQQAEAVSGKDLFCFPQHKIADHQ
FFQQLTQLHTQLDNPLASQLAKDSLPIEYFSYLLTHYGKVQEHTVTKLGT
KDLRQLRDYFMAHLDQKISLNDLATLCDLSPSQLLRQFKKTTGITPYAWL
ARLRLEHAMALLRAGFNSTEVAYHVGFYDQAHFANTFKQTFGIAPSHIK
>PBPRA3437 SO0219, putative transcription antiterminator protein
MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKMHSMEDYFDEVLVPTEEVV
EMRAGQRRKSERKFFPGYVLVQMVMNDQTWHLVRSIPRVMGFIGGTSDRP
APISDKEADAILNRLQQASESPVHKTVFEPGEVVRVTDGPFADFNGVVEH
VDYDKSRVKVSVSIFGRATPVELEFGQVEKN
>PBPRA3505 SO4716, conserved hypothetical protein
MRIRQASLAEAIIVLNQISEFDHPETEASLMQRLAGHASLILVAEHEGSL
VGVKIGYRFSDSTFYSWLGGVAPAGRRMGIAQALLDAQETWAIEQGYQEI
KVKSRNCFPSMLMLLLKNAYIIENIEKKGRVADYRIYFSKLLTNKKYSK
>PBPRA3600 SRLR, Putative transcriptional regulator, DeoR family
MLTNQNIMSKRNTQQRRHTIVSLVNEKGEVSVDQLATFFATSEVTIRKDL
TALETNGLLLRRYGGAVAMPSEIVSVDVEDNVSVRKLAIAKAAALRIRDH
NRIIIDSGSTTASLISLLGSKQGLIVMTNSLNVANALNELENEPTLLMTG
GTWDPHSEAFQGQVAELVLRSYDFDQLFIGADGIDIARGTTTFNELIGLS
RVMADVSREVVVMVESDKIGRKIPNMELPWSNISTLVTDDDLSAEAKEQI
EHQGVQVICASIE
>PBPRA3487 STY3849, conserved hypothetical protein
MFRLITPKTDDDFARYYDFRWRMLREAWRMPVGSERDAYDELSAHRMIVT
DNGETIAIGRLYMTPDNDGQIRFMAVHPNYRHQGMGAIVLMALESLARQD
GAKRLVCNAREDAIPFYLKNDFTSQGELSDERGPVRHQQMLKHLDPLTDV
VRHPEWCQELQELWQYQIPISDKMGIKISQYTGYRFEVSALINANLNPSE
FMFAGSIFTMATLAGWGFIWMLIKERKLEADIVLVDSHIRYVSPVKERPR
AVVSVETLSGDFDRLAAGRKGRVIVEVNVYSGETLASTFTGTYMLFPSQA
EADSRC
>PBPRA3418 STY4386, putative transcriptional regulator, MerR family
MYLIGQLAKLCGVSNDTLRFYEKNGLMKPAGRSNSGYRLYSEENLSRINF
IIRAKAIGLSLDEIRELLGIRLEASQHSCAEVKAITQTKLDEVDVKIAEL
TRIRVALKKLNDACCGHADDDASHCSILEALDERDCCSTLE
>PBPRA3586 T3631, Hypothetical GntR-famly transcriptional regulator
MEQQKSALNRNLSYKLAESIGRSILQGENAPGDILPGEIELGEMYGVSRT
AVREAIKMLAAKGMVHPRPRIGTRVLPKRNWNYLDQDLLAWLNFSEHSEL
VAEFQQVRMTLEPEAAALTALNASDADREELQHLMQEMHLLGDDFNQDKW
IEIDTRFHQLIYFASGNHFISPFGNLFKAVFENYFRIITRERLLKLDIHQ
QIVDGIIARDPDRARQATVDLLK
>PBPRA3535 T3643, putative transcriptional regulator AsnC
MTQPLRIDDLDRDILKALMHDARIPYAEMAKRFNVSPATVHVRVEKMRAS
EIITGTEVVVNPKLLGYDVCCFIGINLNAARDYHSAIEKLKELDEVVEAY
YTTGAYNIFVKLMCHSIEELQYVLIDKLQAIDEVQSTETLISLQNPISRN
VKP
>PBPRA3447 VP2933, hypothetical protein
MTKLRFHHLEPLRFPLVNRLYKSYYPAGKAKKDEIIWVGDNEKGIICVVR
FKQFENIQLLTGMLVHPEFREQGLAKNLLAATKTQINCKPCYCFAFRELI
PLYSNANFHLVDKIELPEVLSNRLIRYISSGKDLVAMRYEA
>PBPRA3393 VV2418, putative transcriptional regulator, LysR family
MQRCKNGMKLDDLRALIAIAQHGSFRAAANALDIPPATLSRRLQRLEDTL
GSQLVIRDSRNVALTPLGQNYFERCQPLLDELQATTSELMDTSSSNPRGA
LRISAPVGLLTYQLMPLFNQFLALYPEVTLSLNHLSNQHHDYSQEQYDVV
FRVGQQPNSSFAAAKIGESQRTLVASPEYLAQYGIPHHPDELNHHSRLAT
VPEFEWALTCKTDVAHPETIWINSPVRMAIADLNSVKQAAISGLGIACLP
NYVVADALEKSTLTTMMDDWYSPPRPIYMLYQRLGYVPNHITCFIDFMRN
ALTGT
>PBPRA3612 XAC3906, Putative ParB family protein
MNMSKRGLGKGLDALLATSSVAQAKQQSAEKAQSLSADGTLRELPIHLLQ
PGKYQPRKDMSDEALAELSDSIRAQGIIQPIVVRRLASQQYEIIAGERRW
RAARQAGLQNIPCIIKDVNDRAVIAIALIENIQREDLNSIEEAQAFERLQ
SEFSLTHQQIAEAVGKSRAAVSNLLRLNQLEAPVKRMLERRQLDMGHARA
LLSLDADMQLEAAETVVTKMLNVRDTEKLVKKLLNPVSERVRPVENLEIK
ALENSLSERLGTQVAINHQKNGKGKIVISFDEAHKFKQLIAIFGQEL
>PBPRA3395 XAC4180, putative transcriptional regulator, LuxR family
MLNSTLFFDFFSNTRIEHDYYIYRQALPDPALILSVNELIWFYSSDSVIK
NNSEKVAMDAQYTIVIADDHPLFRNALFQSVHMAISGANLLEAESLDTLL
SLLEKENDVDLLLLDLKMPGANGMSGLIQLRNQYPDLPIVVISASEEITV
VKQVRSHGAFGFIPKSSDMRALISALHQVLEGEPFFPEGLGDEDDEINDL
AQKIASLTPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLG
VKSRTQAVILLQQMDLTQ
>PBPRA3540 Y0361, putative transcription termination factor
MHINCYSVHFLTSPLVNSILNQNRTPILTDKKPTTMNLTELKSQPIPKLV
ALSESLGLENLARLRKQDIIFSILKQHAKGGEDIFGDGVLEILQDGFGFL
RSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKDGERYFALLK
VNAVNYDKPDNARNKILFENLTPLHANDRMRMERGNGSTEDITARVLDLA
SPIGKGQRGLIVAPPKAGKTILLQNIAQSIAHNHPECVLMVLLIDERPEE
VTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLD
SITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTI
IATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDFNRSGT
RREELLAKPDELQKMWILRKIVHPMGETDSMEFLIDKLSMTKTNNEFFDA
MRRQK
>PBPRA3467 YIJC, putative transcriptional regulator, TetR family
MGIRAQQKEKTRRSLIDAAFSQLSADRSFSSLSLREVAREAGIAPTSFYR
HFKDMDELGLTMVDEGGLILRQLMRQARQRIAEEGSVIRTSVETFMEFIE
SSPNVFRLLLRERSGTSTAFRAAVAREIQHFVAELTEYLEAKTGVTHEEA
YIQAEASVTLVFSSGADALDLDPQAREEHEEKLIMQLRTIAKGAYWYRKE
RERRELRHKL
>PBPRA3430 YPO3737, putative regulator of sigma D
MLSKFEQVQQQWGGTSDVIDHWLVSRQQLLIDYCKLAGLPPFESNTRQLP
TSSQLQLFCQQVVDYISAGHFKIYDMVMEKWNTAGYSPTEDISLLYASIT
QTTDPILNFTDRYSDIAEENTLTDLDKDLSSIGELLELRFGLEDSLIELI
SESLACPPGA