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# Photobacterium profundum, ss9

>PBPRA0460 conserved hypothetical protein
MLDSMIYFDRQVLKGIKAKLDEANVNVSLHLESGTLLEELTREHWDYVIA
DYDKPHFQQIVQTCGAKSVVYSNHQRDDFSEKMSSVVMDNTCLASAALRR
FLDAKYTHVGFYTNEQDALQPWGQEREEAFQLLTMQAGIHFVHDVHQAMA
ARQFPFGVYCSSDRSARKLAQYCQCNAIAVPKDVAIIGTDSDDTERMLSP
LPLSSLDVNPYELGRFCVETLIKTIRFKRTLRLRYAPETLYEAATTTHCN
HVDDIVSRATLFIRNNFHLNINIKQVTDYCRTSRKTLDTRFLAAQGITAH
QYLTEVRVARAKYLLAHSQNKLDSIALQCGYPNQSYLTQVFGKQLGVSPS
QYRQASIMHFLSKMDKQ
>PBPRA0409 putative RNA polymerase-associated protein HepA
MPFTLGQRWISDTESDLGLGTVVAEDKRTVSIMFSACEESRLYARSDAPV
TRVMFNVGDVVESHEGWSLEVKIVEENGGIFTYIGTRTDTEEENVKLREI
FLSHQIRFNKPQDKLFAGQIDRMDRFALRYRALTNQYEQHKSPLRGLCGM
RAGLIPHQLFIAHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLAGRA
ERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVESLADATNPFETAQ
YVLCSLDFLRKSRRRFEQAQDADWDLLVVDEAHHLEWSEDKPSRQYQVVE
ALAEATPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYDTFVEEERQYA
PVAEAVTRLLSGEKIDDNARKTLVDLLSEQDIEPKLRLIESSDADDEHAQ
TVRHELIDSLMDRHGTGRVLFRNTRAAIKGFPERHLNMYPLELPSQYKTA
MRVSSMMSGSISAEQKAIKLLYPEDIYQEFEGESATWWNFDPRVNWLLEM
LKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIDRDKAA
AYFAQEDDGAQVLLCSEIGSEGRNFQFSNQLVMFDLPNNPDLLEQRIGRL
DRIGQQRDIEIHVPHLEGTSQALLAHWYNEGLNSFEETCPTGRAVYEAVS
DDLIALLACEKHEPEALENLIEKSAAMHHELKAKLDQGRDRLLEIHSNGG
NAANDLVTQISSKDGDTNLIAFSLGLFDTIGLNQDDKGENAIVVTPSEHM
MVASYPGLPYDGCTITFDRETALSREDLHFISWEHPMIQGGIDLLLSEGV
GATAVSLLKNKALPAGTLLLEMVYVVDAQAPKSSGIGRFLPKTPIRILLD
AKGNNLSNKVAFEGFNRQLSPVNRHLASKLVNSVQKEIHVLIAQAEQEVA
KELVTVRESAQTEMENSLQAELTRLQALKAVNPNIRDDELELIESQIQDL
TGYIGKAQIQLDSLRLIVVSHN
>PBPRA0471 ARGR, hypothetical arginine repressor
MNGYDIHGAIDLTAADESITSACKRLLQQQSFTTQDDIRHQLIKLGYNDV
SQSTVSRLLSRLSVAKVPNAYGKKVYCLTLENEPVQVGSSISSQIEFITH
NQLVVVVKTHPGGAQLVARLIDIQPHAEILGTVGGNDTVMVAPRDIMRIE
ECEKVVKIRLGIPA
>PBPRA0586 ATU2278, putative Transcription activator HlyU
MDLQQMEQNAPKAVVLLKAMANERRLFILCYLLEEEMSVGMMSEKLGLSQ
SALSQHLAWLRRDGLVDTRKEAQTVYYRLKSDEVRAMIKLLHGMYCG
>PBPRA0572 CPSR, putative sigma-54 dependent transcriptional regulator
MAYIINRYNCMLLSLVLTILAVISHGYCLLSKGLMMKRGVNMGVMPGALV
VFGGNSQSWLPSLEQAGWVCHRCYDLRAAESLLLDIGPCIGVVDLSKDDF
SINGIATLVNRNKQVRWLAVVREEQLTSDAICQFIASFCIDYFTSPTPAA
QLQETIGHQLGMLQLERKVWPDLGRFGQQGLQGTTEVMKRLRHQVQRIAA
NDVSVFIEGEMGTGKELVARAVHQASTRANNAFVRVSCETVTADWFSDSN
DEQHCDMNFSPCCFALADKGILYLDEISALSDQRQQELLQFIQDDTFTTA
AGEKVTSDIRVIVSTSYPVEQLVAEGKLRQDLLYRLNVVTLVVPALRERG
CDISLLAEFLLLKFARQYNSVAKHFSDEAQKMLITYPWPGNVRELISQVK
RAVLLAEDKSIEADHLDIPRLNDDKQSLKTIREESERGALLTVLENNKGQ
ISAAARELGVSRATMYRLLNKHDLVPAPRNFRDNP
>PBPRA0390 EBIG1361, putative arginine repressor
MRNSDKQERLIKAFKSILKDEKFSSQGEIVDALKAQGFDNINQSKVSRML
TKFGAVRTRNAKMEMVYCLPIELGVPTTTSPLKELVMEVGHNSALVVIHT
GPGAAQVIARLLDSLGKAEGILGVVAGDDTIFITPTNTTTTEELFNSVCD
LFDYSI
>PBPRA0585 ECS0018, putative transcriptional activator protein NhaR
MSHLNYNHLYYFWMVCKQGSVTKAADALFLAPQTVTGQIRALEERLKGKL
TKRVGRNIEPTELGQLVFKYADKMFDLSYEMLDIVNYTQRENLLLEVGVA
DALSKRLVSKILLEGVPDDERIQLRCFESTHEMLLEQLSQHKLDMILSDC
PVDSGKSPGLYSKKLGESSMSFFCSVPAKPVDFPACIEDYKLLVPGRRTA
MGRKLHQWFDQQGITPNILGEFDDAALMKAFGSYHRSMFVAPSIYAEEIE
ESNTIRELKRVKDIKEEYYVIFAERMIMHPAVKKICEADFSKLFK
>PBPRA0423 ECS0080, putative transcriptional regulator, LysR family
MTRRSSSIHPTDNYTMESNLRSVDLNLLTVFDAVMQEQNITRAAHNLGMS
QPAVSNAVARLKVMFNDELFIRHGRGIQPTQRAKQLFGPIRQALQLVKNE
LPSSIFSPETSTRTFKLALCSPSDMRFAPRIFRDITEQAPSIRMQLEAEL
DAELTQKMRYQEIDFVIDYVRFDEPGFCSTELFSDELVVIAAGNHPRIGD
SISEAEFTSEMHAVLKSMPGVKMFADHIYNKQVSCQQAYQGASLSNIMYV
VGQSELVAVAPRWLAESVAENLQLKVLPLPFESATVSGYLSWHESSQKDK
GHIWMRDQLLSICGDTTA
>PBPRA0430 ECS3950, putative DNA-directed RNA polymerase, sigmasubunit
MEQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDIVDSDQVEDIIQMIND
MGIKVVETAPDADEIMMTEDNTDDDAIEAAAQALSSVESEIGRTTDPVRM
YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPSAISYLLEQFDK
VEADELRLTDIISGFIDPNEEQTAAPTATHIGSELSETDLADEDKNLETD
DDDEEEEDTGIDPELAREKFLELRHSYEKMALAINTHGRHNATTEVAVGE
LSEIFKQFRLIPKQFDKLVRSLRDSMDKVRTNERLIMRMCIDNSKMPKKT
FIKFFAGNESSPDWIDEALNSGKPYAERLKNYEEDLRRSSLKLRILEKET
GLSIERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR
IPVHMIETINKLNRISRQMLQEMGREPIPEELAERMQMPEDKIRKVLKIA
KEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAATATNLRAATNDVLAGL
TPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSDVLRSFLDE
>PBPRA0500 GALR, hypothetical protein
MQFFHENNVSVPQQVSLVSFDSIDRCASFYPTVSAVHFPISKMARVAVEV
LINLIENKDISIDCHFEPQLVIRHGDRVI
>PBPRA0601 HD1699, putative transcription elongation factor GreA
MGCTEVVIFMEKVPMTVRGEQTLREELEILLKRRPIISKAIGEARELGDL
KENAEYHAAREEQGICEAQIRDIEYKLSVSQVIDVTKMENTGKVIFGTTV
KLIDINTDDELTYCIVGDDEADIKKNLISVNSPIARGLIGKLEGDEVSIH
TPGGVKEFEIEQVQYL
>PBPRA0466 PSPTO300, putative xylose operon regulatory protein
MNKRFRITLLFNANKVYDRQVIEGVGEYLQASQCDWDIYLEEEFTTHIEN
FHAWKGDGVIADFDNPDIMALLEHSDIPVVGVGGSYENSQDYPDVPYVAT
DNQALIELAFQHLRNKGLENFAFYGMPQDSWKRWAHEREKAFKHVVQSAG
YSCSVYRGNDTSPQTWQYDMNRLADWLQRLSTPIGIIAVTDSRARHLLQV
CEHLNIMVPDKVSVIGIDNEELARYLTASITELCRARL
>PBPRA0465 RB1454, hypothetical protein
MRILVPPTQVFERQRTDFQAIKDTYVIQAMRFTRLNACKGIKVDQVLSYV
GISRSNMEARFKEERGHSIHPEIHNSKLKRAGCLLKTTSLPIVEIHICVD
TLPCNTCIPFLKRT
>PBPRA0481 SO0916, hypothetical transcriptional regulator, MarR family
MYRNYIYLRDHAMQPEELRQLSRQLVRQLGLLDNHCGLLKLTPVQAHTLI
ELEYAPCTVNQMADKLKVDKSNASRTLAVLLNLGLVESTPNPDDKRSQLF
RLTLLGQQTLTSLHTQLNLHVQTVLDQMDSDEISQLKSSLTRYNKAIHTA
HKQHGFTLRPLTPLDNASIAAIIRKVSAEYGLTADKGYGVADPTLDSMSE
VYQPDNCQYWVIEKDHRVLGGGGIAALSNIDGLCELQKMYFLNELRGKGL
ARSLAVKALKFAREYGYNGCYLETTENLTEAIALYESLGFVHIPHAMGDT
GHDACEVRMLKTF
>PBPRA0547 SO3988, putative aerobic respiration control protein FexA
MQTPHILIVEDEHVTRNTLKSIFEAEGYTVFEANDGAEMHQMLSEHPVHL
VIMDINLPGKNGLLLARELREQGDMALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLTRAMNQGLPTEDKKLVERYEFNGWSLEINSRS
LVSPSGDQFKLPRSEFRALLHFCENPGKIQTRGDLLKKMTGRELKPHDRT
VDVTIRRIRKHFESVADTPEIVATIHGEGYRFCGDLNEE
>PBPRA0562 STY2836, putative ATP-dependent RNA helicase SrmB
MKDFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGT
GKTAAFLLPMIQHLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKN
THLKIFTITGGISYDDHAELLGKTQDIVVATPGRLMEYVESERFDCRAIE
CLILDEADRMLDMGFTKIVERINHECRWRRQSLLFSATLEGKGVREFSET
ILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQILKHQAERSIV
FVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNILI
ATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVE
AHDQAMIERVSRYMEEEVPERFINGLRPASKKAKTIKKKKVKIDKKLKVA
KQKKAAKKHKKASENKPEA
>PBPRA0499 STY3156, putative transcription regulator LacI family
MARIKDVALLAGVNRSTVSRIINGEGKFRADTKRKVEQAMADLNYRPSAI
ARSLATASSNMTGLLVTDYTGGFFGEMMNQVQTELDLHKKFLITAQGHHS
AEGERDAICRFHALRCDGYVLNSRYLSDDELRLLAKEPTPFVLLDRSVEG
LESRCITFDHSLAGQMAVDHLINQGHRKIACITGLLNRTNSRQRYQGYLN
ALSTADITVDLTLCAEGNYGRESGYLAAKKLYHSHPDLTALFFM
>PBPRA0611 T3205, putative transcription pausing L factor
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAID
RKTGQVATFRRWLAVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESV
TFDRITTQTAKQVIVQKVREAEREQIVEQFMDNEGELITGIVKKVNRDAV
IIDLGNNAEAVIQRDDQLPRENFRSGDRIRGLLYAVRPEARGFQLFMTRS
KAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTNDKRIDPVGA
CVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDE
DSHTMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHKE
EAQVSIDTFTKYLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDE
DAINELRKCAKEALTTLALAQEESFEGVEPAADLLGLDGLERELAFRLAA
KGICTLEDLADQGTDDLLDLEEMGEAKAGELIMAARNICWFSDEA
>PBPRA0420 VC2489, putative transcriptional regulator
MAGKAGRPTGVSDARQRLIHQARLLFVALPYSKVSTRMIATRADVNVALI
RYYFGNKAGLFETMLRETVEPIQSQFAKVLNKGDIESIGELMRTYYRIMA
PNPDLPKLNSRAMMMEPGALQRQTIENMFSNIAYSATELMFKPMKLKGQL
REGINPDKARMTFISMMVFPFVAPPAMLELQGIKLDEAYLMELADHNVRV
LTQGILAETEDSSA
>PBPRA0427 YGAE, putative LuxZ
MSSPTLTNKIMEVIRQDILLGELSPGQKLVVADLKARYNVGASPIREALV
QLSWKKYVKFAPQKGCWVAPISVDELEDLFETNLILSRVLLERAIINGDE
AWELNILTTYHKLSKINPAASDVDFTEWEDRHSEFHLALLAGSQSPVMLE
LYREVYEQIERYRHVWVSRNRHYEERYHDNGEHDAMMKAVLGRDTQRALD
LLNNHFKRAVEIIKAYI