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Gene list

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COG category: Transcription
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 26

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# Photobacterium profundum, ss9

>PBPRA2284 hypothetical glucose kinase
MKTCLAVDIGGTKIAAALVKDNVIVTRVQISTPTSKEASALTVALTDLLT
PLALEADHVAVASTGIINHGVLTALNPDNLGGLNHFPLHQVISEITQLPV
VVINDAQAAAWFEYKALNQAVSDMAFITVSTGVGAGFVQKEILNTGTRGI
AGHAGHMLADPNGPICGCGRKGCVESIASGTAIGIAGQSFFGTDCDGETV
YQHLLTGDKNAIAIVDRSASTIANLIADLTISLDLDIVVLGGSVGLASGY
LARVRTYLERLPNVYVPDVIAASSGADAGLLGVALWAEQNIK
>PBPRA2215 hypothetical protein
MPSLSLLDLSFIIFESDKTPMHVTGLVILEPPKEHAATYAQDLYGEFLQQ
TDVTAPFNWKLQWSFTGKPSWQTLPKVNLEDHLRITMLPSPGNDQQLQQV
VGRLHGQVLDRSRPMWEVWVIGGLENNRVAIIFKVHHSMADGVRASSLFT
RSCATNPEDSFSQPIWQCDLRKTASERRAETRLTNMVIKTATQASKQISL
IPSMFRLGSKLALKAVKLADCDLKVPFTAPKTPFNLSPKRSRAVSLGQFS
MGRLNQLSRITGSSMNDVLFTVSDIALNRYLNDRSLPLRKPLVAMMPMSL
RNKGELESKGNKMSVGHVELGRSHLTSLERLEAIQQATVDLKNEALNISP
DAYINYSLLVNGASLISGKFGLNGFIPPVSNLLISNIPGVKDTLYFMGAK
VKEQYPVSLLMPGQTLNITFFSNAGQMYYSLVACSQSLPGFEVIAGYMEE
ALNELEQDIMDTAVSAVSEQMESHDSETVAVEMAVLAAREALTPDDAEFE
RLYIEKQQRVDHLEKQLSQLTAMLSKTIEIDPAVKPINEELMNQPVVLDI
IPKTGSSAS
>PBPRA2268 AGR_C_43, hypothetical transcriptional regulator
MSKIREKNQDLIIEVACRLFALQGYAATKMADIAKEANIPKPNVYYYFST
KDNLYRAVLESVIQPLLDASKPIEQLDDPAEALTEYIKTKLRISRDHPYA
SKVFANEVMSGAKYLPQDIADGLLQQSKMIVEKFELWIEQGRMVKVSPQH
LMFTIWASTQTYADFSWQICNVLNKPALDNNDYAEAAEFLTQFVINGCQL
NK
>PBPRA2352 BP2216, putative transcription regulator, MarR family
MDKHEEVLIALRQIIRAIDLHSRKLNKDAGLTGPQLVLMRAIRDSGEKVT
IRQLSNNTNMSQATATTILDRLEKRELVVRERSKLDKRKVHAHLTEKGIE
VIAKAPLPLQDSFVSQYQDLDDWEQSLLLSSVQRISSMMKAEHLNVAPLL
EVGSITQQETTTEQ
>PBPRA2392 ECS1492, putative transcription-repair coupling factor
MKALSLLSLPLPSKKGDNRFIGNLSGAALALSVAELSHAHQGPILAVVPD
TQTALRLQPEISQFTSVEVNVFPDWETLPYDNFSPHQDITSDRLARLYKL
PTQSDGIILVPISTLLQRLTPRDYLRKHALIVRNGDRLSLDKLRLQLEAS
GYRHAEQVMEHGEYASRGSLLDLFPMGSNQPYRIDFFDDKVDSIRQFDPE
NQRSTGEIDSINLLPAHEFPTDEIAIENFRMRWRERFEARREPESIYQQV
SKRTWPAGIEYWQPLFFEKTETLFDYLPDETLLVTLGELEPSVDHFLADA
DHRFDQRRVDPLRPLLEPKELWLTKDEMFRGFKTLPQVRIRHENEPDKAG
RYNPTLTPVPEIIINQQLKEPFAALRRFTEQFKGKIVFSVASEGRREALL
DLLARIKMRPIVCASLEEAIEAPSDYTLVIGAAEQGFILESPSVAFICES
DLLGERVNQRRRRDNKKSINADTIIRNLAELQVGQPVVHIDHGIGRYQGL
QTLEAGGITTEYVMLEYDAGAKLYVPVASLHLISRYSGGADDSAPLHKLG
GEAWVKARKKAAEKVRDVAAELLDVYAKRELKPGFKFTLDRESYADFCSG
FPFEETHDQALAINSVLSDMCKPRAMDRLVCGDVGFGKTEVAMRAAFVAI
DNNKQVTVLVPTTLLAQQHFENFRDRFANTAVRVEVLSRFKTAKEQKQIM
LDAEEGKIDILIGTHKLLNASVKYHDLGLLVVDEEHRFGVRQKEKIKAIR
ADIDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREKDDA
IIREAVLREIMRGGQVYFLHNEVDSIEKTTEELAKLIPEARITFAHGQMR
ERDLEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTIIMNRADNLGLAQL
HQLRGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGFTLA
THDLEIRGAGELLGDEQSGQIQSIGFSLFMEMLEQAVEALKEGKESSLDD
LLRKQTEVELRLPALLPDDYIPDINMRLSLYKRIASAIDEQDLNDLKVEL
IDRFGLLPEATTNLLTVNNLKLKAAAVGIRRIEAGEKGGYLEFEQDAAIN
PVFLVGLLQSKPQHYRMEGPTKLKVMAPMTNRKERIKFVDQLLTQLSENT
I
>PBPRA2249 MERR2, Hypothetical merR protein
MLVQPQKPTEGFRQYPSEVLQRLRFIKRAQELGFTLDEIINLLTLGDGDC
LEVQSLAKQKLVLVSKKIADLQRLESNLSHLIDQCSSTSDLSCPIVDSFK
E
>PBPRA2332 MLC, putative transcriptional regulator, ROK family
MYVAQPGHIDHIKRNNAGSVYKLIDLFGPISRIELSKRSLLAPASITKIT
RELIDAHLIKEAQCQEPLSRGRPAIGLLPANEGWQFLSMRLGRGYLTIAL
HELGGDILVEERQEIEELQQEAVIDKLLSEINIFFANHVSELDRITAIAL
TLPGLVNSQEGIVLQMPHYDVKNLALGPTIHEATGLPVFIGNDTRSWALA
EKLFGNSRGVANSILVSIHNGVGAGIILDDKVLQGSTGNVGELGHIQIKP
YGKRCFCGNHGCLETVASLKAILEQVEQRLKEGHPSCLHGTTLTIESICD
AAVAGDTLARQIIIELGHHLGQAIAIMVNLFNPDKILIGGEFNRAKSVLY
PAILECIRNQSLPVYNRDLIVEESCFYTQATMPGAALVKQAMYDGHLLMK
LVDG
>PBPRA2119 PP2952, hypothetical transcriptional regulator, LysR family
MNTTDLELFVRTADIGNITAAAVQLDISPAAASAALKRLEKQLGTELFIR
STRQLRITAEGERFLLHCRQALSSLDDAKASITEMKGEIAGEVRLSVSSD
LGRNLILPWLDEVMDNNPKLSFQLSIGDSLADFYMDKVDVALRYGQPEDS
TMIAFKLATVDRVICASPAYIATYGSPQKPEDLLHHNCLLYQLGNKTYNQ
WDLFSKNSDDTISNTDDSIKSKYKIKVSSNRMCNDGDIVRRWAVAGKGIA
LKSRLDLSHDLNAGRVVELMPDYYVKPTSLWLICPSRKQVTPAILLLRDL
LRKKCQALLASKK
>PBPRA2308 PSPTO009, hypothetical transcriptional regulator
MTASTSKKYHYVEQYITQRIDQGSYQVGDKLPSIRELSEQLAVSKNTVIR
AYQELEAISIISSLPRSGYVVCQPTQPASQPANEPSYVDLMAISKTILKH
SLEQYSMPAGSAHPNTDFPAIRSLYAEIGRHSRYQTAIPCHYQMPPGNEI
LVKQLVHINEELGIITSPNKILITHGAQQAISLSLQALTQPGDIVLVDSP
CYFGTLLLLESLGLKALEIPTNTTTGIDLVELSKALKQWTVKAILLNPSY
NNPTGAVMPDSARRALLNLTTGIPIIEDDVFGGLAYQNRPKTLKTLDTEG
RVIYCNSLSKTLDSRLRIGWVLAGKYQHQIEKRLISDNMGSLNLMQSAVG
EFLTTGKYRQHLNKIRRCYRVNQRDFAACLTHAFDRCPSLKGQYHLSKPE
GSFLCWLTLPQHADGFVIYQAALAAGISLLPGKMFSTQGQYNHCIRFNFA
NFQNNRQWQQGLTLLAGIIAAHLEEIAYTKEGK
>PBPRA2242 RA0906, putative transcriptional regulator, GntR family
MTSLSKSVQKKSKTKSPNQTQDDVVYCHIFDAILEQRLPPGTKLNEEALS
EIFSVSRTIIRRALLRLSLEQVVVIRPNRGAIVAAPTIEEAKQIFKAREV
MELAITELAVENATQEQIKQIRKLVTAELNAFEKGDFGSGIRLSGEFHLK
LAEMANNAPLLNFQRSLVSQTSLLIAQYEVGNNANCSLDEHTILLDAIEA
GDKEKALSLMAEHLNHIRSKLSLDGETASNDLHVVFSNVIKSNALNKA
>PBPRA2178 SMB20219, hypothetical DNA-binding response regulator OmpR
MWIFMDSSALPSLPHLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNEME
QCLRDNSIDLIVLDLMLPGKDGLTLCRELRVHSNIPVIMLTAMGEEVDKI
IGLEMGADDYLPKPFNPRELLARVKAVIRRFNAIPEGKSVRQSKVDSVEE
AQDKESYVYRFNRWCFDIGQRELTDNDGIAVSLTSAEFTLLKVFVEHPRK
VLSREQLLDLAKGRETDVYDRSIDTIISRLRKKLEIDHKKPELIKTIWGG
GYQLVCEVTHD
>PBPRA2169 SO0096, putative histidine utilization repressor
MAQSPRYLQIKQYLNDKIQTRTWPPGFKIPTEIELSEQFSVSRMTANKAI
RDLVGDGLLKRTPRLGTFVCHKKAESPLMEIRNIANEVRNRGHDYSSQVI
SQHSVEAKDDIALRIGVRNGTMIYFTQIVHYENGLPIQLEERWVNPDFAP
QYLDQDFTAQTPNEYLVQTCPLSDIEHTVEAIIPIGRIISLLEMNEGEPC
LLLNRRTWSDKNLISTALLYHPGNKYKLSSRTKV
>PBPRA2320 SO0701, hypothetical transcriptional regulator protein, LysR family
MKTEDLKLFHQIVDTGSLNRASEIFDLPKSNISRRIKSLEEELNILLFHR
QNRALQLTEAGSKFYTKTKAMLIDLEASIQEITAPTYEVSGHLRIQLLPF
PEILDIGKMIFTFMDMYPKISVEIITSAEDKNMVENHIDIALRVGEGNTL
EDSSLVARPFKHASFGFFCTPEYVKQHGRPQTADDLRQLNVIRFRFPNGQ
IYGNLPFGKDETVEVSGNLVMNSVPLCMEACLQNRGIVFIPEDIGNYYLE
RDMLIRLFDHIEPSIKYGWLVYPSRKNLTLAARTFVEFILAEVEKEPICG
RIKTDVRGIVM
>PBPRA2125 SO3277, hypothetical transcriptional regulator, TetR family
MDAIAVKAQVSKQTVYSHFKTKDELFETCIKAKCSENQLDGRLVDDPRPI
REVLCDFAFSFQSMLLTKEAQHTYKTAISQRDSHPQLAKVYLSAGPKATA
DMLADYIQYFVDKGVLNVPIPVHEAAMQLLLMWHGRIVYWSYLGEVNGET
EEERRTYLNSCVDLFLAGYKVKP
>PBPRA2301 STY0675, putative transcriptional regulator CitB
MLIVEDEPNIAEFHSYYLKQTRRFRPIGIAGNLAEARKMVQILKPKLIFI
DNYLPDGKGIDLLKEVTSSKGAADVIFITAASDMDTVREVVRCGVFDYLL
KPISYDRLKDSLDRYLKYTSSLLASDNANQRHVDELFNFQSKNKQLEQFP
KGIDELTLEKVKIAFEESDAIFTAESLGKVIGTSKTTARRYLEFSTANGF
LDAIIQHGKVGRPERVYRKK
>PBPRA2286 TTE2419, putative rpiR-family transcriptional regulatory protein
MTDQQTLLKAGKVIDTLGSLYDSLTPSAKRISDYVLAHSSEVTKLSIAEL
SQVANVGEATIIRFCRTLGFKGFQEFKMELAIELSSLNQQEKSILDTDVT
PQDDAELIGQKLHKTINNVLAETLNLLNFDTLEKVAKQIKSAKAVYFFGV
GSSGITAEDAKNKFMRIGFNVDALTNNHFMYMKASLLQKGDLAVGISHSG
SSKETTKALQLAKEAGADTVAITHNPRSAITEFSDFVLVNGNRQGKLQGD
SIGTKISQLFVLDLVYALLVNEDADSAKENKIKTTNALES
>PBPRA2353 VP0475, putative transcriptional regulator, LysR family
MDNSVLLEGIETLLVLAKEGTMSKTGSRLYISQSAVSKRIARLEKRLGKK
LIEPAGRYIKLTADAITLIDNVGPSYKEIKGLIFDQQPYQDHTPIYLACS
ETLVAGYLGSMMGAYIQHDPYISITTHHTPVIIEKVQSGDATIGFCAGHL
TPQHGLSTRHLFNEPFSVISHQPLRQQPLQLLVNDFNNPSNANQASLLQK
AGIIPLMEMDSYTAAAQLALGGVAPALVPVSIIKTLKIEPIYCHHFAFLD
ELTRPVHLCYRQKSYQSERVSKLIETIADSVPKAI
>PBPRA2167 VP1985, conserved hypothetical protein
MQHVLPKGLKHLHDYGLNTRINPLTAVSGHTDKSLIFIKRTISQLLPFSF
YSNFLVNYWAVLYHSHHGFIILHTLSQLKSGELAGTQRLKLSENLTSFPL
EILSLADSLEILDLSNNQLTSLPQELVQLKKLKIIFASNNQFEVLPEVLG
QLPHLEMVGFKANKIHSVPEHSLPAQLRWLILTDNQIKTLPNSLGERPRL
QKLALAGNGLTHLPQSMSQLDNLELVRISANQLTECPEQLLSLPKLAWFA
FAGNPFSQTKSAIQSVPVLPSSSFSLQDVLGQGASGVISKATWNNKYQTD
FPEDIAVKVFKGEVTSDGYPDDELQACLKVGNHPNVVQSLAQVNEDGYLA
LIMNLIPSHFRNLGLPPCFNSCTRDTFSPDFTLSVEHIDKIVKQMEEVFV
HLHSNQVCHGDLYAHNTLYDEEANIIFGDFGAASMYHMLTEAQQACIKQI
EHRALCHFIDDLLSVCAEGNRDEKTFDLLKQKLSH
>PBPRA2343 VV2111, conserved hypothetical protein
MRISHKRKVQLKLQKRIKATVAVAKPTAEKVVVKKAPTAETVKAAAPAPK
VVEEQKPVEATAPAAAQVSLTPKQQQVLDIVVSNPEGLNPKGIGLQAGQE
DAKAASWATGALKKLAEEGLVERIQLAGNKVLYKAA
>PBPRA2222 VV21654, putative transcriptional regulator, LysR family
MAFNIALLIDILPHTLNFVAKSALIMRNTDNFLIFYHLIEQGSFSKAADQ
VGLTKSVVSKRITRLEQDLGVQLVYRTTRKLTLTEAGEVFFGHAREVYYS
VQNAEEAMSGLGESLTGTIRLTVPTISGELLLPKAISEFSAKYPEIHIDM
DLDNRFVDIVKEGFDLAIRTGELPDSSFIARRLVDAHWVICGAPEYFARN
GVPKIASELVNHNCLAYSYQETGAKEWLFKGENKPYTIKVNGNFTTNNAS
ALRRAALFGQGLVYVPKVLVAEDLKAGSLIEVLQEQVAKCLGIYAMYPYT
RHQPIKVKLFIEHLYQCYQKHEDKF
>PBPRA2361 VV21654, Hypothetical transcriptional regulator, LysR family
MPQIDDLVLFTQVIEHASFSKVAELNKITKSVVSKRISKLENQLGVQLIY
RTTRKLTLTEPGSILYHRSKDINQVAQSAFDAITGYNEALSGNIRVSVPT
ISGELLLAEALSDFCQKHPGLTVEMSMDNHFVDLVAQNYDLVIRTGYLED
SSLIARHIFNSRWVICASADYLEKHGVPETPKALHHHNCLGYTQQSTGPF
DWLFVRNNTETYTLKVDGNFSSDNAVALRKATLANNGIAYLPTCLVFDDL
KSGKLIEVLAEHSGKVVGIYAVYPYTKKPSKRIQALIEHIRERYITMKER
F
>PBPRA2120 Y1949, Hypothetical transcriptional regulator, LysR family
MFSYNDLQVIDVVARRGSFSAAAEELHKVPSAISYTVRLIEERLAVELFV
RLHRQVKLTPAGEYFVEEARKLIKQMELMRLQTQRVANGWSQSVSVALDT
VVRESRVNTLVRDFYCAFPDVELHLSMEVFNGVWDALADGRADLAIGATA
AVPVGGAFDYRDMGTLTWKFVVSKDHPLANVEHKLTAEELVQYPAICLED
TARTLPKRVTWIMDNQRRIMVPNWYSALQCLKAGLGISVVPTHMAIPRIE
SGELVEKQLVNKPAVSPCCLAWNTECVNPALEWLLAYLGDSEQLHREWMR
>PBPRA2146 Y2113, putative transcriptional regulator
MATIKDVAKLAGVSTATVSRVINNTTYVEPVTQERVQKAMKELNYHRNAR
AAALASRSNNTLGLLTGNLADPFFALIAKSVEAVARSQNCQLVVVSGGHN
AQREKEGLDFLISQGCEAMVVHSKMLDDATLLRYSAQLPAMVLINRTIPQ
LAHRAVWVDNRAGATKSVDHLIASGHRKIACVTSDLPIEDRTERLEGYRQ
AMVSANLTIQPNWIINQPFSEEGGEAAGKLLIKQCPEVTAVVTFNDVMAA
GLMASLYEQGYKIPSDYSIIGFDDVLLARYLYPRLSTMHNPIDLMSTHAA
TLALQLREQSEVLPSTNRFDANLVCRQSVSIPRQA
>PBPRA2238 Y2443, putative transcriptional regulator, LuxR family
MINVFLVDDHELVRTGIRRLLEDVRGIKVLGEADSGEEAVKWCRAQHADI
VLMDMNMPGIGGLEATRKILRFNPDIKIIVLTIHTENPFPTKVMQAGAAG
YLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMALSQFAPDSENPFKDLS
ERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLDIGGDVELT
HLAIRHGMLDTETL
>PBPRA2347 YPO1576, putative response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family)
MFCCIFSTLLAMKDGCSLASFLHFLGYLQMIKVALVDDHIIVRSGFAQLL
SLESDINVVGEFGSALEARKGLPGSDADVCILDISMPDESGLSLLADLPS
GISCIMLSVHDSAAIVEKALESGARGYLTKRCSPDELVQAVRTVASGGCY
LTPDLTMKLVTPNRSRQPIEQLTKRERQIGEMLALGLDVKAVAVRLGLSH
KTVHVHRANAMDKLNVKNNVELAKCFESETV
>PBPRA2355 Z5926, hypothetical transcriptional regulator LYSR-type
MLEIYLDSLLVSIYYFFIFSSNLMNIESKWLEDFLALADVRNFSMAAKIR
NVTQPAFSRRIKALEHMVGTELVDRSKTPVSLTPSGRLFRITARSLMNQM
VDGIGQLSDLSKLGGNMVRVAAAHSLATSLVPAIQPKLLAGKHSPLLSVE
AIDVDQAIEELQEGSCDLLLAFDDELLRLPPYQSLQIGQAELLPVCACNS
EGQPLYQLTKDKEVPWLAYSPSSYMGRQIEAIRDQVNLKAVFLSSMTDLL
KVLVLKGQGVAWLPDYAIQEELASGKVAVVGEPYLRLPITYYAYRYQARL
HPAGEQVWQTLRNLNGE