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Gene list

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COG category: Transcription
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 17

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# Photobacterium profundum, ss9

>PBPRA1672 hypothetical transcriptional regulator, AraC family
MKHCSNSIPITNINSTHDQLISSFDKAPLGSSVGDCLGCQIHTLSGYGGC
TSHQEGQNKKTTFLRLLTVVKGDNIRWHNGKDEPKQLQKGKSVLIFSENT
FNDVFISEKESYIEIADIRFDCNYLSPIYQQMSEKFQESGINPQTDNIPL
VFNTIIEIQQFINQLQTELTDKESGVTDNLLAVLQAYHCLSKILDQLEMI
KSNKTDHECSCLSSRTLNKVRKAHTLITSKPGENWSIKEICKEVGTNETS
FKRGFKLLFDNTFSKVLQQARMEVAAKELLYTDKPIIDIVYNIGYSSPSY
FSKLFKQYSGEKPLQYRRQRQ
>PBPRA1692 hypothetical protein
MTTKALTRCYRFHDVDFEPDLNLLVWHDETETRLTLHESRLLEVLCYFSG
EVITSQTLFDKTFVQLGPDTENTHDQFDLNSLFISLNKKLTHNNAMAIPI
QVVPKYGFRVPLPEKTCRLFHTFKEPKQDVAPTSHTEETPISTTEDIVKN
SIFHKVSVLMIAIASIVLYFAYKL
>PBPRA1671 hypothetical transcriptional regulator
MEESIQTNGNILFKHNDCEFSLRCCALNEEVVLSLFMGRFYAPVQLDTPD
KTEYDTVTVMLNLGSAVYYQIDSLKAPRIFPSNAIALCYSDTRAGLCRYQ
PQSTKLFALQVPRRVLLEYIDVMQIGLLTKRKLEQREPFLIMKSANSQFH
RIAEKLSEPNTNSNASIHRHLSYSFISDAARYLLQEEVTLPRRMDSNKGL
EKAIEILDKEFVLPPTITQLARRIGTNETSLKQWFRKEFNTTIHQYVLQQ
RMSKAVRLLSLGENPISHIALEVGYANHGHFAAAFKKEFGCTPSSYSNKS
NTQRIALSCE
>PBPRA1593 hypothetical protein
MKYQIVGGAGLHRSETKTVDMMVKQLPDSWFGYAGLVVTDSQGSMEIDTL
IITADRLLLVELKEWNGSITYEGGKWLQNGKPRGKSPYQIKRDHALRLKK
LLQEELSRKLGYFLHVEAHVVLCGSAGPENLPLSERRYVHTRDEFLAIGK
PKHYDKLVQATNFGHLFEGDNPRPNSTKVLPVIQSFFEGPKVKALPLKES
GYIANDKPFFSHPHKIYNEFRAAHKDNSLHRGLLRQWDFDALGVANAEQS
LWAEVALRETRVGRQVRNGSATMRDYMLRAVSELSEEEITDDARELYELR
RSFKRLDEVLDSEAEGWSKPQRIDRVRALLAPFSELHSLGVAHRDIDPHN
LWYAEDQRSIVVTGFGAASLDGRDKLEALRPTLQSAPYMIPEDAFEEAAE
PYRQDVFMLAVVVYRICFAGESLLAGEQVPEWRTPQEDPFGGALNCWFEQ
ALNLEPSKRFPRADIMLNEFNSATKEQIQGHDEANQIHQELQQSEFFRDG
MNSVGVLMEFQPLPELLAEVYPALAAIASTGSISYRSCQGEQSLQVKLWD
GVTLNPQQPGVNRRIHAFKQRIDKLKQLTLPTPAVHASGLLGQGGLYVVS
EHLDGHPWPQFIAETELDQPQRLAIAEQLINTVQRFHEKQLPHGDLCPNK
LLVQASEQPTLTLTGLLEYSDELTANECYQPENPDATDAFGRDCYAIYRM
VEELFAEDMPVLLQAELERAKQSVDGVPIALDPLLQSLKTPLIPEVNKVI
EPKQKLAQAIPICWGSDTWPQDLKLLEQNDGSYHFNCNWSTNPRFSHELR
CYITGLGEQLLIELDPENRIITRINYHTDLSIEQTIKAGKHSQTKIDTPL
SVQRGSLTERNDLIELLMGLEPVIDAIIERTNPNQEMDEDDFDSSESSPV
ELWQALADTEGELRDQVNIDSADYQESPSGCLLYPYTTESGADLNFELDD
KIIVYLKEKRESTQLGELRLSETTPNLLAIRFDFDAARKRISNGSQLQLE
SIRNKSSRELRLRALQRVIDHKAEIPQLPQYFDYHQKPSMQQMQPQPTAE
TLRELYDQPGQGFNEQQLMAFQQLVVQGPVGVLQGPPGTGKTTFVSKFIH
YLYQHCGVNNVLLVGQSHAAVDNVAIKARELSHQQGMELDTVRIGHEQMI
DDGMLCVETKALQRQIQHKFHREYDLRVGTLGKRLGMAPSLVEQLCQLHR
TLNPLMVSFAQCQRELVKLEKTKGSGVYYQDVMAQLSKQLDQIKQRTQTV
IHSMFANELSESLVYDQTLMTQLADLIAVQRCYNNPENLERFLQLLEMSQ
EWMDVLQGGEAGFDRFMLKSKQLVCGTLVGVGRRRLELTESSFDWVIVDE
AGRAQAAELMVALQSGKRVLLVGDHKQLPPFYHQQHLKLAAKKLELGRGI
FYESDFERAFKATTGVTLDTQYRMVEPIGDLVSECFYAKDIGKLHTGRGH
SPNWYAQLPSPWNKAVSWIDSSSPNPEGGEDVRGDGRYYNPREVRLLLDA
LQTLASDDNIAQLEQTITAEQPYPIGIITMYRQQKEEIENAISRAEWAGA
LRSLIKIDTVDSYQGQENKIIILSLVRDNSDKLQGFLRDAPRINVAISRA
QERLLVLGAGRMWSKDNNDSALGSVHEFISKQVTAAEPNYQMLCGQSLLG
DND
>PBPRA1781 conserved hypothetical protein
MASHSTIGNYYIDTLTQTVTRTTDQQLIKLSKSEVLIVALLASNHGVTIC
REHLLKCCWPGKVVTHSSLTVAIKNIRNAFAIIGDDNIIVTEPKKGYSIR
LQENDVPLHAPKFHLKGIDPLPETVLPLNIEQTAHFTEHEKINVKSTTLL
FVKNHFVSVVFFLLTLVVFSKYFLFVEHTSVNGISTLYDGVDIPERISLS
VNSIPSDMSELIVYPLGGLCSSFQIIGFNDMSIVDFTAKIDQGDCNNE
>PBPRA1543 ALL7170, hypothetical protein
MNISLVAPSSSSVDVLMKLIEELFAYEALPKKIEQTNHAVNQLLSNPELG
QAWLIEVEHEGEKIIAGHIIVSYSFSLEHGGRVGLIDQFYLKPDWRQQGI
GTELIPQIEHQIAQSGIHALSLEVNIGNAGARSFYERHDFVPRRQFCMMT
KVIIPSEVPLNIAS
>PBPRA1728 CV3482, putative transcriptional regulator, LysR family
MNLRHKSVDANKLIAVMPDLAVFIIVVDEGSYTAAAKKLGVTPSALSKQI
SRLEKALSVKLLERTTRKLMISESGTKIYEQCKVMTNAAKQAVEIASSEH
TIPSGTLTVAAPKAFLSIVLQPLVTPFLTQYPDIQLKLKASDGEIDILSE
GIDIVFRLTEHPSEALVNKKIGKVNLALCASPEYLALRGEPQIPTDLRQH
DCIYLGETTTDHIWDFIKDEEFQSVSVTGRYAVNHSQMRLKGVIDGLGIG
IFPDFVIKQALENGSVKEVLKDWTMKGNYQGDIALQFAQTKFMPARLRAF
IDYVTEHLAP
>PBPRA1654 MM0481, hypothetical protein
MEIKIFSEQYRNALRSIYLESRKSTFTWLETSTYQLLDFDQDTEEERIHV
ALEGDDVLGFISVWEPDNFIHHLYVSDHANGIGVGTQLLETAKNLSDKPL
TLKCMNKNDMALKFYASKGFVIASQGSNDYCDYYVMTNRL
>PBPRA1572 PP0792, putative fructose transport system repressor
MTLDEIAKLAGVSRTTASYVINGKASKYRISEKTQVKVMAVVNEHNFRPD
HAATSLRAGSSRSFGLIIPDLENSSYAKLAKLLERNARKAGYQLIISCSD
DDPDTEMKVAETLLSRRIDALLVASVLPADNDFYPRIQTGGVPVIALDRA
LDDEIFASVISEDLEGAFELTQTLLNKGVNSIGLVGAVPELGVSKEREQG
FLTAIRRHQPDINMHIAYGDHFSQEQGQKQVQQWIDSEHFPDAILATSYT
LFEGILDCLLANPELMSKIHLATFGDNRLLDFLPIKIQSLPQQFELIADN
ALELALNAAAGRYRTGVEVVPRKIKRR
>PBPRA1748 RHLE, putative ATP-dependent RNA helicase, DEAD boxfamily
MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTG
KTAAFGLPMIQRLLASQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDS
ILAYSKNTSIKVAVAYGGTSMGVQVKALKSGVDILIATPGRLLDHAFTGT
VDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKRQTLLFSATFSNQV
KKLAYDILADPKLIEVTPENITAESVTQMVYPVDKHRKRELLSYLIGSRN
WNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEG
KVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGS
AISLMSIDEEWALRAIEELLDTRLPQEWLEGYEPDPTIKAQDNRRSSSTS
EKRRIKAKSKIHKNRGRNQTKR
>PBPRA1648 T1507, hypothetical protein
MHCSSFSKSLVAGFRIGWVAAGQMALPIQKLQLMSTLSASAPIQLALAKY
LSTRNYENHLRQLRRKLEQRKFATWQLLRSYFLPNVSVNYSEGGYFLWVE
LPEHLDATELYQRALKDNISIAPGKMFSASKQFNHCFRLNSSFECSEPEE
RAIKRLAELIQNMLDE
>PBPRA1747 T1700, Putative ROK family protein
MYYGFDVGGTKIEFGAFNEKLERVATERVATPRDDYDKLVDTIVGIIQKA
DNDLGCEGLVGIGLPGMEDARDGSVLTSNIPAAKGRFLRKDLEAKLGRTV
TIDNDANCFALSEAWDESLQGEKSVLGLILGTGFGGGLVFDGHVFSGMNH
VAGELGHTRMPIDAWFSLGEKAPLFTCGCDNKGCIDNYLSGRGFEQLYAH
YYGENLKAIEIIKLHATGEAKAVEHVDRFMEMLAICLANIFTGLDPHVVV
LGGGLSNFELLYQELPKRIAKHLLSVAQVPKIVKAKHGDAGGVRGAAFLN
IKK
>PBPRA1753 VPA0938, hypothetical AraC-family transcriptionalregulatory protein
MSWPEYYEISDQCRTTTIDQGQLMALEKHQIVQCGVNYARQSFTVYRRNP
NMHMLLFTCCGEGWLETPVRKWTLESGSVIHVPPGSANGFGITQKEKDAD
NETLDAENENTWDIAWVMLSDNGEWAKTMPNEVTYSKTQCADMLRKTIDC
LHQSMSLPYPVGNQLGDNLVEQIRLLVTNRLPTSMPISLQRLEKVFDRAK
EQLHRQWSVAELAALHPCSEPHFHRLCQQYYCHSPIAHLTRLRMEYAARL
LSATEWPIQHISESSGYPNPANFSTRFKKWSSLTPREFRQRFKY
>PBPRA1805 VPA1393, conserved hypothetical protein
MKLRKWQSACVKQVLQKYNNYLKHFMCLATPAAGKTTMAAEVALQLVKQD
KIDFVICFCPTKEVEQGIRRTFERHLSRSFNGSIGALGGVYTYQSLLTLT
PEFWQILREYRVLVIFDELHHCAGDRLPNANAWGAQILINICDYATYTLG
LSGTPWRSDRLPITLGRYLDDNQIECDFTYGLKEAVADAVCRQPRIVLID
NDRITVTSRKEGAKTFGSLTDAFSGSDLAYKSIISEQETMKHILSQGVSK
LSELREQNPDAGGLVVASSIEHAIELAQMLQSEFGQSTVMVSHQDSMPSE
IIDSYRKQTTEWIVSVGMVSEGTDIPRLQVCCYLSHVRTEMYYRQVLGRI
LRVNSSVNQEAWFYTFSEANLVKYANRIQNDLPDTSVIYELENEAASYSH
GGQTGQSQPNGISELSLRFDGRTNTNLNNNVNSNELYKAPDYQLIGQYRQ
KVISLFKV
>PBPRA1786 VV0135, hypothetical transcriptional regulator
MYRISELAERVGVSRTTLLYYEKLGLIKGKRLSNGYRSYSELDVQRLLLI
QQLQGGGLTLKECQACIEAKVDRQLLLERLEQLDVEIAQKQKSRQLLAAL
LGESQLTEWHELLDEIAPDAHLDWLIKQGFSEKCALRLKWLSKDMNQHTS
YMADFNKVFAQLDRWGPGSEEDTLQALAKVPHKPQEILEVGCGPGIATMV
LTNHSSANITAVDNDEQSLTHLMALATEQGIADRISTVCVSMMDIPFEAK
TFDLIWSEGSAYIMGVANALKQWRPLLVNDGILVLSDLVWSTKNPSEDTF
DFWRKEYPDMVTAQHRIEQAEAAGFEVIDSFALSEQAWASYYQPLQTRIN
ELKSGMRDSRALTDLEREYDIYRRRLDEFDYQMFILKKA
>PBPRA1807 XCC1604, putative transcriptional regulator
MYTESPLPIRLKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGRHMP
DIATLRRIADELGVPLSYFFCDSDNSAKLACLIEKLSEEDKKELIRKLEG
G
>PBPRA1539 YPO1265, putative ATP-dependent helicase
MYIIEFMYTLRPYQQDSVKATVHYFRKNTSPAVLALPTGAGKSLVVAELA
RIARGRVLVLTHVKELVEQNHAKYESYGLKASIFSAGLGRKETDQQVVFA
SVQSMANSLELFANEFSLLVIDECHRVPDDENSAYRRVITHVQSINPGIK
ILGLTATPYRLGTGWIYKYHTRGQVKTEQERFFRDCIFELPIRYLLDENF
LTEPKVMDMAVIGYDFSSLTPSASGNYRESDLDSIIEKSSRATPMIIEQV
IDYAKDRKGVMIFASTVNHAQEILGYLAHENAALVVGDTPLDERDRIINA
FKRQEIKYLVNVSVLTTGFDAPHVDLIAILRPTESISLYQQIVGRGLRLS
EGKKDCLILEYAGNCYDLYQPEVGDPKPNSDSEVIMVPCPACGFNNSFWG
KLDPAGFLVEHYGRRCQGYFEDDDTGEREECGYRFRAKYCEECGADNDIA
ARRCHQCNAVMVDPDKKLRDALKLKDAMIMKCTDFRLEPGKNKFDKPQLK
VIYVSDEGAEISEVWPLSNKTQKENFLKKFINPHLVDRHRPFTDTAPTKV
ANNEHRLRPPEIVIARKSGRFWAIRDKLFDLDQYQKVEVTTTS