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# Hahella chejuensis KCTC 2396, KCTC 2396

>HCH_01562 Transcriptional regulator
MLRELKTFLEVTRCGTFAAAGDRIGLTQSAVSAQMQRLEEALGYPLFERA
GRSAQLTAEGRAAIGRAEQILDLFGGMCEGTESRPIRGEVRLGAVSTAQA
GLLPVTMSHLRRAGSEISLRIIPGSSLQLLALVDSGEIDAAILVEPPFAL
PRELNWSPLANERYALIAPHDAHESDWRALITAHRFIRYDRSAFGGRLVE
RFLRRHRLHVNDCAEMDELTGIVKMVEEGLGVALLPISPGLDVSQVRVFE
LKGDVFYRRIGVIERSEPRSAVFSLFSRALGEAAHELYIATSSLG
>HCH_06316 Transcriptional regulator
MATRFGFDLRALSIFAHVAKTGNMSHSAEQLGMTQSSISQALSKLEESLQ
TRLFDRTVRPMELTSAGRFLYDRSTRLLQEAEQTSQAILQSDFAQLRLIK
IALTDSIVTSVGRSLLDAVKKRAHDWSISTGLSHLHGHSLLSRNTDIIIS
DDALEDYADLSRYRILREPFILALPNDYDGPVDDLNKLASELDFVRYGAH
SLIARGIERHLRAVRVEAPDRLQLDNSYAIVSAVSAGMGWTITTPLCLFQ
SGIKQHHVQIRRLPGEQLFRSITLTARKGELGDLPREVAQDCIAILKQDF
LALMATEHPWMMEYLTLGD
>HCH_01132 AraC-type DNA-binding domain-containing protein
MSFVKQGVEPSIHCSFVFSYLAYLRESRLDEQALVDAVKGLREVLDERCW
VPARMLNELTARALSETRDPYMGLRFGAEIDASTYSILGYIVSSAPSVEE
ALSVLRKAQRAVSSIGELQLIVEEDAVTCVFKDNWPRKLMLDHLVEAFIS
CWKALGSRISGIKARATLVTFKHAPVGDPVQYEKELGCRVSFHSPVDSVR
FSLQGVSHETLCVGDSLVFEALKERLLKMLGPGSRNISAQVNRVLVELPG
ELFPSMEMVASRLGMEPIELGKQLKSEHASFRTLLDRRKFMQTLALMQTT
KLDLAAIAVQVGFSEQSALSRAFQRWTGMPPAQYREMLQRQEHWLRRQRT
NGLAGAPLADVPLNSLRNEKAKFMASALV
>HCH_01645 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
MESTHCADVRALLVDDHPIVIDALSTSLLALKLCNWIDKANTLAEAKEKL
ANDADFSLVLLDLHLSDAEGIHAMMTMREAYPDIPIIIFSGDDSTDTIAK
AFEYGVRGYVPKNSPVEVVVSAVKVVLAGSCYIPPHAIRMLGFEPAAGTV
AIGNTAVETRPYFSPRQEQVFHYLLEGMPNKVIAARLDMAEGTVKTHMNT
IFRALGVRNRAQAILKARQLGVI
>HCH_03203 predicted transcriptional regulator
MKRDIFQAIADPTRRAIMVLIAAQGMTPNAIADHFEMTRQATSKHIQILN
ECGLVSQQKQGREIFYQLKLEKMQEIDIWLEQFRKLWEDRFSQLDALLNT
LKSGDKEQ
>HCH_05136 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein
MEIKYDETNQLVSQARSGCPNSLEMLFREQRPKLHRFIRNRVSRQEDIED
LVQDTFLWAQQGLSSFEGKSRFSTWILGIANNLIRNHYNRSPEYKYDFVS
DDVLDQAHNESDTPEANLQQEHRIKQLEYSIRMLPKDVQQIVEWVAIENY
PYQRVADELGITVPSVKSRLFRARTSLKESVMPLM
>HCH_03066 Transcriptional regulator
MFRNNEQKALPYRMLVFNEVVKCGSFTGAAENLGHTRSAISTYISQLETL
VGTKLLSRSTRRLHLTPAGRQFALRCEQMAETLQLAVDELQDFEQEPQGR
IAITAPHAFESLLVESVIADLCRQYPKLTADVVFSDQKLDLLEHKLDMAI
TVGPQKDSDYHALKLGVLRSFLVASQAYQDTHGKPDPRQLDNHTLILLPW
QHKASLYSNGEQVPLQAGKAMHVNTLPAAINYARHGLGLLLAPSIFVADA
IGRGELERVAPDWQAEDRDVYALHSFGKRLPFILRQATERLKWKLESLG
>HCH_06963 Transcriptional regulator of sugar metabolism
MSADKPLNARQTAILKLIEKNGVATIDELVEAFDVTPQTLRRDLNLLADY
NLIQRFHGGATSITSTENLSYQDRQIRNLEEKEAIAREIALHVPDHSSMF
INIGTTTETIARALMNHKGLQVVTNNLHVASMMSQKEDFRVIVTSGEVRA
RDGGIVGEATMDFVQQFRLDFGIIGISAIDEDGALLDYDYREVRVAQAII
QQSRHVFLAADHSKFGRRAMVRLGSITQANMFFTDQRPSEEIETMMKNHD
VRLHICTP
>HCH_05087 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
MSISASSAVFVPNHLRVLVIDDHQLVIDGLRVALTAQQVPIDLVNAFNCQ
AAQTLLETDQSFDLILLDLSLPDGRGFKFLRYLTCKRIYIPVAILSASED
IEDVELSLRSGAIGFISKSSSAMEINLAIRQILNGKQYVPNFYIHRNQTP
VQDSQLRLDSITPRQMEVLQLLAKGLPNKRICSELSLTEDTVKSHLKALF
MHLNVHNRTECVSVATRLHLVDA
>HCH_02337 Cold shock protein
MPQGKVKWFNNAKGYGFIIADEGNGDLCKEDLFVHFSSIQMEGYKTLKAG
QAVNFDAQPSGKGFHAVNIVPLESEPEKSSKNPETETAEGPESAAKTESV
ENKSKENSRTPMAASA
>HCH_06745 Transcriptional regulator
MDIKSLRYFYEVARLGSFTRAAESLGVAQPAVSMALRKLETELTLTLLHR
NDRRISLTDEGAILYRHAEKILRAADDAALEMSELKGLTRGEVRVGVPSM
LGSFYFPPILMAFRHRYPTLNLSVIEGGTWRLQQMLEQGELDLGVIVAEF
VPEELEARPFLREQMLVTVSQEHPFAKQESVTPEQFFREELVMFKEGYFH
RKVVDRLAKAAGVTPNIGFETNLLPLIKSIIKQGFGISTLLGMVVEENES
LVTIPFDPPIWLDLSIAWRRNGYLSRANQAFVAFLLEHSGC
>HCH_05817 Serine/threonine protein kinase
MIFASDLSLSVDQHSIAGVKPRNEDCIGVRIPDRETLQLKGAVAVIADGV
SAAEAGKEASEACVTNFLSDYFCTPDSWSVKNAAQKVLQALNRWLYGQSL
RTLNDDKGYVCTLSILVLKSTQAHIFHVGDSRIYLYRNGELEQVTTDHTA
RVDAERTYLARAMGFSPNLDIDYRVLEVQAGDLFLLSTDGLHDFVPHSQL
RERLREAAQTPFQGLAADLLQTALQAGSDDNLSCQILRVDSLGLRDADSC
CRELSRLPFPPPLEVGQSLDGYRVDRILHESARSQVYQVTDMETGERAVM
KTPSLNFVDDPAYIERFTMEEWIARRVHNPHVAGLVPCKRARSCLYYLTE
FVPGAPLSRWIRDNSRSDIHRVTRILEQIVKGVRALHRKETLHQDIKPDN
LLIGNDDHVTLVDFGSCRIPGVEEMYLPIERERALGTASYSAPEYVLGAK
ATTRSELFSVAVIGYEMLTGHSPYGEAYEKAASPTALAKLKYTPAYHHNP
MVPVWMDGALKKALQLDPRRRYDSFSEWLQDMTYPNSRLMPDSALPIVER
NPLAFWRTLSGILLLTQLATLLWLLHLLR
>HCH_04118 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MPRVLLVEDDEKLSSLICKYLQQNGFETEVVCDGGLAVDAILASQPEIVI
LDLMLPGKDGLTICREIRAHYHGRILFLTASEDDMDHVAGVELGADDFVV
KPIQARVLLARLRMLLRRSEISGAVEPHERSHLSSGNTMTFGRLVLHLPK
RAATFGGESVALTTGEFDVLWLLASHAEEVVSRDYLYKNLRGLDYDGLDR
TIDGKIATLRKKLGDNASLSTRIITVRGQGYLFVPDSWD
>HCH_03182 AraC-type DNA-binding domain-containing protein
MNDSVHYQRLPHIPGLVLGAGRFAKFDFGRHYHLDYHIGIVTEGVQRQQY
KGETQVLGPGFISLMPPGEIHDGACDSDAYTLRTFRVSQKLMLEASAELS
DAHTGPELLGNVFEDPQTAARLFRLHNVMCSEAVSTLAIQSEWLSVLDAL
FTQTGAIRSGRDPNALSHAQWRRMQDYCLANLSEKITLDDLATLCGLGRF
LFLRQFKRTVGMTPHAWLLRLRLEQACALLTQGSLSVAHIAQRVGFYDQS
HFNRAFKQAFGVAPSGY
>HCH_06085 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MTHKNKHIVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGETLFKLLEGVTP
DLIILDIMLPGDDGFTICQRLRKSSTVPIIMLTANADDTDRIVGLEMGAD
DYIAKPFNPRELLARMKAILRRVQPKQSAPSGQPKIYRFGNLVLDTTSRM
LVQPNGDKSAISGADYTLLCLFLEKGNEVLSRDEISDVLHGRECSPLDRS
IDVHMSRLRQRLGDDAKNPTLIKTVRGSGYVLAVPVEREYGD
>HCH_06293 Transcriptional regulator
MDRIDALQVFARVAETGSFTRAADLCELPRSTVSSVVQKLEASLGARLLH
RTTRRVSLTHDGAALLERCRHLLTEIEEIESMFREPGARVSGKLKVDVPS
RFGSRVIAPALPDFFERYPEIELELGATDRTVDLIQEGVDCVVRVGDPGS
ASLVARPLGKMELVNCASPAYLARYGAPQTPDDLSEHRAVRFASPNTGRA
EPWEYVQDGELHYVEMRSWVTVNNAETYVACALAGMGLLQAPEYDVRHLL
QSGDLVEVLPNARAEAMQIYAMYPHRRQLSRRVRVFIDWVGELVKTVCV
>HCH_06957 Transcriptional regulator
MARASKRDFIIETATGIFLEQGFKGTSIDMVVNACKVSKPTVYNHFPDKS
QLIDAVIDAWLVAQRPIMPECNDEAALWRELKREWWRGESVAMYRLIIGE
GWRFETTAQRFWQEYDAKWREIVDKYGKNHQLSADDIALLQARVSHELWT
RLSHGGEGS
>HCH_06010 Factor for inversion stimulation Fis, transcriptional activator
MTTESIVTTETGSGANKLLTVEQSATQTMTLRDSVDQALANYFAQLDGAP
VKDVYQMVLSEVEAPLLEQVLKYTRNNQTKASVLLGLNRGTLRKKLKQYD
LL
>HCH_01283 Transcriptional regulator
MDRLTAMQVFAEVAARKSFTAAADNLDMSRAMTTRYVNELESWLGARLLN
RSTRRISLTEAGEACLLRCRQILDLTDDVEAVAGKRETEPYGLIRITTSV
AFGQVHLAPVVAEYLKRYPKTRVDMQLLDRSVNLIEERIDLAIRTTNDLD
PNLIARKLTDCRSAICASPQYLKERGAPKTPRELSEHNCLTYSHFGKSQW
RFTHKKTGAVEAAEVTGNLSANEVLALTNACIAGAGIAMLPTYMVADYVR
RGELSALLTDWEALRLGMFGVYQSRKHMPATLRTLLDFLVERFGDAPPWN
DDILG
>HCH_00636 Serine/threonine protein kinase
MTAIAKFTTDTPAPAFFEDATGYNSADSMLGRVLKGMYRLEYLLADGGMS
RVYVARQLSLDRLVVVKVLRSGAPNVGYIQLFYREARIASQLNHPNVMQV
FDFGATEDNMLYLVAEFLQGEVLSDLMEKHGNGLPLENVVWLIEQMAAGL
QAAHQLNIVHRDLKPGNIMVAKVSGNHSVAKLLDFGISKPLEEQDLQYTQ
MGLVVGTPGYLAPEQIDSSKDIDGRADIYALGAVLYYCITGERPFNGETH
HQIMAQQRKYLPQPLSDKELADPRNKILEPVITKAMAIAPADRYESCLDM
VRDLQLRARNAVRNSNDHGLKLVNLTTYAFIFTGELAEGAERAVVLKKLK
NKFSISDAGLKKMFSGKRIIVRKNLNLSQAKKFQSAFKSAGAIGYVEDMN
PATLVDPAHSREERAFSQPIEVDSTTLNKSLHLTRNGTSGSTSQSHSGIA
TQLPQAQESKKRTEFRIPAGVKYFCAGAAIVLGLLSASLLSPQVRYQLSD
LTAGLNGWSTPRGVNENEIRIGMSAPISEDGQAQGSSARRGVQTRFEEIN
ASGGIHGRMLTLQAFDDANQPLKSRINMQTLLSQNGSFALIGNIGAPDVL
LPAIMEQQTLVIGVQSGAAALRRNPPDRYVFNFRVGYADETFAIVRHFVD
IQEVEPSRIAVLYEDTASGRDGLAGMERALAFYNVHARDIPQFTYQPYVE
QIEGPARLILEEQSELQALVIIGNHSATAKTISRIRKAGWEGRIAVVSSA
SANALAQDLKSLEAPHTAGIIATQATPPVHSYATGVLRHRQAMRRYFPDH
KPDAQSLEGYLAASLLTEALQRAGRNFDTETMVSTLENLKDIDLGIGELI
SFSSIDHQASENVWALQLNRTGAFEPLTLTSRSW
>HCH_04870 Transcriptional regulator
MDRIQAMRAFVATVDHGSFAKAADILDLSRPVLTRLVSGLEDSLGAKLLH
RTTRRLSLTESGERFLEACRNVFSLLDEAESDLSQQTQCPKGVLRLSAPM
AFSLLHLEPVIAEFMSTYPSIEVDMELADRRVDLVEEAFDLSIRIAHELE
PGLIARRIGGTALVTCASPEYLKLNGLPESPDDLRTHECMGFSLARRNSW
SFLENDKVRYVDVRGRFKSNNGIFLAKLAESGKGIVQLPCFIVNEALREK
RLVTVLKDYQPPNLDIYCVYQSREYLPQKVRLFIDFMSEYFSCNCQKIVT
LKSA
>HCH_06999 Superfamily II DNA/RNA helicase, SNF2 family
MLVKESLIAKELGHTYFERGVKYFKQKRVTVVEYGEDHASATVRGSGDSA
YQVLVTLENGAYGLRIEGECSCPIGYNCKHVAATLLAVNERSPVAAQKDT
RSDHIPSHHPDETLDHHVRRWLDQLVDTTTEKATPDSATQVSVLFLLTRN
QMNGNVCVNVIQARILKSGAYSTRTQRYNISAAFNQSKPAAFLTKADLAI
FKRLLWSQWGSDLPLTEESGAEALQRILATERAYWETPQGPKLFKGAPAQ
AEFEWRVDREGGQTLEMVPSHLIMVATDPIYYINTHTGECGQLHSELPPS
MLMTLNRAPRLSPVQAGQVRSLLEQRLPGARLPKPKEIAVEKDTKVKPQV
HLTLGAASPSQAGYFPYRTSQADIPYARLEFSYRDIRVSYDSDIQQVTTV
KDNTHLIIPRDFLVEETALRKLRTLDMRPLNTIETYPLVDEAHQMDLSFP
SFGEWHGFAQYGIPLLEKQGWHITIEEDFPFQYINTDVEELSWYSSLDES
DSDWFDFDLGVEVDGERINLLPVLCNLIKDAPEEWELQTLADYPGDSDVL
LQVAPGRWIKLDVERVRNLLGSLIELYDHDPLVNDKFRLKRGQVGQLLAL
NEAMASVSLRWLGADKLTRLIVRLKQQEQMSHVFPPDWFNATLRDYQQEG
LNWLGFLREIEMGGILADDMGLGKTIQTLALLSVEKAQGRMDRPCLIVAP
TSLMSNWRKEAEKFAPGLKVLVLHGSQRAERFERIADNDLVLTTYPLLPR
DSEYLLKQDYHYLILDEAQTIKNPKAQATQLVHRLEARHRLCLTGTPMEN
HLGELWSLFNFLTPGLLGDDRKFKTLFRTPIEKQGDLERQRLLSRRIKPF
MLRRTKQEVATELPEKTEIQRTVLLEGKQRDLYESIRVAMDKKIRDAIAK
KGVKRSHIEILDALLKLRQVCCDPSLLKLDSARKVKSSAKLDTLMSMLPS
LLEEGRKILLFSQFTSMLGLIEAQLDKAGIEYVKLTGATKDRDTPVNRFQ
NGEVSLFLISLKAGGVGLNLTAADTVIHYDPWWNPAVENQATDRAYRIGQ
DKPVFVYKLITEGTVEEKIVELQKQKQALADNLLADKAEKFTFDEEELRK
LFAPVE
>HCH_05571 Cold shock protein
MSDTVKGTVKWFNETKGFGFIQQESGPDVFAHFSAIVSNGFKTLTEGQQV
EFTVAKGPKGPQAENIVCL
>HCH_06501 AraC-type DNA-binding domain-containing protein
MQGVELLSAAFNHFSFSKHWHDQLAVGVILQGAEGLDYRGGKAVIPRGQI
VAINPAEPHTGFAASEGGWRYRMFYFEEAILRETLRENRNGFAPFLRGPV
IDDPATFSLLLELHQALEAESFSLAQDSLLTAALHQLFQRHGDGGEVETK
GAQDLQGCLRIRDYLHDNWRRNVALEELAGLTGMSRFQLIRAFKQRFALT
PHQFLILLKTREAKRLLESGMEPLTAALECGFFDQSHLHRNFKRVYGVTP
GRFAKRNFIQEPQSPFVID
>HCH_06129 Transcriptional regulator
MKIVRRPDLALKRYVLIHGLVKLMSRLVHQLKSLWVLDVVLRSGSFTAAA
ERLSVTQSAVSQHIKTLEEEFGPLFERGARSLTPTQTALRLGPHLRKGFD
HLEEGVEAIRRCCNQITVSVLPSFASAWLIPRLHKFNAEFPDVDIRIAMS
NEVVDFRDVDVDAGIRFSSRTFPELIVKDLAEEEIFLAASPELAKGIGSD
FRVLKDHVLVDSDAPDSFNWSAWKKAAGHPDLEPRRRIIISDSSQVIRLA
LAGQAVALVRRILVQEELSAGRLVRLFDFSLKIDQRYLLVMPTRSRGNAA
LRHFTQWLQQEIEAASAPQQGGA
>HCH_03343 probable DNA-binding protein containing LysTr domain
MTKSIATGGLSAVESHYIRSLHEQAQRNFRQSKELIADAYLFDAVNRLEK
NLNAIVFVQSAPPYCTVYDNCGRKDGFDVRANLSSLGMYFDDSHLIQIHR
SYMINPLFAESVARHERDYQLVLKDASGKEITLPVARARVKVLRQKLAHL
FT
>HCH_01952 Serine/threonine protein kinase
MAAKRHSVFNNVRRLLARAYSLRTVVVVAACLIVVAPQLARHLPSLDTWL
YNAAWSVNKNTPVKPADDVPLAQRLMPGLAPTPIFFLDPYLASAKLDAAS
QIETNAFRVAPGLQTPPWFFLAEKALILVCMLLLVAALPRMTWPAGFFTV
AVFVVSLAVIQIGMQVAQSRWLPLGVTIQFLVAGYLVMAFWLKQQKQIEA
LRDARQDVSLRLGKMQLKQGMLEETLTTLRPCLSREDACAIVYDVAVQQE
KKRQYDAAANTYLSIAAVNPKFRDAAERAKKLAKFETMQQAGDTEWAATQ
TLATPADISRPVLGRYEIVRELGRGAMGVVYLGRDPKISRQVAVKTLNYR
QFDSHRLTDLKARFFREAEAAGRLDHPNIVTVYDVGEEADLAFIAMDYIQ
GKSLNVYAKPGRLLSVEVVYMLMAKVADALEYAHQKNIVHRDIKPANIIF
NPDNQQVKVTDFGIARISDKSKTRTGQMLGSPLYMSPEQLKGGKVNGVSD
IFSLGVTFYQLLTGEPPFNADSLPELTQQILNKKHRSVRELRPELPASAV
RITNKALQKDPAKRYANAGEMAEQLRRCCMNEFGKTALC
>HCH_04721 Negative regulator of flagellin synthesis (anti-sigma28 factor)
MNIKGVGSPPVNDIKSRENLQKTEKVDVDAGKNAAAPEKSGDSGDKVVLS
SQAQNIRKVEQQLAKLPDVDNERVEKIKKALADGSYQINSRSVAEKLLNF
EQDF
>HCH_06751 conserved hypothetical protein
MKMKAGDRLQGLRELIGLTQREFAELLGIDYFRLKNIEQQKARMAEDEFA
QVGLLIPEMLHWVACESDISLSALQNSEAKLCRLIAAKIEAGQVPEGYML
EEKIK
>HCH_04887 Serine/threonine protein kinase
MDVSRWNQIQELFEAIADLSTEEQRAYLDIHCQDNELKKEVLQLVQADEH
VDDILPKQYDIASAEATLVLPKMHPGVMVGPYKIIRKIGEGGMGWVYKAE
DTRLERYVALKCLAPEVATDERVRFRLMQEAKAISRLDHPNVCVIHDVGA
MSDGGMYIAMQYYSGETLENALTKGALAPDQVVRIAKQIAYGLQAAHQRD
IIHRDIKPANILLSEDGIVKILDFGIAKLSGVDITLGGARMGTLRYMSPE
QLQGRDMGLQTDVWSVATLIYEMLTGREMFDGEKSSTVLHAVMHEEPDYS
LAVFQEYPLFKRLLTAMLHKKPEKRLDSMGKVLQWLTTIQPIAQAGAKNR
ARQDQRIENQEAVVKEELTDLYLLRLAAALTAHVGPAAPKLIQRYASTSD
NRESLINSLVGHIKPQYRQIVSQQLKEIAL
>HCH_04713 Transcriptional regulator
MCNKYIGCFLSHSLEKPMNVSLRQLRVFEATARLGRLTLAAEEQCLSQSA
ASQSIREMEKALGYNVLIKVGRELELSDAGRRVLPRVRRILSLVDGLALP
DIEKVAGPLRVAASVTIASYLLPSLLAEFVKRYPEVEPDVQIHNTEAVLA
LLEKGRAHIGLIEGPALHPTLHIAPWLADRLAIFCAAGHPLTRVGNIGAE
ALEQFPWIVRETGSGTRAVFDAAMQAMGVRPRISFALSRQEAIKQSVRAG
LGVGCLSRLSIVDEVPERLLVELDTPLNLTRQFSWVCAPDNRESTVVKAF
IDLLQEREREANRHPFEAGE
>HCH_10030 predicted transcriptional regulator
MKPNNDPRYELLISLLKKARKDLGMNQEELSSRLQKYKVFVTRYESGDRK
LDLFEVMAICQVLSVNIHELIKRFDKDMPALLEHDERYLDGFCNGFLLAK
GYEVSKESVDGCSKE
>HCH_02466 Transcriptional regulator
MPKKSKVTITDIARRVNMTTITVSRALTKPELVKKETLDRILEVARELNY
VPNAFARNLKGSKSRLIGIITASLDNPFYSEMIKAISRAAKKRNYSIMLF
DTDGSPELENKAMETMLSYQVDGIILSVVSDYDEYHPQYLEQLIHANIPV
VQVDRRLSGAPFPGVYLDNLASGYKGGRYVLEQGHRHILALAGPEQSNIS
KQRLEGLKQALAECKEPTRLEVLYGDYTMQPAFENATAYFKQHKQSPDAV
FGLNILITLGALKALRKLGNKRHNPAVFSIDEAPYADIFDFNIPCVHHDT
YQMGHSAINMLLDRIENPGFEGSDIIIEGDLRASV
>HCH_03119 Transcriptional regulator
MNLRGVDLNLLVILDALLDERHVTRAAKRLHLSQPATSSALERCRHLFGD
PLLIRGRGEMRLSAKAESLREPIKALLTQAERVINQADTPLAELRQTIRI
LMADFPVSALLGPLHQRLITSAPNLDLIVQPWHGAKSALEQLAKGEADLA
VSVFPNVGASFRCVELLYEDYCVLMRKDHPAAQNFNLQQWLAYPHVLVSG
RGDADSPVDQTLQARGLRRRVGLVVPYFQMAPDLIALLPTHCVPQDTTKF
TVFPPPIPVEGFPLHLAWHVRKHGDQAVSHVVEVIREVTGG
>HCH_01849 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MRLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIIL
DIMLPHMNGFELLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLV
KPFDFDELLARIEALLRRRAGCASNLLEIGELTINLHSKQVSVSGVPVSL
PPREYALLECLALNRHRVVSRQEIEHKIYDDKIEPMSNVVDSAISSLRKM
IDHKDRPSFILTRRGHGYQIRQS
>HCH_01281 AraC-type DNA-binding domain-containing protein
MRKSFTNSVDLTLSRSSAIRLDYLRLNEDLALARWANRQDRVRYEMVGHH
TLSIYLRGGTETCRIDAPERCGGPGKICLMPAEHDSTWQVSGPLEFAHLY
FSEASFKQMALSLWDMDPRRVELPDLAYADDPELVRLGRLAALQPEGLMG
ADNLSLQQISYEMMAHVLSRYAVFRKPEAAYRGGLAPATKRKVLEYIQAH
FGEDLSLERLALVAGLSPFHFARMFKVTMAEAPHQYLRRLRINAAKELLG
KGMDLSEAALICGFANQSHFTRAFKQVAGVTPGSYRRQTRLP
>HCH_05540 probable two-component response regulator
MTLSVRINRILLAEESPTLCARLRRTLVQMAPHADIHTTASVEQTRREIL
EWRPVLAVIDFVLEGGNIVPLLGDAELIPAAPFVLGIAPDASRADTVQAM
RCGFSYVIDKPFDLGTFEQAVLQTVSSPMSLASSINRIVSPLLYSDDDEL
DLKKLTAEIETLIFKMAIAITGSKKGLGRLLGISRQLVQYHLKKL
>HCH_03619 Transcriptional regulator
MNITERDFRGVDLNLLVTLLVLLRERSVTRAAEKMHLGQPAVSGALSRLR
ELFDDPILVRTAQGMTPTVKALQLEAELLPALGKIHSALFEPSTFDPATS
EGVFTVGMADWVEVWLGPRLIAKLHEMAPSIRLAIKSVDPFQGPAMLEQN
GMDLGVSCFIDGGPSWMLRKRLCSMGFLCVYDPSLVSITEPLTLEQYVSH
PHLMVTYKGAFESNVDIALAEKGMRRTVQFALPRFSTLPPILKRIPVLAT
VPKVVASCMCAASGLRAAAPPLPLKETSVDLVWRATRDKDPALRWLMAVI
EACLQEAMALSNNL
>HCH_04155 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein
MNSIQEPSLKTATDTDWSVELSPLLRRIVDQDRAALKRLYDLTGARLMGV
AMRILQDEGEAADLLQEVYMKLWRQASQYSGAGSAWGWLCVLTRNAALDK
LKSRQRKREDLMDDVEPLMADLAGEGCGLADQEGMRQCLEKLNEEPRKAI
LLSYIHGYSHGELETRLERPLGTIKAWIRRGLQELKQCLEA
>HCH_02426 Transcriptional regulator
MDLLDLKTFMAIADTGSFSQAAELLHVTQPAVSKRLANLEQHFATPLIER
LPRKAVLTDAGKLLRQRAATILREVDNTQAEILNLQSSVTGVLHLATSHH
IGLHRLPKEIRRFSRAHPEAEFDLQFLASEDAEQALLAGSVQLALVTLPE
QVKAPFTAHEFWLDRLVFVAEPGHPLTHRSDLQLSDLAEYRALLPAPHTV
TFQLISSLFAGQSLPLATSMPTNYLETIKMMVSVGLGWGVLPDSMLDDSV
AELGLETNLTRKLGVIYDSRRTLSRVAEAFLQQLQGEAPIQAS
>HCH_00419 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
MIRLVLVDDHILVLEGIRARLEQEPDIDVVAQATDGKQAIDAVAEHQPDV
VMMDVSMPRMNGIDATEYMAQHFPDTRVLILSMHNNKEYVSQILHKGAKG
YILKDVSVDEMIRAIRTVYEGGTYISSGASAALFSQPQLRGESSASLTHR
EASVLKKVAEGKSNKAIAEELAISVRTVETHRQNIKAKLGLSSTAELTKY
AIKHGLM
>HCH_03168 Transcriptional regulator
MSTAAVYKTRTQMVADILRKKILSGEIVAGEPLRQDAIAKEFKVSRIPVR
EALLQLEAQGLVCFEPHKGATATELRPSEIRELFELRALIECHVLEQAID
NMTDQDLAAAEKILKAFEEAVESGDQVESWSELNYELHAALYQPANLPQA
MEVVRSLNIKSDRYIRLQLLFTTGIEKAEREHADLLEFCRQRDKKAASAL
LKKHILEAGQAIHDLLSEQAGGASH
>HCH_04055 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
MHNVAILAFEDVAFFELGCAVELFALPRPGVEDWYQCDLVSFTPGPLTTT
SGFQICARQVDNLDAFSTLVIPSWPTQLTDIPVPIAAAVTRFYEQGKRVL
SLCSGAFLLAELGLLEGRQATTHWRYGEKFKSRYPGVDYQDDVLYVYDGQ
IGCSAGSSAAIDLCLEVIRDDYGYKVANRMARGMVLSAHRKGGQAQFAET
PVPENNSQFNNAIDWALQNLDKTIDINLFAQKASMSRRTFDRKFRADFNI
TPKEWLTHQRLNLAKEILENQNYSIEKVAALSGFDNAATMRHHFRKEFGI
TPTLHRKNFSPLVNGIMVGDSTP
>HCH_00946 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MFFSVLVEVEMQRKARILIVEDETAIRTGLVDVFVYHGYDVDFAVDGDDG
LNKSLNGAYDLILLDVMLPGKNGYEICEAVRLKDRDQPIIMLTAKSSDED
VIHGLSLGADDYVAKPFSVAQLVLRVQAVLRRSRSASLDDAHICLLGGLE
IDTLNLSCQHKGEDVAFTRREMDVLQYLHEHSERPVSREELLNKVWGYAR
DLDIETRTVDIHIAKLRRKIEADPKQPQRLVTVRGGGYRLMTAS
>HCH_06805 Histone acetyltransferase HPA2/related acetyltransferase
MNVVLRPATAADADTVTDIMLASRKKFLAYAPMAHSEREVRGWVRYLLLP
RESVTLAVADDRIAGFLSLDKGDRLTWLTQLYLAPDYVGCGIGSQLLTHA
LTLASKPVRLHCFQQNQDARRFYERHGFVAVRFSDGSGNEERCPDVLYEL
T
>HCH_05530 Transcriptional regulator
MDKQLLADLLYLEAIAEQQSFTAAASAMGVSQSAISQSIKRMETQLGFPL
LERTTRRMRFTPQGERLLLGVRKALGEIKGALDQIHSEREEGVLRVETFA
TFGMYWLLPRLPEFHKLHPGIRVYLNTEESIRPAGSSDADVMLRFASAPP
SGFYSQALGTEQIFPVCSPLLFQQYPDLSGAQMLQQATLLATANDGSDNC
MKSWEQWSQRAGVNVSKDIIYFSRTELVLQAAQAGQGVALGRTYIVADAI
ANGSLIALDADPIPAPFTYYFATPYERADWPKVKKFRDWLMGMLVA
>HCH_06522 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
MNIGLLLYPGCIASGLLALADIFKAVNLRLHKPQFEVNWLTLSGETFEVG
NGVSIATNKLSDANLGALVVPGAWRDATTVVTAQDNALVAALSKLPDQVM
LLSYCTGVCLVAEAGKLTGQAATTTWWLAETAADRFPGVRWKPASTVVMN
TRNATAAGVNGYLPLGMALIEQHCGRRVAEEIQKYMVLPRFKERHTPFQG
IPGLLQQGPFMRAVALWVEQCPAEALTTEALADHLNLSSRTLARRIKRET
GYSSGQLMRLIKHNQVSDELIATSKSIYRISDELGFADDATLRRSFKQLT
GVTPSEYRQRFE
>HCH_00064 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MPQASILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDL
ILLDLMLPGLDGLSVCREARRFTDAPIIMVTARVEEIDRLLGLELGADDY
VCKPFSPREVVARVKAILRRVRGAPVEERALMLDPSRYRAVLRGKPLELT
AIEFQLLKILADEPGRIFSRSQLMDGIYQDHRIVSDRTVDSHIKKLRKKM
TELFPDQDYIHSVYGLGYKYEG
>HCH_01993 Histone acetyltransferase HPA2/related acetyltransferase
MRIRPAAMEDAPAIAVIHVAAWREAYRGLMSSEFLASLSVEKRTQQWTAA
LAQDSPILRLVIEHEGHVAGFCSSGPFRDEQLAGEEGVELYSINIDPNYW
RHGLGKGLLEYVSDYYLQKKAKAIYLWVLKGNLRAMEFYKNLGFLPDGRS
KVDCGHAGEPLHELLFVRRLSI
>HCH_04628 predicted transcriptional regulator
MKQEQAVNQGSDRSELIAVLKTALKAKGLTYRDIAEKLGVSEQSVKRLFR
DQDCALSRLEKICEAIGVSLLDLMLVARHRQEPLTRITPEQEGFLASHIS
HFNILFLLTQGYSVTDIQTRHRLSEAQMYAFLRALEVWRFLDIKQGLEIR
LRVEGHLSFPLGGALHEHIKGMNSRFLSQVLDEYEQDDRLFDSGFRRVSQ
STLQRWRREMEELIRQVRRSAYQDERLLPTDQLVPVKWTLCLSPFDWFAQ
LEVNPEDALNALSKQDA
>HCH_06944 Transcriptional regulator
MRNIDLNLLVIFDAIMTESSISGAAERLSMTQPAVSNAVARMRQVWNDPL
FVKNGRGIQPTTHALSLWHQVSGPLIQLKDAVNPQDFDPSTTRRRFRVGM
SDITTDLIWLPMRRMVETEAPNIDLHAVPANGNNSESILTNGEVDLIVGV
MQEFRTSFRNDFLFESDYVCAMRKDHPLAAEPLTLEKYLKADHLLVSLTG
EATGFVDITLSQQGLSRRVAMTVNHFASVPALLEGSDLISIVPNMVIAKG
AKCGSLHVTKPPLEIRPTPVSMIWHARHDRDPGVLWLREKIKFFTIAEWL
KYLPSCCPQVCHLHQWDDVAAEGEEVIMD
>HCH_00532 AraC-type DNA-binding domain-containing protein
MDQPTVAGSTVKALCFWLAERGMDINALAHEAELDLSMLEDQDYRVPLPA
YNLLWSRAEETLKDPAVGLHVGEWVDSRRMGVIGHIIFNNRTLEQGLKQY
VRLSALVNEGVRTEFHLQGDDAVIEYHCERPEYYHRAGMDRMLALSVTRA
RRFVSEKIYLTKVGFSHPEPEYVAEYERIFQCPVSFNQPCCSLAFNKDFL
TFELPQRNPYLHQALTRQVEALLQKLSLRRTVSHKVKAIVAKRLSRGDIE
AEKVAEKMNMSRHTLYRKLKQEGVSFQELVEQVRKDKALDYLQKGKYSLS
EIAFLLGFSELSAFSRAFKRWTGESPASYRSQQ
>HCH_06509 Histone acetyltransferase HPA2/related acetyltransferase
MKIRRAFSEECVVLSEIAMESKAVWGYSQEFMDACQAELTYSEDYMSRHT
VYTAVARSGEIAGFYSLRALSPVCTEMDALFVRPDYMRQGVGRALIEHAV
LWAYQCGYHLMMIQGDPNAAGFYQTFGATLIGYADSTRFPGRKLPLFQIA
LIDQVSAISASL
>HCH_00318 Transcriptional regulator
MTFKPKETLTEQVAQHLEDLIVLGQLQSGQRIFENAMSKELEVSHGSIRE
ALLLLEKRYLVTNVPRKGAFVTELNEHFVDSLYETLLLILSHTGVKLVCS
WRPHDMERLESLYTQMKTCFEKGDLLNFHKIGVEYTQASLVYADNYFIIN
MVNDLWPSAKRCSFMALRQGPKIIEDNLSYMRSSLDAIHQRDERSLQSIL
TSYAESQRQQVIECLRAQTRR
>HCH_05756 Superfamily II DNA and RNA helicase
MSSTDSATALSKDFASLGLSDSLLSALKDVGYEQPSPIQEQSIPLLLQGE
SILGVAQTGTGKTAAFALPLLERLDPKIQSPQIIVLAPTRELAIQVAEAF
KSYSRYLPDFTVLPIYGGQDMRGQLRSLKRGVQVIVGTPGRVLDHLQRKS
LDLSQIRAVVLDEADEMLRMGFIDDVEEILSNAPGECQYALFSATMPPAI
KRVAEKYLKGAKEVRIAAKTSTVERISQHVLMVDNSHKLDALTRVLEVEN
FEGMIIFVRTKSATTELAEKLQARGYAAEALNGDQTQKIREQTIDRLKKG
RLDIVVATDVAARGLDVERIGLVLNYDIPYDTEAYVHRIGRTGRAGREGK
AILFAAPKERRLLRAIESATKQPLTPYEAPSAEKISEQRIQQFQENLHRT
LDGQDLDSMKKVVLDFCKENELALEDVAAALAFRLQVEQPLFPILKDLPK
LDKDFRGRDRDRDGRGRNPRDRDRRGREGREGRDSRRDDGIPRERYRIEV
GRSHDVSPGDIVGAIANEANIESKYIGHIAIYDNFSTVELPEGMPKEVLQ
HLQKVRIRQQLINMKPDAGKPERKPRSGSGRGGPRPSSKRPRS
>HCH_06622 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein
MQVSNNVIVLPINRKMDPNQQDPDAGEDSASSRDVLAPLIEAVAAQRDRD
AFRQLFQAFAPKVKAYAIKQGMLEHAEELVQEVMVNVWRRAAQFDRDKAA
ASTWLFAIARNARIDLLRKLGRSSQETQVETDYLWSLPGSDEPTGAFQQA
VIVRNIRQSLGELPQEQRDVIAKVYLEDKSHQRVAEELSLPLGTVKSRVR
LALQKLKVILQEREKAV
>HCH_00228 Histone acetyltransferase HPA2/related acetyltransferase
MQTVSTYYLEMTSPSDLRAKSPVAELQIMECEIRQFEYSRFLYTLVGGAW
GWTDKLSWSDEQWRDYAENENLRTWVAYFKGSPAGYFELQKQPGRQVEIS
YFGLAPKFIGQGLGGYLLTQCIREAWNWDAERVWVHTCTLDHPGALANYQ
ARGMRLYLTETD
>HCH_03043 uncharacterized protein conserved in bacteria
MLTIGQMARLFDVTTKTLRYYESAGVFCPAIYGRENGYRYYAPSQIDELQ
RILWLRDMGVPLESIRGLKEQGALSDEHVLRNKLCGHATALEREIEDKRK
LLNELLIYLKQPIMENINMNSTQGAAVEPQVKELPAFTLIGMEYRSSDVR
DSIPMLWGRYLPREDEIRGRVNHEVSYGLCLPLEDGEFRYIAGVEVEKGT
PVPEGMVSVTVAAARYAVLTHTGPVAGLNATFRKACSRDLPESGLERVDG
PDFELYDRRFMGPDSAESQVDIYLSIAE
>HCH_01386 Histone acetyltransferase HPA2/related acetyltransferase
MNFVLTDSPTQEDIDVIHNGLIAYNLNYMDIREMKDLAVFYSDDQGVRLA
GVVGETLGNWLKVKYLWVSEALRGKGIGGELLARAEAEAIKRGCRYAVLD
TFSFQALPFYEKKGYMLQFTLESYPKHNQAKHFLTKELIQPDNENA
>HCH_04898 hypothetical protein
MKYLRTFYQRLRDFRHKKKLTLEDIATFCQVDVTVVAGWENPIESQRCYP
SIDNLFDLCVKTGVSLDALLDFDQNEKTNPQLDLPGFEMGEDGDLDTVIE
RLTKVMEEALPDSTERLLLKRFRASDEDKKRFILQLMNNGD
>HCH_02572 Guanosine polyphosphate pyrophosphohydrolase/synthetases
MLVERAKLFASAAHAAIGQRRRYTDEPYIVHPTEVAAMVASVTDDEEMIA
AAYLHDVVEDTQVTHAMILEFFGPSVAQLVEEVTDISRPQDGNRRTRKEI
DRQHLAKASPRAKTIKLADLISNSTNIIQHDRWFAKDYMREKKLLLEVLS
EGDCSLYQRAQNITNEYYAEREVYRLLRNGEQGIS
>HCH_00707 Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
MPALYQTLAESLMQDILSGRLQPGERLPSVRHFSRQHEVSLTTALQCYRQ
LEADGFVQARPQSGFYVRHKEKPPAGPELPVFTGRAARVANIGAIEEVQA
VSSRRNFAPFGVSLLAPSLVPSDMLQRSLVRASRRLGERLFHYGPAQGDA
GLREALARHFKEDGMAFSPDDLMICNGGMDAVSLGLQLCTQPGETVAVLT
PCFSGLLQVIESLGRKVLEIPLHYRGIYPDRLREAMAEPDVKACLLSANN
HNPLGFTLSAQEKKDIAAWAAAYQCPVIEDDIFGECGYGRQRPLPIKAWD
EEGWVFWCGSVSKTLTPAYRLGWCAPGKWRQAALQHRRALTISINLPLQA
ALADFIHCGEYRSHLRKLRLSLAQQVDAMSRAVLQFFPDGSTVTEPEGGY
VLWVTLPPQCDGWRVFQRAAQEGLSISPGTVFSITERYRHCIRLNAGWPF
DDSALAAVSRLGEICREETL
>HCH_00582 Transcriptional regulator
MRPVRPPEEVEQLKRNILDVALRLIVQEGFAALTMRRLGKALGMTAPNLY
NYYQSKDEIYVTLMIQGFSKLRAYLMKRAEAEQDAISRGRAIMRGYIEFG
LSQPEHYELMFSSHAPKFREYKGTDIEPLSNQEYALSMEVANFAETCLQS
VLDRVGLNASSDQRRTMLIELWSLLHGMVSLHLTGNTAYLTDTPLETYEH
ILDLLLQRFVDRHRAQQS
>HCH_02007 Transcriptional regulator
MIEKLEIHHLRTLDALYRFGNITAAAESLDLSQQAISQQLKKLRGILSDQ
LFVRTGHGVAPTPYAKQIEPHIQRVLAHLHAIPLPEAFSLAKMERTLVIS
ATDYTQKVIVTGLVAELRKAAPRVKVVVANIESASLTRKMRQGEIDLAFT
SHGYVPEGLLSEPLFTERYLCVSADAGLAGQGEISLDQLVARDFIVTSPG
VGGFAGSADAWFEQQGLRRNVTISAPSFHIAQEYLKATDMVAFVPSRLLP
CEGLFEIPLKKYPPGYEVVAAYHPSAKDDPLIMWALKAVQQCASLA
>HCH_06627 Transcriptional regulator
MTREQLRIFAAVVSEGGFRAAAKKFYRSQSAISKTIRALEEEIGFQLFQR
DRYRPKLTEKGEAFSGKVNELLLKFSDLDSYTRELAMGYEPVIRVAVNHI
CPLEKVLPSLRECAARYANTQVDFYIETLEGAMQRLQENQADIAITYQER
VHASLEASPFSQIVLKVVATPDYLANLLRCDNGEPDLCRSTQIVVEDSAI
KRLDERYLLVDNGGKWAVNDHNLKKRMILAGLGWGRLPLHEIREELAQGE
LLPMPHIPCDATEKVDLYVLRKLEKPHGPAVRFLWESLTRTTQRVGVAEP
VAAI
>HCH_02482 Transcriptional regulator
MDLNSMCIFTKVAETKSITSASQMLGISKQTISRKIIQLEESLGVCLIRR
TTRNFELTTAGQAYFQYCTCIVQQAEEANAMVKSLQSTPVGEIKVSMPLA
FNNNNAMSKLFTNFLKKTPQVKIDIHLSNRRTCLISEGIDMAFRLGPLVD
STMIARGLGVLTFTYVASPEYVEMNGLPDTPNDVINHTIIAMHDCKLLDD
FRINEKIGDRVQINDFSLAKQMAMDGFGIAVLPVFMCVDEIREGILTPIQ
KECFQPTRHLNLVYTQSRHQPAHVRKFINHVVEETRPIPPWEIYVDDVFP
SHTMISPHKSVDREPLLMQK
>HCH_05619 predicted transcriptional regulator
MPSTLGRKLRKLREQQKLSLEQLAVLSDSSKSYLWNLENFESSNPSVDKI
GKIATALKVTSEFLLNDSAATPDQGVIDEAFFRKYKSLPEADKKRLRQIV
EAWAGE
>HCH_04651 predicted transcriptional regulator
MSPVSFFKCLADETRLRLMLLIQSEGELCVCELTHALQEIQPKISRHLAQ
LRKSGLLLDSKRGQWVYYRLNPTLPYWIKATLEHSASGNEGFMQEVKSRL
ADMCARPGAGSTCCE
>HCH_00207 AraC-type DNA-binding domain-containing protein
MKTANVAAVAAPRGGSPHHYFGALADSPSLADAAHFEVAICCAGGAVLWD
ERRRLVLEPFSLVCFSSLHGVKQLHSNAEAWGLRLWLPLSFLAELCIPHR
MKQKLLHGEICVADAAKALESETVARWAEELACQDDYLKDLVWDEIALLL
RRLFKDAPGPDACVAKPAGEPKGSCRHVHKMVEYMNERYCDSISVADVAA
HVRLHKNFAMGLFKQVLDMTILEYLTQLRVNHAARLLTTTSLRASQIAFE
SGFSSITRFYEVFSRSFSQSPCDYRKSRRV
>HCH_01013 Transcriptional regulator
MNTREKIILASLDLFNERGERNVTTNHIASHLGISPGNLYYHFRNKTDII
YEIFLQYQLLVNHYLQAPEGRPLTVEDQFDYLESVFDGLWSYRFFHRDLE
HYLESDERLKTDYRKFTQRCIGSVVNIIQGMELSGILRPVSDHLRRSLAL
NVWLVVTNWMSFLKTAADEESALIRKDTLKHGIYQVICLETPYLQPAFYD
QVTGLQQNYSPSVLNDLGL
>HCH_04353 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MTRRIALVEDEPLIRANYSEALKKHGYQVETYDSRPSAMERFRVQLPDLV
IIDVGLGSDVEGGFELCREVRGLSSQVPIIFLTARDSEFDQISGLRLGAD
DYLTKDISIPYLLTRIVALFRRLDALQAANQKQDELITRGQLKLNIDRMQ
AFWNDEPIMLTVTEFWIVHALARHPGHVKNRTQLMDAANAVLDDSTITSH
IKRIRKKFQAVDPDFRAINTAYGMGYRWDSTQP
>HCH_05586 Transcriptional regulator
MGRKSNTEERRMQIVNALLRVMTKKGYEGATIQAIAAEAGLTPGLIHYHF
KAKREILLALVEYVVSIGETRYRMLSVDAQTPQQQLRAFVDARLALGKGA
DPEAVKAWVLIGAEAVRVDDVRELYCEAIAMQMKELAQLLWNIAGDRLAA
EDIRKLAAMVLATMEGAYQLAVTNPDSMPKNFAAEMVMETIVKACGGEFS
TAKPAPPGRRRKGDAR
>HCH_06917 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MTERLLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLI
ILDVMLPGMDGLSVCREVRKHYKGPIIMLTSLDDDIDEVAGLEVGADDYL
AKPVKSRVLLAHIRAQLRRVETYSANDSDAPATQENGVIRIGELVINSNA
RTVVKAGVAIDFTTAEFNLLYYLARQAGSVISRDLVYREIFNLEYDGLDR
SIDLRVSRIRKRLGDDPKQPRLIKTIRGEGYLFVDNADNGET
>HCH_05438 Histone acetyltransferase HPA2/related acetyltransferase
MTDISIRQATADDAALILRFITELAIYEKAEHEVKTNAEEIQQSLFGPDS
STHALICSVNGEPVGYAVYFFNYSTWLGKHGIYLEDLYISPECRGAGAGK
ALLRHIAKIAVAKGCGRFEWSVLDWNEPAINFYKSIGAKPMDEWVIYRLT
GDALTTFANG
>HCH_04936 Transcriptional regulator
MTTRAQQKERTRQALMNAALQQLGPDRNFASLSLREVAREAGIAPTSFYR
HFNDLEELGLALVDEAGITLRRLMRQARKRVAKKGGLVETSIDTFFEYLN
SNANLFRLLLREKSGVSLRFRTAIKAETDHFITELAADLSRFGENGGAPL
RDPKAVADALVVLVFNCGSEGLDADAAERKQLKLKLSSQLRMVLRGDLDR
KRSPEPL
>HCH_00550 putative transcriptional regulator
MSSSMSTLRNQFLIAMPHLKDPNFEGTISYICDHNDEGAMGIVINRPLDI
RLSDMLAQLELGGEGIAMPVYSGGPVQIERGFVLHSPLGDWQSSIEIAPD
ICITTSKDILEAMARGVGPDRTLVALGYAGWGAGQLEKEISNNFWITCPA
DSAIIFRTPDSEKVVSALGRVGIDYHRLSSISGHA
>HCH_03912 Transcriptional regulator
MIDELRALAVFAKTVEAGSFRAAASALSLSPSVVSHHISGLETRLGVALL
YRSTRRLSLTSEGERLFDHAKTMLAAAEAGLNAIIEQAAEPTGKLTITAP
AVLARGPFTADVAAFALAFPKISLFINYSDIRQDLIRDGIDLAIRIGEMA
DSSLKSKKLFDLTRRLVAAPGYLKNRPTPNHPADLLQWEWIGLKMRPNYK
LLHSASGERQRIDFTPRITVDSIDAVCQLAAAGLGLATPPAFLVEDDLRN
GRLCEPLPAWRVDTLGVYAVWPPNAARESLTYRFIQFLQSRRERGSHDL
>HCH_00501 Transcriptional regulator
MTTMTTTPGKALKLGEQLCFALYSTSLAMSKLYKPLLSELGLTYPQYLIM
LVLWEQEGLTSSELAKQLTQDLGALSPVVKRLEKEGLLQRKRSREDERVV
RLFLTEAGKKLRDSAESIPEQVLCISGLGMEEAKALRKQLEELRQALSTR
EKSE
>HCH_01192 Transcriptional regulator
MRQYTKGKRYLCNGLGAGPGNNKEAYMDKLAGLTAFVNVAEAESFAKAAR
EMGLSRSQVNRRVIALEDELGVTLLARTTRHVSLTPTGQAFYLRAKSILN
DLREAETAIQSDHAEPQGDLKINAPMSFGTMHLSSALADFMTRYPNIRVH
LVLDDRFVDPVSEGFDITVRVAETREAPSLIEHTIVEAKRLLCASPGYLQ
QHGRPRTIKELASRPCLHYGNLASGYTWRLRRGDAPETSVRVNGVLCCNN
AEALRDAAVAGLGVALLPTFIAGPELQTGRLVSVLPEYQAPPVYLSLLYP
PNRHLAARVRVFVKFMQARFGDQPYWDLFS
>HCH_00712 predicted transcriptional regulator
MSEDTVPLKTPPLQSARMVETIYGCKWSLTVFSLLANGVNRPGEMVRRVD
GLTTKVLNDCLRKNQSFGIIKRIAYPEIPPRVEYEITPFGRKFIRILDDL
EKLQEEIVAATKDSPQ
>HCH_01543 hypothetical protein
MNAEFFHQPRQFRKSDFAQRLKELRSHFGYTQQKVVDGVNELLPLIQHRP
HPLCRSRYAKWELNNRTEMPDYPELLALCHYFEQEPYYLLTGVNGPRKSR
NSQHALDTLYSRWEEDIHFKYVVKMLLERTPEATRKLAELIDVLTLGDRC
LLNNHKNRAN
>HCH_02995 probable transcriptional regulator, AraC family
MITWKHQPEDAFVSRYIECYWFLRKDQDDIAHDSPKLNPCPEAHLIIAPP
EQPYTYGLCERELSGKGTHLKLPNTSSMTLHQAEPFAILGVKFKPGALYS
IANGLAAIDDVISPPGFLAEMPDLLREDVLKNAADNAVTVGRNLDAWFKA
HSDCIREDRHSRLARDALALLATTKASELETGLYRSLRAVQRAFVRVTGL
TPKQYQIMVRLDELLLYLYQQNTESMSWADVAAIFGFTDQPHLIRYFKKL
IGDTPHAYRQAKNLTIDAYGDFD
>HCH_03338 AraC-type DNA-binding domain-containing protein
MDSVGFMSKARAFPQEPLLRQVLFNLRISGSLYFDSQLHGDWGMAVSASE
YIQFHCVAAGVCWLTTATEQVRLSPGDIALCMRGQVHTLSYAPDVALATD
QAYLESLRQGAPLFREGPFNNRLLCGHFAIMDRDTVPFLAALPDLLVVRH
QSKSVEWANALRGLLESKKELESNDNPVSNRLAEALMIRFLEGYFQQQSQ
QGEPVGVIQDRRIARALNIFHRRYHEPLTVEQVAGAVGMSRSAFSVLFKR
NLKQGPMEYLNSWRFYQARKILQQSHRPLSQVSLDVGYASEAAFSRAFKR
RYDITPGEYRLSAINSKSVAVIRNGRLAATR
>HCH_03982 AraC-type DNA-binding domain-containing protein
MGEMAMSDKIIYNRESKPSIEACLDAHNKGLFVDLLNQHAKQVGVNHTPL
PEVTTFRVVKPSPRQPVVYEPAIVIVGQGGKRGYVGEQTYTYDAYNYLVL
SVPLPFECEIYEASPESPLLGLRILVDTLALNDLLIDMGDPPSRTSGDIP
KSIYSTPLNDTLIEACIRLVKVLSDPAEAKILGPQILREIYYRVLCGDRG
ETLRAAANHNSRVAQIAKVLKMIHQQYDQPLDIDTMARAANMSHSTLHHN
FKAVTDCSPLQYLKSIRLHQARNLLARGGINASTAAMKVGYVSPSQFSRE
FKRLFGAPPRDRSLGAALEV
>HCH_04421 Transcriptional regulator
MSPRSITPRNAQYAERDASDYQLDAVDRRLINRLQSGFPICDEPYAAVAS
ELDMGETELLERLQRLLQTGYLTRFGPFYHAERLGGGLTLAAMQVAPEDV
ERVTMAINRHPEVAHNYERDHALNLWFVVATEKPEDVYAVLAAIASESGY
PVYNLPKQREFYVGLHFQA
>HCH_01417 predicted transcriptional regulator
MLRLARLADYGLLIASSLEEPGKALVKLDQVADQTKLPIPTVRKIMKLLV
DGGVVHSERGVKGGYCLSDAAYNISIARILRAVEGGVALTDCCAEERVCD
VMHACTVHSNWSVINQTVSEIFERLTLRDMSRRLSKADVISKVRTDDDVD
LVMLSELAS
>HCH_06098 Transcriptional regulator
MSKDRNNRKEQILQCLAQMLQDEPGERITTAKLAKTVGVSEAALYRHFPS
KGRMFEGLFEFIEESIFSRIKLIRSEEISTAQKINKSVLLCLTFAQRNPG
MCRLLLGDALQGEKDKLRARAASFFERLETEFRSMLRDGDVLHGQRTQLT
QLDSAQLFLSLIEGNMHRFIRSGFRIDPLQGWDEHWGFISQHLFV
>HCH_03697 Transcriptional regulator
MRSNSRPSLKALEVFEAVARHQSFCKASEELCINHSGVSKHIKSLELHFE
KRLLVRNNKQVQLTDSGQRLWEQLTQAFEIIRGACGIPHEKNFIEIKVPV
TFAIRWMLPRLSRIREETELNLKVTTAWRHSVDFLKEHYDMGIIFCDDPS
EEFFYEENLVAVCSKDYYEQLQGLSDQEIMNQANFISPNPSMSDWELFFS
HTGLSSAQISADRMLIMDSMESAITAAVKFSGVAITDVLYVQNELAGGQL
INVFSRTVKTGLGYKLTCVPSLRDSREYETLQEWITREANSQPARILSTE
AVAAE
>HCH_03585 Transcriptional regulator
MTEKRPPDAVDKILQQWNVERPDLDVTPMGSIGRLKRCAALMQRRLDATF
SQFDMTGWEFDVLATLRRSGKPYCLAPTALFSTLMITSGAMTHRLQRLEA
SGLIERTANKEDARSKLVQLTPKGLELIDRAVDAHVQNEHNILQPLNPEE
RQQLDECMRRLLRLLEGEG
>HCH_03049 conserved hypothetical protein
MPGGCPERFYPQLQHIHKPACPVMRELWLVIHPDLRRSPRVRKVADALIA
FFETGVI
>HCH_02203 Histone acetyltransferase HPA2/related acetyltransferase
MEIREALEADFEQIWRIFHSVVVAGETYAYAPDTSKEEAYELWLRQPQKT
YVAVEGDTVLGTYYLKQNQLGLGSHVSNCGYMVAESARGKGVAAALCEHS
QAMAKRYGYKAMQYNFVVSTNEVAVNLWKKLGYEIAGRLPKAFRHSKLGL
VDALVMYKWLGD
>HCH_05958 predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains
MHCPFCSAADTKVIDSRLVADGSQVRRRRECVSCSERFTTYEAAELVMPR
VVKQDGTREPFDEDKLRAGFLKALEKRPVSMEEIEAAVDRIKFRLRATGE
RELNSRVIGEEVMSELRELDQVAFVRFASVYRRFQDLDEFRAEIDKLSRD
AAASPMMSEKASNKDDVPTK
>HCH_03743 hypothetical protein
MQWITGFKVSLYKKLLLNADDGVTSIRWSSVFSNQSDCTKCLEKYQGATP
HCRNRELLIKDSFGNMGQLLSQPN
>HCH_00217 Transcriptional regulator
MPKSTLEQWRMLHAVVAHGGFAQAAEVVHKSQSTVHHAVHKLEEMLGVQI
LQVQGRKATLTEAGKLLLRRSENLLQQAEQLESVASGLAQGIEAHIQIAV
EIIYPQEALYCALAEFSEQYPNTRIEIIETVLSGAEDLLKQGVCDLVITP
FVPQGFIGDLITNIPFTPVANPEHPLHQLNRTLNKEDLARHRQIVIRDSG
AVRRNSGWLGAEQRWTVTHMSTSVNMVKRGLGFTWLPVSWVDADIQSGAL
KALPLQEGGDREVPLYLVYGDMDRQGPATLYLGNQLLRRGREWTRFPE
>HCH_01676 Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
MSVTPSQDRHEEPPLHASLADPCLNSMTFLNDIAGQYPKAISFAPGRPIE
KDFRIEDIDRYLQRYVEHLTQHEHRSEGAVITQLFQYGPSEGHIRALIAD
MLEKTDGVACRPEDIVVTSGAQEGMILTLRALFADPRDVLLVPQPVYVGI
IGAARLLDIRVETFDIHDQGVDISEVESKIQALEAEGNKVKALYINADFC
NPTGVSLPLSQRMDLVWLSHTYHFTVLEDNPYGIFGAASAIKPTLASLDR
HGRSVAYLGSFSKTLFPGVRMGFVVSRRLAQALTKIKSMLTLNTSPICQA
VVGGVLLECKGDLRLHCENRIHFYQNNLKHLLHQLEIAFPKGSTMRSQIT
WNRPDGGFFLVLKLPFTVTLTQLKASAEQYGVLWTPMEMFYSPPRESNEI
RLSFSYLTPEQISEGVSRLRDFIKERLALRTPETAAAS
>HCH_03105 Histone acetyltransferase HPA2/related acetyltransferase
MGDEPLKIRYVMEADKANWLALRQELWPETPPQEHEAEIHAYFSMPDLAT
FVAIADNGDMLGFLEAGLRSYGEGCASHPVAYVEGWYVLPSHRRQGVGRR
LMDAAEEWALDRGLREIGSDMLVNNEISLKAHAALGYTEVERLIHVVKKI
DSA
>HCH_02305 Transcriptional regulator
MTLPACQEGREDQLLALDNQICFLLYSCSRSMTSLYRPLLNELGLTYPQY
LAMLVLWEGGKSGEALTIKHICERLLLDTGTVTPLLKRLQQQGLITRQRS
AEDERSVLLGLTEAGRELKAQAAKVPMQLLCKADVAIEELERLKGDLRGF
LDRIQQLS
>HCH_02872 hypothetical protein
MIPELFHDDVQFDREGFKLRLRQAQDYYGYTQQQVADAIGVQRSKYAKWV
LTERSELPDLGELTRLCVFYQQWPIWFLAGVQGPSRHKGQQLLQDDLFAR
WNSDGDFQYLVRMLMMMDAGFVKRLAGLVDDFRLGTAGGE
>HCH_02709 Transcriptional regulator
MAAPDSRTLADQAFERLQTAIVKGDIRAGEKISEAELSSKFGFGRGPLRE
ALHRLEGRGLIVRKAHSGARVVALTFEELIELYEVRESLEGMAIRLASER
MSQEEIDDLKRLMDIHAEQIKEEKGLAYYQKEGDFDFHFRIISGSKNRKL
SNMLTGELYHLLRLYRYRLSTFSGRPEKAFHEHWRIIEALEERDGDLAEL
LMRRHISAARNNLIKKYRDGELQL
>HCH_00516 Transcriptional regulator
MKQAIVLDALAYFDLVARHGGFSRAEQASGKPKATLSRQVRRLEDQLGIR
LINRDSRAFALSEEGRWLHERTRDLLGDLNETVTALTHDRAPARGRLRVS
CPMMFGHMVMGRRAAEFAQAYPEIQLEVTVEDREVDLIEEGYDVVIRVNP
RPDSQLVGRCILRNVQHLIAPAGLPQPTDETAPVPAVARSNTPDERILRV
LDGQNERAYLLRSALRLPSPLMQRDAVLTGGVVAVLPYALVAQDLAQGTL
VDWGRLPTPPVEVWALHASRRLTSARIKAFIEFLSDRSESPLAL
>HCH_00346 Transcriptional regulator
MCSNFTTTINKSLPESIQIMNETITHQNLLEVIRQRLNDLNKSERKVAEV
ILRDPKAATRYSIAALARASDVSEPTVNRFCRNFAASGFPDFKIQLAQSL
ASGTPYVSQSVESSDTVEEYSDKIILSTIADLDKARQSLNTTAISKAVDY
LIQAKQISFFGMGASAAVAIDAQHKFFRFNIPVTAYDDFLMQRMVAAAAH
TGDAIVAISYTGRTREMVEVAKIAREQGAVVIGITAPDSPLARECTVALD
VIAPEDTDVYMPMTSRIVHLAVIDILATGVTLKRGADFHSHLKRIKDSLR
DTRYPHDDGV
>HCH_02930 Transcriptional regulator
MVNKKVRAPLPAKSKQLSKTDWLEFALKQLVNKGPDSLKIMPLCEALKVT
KGSFYHHFQSRQDFNDALMSHWYERMTMEFIKQADAAGAPLERLKKLDQV
IAAHNIEAEMHIRAWALKDVQIAEHLEKIDNQRQQYLKQCYLDLGAEDSL
AGELAQIAYGLFLGLQQIHPKPDIETALRLAAMVSGKFVSY
>HCH_02929 AraC-type DNA-binding domain-containing protein
MALIDGEARFDADQLYNAVIGVAAEVGRHDSGMHRHKKAQLLYAPKGCMN
ITLDNMHCVLPPTRAAWIPANTAHCVRMTNVVAYRSLYFDLSLNGPLPGR
ISIFCVSGLMRELIERMAFWPWDIAEEKQRNTRALLCEELAQAKTEALQL
PLPRDKRLSGWLATLNEPDVLPEPLNQLAHRVGASSKTITRLFNKETGMS
YQSWRQQWRLLKAIEKLSEGLSVNDVAYALEFSSDSAFISFFRQHTGQTP
YQYVRRG
>HCH_01829 Transcriptional regulator
MEIRWLEDFIALAKTRHFSRAADEQNVTQPTFSRRIKLLEEEMGVQLVDR
NTLPLSLTPAGELFLDAADKITRILRDTREECHAIHEEQSSRLVFATTQT
LYLSFYKTWLEPFSRALDIALDLNLHSTAWTVRDFSHALLEQQCDIMLCY
WHPSIELLADATPNEFEYVKIAGERLLPCSSVDETGAPKFVLPGHKRRPI
PFIDYHDNAFLKPVVHHTITHSQNDLHLVTVNKNFHSVSVKAMIREGFGV
GWIPFRLAQESIRYGRMKAAGDERYYTDLEVRFYRKKDNKHPSLEKLWNK
LKEHTEANVSVV
>HCH_05053 Superfamily II DNA/RNA helicase, SNF2 family
MSKLSTPNFVIGQRWISNTEPELGLGIITENDNRRITISFPAATEQRTYS
AANAPLSRVQYQVGDNVSDNDEKKYTVAGVIEQQGYLIYEALDEKGRKVD
LPELELSSFVHFVSPKDRLFSGQVDKLSSYLLRQETLGYQTRQQATQGYG
LMGARVQLLPHQMYIANEVAHRHAPRVLLADEVGLGKTIEAGLILHHQLL
SGRAQRVLIVVPESLLHQWLVEMLRRFNLQFSILDNERCEALTESGEENP
FECSQLVLCSLNFITDNDQWREHALNAQWDMLVVDEAHHLEWSPEQQSPA
YSHIEALAQKAPGLLLLTATPEQLGLESHFARLRLLDPARYHDLERFREE
ESQYQPVNDLVKELLGESGPTRLLDSQDLQAKLADYLGQDAVDKLLAELN
QFAVDADEDSREEALHRVERAVRKLLDQHGVGRVLFRNTRSAIKGFPQRI
LHLHPLPQPEELATLSASASLEQRLHPERLLGAEWVKTDSRVEWLAQWLK
QNRQEKVLVICAHAETALDLEDFLRLRGGYRTAVFHEGLSLLERDRAGAY
FADDEYGAQALICSEIGSEGRNFQFARHLVLFDLPQNPDLLEQRIGRLDR
IGQRHDVNIHVPFFENSAQERLLRWHNEGINAFSRPCPAGAAIYQRFAVR
LESELEQTDDRDEFNQLIADTHQFTEETLQALQQGRDPLLELNSCDPLKA
NDLVEQIVEDERRKELEDYIERVFSQYGVDQEQHSERAYIFRPGDHMQCS
HFPGLPEDGVTATFHRDLALSRDDMQFLTWEHPIVTGALDMILCGEFGNT
GLCTIKLPPLQPGALMVETIFRLNCPAPKALQLYRFLPKEPVRLLIDSSG
KELGQILTAAHLQQLGENVPKRTAQDLVRHARAQIEPLITKAEKTAAAQK
SELVERSIATMLESQQTEIERLKALAEVNPNIRQDEIDFLIQQTETLEKY
LKGAQLTLDAVRVVIAT
>HCH_03926 Histone acetyltransferase HPA2/related acetyltransferase
MTGDLVADTALVRLDRSALSEAKSILFHAYRHEPTFQYLFDSSRPGYDQR
VRATIREGLELHFAHDQDALGLVDEDTLVAVAFIGSPEARFSLADQLNWR
IRMMLTAGLSSTKRYIDYHEQVHACLPKDTHHHLPFIGVHPKYQSKGYGR
MLMQVIEGICRESPLSSGIGLDTGNARYLRFYLGLGYEKVGEVRLGNVTE
TVLFKPCH
>HCH_02462 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MTAAKPRILVIDDEPQILRFLRISLRSEGYEVLQAGSATEGLMLAATEAP
DAIVLDLGLPDMDGQEALRQLRRTCRTPVLVLSVRSSETEKVEALDNGAN
DYVTKPFGIREFVARIRVLLRDREPAALRPSADIYHSAGLHIDFVKRSVT
LDGEDIHLSKKEYALLARLAATPDHVVTQQQLLAEIWGPTHKEDTHYLRI
VVAKLRNKLGDAPSAPRFLVTEQGVGYRLITYEAE
>HCH_01175 Transcriptional regulator
MLERNHLAILREVDRLGSLTAAAESLCLTQSALSHAVKKLEQQIGAAVWT
KEGRNLRFTQAGEYLLALAKRLLPQFEHAELVMSQFSQGQRGALRIGMEC
HPCYQWLLKVVSPYLQRWPDVDVDVKQKFQFGGIGALMGYEIDVLVTPDP
VRKDGLSFQPVFDYEQVLVVGENHPLAQAPFVEPVHLLQETLISYPVDID
RLDIYNQFLLPANCNPRQHKTIETTDIMLQMVAAGRGVAALPKWLVAEYA
QKMPVRPVRLGPQGIAKQIFLGVREEDAGTDYLASFVAMARDAEWKG
>HCH_03990 predicted transcriptional regulator
MTEDFCSNLKLLCSHYKSTAEVCRRMEIHRAQFNKYLNGTSQPSRFVLRK
ICDFFGVEPHELDLPHDRFMQVAQSRANSDRDARAPDKPYAEKLERLQQQ
SEGRLDKYLGYYYEYHFSMTFPDQIIRSLLQIDMSGNDYYFRRLERMRPP
NKEEKYKSRYEGTAMFLSERIFLVGYETLTHNEIAQTILYPTYKSRVSYL
SGLKLGVSASDRREPVCVKVVLEYLGRSIRNREALQKCGLFNPATDAVAR
HIKEKISDATGYRGASLLATPL
>HCH_02005 AraC-type DNA-binding domain-containing protein
MSTPIALDLRRYSPETQCHSHDYHQLVLPLSGRLELDVAGQGAMVDRRTA
AVIEAGRDHAFAGGEDNRFVVADLPVAMEPALGRLPAFIELDPGLRSYVH
FIAMELRRGQVGDTSRERILHLLLQLFRERFGAALNLDKRLLAARHFLDA
HLGDPITLDQVATAANLSRRHLSDLFKSAFGMTPMDYLRDKRMRLALELL
ENSPLSIQQIALDAGFQNQAAFSDRFRRHFGKSPKHFRPREKN
>HCH_01651 Transcriptional regulator
MLDELKTFIKCCECGSFSAAGKTLLLSPSSVSRQIDSLETKLQTKLFQRT
TRQLILSDEGRFLLERAEDILARLDDTVASLRQLHGEPEGRLRISVLETY
GRLHISPLLPKFLALYPKVSVDIELENQMVDLYRDAVDIAIRIGPPEDSR
LKAKKLTDGRMLLCASPDYVASFGPPQAPEDLARHNCLLISRGRRQVWWR
FHKGQEHRRVQVQGSLRSAGGTPLLESALQGVGITLLTQWSLQPYIDEGR
LLPLLPQWRASLYPENGGEIYAAYIDNHYMRPAIRAFLDFLGAHFVQ
>HCH_06834 Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
MKNCACLRMNEAATGMSKKRYEEVAEAVAGRIRQGMYAVGDRIPGTRDLV
EHFSVSVSTIMAAQRLLERQGWVEARPRSGYYVRRRNQEGAAEGGAALPK
VTGFESAPTLVDTQQTIMSLVQATQSPRGMNFAMAAPATQFLPAAAMEKA
FRAALRESGEEIEAYSFPPGALRLREAIVQRMKDAWCDLEPDDILITNGC
HEALTLALRAVTQPGDVVAVESPTYFGLLQVIDALGLKALEIPADPKSGL
SLEALQLALEQWPVKACVAMPNFSNPLGCLMPDERKEQLVRLLEVRGVPL
IENDIYGELGFSGLRPRAAKSYDRAGGVLYCSSFSKSIAPGLRVGWMAPG
RWLPQVGYLKFASTLACPSLPQMAVAHYLAQADFDRHLRRMRHEFAVHVE
RMTTAVLRHFPPGVRVSQPAGGFVLWVELAEGRDTVALYRKALAAGVSIA
PGTLFSGDGDKYRHCLRLNCAAPWTAEAEDAIRQLGGWLRAG
>HCH_00069 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
MTQPAPSAPDVRFLLLPLPEFTMLPFGGFLDKLRFSADDEDYSAQRYCAW
RVLGLEPGSIVSSSGVAIEVQEIAAQTRLTDFDYLVVFGGRTARRSMALA
SEYGPLLRKAAAQGLSLVSIDNACFLLAAAGLLQGAKVAMHWRHVQEFQV
AFPHIEVRTGQLYCFDGKRISCGGGVAAVDLAVELLARHCGRTRALKGLA
DMLVDEARSETHPLKSLAQESGLGRNVGRAASLMRHWLGDAFTVEDIAAA
IGVSRRQLDRLFITEFDCTARAYWREMRLQHVRWRLLNSHHSLAALADEI
GAQDVSHLCKLFRQRFGVSPDAFRKSGG
>HCH_00848 predicted transcriptional regulator
MRWNEIQDIPCSIARTLSVIGDRWTLLVIREAFLGVRRFEQFQKRLQITR
HRLSDRLNKLVESGVLRKALYQGSPARYEYRLTRKGMDLYPVILAMAGWG
DKYMAGDAGPPVEYVHLGCGKKMTATLTCSECGEPVDAKSVKPMLGSGLR
ALTKSADE
>HCH_03535 Transcriptional regulator
MEKKKSLSERKREAILNAAVSVFQESGFQGASMDRIAERAQVSKRTVYNH
FTSKEALFIEITEQVWRKAMDATEFPYQSDAPLAPQLTAIAEQELELLGS
EGYIAMARMVLAEYMLSPDLARQAMQKMQENEGGTKRWLKAAMADKRLIK
VDPEFAATQFMSQIKAFAFWPQIVGHAPNPTQAERREIVAAAVEMFLGRY
GKSE
>HCH_04706 Superfamily II DNA and RNA helicase
MPFFVALYTTSRGEESTPATHRSYTIQRNFTLSATAFSSLSLHPGLLQNL
STLGYHSMTPIQAQSLPSILAGKDVIAQGKTGSGKTAAFGLGLLNKLDIK
RFCVQALVLCPTRELADQVAKEIRRLARAIHNIKVLTLCGGMPFGPQIGS
LEHGAHIVVGTPGRVEEHLRKGTLVLDQLHTLVLDEADRMLEMGFQAALD
AIVEKMPAQRQTLLFSATYPNQIQSIAERVMLNPVMVKVESSHDNASIQQ
YYYKVEGDTHRLEVLRLLLLQYKPESTVVFCNTKRETQEVADMLVSHGFS
AVALHGDLEQRDRDQTLVCFANKSASILVATDVAARGLDIDALDAVINFH
IARDPEVHVHRIGRTGRAGASGVACTLFSESEMYKIGRLEEYQEIIVSAE
PAPATSLLKNLAYKPPMETLQIDGGKKQKVRPGDILGALTGDNGVDGKLV
GKIHIFDNCAYVAVARSAVKLAMDKLGKGKMKGRSFRVRKIRS
>HCH_05431 predicted transcriptional regulator
MLDNEFDPEGFEKALSLIKSMDNRNRLFILCLLCDGERTVTEMAEAAELS
LSAMSQHLSVLRQADLVETEKYQQSVTYRLKGNEVKQMIALLKKLYCDSA
AK
>HCH_04858 Transcriptional regulator
MELVALRTFLAVVEEGGILAAASRLNTVQSNVTTRIRRLEQELEVQLFFR
KGRGLELAPAGRVLQKHAQELLQMAQQTAAAVRSAGEATGELRIGTMETF
AAVRLPAALKKVRSRHPGLDLQVQTATSAELIERVLSHKLDCAFIGGPLD
HPMLIAEPVLMEELVLVTAKGEVDLQEPLILFREGCVYRARALAWQRECG
HQIASVMELGTLEGILGCVAVGLGCTLMPRRVVEQSPYARELAISELPEH
IAHTPTLMIRYRELPLHGGLLTLRDAVAGRALTK
>HCH_01572 predicted transcriptional regulator
MTTQEDSGERILYLIKSRGPASAPELGALLGMTTMGARQHIAKLEQEGLL
YSVEERKARGRPVAKWRLTEKAQSRFPDSHANLTVDLIASTREVFGEKGL
EKLIEARNAKQLQSYLTALSVYPDMAQRVAALAELRSAEGYMANAFFEQD
EGVWYLVENHCPVCVAAQHCQGLCRAELQNFQRCFEGLAMVERTEHLLKG
ARRCCYRFTGKSR
>HCH_05117 Histone acetyltransferase HPA2/related acetyltransferase
MEIRIDDLNGPEVAELLQEHLRGMAENSPPESIHALDLTGLKKPEITFWT
VWDGAELMGCGALKELGAGHGELKSMRTATTHLRKGVASHLLRHILEEAR
RRNYRRISLETGSMAAFQPAHQLYANYGFTLCGPFADYIEDPNSVFMTIE
L
>HCH_03054 AraC-type DNA-binding domain-containing protein
MVDRLAALLEHFSINARVFNTGPLCGVTDVYGKDQYGQLHLVRQGAVEVR
HGRKVVAEVAEPSLLFYPRPLPHRFVTDPVFGADFACANLSFEGGANNPV
VAALPEFICLPLSSLPGAAPVLDLLFQEAFAGYCGRQAVLDRLFEVVLIQ
VLRYLMEDGRTQVGMLAGMAHPRLRLALVAMHEQPGEDWSLEKLADHAGM
SRSVFANLFRDRVGCTPGVYLQRWRISLAQRALMQGEPLKLIAGEVGYGS
EAALSRAFKACVGCSPGEWRKHQGL
>HCH_06486 predicted transcriptional regulator
MYTIGQMSRKFGVSRSTLLYYDSIGLLSPSARSEANYRLYSEADLSRMEK
IVFYREAGLPLENIAGVLAQPHDGVQAILEQRLQSINREIQRLRAQQQVI
ATILKSERVRKKSRIIDKQGWVAMLAAVGLDEAAMRQWHVEFESMSPEAH
QDFLESLGIPAEEIKTIRHWSRNGG
>HCH_02020 predicted transcriptional regulator
MAVCASCFHIPRSRASKLSRAERLLELMQTLRRYRYPVSGKQLASELGVS
IRTLYRDIASLQAQGAHIEGEPGVGYLLRPGFMLPPLMFSDDEIEALVLG
SRWVSRRGDAKLGEAARNVIAKIAAVIPAELRQELETSTLLIGPAATQPE
DDKILERVRAAIRAERKLCIAYGDSEGNSSTRIIWPFAVGFFDTIRVVVA
WCELREGFRHFRTDRIGELHSLEARIPRRRHDLLKEWREFKGVEPQ
>HCH_06621 Transcriptional regulator
MDLRALRYYVAAVETGSITAAAEQCHVAQPSISLAVSKLESELDTLLLER
GKKGVRTTRAGRELHHMARRLLAQSDAMVKHFQQSAPLPPLRIGLDLVVS
LERVKALLARLAPLQLRMQLELLRGEENADIRIVSRDRCPENYHFSPLWR
DEYSLLLPADHPLSLRDQLEISDLNGISLVERSFCDLSGQWRAFAERHQL
DFTITARTDNEEWALALVAAGVGACLAPQGIDAAAPDGVIAIPLSQIEGF
PDIKRELGLAWSPLLRNEIKEALLPLFD
>HCH_03339 Transcriptional regulator
MKPKDEKKLEAVITATCRLAAERGLFGLTLAQIAKEAGIGTSTLYVYFPD
KEALFNEVYRQAKREALNFYFTGIDQTLPLKGKVRNVWNKMLDHRLQRFD
QVTFMEQFVGSSFMSDESRAFVERHGEGLIQMVVEGQREEILKPIPIPFI
SSLFFGSIRETARLIRAGSITDTEEAREIAFQLCWDGIRS
>HCH_00257 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
MAQTQSGIKRYEVGVLLYPTSMQSAVFGLKDLLSVAEEYRRQAASPHWPE
LRVSFWRTGEDAGQPGLSSRPLHEALQAAPDVLIVPPCFDALAVDWRQPA
LTTGLQALHEHGAIMASACAGSFALAGAGLLDGRKATTHWRLAKDFQAMF
PLVELVEDELLVDQGDVVTAGGVSAWMDLGLRMIQRVTSASLTMNLGKFF
LVDTGPRRQQYYQLFAPDFSHGDSAVRKLQLWLQERMAQDVSLEEMAAVA
RVGERTLQRRFRKALGMTPLQYVQQLRIQRARELLETSMATVERIIWDVG
YEDPSSFRKLFKLATGLTMTEYRARFQPTCMSW
>HCH_05743 Transcriptional regulator
MKQLAQLIEEGRITDPQSARGRLLAKAAHLFKEKGYERTTVRDLAASVGI
QSGSIFHHFRSKEDILFAVMEETILYITAKMREALEQAPTPRDRLLALLR
CELESVLGGTGEAMTVLVYEWRSLSEPRQDEILKLRDQYEGLWLDTLSEA
RDAGLVKGDVAVLRRFLTGALSWTITWYKPEGSMTVEELAQQALYLVVKE
>HCH_06494 Cold shock protein
MQSGERTTGMVKWFNNAKGYGFIESAEGDVFVHYSAIRKDGYKTLRAGSH
VEYQVQHSSKGLFAQEVSSSE
>HCH_02205 acetyltransferase (GNAT) family protein
MPSLGLQTDLMFSRYAGRVEDVGRYVVITTPHNPNYYFGNYLLLKKPPQA
GQWGDLELDFARYVGAPPRIKHFAFQWRVSGDEDGADMNGFMQRGYEYME
CAVLTAKRSMLSEPQNINADIDVRMLQSEQDWDAWYELELQERDVDQPGE
EYVAFLNGVRDMYRSMIAAGRGDWFGAFQQGELVGSVGLFFDERIGRFQN
VLTKSSHRSQGICHTLVHAVAKAGFDRADTLVMVADENYHAARIYESLGF
QPSERQASLCRRNDGESKSGEDSGVEASKPE
>HCH_01630 Serine/threonine protein kinase
MKVCPICSTDFPQGDYCPADGATLVDKQRRDPLIGKMLKDMYRIESRLAE
GGMSLVYVARQLSLDRLVVVKLLRAGMDDHDFIQLFFREARIASQLNHPN
VMHVIDFGNTDDGMMYLVVEYLRGENLSDLVEKRSGLPLENVVWLLEQIG
AGLQAAHQMNIVHRDLKPGNIIVARVSGDHSVAKLLDFGISKPLGEGDLK
YTRLGMVMGTPGYLAPEQIEGARNIDKRADIYALGAILYFCITGERPYTG
ESPQDIMNRQCAGPPPALRENRLTDARNKALEPVILKAMALRPDDRYPDV
QAMVRDIQNRAHAGIAEYSKAMEMAPPNPDVYQFIFYGEIRGDVELQDTQ
EKLKAALGLSDAACARLFSGKRVVVKKHLSLGKAKKYDEAFQAAGALGQI
EEMDTATRIDPAHSMDERSMSQPIVVAASTLAEPMHLGSQPPPFGVQGYT
HPVAPVLDDEGDTTIAPQGTPPPFPAAAIKPESAGGRSRLRLWSVLTVVL
LLIGVGYAVPVVRYSVFDWGAELAGWQAPRGVSEERVSLGMSAAFSGGAR
ELGRAMQLGVDLRIREINEQGGIHGRYIELRALDDGYEPVAARHNAERFI
QPDGVFAMLGNVGTPTAEAILPVALQDRTIVFGTFSGAALLRKSPPERYV
FNYRASYEDETSALIRYFVEEKEVDPRMIAVFYQDDGYGLDGLKGVEDAL
SDYGVRPHEIAKFSYQRNTAQIEGAAQGMLGRLSDIQAVVAISTYTASAR
MTKRLRQAGFTGPFANVSFVGARALAEQFKELGAEYGEGVIVSQVAPPYD
SYATGVLRYREALSRFYPNEQPDFISLEGYIVATLFFHALEKAGRHFDTE
SLVNTLESFDGVDLGIGETITFRASNHQGSHRVWGTQLNRDGAFEAIRLS
KKETL
>HCH_04765 uncharacterized protein conserved in bacteria
MSSSLELDFPAVDQSLCESIQYQGRKASRVKSEQRRREILQAALRIVAKE
GVQGVKHRAVAKEAGVPLASTTYYFKDINELITDAFMLFAEKSREKLEFF
YSELRRLADEYDAVSVMEDEGRRREFANALVEMGTNYVLGQVRHHKSELM
SEQAFLMESVRDESLSALARRYKDAWLSGLVDFMQSLGYETYVEDAAIIM
GMVGNLEQEGALQGGSIDEDKVRRVWRRLLYMMLDIR
>HCH_01271 Transcriptional regulator
MPVMKPLKQPKLSDVIVDSLEQMILEGSLKPGQRLPPERALAVQFEVSRP
SVREAIQKLEAKGLVVRRQGGGNFVSQELGASYTEPLFALIGQHPEAQYD
LLEFRHALEGVAAYYAAIRGTGADRKIIEKRYNDWLNYHEQRVSDLEAKA
DAEFHLSIAEAAHNVVLLHTMRALFTLLKQNIVSNLHYLYEEEAMRLKIK
EQHFRLKEAVLARDPNAARAAAHEHLAYVEEIVLEKGKADSRNMRSLRRL
QNLDE
>HCH_03170 AraC-type DNA-binding domain-containing protein
MQPKLYEWGDKSLLFYNGRRQPHHSMGITPTLLMGSQPFVIEIMGERYCS
NTFLLAPNKPFTISSEAPRMALLTLNPAAEDHVFLLRNYSWDFCAEGVIY
KLDNDSLQQTLFYLDESDIPHPIATWCLFNAIYGEDSLITLKKYDKRIAR
AVAHIIRNPTSDLSVDEIAAQVHLSPTRFMTLFSALNGLSYNKYKIVSRL
QYFFERYSIAHNLTHAAAEAGFYDLSHLNKSVKMYYGMSPREFLAVGQDL
ITINSPSHNRMWYADWVQYGYFELAQAYSEISVPELLAYLRDYVREE
>HCH_03311 Transcriptional regulator
MSENHIPETNVGESLHRLLHAYKRAMRQAYQEVNLTLAVSHIRSLKVINH
AREKNTVCTAQVIAERLQRDKAQITRVVKDLLEEGLIEKRDNPEDRRSQL
LQLTQKGVDAYKTIKEVEALAGSRMAQGLNADEIREFVKLANAMAENLKH
>HCH_04182 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
MTPLKIGFLLFPDTHLLDLSGPAQALRTLSDHRPGQVEMIFFSPSPSVVS
YQGVTLSGLASLPAEDIVFDLLIVNGSKYKEDMVSDKESQQGLMWLQNYA
QRYPQAAIASVCTGAFYLARAGLLRNRHCTTHHGHVDSLKLAEPSATVLE
NRLYVRDGPIITSAGVTTGADMILAWMAETFDDDLAQHIARELVIYARRD
GEQAQISERRRYRNHLDQKVHRLQDRISAAPELPWTAGQLEREVNLGYRQ
LTRRFRLATGVSIKQYQLILRLEAAQKLLRDGQHMNIERLAETVGFQSAH
AFRKAWKNRFGAPPSAYEGKE
>HCH_01492 Transcriptional regulator
MDEKNQRLLDLLQANAREATSSLARKLNLSRTAVHERIAKLEAEGVICGY
TVRLDKEYEKKRISAQVMIEINPKLNKQVETALRRIDEVRSLYTINGQYD
FIALIRAETTEQIDEVLDHIGEIEGIEKTMSSIVLSTKFER
>HCH_05758 conserved hypothetical protein
MRTFLRRLSILAYLKSARAPKSTEEIINHLISADYMEEGGDPNSQKRLIQ
RDMNFLYGKNEMEDEDDEPGNEFGLEVVRGVGKSLLWKLDPYSTLQYDYE
KMPQYMAIAFAMAKKHLSNLLPRNTISELERFFAQAEERLEQSEKSLSPQ
LYNRLRDSVEFYQRGQRLQPADFDIEHLDTIYRAILKNKQVLFTYRGKEY
RAHPFGVAILLPKIYLVAKKDEDIDTPGAYRHFLLHKIERITMDQRSSRV
PKKFRLRDYLEAGKMDVFIDPEDNSVYSMKLRITPANPYSNLISDLSENP
IAVDQKIKPATDESGSYILTAKVRRTIQLRNWLMNLGAECNVMEPQEIRD
DLISALRDTLSNYGA
>HCH_03181 Serine/threonine protein kinase
MRTVAGPGVDERGQIYMRNELMLSFGQWTDKGRKEINQDFHGGYVPKGAQ
LTVKGAAFAMADGVSSSSVSQIASETAVKSFLEDYFCTSDAWTVQHSAQR
VLRATNSWLYAEGQRSVYRYDKEKGYVCTFSAVIFKSDVAHILHVGDTRV
YRLRDGALEQLTHDHRLWVSQSQSCLSRALGFREHIEIDYQPLRLRLGDI
FIMATDGVYEYCDAHTLIEALQEPDDLDAIAKRMVDHALEQGGKDNLTLQ
IIRVEALPGDVDSLFQQQVETIPLPPILQAGAEFDGYQILRCLQTSRRSH
VYLALDIVSKTKVIIKTPATDQQGDPAYLERLLMEEWIARRINSLHVAKA
AQFERPRAYLYTVSEYIEGRTLSQWLRDHPRPDLETVRGIVEQAARGLMA
FHRMDMLHQDLKPDNLMIDASGIVKIIDFGSTRVGGVAENDQGVRQPNLL
GAALYAAPEYFLGEVGSPGSDLYSLGVLTYHMLSGGFPYGADVAKTRTAG
AQKRLTYKPVLSEERDIPAWIDATLKRAVHPNPHKRYTELSEFLHDLRHP
NPAYLNQTRPPILERNPVMFWQGVSLVLMAVLIWQVMS
>HCH_06593 AraC-type DNA-binding domain-containing protein
MHATQPIAVEHGVMSFNEHSEEASHAEHVLSLILDGSARIRHGDEITLGA
GVVTLVPAGMPHRLLSANNLEAWWLGFCAGCLSIDETHPLMSPFKRVRSG
MPPMIVIEPTRQARLLSLLADLREECQNNTPETGVVTRCLLLLILAEVNR
AMRADSPHTAPPTDSLTTRALEYIQSHCLEKISLQDVATAVHRTPAHVAA
AVKKSTGYSVGDWIARNKLQAASLKLAHTGESVEKIAVSVGWSDVTHFIR
QFKKHYGATPAAWRKQVRANHRPEEATR
>HCH_00177 protein containing QXW lectin repeats
MKKLAYAAAIAAAASSVCANEIEDFRNSWTYRALTHQRTLDLGEPLGRAN
FPYTHNSYNSSAYANLGSYWDPNHIYSLVDQLDMGIRALELDVHYTYGDL
KLCHGANDHTGCSAFDRRFEDGLKEVATWLRQDGNRGEVLIIYLEEHVDG
RYDDAVAALNRQMGDLIYKPGSCATLPMNISKADILNSGRQVLLIGGNCG
SDAWAQTVYNYGFPTDNDHFHPYPECRTDKYDLNFVQNNLVRIFEDSTRL
SDVFGDPPQPITPELMAQAARCSLGVVGLDQLKAFDERMTAAVWSWDQNE
PNNANNNEHCAEQWGNGRFNDAACTNARPFACYSKTHDAWAVTQSNAIWE
QGEFFCQQEFGGDYRFATPKNGYQNQLLQNAKAEQGYANVWLNYSDLAQE
GVWAPGDQPAVTLPGDDGAVVWRKLRNDKGKCLDLEGRETHNGVEIHQWS
CHGADSQLWWKDQYGMIHAKSAPDKCIDVSGADTEKGARIVLWNCHGGPN
QVWLQGPSNSFRISNATNMALDIKDPFWGDGQRAHLWEYHGGKSQRWSWD
>HCH_02787 Serine/threonine protein kinase
MTEDSRPSQDSLDEVVDPTQPQQVCEPTEIAPGMEPTQLAQASPPEEGAP
EGDEPTEPQLRTEPQERTEPQQQPAPQTKVVPQPATAVSSPSTSRRTDNT
ATGKASTWGVIPPAILQNYDLVEWLTTIGAEATVGIVTRHDTGEDCILKL
YNPNMRPKDEVVRYLLGNQGKHHIVNLIEAQFCMSTHRFFEVMEYVQAGT
LKTYLKSLSGPMSLTMVHKLLAQLHDALSRLHDHAIVHRDLKPDNILLRS
TSPLDICLVDFGISSLMNTESNRTSISRTERYAAPEASTGLKSAALDWWS
VGMIIMECLRGKGVFEQIDHETVVDHKILHDIDVSGVADVRWRLLCAGLL
TRNNELRWGTEQIARWLAGDNDIPVYRDLEPVKARRVSARGKVPEGAFRI
GLHDCMTLEEVGKALQSEWDVNPLVDKVLAKQLENWFSSQDNLEAAQRVR
HFAQESSDPNLRLFKFISYLNPNLKAKFKELELTREGLQAFLGQGAKNLT
RSNLETLTGVYRHNLLEQAGKTQRDVTLRQYAHNWQREVIAYLTSLKGLR
QQSGTETLMPRVEANPLLNIPLKFAEMGSFTQPGAFEKMPGMAFMAHVLE
AILKHQSPAELIAQIPVERFREASQVKWFGRIYRAEPTSIAEARFILDLL
PMAEAQLADEREEKRRYKRALIERIIFGSLWAAMSTGFILFTLRNHVSYL
QAEKGLVFGLMFSVLVGCIPFRPKYLLLHGLSLSALVCGLALVEGSPVDL
SSVGDMLSSIKRLGTNLAGPMQYLITLALGGFVAGIGIRQVFAKAPDGRM
GQRLARVAGLASAGGILAVIVLIPSPIATITGLGGPAPANGTVTQDLGPS
HSLFLYQHYSSWVKAESNTFTLQKRLKVNEDLRERFGSRYEQDVQKTRAQ
LNVAQDQAAQSLGEYKTALANACDQNLSAEKFTRHLKDNGVTTANLSDQP
VTRLLLDHLGQCISAAEAGDDELKDQLNAILN
>HCH_05785 Transcriptional regulator
MKNSSTRSKSRRDDILNAALKCFTQHGIAATTIDMIRAESGASVGSVYHH
FGSKEAIAAALYMLGMEDHFAQLKDALAECKTAEAGVKSVVRVYIEWITQ
NPEWARYIFSSRGEALSEEQQQKLKQDNKRHFTYLKDWFTPYLENGEIRA
LPFDLYHSLLIGPAQDYARHWLAGRVKKPPTHYVDIFCDSAWSSLTP
>HCH_01177 conserved hypothetical protein
MVPDSLLIEAKKYLQGILGSDACSDDWAKPWAEASQLPFFLQTAYYYFHA
TLFGQPWLLMLARSPEGETPAVVRKHWQVVSKLYNGDVIYMIAAVSSYNR
KRLIEHGVPFLVPGNQLFLPALGVDLREYFRPGRKAEVTHLSAPAQVVVL
REILNHDCSGMPAKDLAQMLGYSAMTITRAVNELTNCQLAMAEKVGREKH
LSFPYGGRSLWEAAQSVLQSPVTKRVWVSQLSHKSLNVNLMGRMTGESAL
AHYTDLADTHASQWAITSDTWSALTKSKDVQILASQPSDETSHLRKDREV
IELELWAYNPDVITSNKSWVDPLSLWLSFEANTDDRIEIARESLLEQVWS
TLSW
>HCH_04707 Cold shock protein
MSNTVTGTVKWFNESKGFGFIEQESGPDVFAHFSAITGSGFKTLTEGQKV
EFTITQGQKGPQAENIVPL
>HCH_02797 Transcriptional regulator
MQRANLDRIDRQLLDLLQQDARLTTAQLADKVGLSASPCARRVRHLEESG
LIQTYRAQLDRIKLGLGVTIFVHVRLSRHTESVVADFEEKVRNMDEVVNC
HTVSGPFDYLLQVVSADLPGYERWVRRLQSLPAVNNIDSSFAIRSVKEHG
PLPID
>HCH_01299 AraC-type DNA-binding domain-containing protein
MRKMNKGVPEIELTDRSAGTVRYIEHGFPSDLIRWHVHEEYELHFIVATT
GKVFIGDYVGLFGPGQLILTGPRLPHNWISKNDPESEVELRDMLLHFNHD
TIEQGIKVIPELSQLLPMLERARSGIEFIGVDLDEVRSRFAEIRDATGLA
RIVLFFDFMNELAAWPNYRMLSTMQINSKANETMQRKINTVVEYVINNIE
SPISLQEVAELVGMTDSHFSRFFRKATGNRFVEFLNRIRVSRACCLLAET
DEQVASICFQVGFNNVANFNRRFQELKGLTPREYRQQATQRF
>HCH_04962 conserved hypothetical protein
MEISNNVNSDLIWDLDLLADRSKAQEFVLKFENKLCVFSGSVRQIYTNYS
MHFPEDYNRNLVILPDPYAFHDTFSHIEEEAVTRTGFHIIPGELIKQKGM
FMLIQPKDPEAPAKPIAMRKALEVLNKMRTETDPFLPILVKGDLKPFQDQ
IPCLHLHRLRLPLIHRASEFEKSELRRVIQTKMQDIAEL
>HCH_04308 ATP-dependent transcriptional regulator
MTTSDAPEARPLIPSKFSPPQTGSHVLSRPRLEAALIDAASKPLCIVRAP
AGFGKTTLMTHWSRRQPGRIAWINLDELDNDPILFGRYLVATLSRQAPEL
QGPLSRVEGALSEYDLIWLTGKLCNELSTLDQQLVLVLDDYHHVHNEHIH
AALRFLIQHQPPALRLFILTRAEPPLGLANWRVRGMLHEIGTDELGFTLE
EAQQFLHEKNGLRVEDPQALQEALQRLKGWAAGLQIIALSAPAKDSLNDY
LRRFNGAHTHVLDFLAEEVLSKQPPERQAFLLQTSVLERFNSELAQAVTE
HKESFGMLQDLEKGGMFIAPLDEYRTWYSYHPFFAEFLRHQLQLQATSQT
IIDLHRRAYEWWLQKAQTAEALTHLLQIGDPMLIAEALSLHGWSLFEQGR
LSLIEQCLDVLPETVIANDNRLALLRAWVCLTQADPDSLEEALNQAEQRL
PDQQEEAQWRRVSAEISALKAQLYATVEDIEAAHNHARQALAISSSASNA
AAIALSVLGETHVCRGELDQARDAFMQAEASARAADSMHGLLWTLGQQAD
VLRHQGDLVGCHQQQTFILQLAREHHLAQTPVMEFIHRQRADLLIEWLQC
HEAAQHCDAGLRIVEHLEPHCAVPLNALKASIALQQGEAGAADTYLRKNT
LLMREYRCHSDWRALSASIQLRYWRQQRNLSAIHEWLSAEPPPSPAPSHF
QQRRARNLAFALLSLDRSREAAQILLPLTAQSRQFGLRLSEMENQILTTW
ACLRLGNEKEASDALLRALQLAEPMRAVASLLQAPEWLLDFYAFLLDDSR
LSSAERRHLQRVLELSKRQHRPQKKTRNMPEQARALALTPKEWEVLRLIG
EGSSNERIAERLYVAPSTVRSHIKHVYQKLGISSRVEARRVSLDLSQGRV
AGLGEQG
>HCH_05594 predicted RNA polymerase sigma factor containing a TPR repeat domain
MAFNKLRGKAEVPQQEENAKLSARQQLEAVYRAESRRILATLIRLLGDFE
LAEEAMHEAFAAATDQWEQAGVPANPRAWLVSTGRFKAIDHLRRRARFDA
SLTDIAERLYAEATDAEDKQNEDIEDDRLRLIFTCCHPSLSTEAQVALTL
REICDLTTEEIARAFLASPSTVAQRIVRAKSKIRDARIPYEVPSESELPE
RLESVLHVIYLVFNEGYSASTGDSLTRSDLSAEAIRLGRLLVELLKSKGE
ASEAMGLLALMLLSDSRRAARTDMKGDLILLDAQDRSLWNKAQIEEGVQW
VTKALSAQSIGTYSLQAAISAIHAEAPSAEATDWSEIIGLYTLLLRINPS
PVVALNRAVAVAMRDGPQRGLEIIDGIFAEGELHSYHLAHSAKADMHRRL
GQFEQARDAYQQALALAKQEPERRFLERRLEELAVSLKDV
>HCH_04888 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein
MAGSRNVTQLLADWQAGDSQALNHIIESLHGELRTIAGRYMAGERQGHML
QATALVNEAYLHLVDAEVAWNDRIHFLAVAAQTMRRILVDHARAQKRKKR
GGDDIQVTLHEAQICDDGSQPDLLDLEDILQKLSNVDERKARIVEMSFFG
GMTQEEIAEYLQVSLSTVERDLRFAKAWLVKELKI
>HCH_00827 AraC-type DNA-binding domain-containing protein
MRVGGDPAAGKLFRQVYGRETTLMTPQLDEPFIIANWVKMCLDAFEKQGL
DAYDLMQSAQLCASELQSPLAPVRTDKINALFDAVIAATQCESIGIDAGK
NISLTTFHALGYAVIASQSLWEGFSRVIRYNYGISNVTRLYLQTNGDEVE
LGVVREGDAPVHDAILDAAACMMVRICRFLTPQGTDLLRVSMGRDKPADY
ENYERYFRSPVSWGDSRYRLIFSRNYFHCRLPNADVLLANENERLCEIYF
GRLFNRKLTQRVRSLLRQTMATEETSLQKVAQTLHLSERSLQRHLSQEGT
NFRELVDEVRQEIAERYLKSSSMSISQIAYSLGFNDAGNFSRAFKRWFSC
SPETYRQSLQESPLL
>HCH_00648 AraC-type DNA-binding domain-containing protein
MTEQTVRPYVDSKAADSDSGEYMPIRGERPIVARAREFPSGYRVTPHKHE
CCQLIFATSGVMELVTDEGIWLIPPQRAVWMPPNVEHGMRARGDVSLRTM
YIQPHACPVSFPQKPRTLQISPLLRELIIRAMRVPSNYDEGGRDGRIMSL
ILEEIEWSGERPLRLPATRDSRLQNLCRAILANPADPRELKDWSTVIGAS
ERTLSRLFRNELGVSYQYWRQQVAALNAIPRLAAGDPVTLIAADLGYETP
SAFSAMFRRIMGVAPSLYFQRQSES
>HCH_05627 Histone acetyltransferase HPA2/related acetyltransferase
MTSDARVSPYEPVRKLAATDQVDAFDCGQVALNQFLQRYAFVNQKANSAQ
TYVCRLGDLVVGFYSLAVGSVDPEAAPSRVMKGLARHPVPVMILARLAVD
KEHQRQGLGQALLKDALLRTAQAADIAGIRCLLVHAKDDAARRWYESWEF
EPSPTDPYHLFLMLKDLKSLLD
>HCH_05695 predicted transcriptional regulator
MPSTLGRKLRKLREQQKLSLEQLAMLSGSSKSYLWNLENFESSNPSVEKI
DKIATALKVTSEFLLNGSATTPDQGVIDEAFFRKYKSLPEADKKRLRQIV
DVWTEEHTRQV
>HCH_06826 Transcriptional regulator
MITIKEVSDRAKVSISTVSRVINNTAPVKESTRKRVFKAMKDLGYRPNSF
AQGLVTNRSNNIGLVVTDLLGVFFGPLISSLERALRESGYNLIISVENYS
SEEIKETIDMLAGRRCDAIILFPYCLTDEELIALKEKSPPLVLLNRYVPE
LAGECVIVDNEQGSHLAVDYLASIGHSRIACISGPLGNEEGRARLSGYRR
SMENLGLSYDKDLVVEGDFTVEGGYVATQRLLKRSRDFTAIFACNDQMAA
GAMKALREAKLSVPEEISLVGFDDVEYASLLYPALTTVRQPVNAMGKRAA
ALAIQSIQGERRAQPAPMFEPELVLRDSVAPPKTSPAS
>HCH_05772 Transcriptional regulator
MSTAIKPTNLLELQQAITERYNDLSKRLKQIAQFVMDHPSTVAMETVSVI
AEQAEVTPSALIRFAAAFGYDGFSEMQQLFRQKLVENSTSYRERIRLSSA
QPVHSGKVTSHTILNEFVNGNLLSLEHLPEMVSGESMDAAIKLLHNAKAI
HVLGMRRSFSVASYLTYALRQIKRRVYLIDGSGGMLQEQAAFLDKSDVLV
AISYSPYAQETRAAVIKAYENGVPIISITDSRLSPLAPISSVYFDVKESE
VRGFRSLTSSLCLAQALVIGMAYQIEQQQLGDG
>HCH_03797 Transcriptional regulator
MDWNSLKILALVAQKGSMSGAAKELGVNYTTVFRRMESLENEIGGKLFER
GSKGYVATPLAEKMLVFANRMRDGAEQIERQIVGREFQPSGVVKITAPFN
IANRYLPEALRPLAQDYPDITFEILSSNDDFNLNSRVADIAVRATRSPPD
HLIGRKVASIPWAMFVAESFLERFSQPPTLDTLADYPLIGASGSMLNLPA
FTWLEKNHATSIVARCNELTAMSYCAESGHGIAFLPVDQRRSGLVELAEF
APGKTSDMWVLSHPDLKKTERIRIVVEQLVSYFRSLDF
>HCH_05811 Histone acetyltransferase HPA2/related acetyltransferase
MQTLTLRRAGAADAAALLPLIEQLGYSLTQAQLDHTLSILLHDSHAHFMV
AASDDNIHGFIQSNLKRTLIAGGYVEIVSLVVDESVRGQGVGGMLIESVK
EWAKQQGVYKIRLGSRIHREQAHQFYEGLGFTRIKTQHWFEITL
>HCH_05030 sigma 54-dependent transcriptional activator
MSKAKPHTLVSWIGGNDLKSTGNTGTDSQALGPLAATLKAHTFDAVELLY
NYPEEQVQPYLDWLQELVATPINAQSVSLTSPVNFDEIYIQTNQHLAGLA
SEGRLLSILLSPGTPAMQAVWILLGKTRYPCRFYQSSKEQGVQEVDIPFE
LSVEYVPAVRGLGSAKINQLSEAAAPIDAAFDDIITRNPRMLTLKAQAQI
LAQREVPILIYGETGTGKELFARAIHNASGRAGKPFIALNCGAIPPELVD
SVLFGHLKGAFTGAVADKSGVFQQADGGTLFLDEFGELESAVQVRLLRVL
QEGTYLPVGGTKEQKVDIRLITATHRNLLEAVANGTFREDLFYRVAVGVL
HLPPLREREGDLSLLAEALLASFREQDVGLEDKKLSAEAKNLIFKQPWRG
NVRELQSSLLRSALWCQGDTISADDIRQSLFQMPEKNTGLLDRDVNKGVD
IQELCDDLMRHYIPLALEASQGKKTKAAQLLGMNNYQTLENKMKKLNMI
>HCH_00999 Transcriptional regulator
MAYRETEKVRARKETIKLRLFKAAEELISEAGFKGASVAAIAARAGVATG
TVYRYFPDKSALCAEVFRHVTQREVDQVAASLNTPGGIDDRLRLAIATFA
RRALRGRRLAYALIAEPVDPVLDQERLNYRQAYAELFSQTIAEGVNSAAL
RPQNPKVSGAALVGALAESLIGPLAEQIKSYVPGLSSDMQPPITADHPII
IDIAEFCINAVGPIPKR
>HCH_04272 sigma 54-dependent transcriptional activator
MATSISDSRLPIEAQLAFIQDNPLMDLLDSFCEGSIIVDQKARIRWLSDK
YRLLLELPEDAAKYVGRPVEEAIPNSMMRQVVESGRPILLDLMRIRGTWM
VVTRMPIRDDQDQVIGGIGFVFYKQLDYMKPLVEKFGRLRGVPTTAEKQL
ADMRQAKYSFADFIGQSPVIRELIRRARQAAELDTTVLLLGETGTGKEVL
AHAIHHASVRAERPFVGVNMAAIPESLLEAEFFGAAPGAYTGADRKGRIG
KIQLADGGTLFLDEVGDLSLSLQTKLLRVLQEQEFEALGSNRIIRVNVRI
IAATSRNLKQMVETGEFRSDLYYRLNVLPIEVPPLRDREGDVELLVGNML
RQFCDASALPFRKPNAEAMQLLRTYHWPGNVRELHNTLERAFIFAEGTEL
TVADFAHLQGAGEKGNRREAVKPLSEAMAEAERNFLKQAMSACNGNRSAS
AKALGISRATFYEKLQKHELI
>HCH_04733 Transcriptional regulator
MKFQAPESLAEQIAQHLGRLIITGELRANERIQELKVAGDLEVSRGSVRE
ALLILERRHLIEIYPRRGAVVSDLTVNQVESLYDVYASLLVMLARKVAES
WRESDLAPVMNQVQQINRAVMNEEASFESVIDSGFSVMSYCLTLVSNPYL
EEILENLRPAISRTYHLAIRRKKGELYQSMNFYNGLLQAVQQRDFAGVKL
VIESFAEHQKNLVISILQESS
>HCH_03234 Transcriptional regulator
MSNLSTRGLIVETADQLFYQQGFEHTSFSHIAEAINISRGNFYHHFKTKD
EILEAVIQLRLAKTQEMLDRWEADGKHPRERIQSFIQILVMNKANIKRYG
CPVGTLCSELAKLNHGSLADSNALLTLFRIWLRKQFVLLGREADADQLAM
HALAFSQGVATLANVFKDEKFIKNEVNQMLDWLKLCEENITSSEPASAPE
PTGEK
>HCH_03627 Superfamily II DNA/RNA helicase, SNF2 family
MSIRDLINRLTNSSHDIDISWKVDPVEGLDFIFRPEALADIESRAINNPM
FGIQYAYLKGLHEEGVARNNANGYTIPAHFVAELDDDFCELFQLPRPYPG
LYRCRIKGNTGQAAFHVSMDAELPDGCVINDIALFGPFLKFTDEELYRLS
PPEWQALNALKRHIDLPADSKNEYENNWLIFQLQLAKKAGVPLNLAHFNK
LEISLPTSIGIAVDELPNGDLSLTPTFGADIAIDDIKTRLDQLPTNGDHC
ILRIKNRFVLLDSKRLEAAREILTSRHIPKEQVATFLRSPTAYLNAALID
LDTGFSLRVHGAEKFSHRYFGDVEKSGIDWFAVDKSIPEPFERIKDLVVS
EDNLAELNELISDAKNGGAELIEYADKKFDISDTENVSQTIDRIREALAS
SDLDKAPPALTDEKESDTTIKEQAVVSIDSNDEKEEFVSNIPLGGINATI
QSFATDNLKRSPYPHQSEGIKWLLAHMDIAIEHDAPKGALLADDMGLGKT
YMALVAISEWLRRQKPEGKYDKPVLIVAPLSLLENWQAEVNETFIKSPFS
DIVILQSGSELSRFKIKGASRETQQVFEDKDIIEDYEQIRYSLKVGGLYG
SDRLDMPRRLVLTTYQTLRDYQFSLSRVDWSAIVFDEAQNIKNPNALATR
AAKGLKADFKLLATGTPVENTLKDFWCLMDTAVPGLLGAWQTFREEYISP
ITSADPDSINNEKLRIGKALRDRVGDFMLRRTKEEKLPGMPEKTIYSGDP
NDLTDSYLPTLSGMMSGAQLKYYDEVIASVHGRKIEDKRRIVLPSLLKLK
IACIHHDIGSGYTPSNSPKEFLRHAENSIKIQAMLDVLKDIEKRQEKVLV
FATSKAVQAYTSALITTLFKIQAPIVNGDTKAVATPKDDLTRKAIIDRFQ
SEKGFRVLIMSPIAAGVGLTVVGANNVIHLERHWNPAKEAQATDRVYRIG
QKKNVNVYLPMALHPNLSSFDIQLNTLLNNKVTLSDAVVAPTSVQPEDFS
IFK
>HCH_06726 predicted transcriptional regulator
MRASRLLTILMTLQARGQTTAPMLAKECGVSLRTVYRDIETLSALGIPVY
SERGAEGGYRLLDGYRTRLNGLSSQEAEALFLTGLAGPANDMGLGAAVSA
AQTKLLAALPQELRSGAERMQSRFHLDAPAWFSEAEHPDHLRDITQAVWE
QRTIEMRYQSWKGEKQRRAEPWGVVLKSGSWYLVAQVDGDLRTYRISRIL
ELTVSETRFERPSDFGLAEYWRANTLRLEEELHTYVAEVRLTEKGVWMMD
ALNSPYVRAATIIDPTPDAQGWRKATLPVGTLRQACVELLRFGAELEVLG
PPELREKMASIAEEMAQLYAQSK
>HCH_06852 Acetyltransferase
MEYQYKKLLVGDNEFYFQMLDCFGKAFEDLETYNGQRPDYDYISELLGRD
TFIALVALNGGRVVGAIAAYVLEKFEQARSEVYIYDLAVDEKHRRQGVAT
KLIEHLKPIARDKKASVIYVQADYGDDPAIALYTKLGIREDVMHFDISVS
EDEM
>HCH_04177 predicted transcriptional regulator
MKKKVAAPHSSPLSPSDLMGAALNAEAAAALMQALSNPHRLMILCALSEG
ERKVSELNQFVELSQSALSQHLAVLRHQHLVHTRKQAQAVYYSVAEGPAM
AIVKLLHRHYCSNAASTQTTQGEPHDR
>HCH_03406 predicted transcriptional regulator
MYIGKLAKLTGTTPKAIRHYEALGLLPEPQRREKYRVYSDDDVEAVTLIK
QAQSLGFKLSELRKLVEGVNVSEGFPFDAAIAMVKLKRETLHEEMQAIQS
LDKRLKQLQEDLQNSSCRC
>HCH_01108 Transcriptional regulator
MVLKTNRVENPGRIRQKNEMLILRAAEIEFARHGFKGATVQQIADTAGLP
KANVHYYFKSKHDLYLAVLSDIVELWNSAFDAIRPEDSPADALGRYIRSK
VMLAKTHPLASKIFATEIISGAPTLGKYLKSNNRQWVREKSAVIQSWIDQ
GKIDPISPEHLIFLIWSATQHYADFSTQIEAVLGRKKLTSKDFDFAADNL
IRIILKGCGVKTP
>HCH_00579 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MRVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLV
DRMLPELDGLSVVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLV
KPFSFSELLARIEALLRRSQQQQDVVTTLKVADLEMDLLARTVKRNGLSI
DLQPREFRLLEYFMRNPGQVLTRTMLLEKVWDYHFDPQTNVIDVHISRLR
AKIDKDFETPLLHTIRGAGYVLREAA
>HCH_01593 Transcriptional regulator
MYIAAIDVLSLWTFIVMYVVVIQVVAGALRLSALKIRVFLNINKTNNTNL
SLEKLIMLDYKLLQALAAIVEGQGFEKGAALLGISQSAISQRIKLLEARL
GQPVLIRSPGLTPTDLGKRLLNHVQQVRLLEHDLLQDVPTLGAEALRLRI
AINADSLATWWFPVMGDYCQREGVLLDLVIEDQDIGLKRMRDGDVAGCVC
SAEQAVQGSRCVYLGTLVYRAYASPGFMSRYFPLGLTADALAVAPVINFG
PDDQLQHRLLHSLGYQGAFPFHLCPSSEGFIRMSEAGLGYGMMPEIQAQE
SVMAGRLVEVAVEHAQKVPLYWHYWRQGGDMLEGLTRHLCTAIPLNQGEI
KVK
>HCH_04242 Serine/threonine protein kinase
MSDTQIFDPASMDSQYFGKYKAQRELGRGAMGVVYQCFDPDFERIVAVKV
LLPELLGADVTGEFRERFRNEMRAAGKISHPNVINVFDAGDQDGAPYFVM
EYVEGYELKSALDDGQRFPIDKTLKIMTDVLSGLGHIHEHGIIHRDLKPA
NIFITKNGVAKIADFGVAKLESSELTRVGTIIGSPRYMSPEQCQGLPVDA
RSDLFAAGIIFYQLLTNEHCFNANSPTAIMQKILHAKPELPSMLIPTLSK
YYDAVVVKALEKSPEKRYQSAEEFIQALMQAADGKKGGGVKGPMFAGVGG
LLAVAAAGLLYVLMPPVEQNGVSHPVEPVKLTPRTVNGTEAAVSQANTDN
ADNHNVNGGNTSSSDNSQNGSISSNAATGTTNPVRPASNEVQSLNPEVSA
KIDRLLKVAKVHRLQGRLVTPSGSSAYDAYKIVLEIDPANQVAQEGLKTL
EHDLVVRVGELRDQGESQMALAEATTGSQLFPTSEQLSKLAAQLKK
>HCH_04934 conserved hypothetical protein
MMTKSETNSLRDLVKVLNDGIDFYTEAKDKVKSNAVRLVFERMSAIREGA
VGRLQPYIVFEKGEKETGHTLGGILREQYAKILASIKDNSEHVYIEQLEE
VEDKTLEKIRDAIEEVKAPGVQATLQDIYPTLKRCHDEMSRLQRTTA
>HCH_06683 DNA-binding winged-HTH domains
MDGKGIDSEVASPVLNNRGKADFDDAMEEYNIAGVWLFNPRNQTIARADG
LVHQVRAKTCDVLALLIRHHDRVVTTEEFFDQVWEGRFVGENVLKRSIFE
LRHIFEDKSRDYIATAPKRGYRLKAAVALVRPDPPEPETMTPPASAEAEQ
APSDVTVSPAPVATIPTASWYSRLDLKRLAVGGFFLFLLIWGMTQKQALR
QAQEDNLQLQNDSAQMNRFMLDMLARYKTTGSRHESALKAMLDEERPRID
QRKLSPAERLRQLRFLAACYLAGGHYADARMVLDQSVRMGEEIHGQDAEE
VIRIKFALVETLVAMNERQAAYDTARYTLDLIRTAREADKELLAHGYYWM
AMAQLECIYPYCDRPKALASGKQNAEAAMALFSESLGADATETGDALWLL
NWFVTDSARKVEISRRALDIYQANLGELDEKTAAAYAELSRTLATWGGDL
ESGERYMLKALAIRQKLYPENHYQVGQTYRYLGEQYMFMNQPELAAGYFV
KASTVIGAVKGAGDPENLEALMWLAKANLYREKWSLAESAIAQAMEIIAS
HQITPPYYLLQEMKAVEMRVKSETLARESSLDELMADIKLNRMLGLKAKN
TFATAVVEHEYQTLLLRKEPGWLDETRYIDTFNLFLDDYLRLNRYFVQPD
LQFVASRSMRLCRRKSEALCGSLMEALQRRSLDLPEQVIAQSDSGELVRT
SVVEPF
>HCH_05143 Transcriptional regulator
MSEIFSFTLARLNRRWRKLLDDRLSDLGLTQSRWVTLLYLQRLGGDLTQK
ELANALSIESPTLVRLLHGLEESGLVTRTCCGQDGRAKRIRLTAAAESYL
ETVNERAAALRSEMLAGVSPQDLELCLQVFARIEKNASELN
>HCH_04389 Transcriptional regulator
MHYTLRQLEIFLAAAHFENITQAAKSLSMSQSAASDALRNLESQFNIQLF
DRIGKSLQLNELGRMLRPRVEALIERARDLELDFQQHTDIGSLKVGATLS
IGNYLAVSIMADFMQQHPGAKVSLEVANTTTIAGKVLNFELDVGLVEGEI
NHNELEVIPWRDDELKIFCAPDHPLAQKKLLDDEDLVRAHWILRERGSGT
RQAFEWAMHGILPDLKVSIELQHTEAIKRAVEAKLGIGCLSRVTLVDAFK
RGSLAPLEAPHRNFQRRFYFILHKEKYRSAGIDNWLELCPQLT
>HCH_06043 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MTPVFSNCAHNHRLLLVEDDQELASLIQDYLTKNGFQVAVVANGLDAVRE
ILTQRPALVILDVMLPGLSGMDVCRQARLDYNGFILMLTALDEDMDQMLG
LELGADDYIVKPVQPRLLLSRIRALLRRLEHTGRGEGVAATIQDSSVISA
GALTIDLRNRVVRLGARSVELTTAEFELLLLLARSLGEVVDRDFIIQELR
GFDYDGLDRSIDRRISRLRKKLQDGGAGQDIIKTIRGKGYQLCTDPDLAG
GR
>HCH_06078 AraC-type DNA-binding domain-containing protein
MIGQSYGRESHPYGFELEGERHQPEAMATAHQHCHLEILILTRGKVEMLY
GQQTMILSAGELLCYSALHFHQFGAVSDDAVAYSFRLPLFALFNLQLSCG
VKQQLFHGAPCRARCAGLVDDTMLARWVAELRLRDPALDDLILDEITLLL
RRLFKDACFTPPDQQIPGVSGLKVSQHIPVMLQFINDNYHASISVCDVAD
HVGLHKNFAMTLFKKTLGMSILEYLTALRVHHARRMLQYTGEQVTQIAYA
SGFSSVTRFYEVFAKYFGESPQKYRKSCALVGDD
>HCH_04805 Transcriptional regulator
MRAFCAVVQEGGFSAAGRKLNLSKVLVSKYVGQLEDRLGARLFHRTTRKV
RLTPTGEAYYLRVSPLLRELDDIEARVRDEHGEPEGLLRIAAPASFAEIH
LMPLVALMLEKYPGLTLDVRLADRYVDLLEEQVDLAVRIGYLQDSSLVAQ
KLADIPIVWCAGAAYLERRKAPQSPDDLAEHCVIFDSNYSGGDYWPVPRE
GGVTRQPMRKRVSVNSARAAKELALAGMGLARLPAFVIGDELASGELRPV
LQEYWPEASAVYAVYPHRRHLSARVRLFVEEAKVYFGTNPPTPPLV
>HCH_03174 probable transcriptional regulator
MTDRDYEEMQIGEWRINVETNRLYREAAEHQLSDKVCKVLLALAENPGRT
VSRETLIQKVWNENEYVGEQALNTAIWQLRKAFNDSSEAPEYIETIPKKG
YRLLKEVSVIPYAPRQDITPPPSAEPAPAPTPEPETSTPDNAPEPPPEPI
TEVTPYPHTMTPGAPPRRARSMMLGGALLLLAGTALIGKLMYGREDAPPA
QAYWCGVDTGRMERLGIDPASACMLETEQGQFGLAIGERMAKINSSYYQS
PDAGDIAGDIFFCESNHKRLGHKSNTLLSFVTLKNHCMTQRDGEVDIAER
SGARASLVCAEYQPQSIHLQTPTAEKHCPLPPALTMNHPNAVKDPDYWYG
VRRDELADFGIDEDASCTLNAEDPTWIDTIEFGWIWGARRCADSGSNPVG
CGVVSHNAQRTGATVSDFFTQDQLHNHCAAGADKLALTPAGWWRPEHNDK
TSLDAYLLCEQQQPKAIQLSFKPVVGAVVEKTCALYY
>HCH_05140 Transcriptional regulator
MNQEQKLESVATRTPQGRKAVISREDVISAALKLAGPHRSVSTLSLREVA
REAGIAPNSFYRHFRDIDELAVALIERAGASLRKIIGEARNRASMDTSVV
RSSVEAFVEQLSADEKFLHILLREGNVGSDAFKYAVERQLCFFEEELCVD
LVRLAKSKGTGIMQPELVSKAITRLVFAVAATALDLPFEKHAEISDQLER
MIRMIIVGSQVLAEIEPNPAVVATEMASVRAFLERPEI
>HCH_01147 Transcriptional regulator
MGGLVRPQTGRMKLLQAAMTLFEANGYFATTIEQISQQAGVSKGLTYNYF
RSKEELLIALVEDATSRMASVSSELSEGRSASESVASFLNVFFTFLKTEK
TYLKLQLTILHTPELRKIVDAAVKQRAEMLLKQVSRWMKDLGVEKSRDNA
RIILAMLDGVALHYLSIYDKYPLDAVQKQLTRNILDLCRQHKDE
>HCH_00114 Serine/threonine protein kinase
MGVVYKGHDPDIDRPVAIKMLHAHLMVDQSDGGLLARFRQEAQAAARCLH
TNIVTVFDFGVFKNSPYMVMEFVDGIDLRSFLRENMQLSVRQIGDLVIQV
LEALDYAHLKGVVHRDVKPANILLLESGHVKVTDFGVAKLDTSELTNVGD
VIGTPSYMSPEALRGDRVDGRSDLFSAGIVLLELIAGKRPQKGGLPWTEK
EILQFIADSPTLPVQLDRAFSSLLAKALTADPSDRYETGQEFAIALKTLL
APNQVYVPDLNDLAATVIQSKVTFAGRQSDQPSTYSSSSSSQIALSPEVS
LILSQTLAPFLGPVAHHMIRNAAASSTTLQEMIEKLSRHIPNEVERRNFL
NTLNRTGIRSMPSETTGSGASRITTIGSRSSIRPGQAGPLTLSGETLQKL
TQLLAHHVGPLASRLVRKSVKSSSDMETLFKDLANSIPDESERTQFISKA
RKSI
>HCH_05056 predicted transcriptional regulator
MSAFGAKLRELREARRLSQLELSLEAEVSARHISFMETGRSKPSREMVLH
MGRILGVDMATTNSLLTLAGYSQVFGERRLDAASMAPVRKALEQLMCSHM
PYPAIVLDRHYNLIQANAAQLFLMQRLMAAGMAISETPNFMKVFLARDGL
RSFVDDWELLACHMLQRVWREHTLEAGSAEDEAFVEELLSIEGIPSDWKR
RNLESLDSLVINVNINLDGVKLRMFSSISSFGAPLDITVRDIRIEHFFLL
DDATEAYWRTHCEGL
>HCH_06913 Transcriptional regulator
MEQTIRKNAVKKKRLGAQPAASTVTEVAKRAGVSVSTVSRILNGTARVSD
DKRRSVERAIEDLNFKPNVLAQSLKSGQSMTIGVITQAVESPFFNELLKG
IEEGLQGSGYASLMASGHWNSQSEIERIRLLIARRVDGIILLTGNLNNEQ
ILDLATQTPIVAVGHNAHSENAASIFIDSRMGGYLATKHLISLGHRRIAH
IQGPQEQNDASNRLHGYKMALEEAGIAFDEDLLAQGDFIEPGGLMAMNRL
LDKGVSFSAVFCANDQTAYGARLALYRRGLRVPEDMSLIGFDDLPMSSYT
TPPLTTIRQPVYEVGQTAAKRLLRLIRGEGAESVNLNVELVIRESTRRLG
>HCH_04881 AraC-type DNA-binding domain-containing protein
MQPKLIRLMQREEKESVMLPFSVYRCLQPQNLHGVPFIDPCLIIVLRGAK
VLSLQPELACRSGEFILAPAGIELQFMNLPEGEYIAVVIGFCASDLEAIP
VSAPPDRDGAAIARVDRTLAEFLNQWINWIDVSPPELWALRRKELAHLLY
ARGYGSLLKSRSGASWRRKVSEVLMQEPAKDWSLLEISRLLAVSESTLRR
RLQSENAGFRDLLESVRLGIGLHLAQTTLLPIAHIADQCGYQSQSRFTER
FKQRFGMTPSELRQTRLEELGEGILT
>HCH_03867 FOG: TPR repeat
MIKRQIHPLRPFKIGDWWVDPEANKLADQDCEISLTPKAMTALLALVEAQ
GRSLGEEQLQEKIWSSSAQPDASVDQIISQLRKAFGDNGRPRRYIERDGS
TYRIVAQMSQPDVDGLCPHSHAKGRRRGLCKWGISVGALALVFALGFGVF
YPKSQAPSQIIVYPIQLVDASHHRDSAYLATSVTDAIRSRLATLGGARVV
FSETAPWSRPDRGSAVSGSLQITGSSLRLILNITDLAGRDSQWSGLIEGE
VRKLYSFHQDLSEALLSQLNVPNDEFSDRREPDPEAYDYYLQGRHYWSQR
DVHSLQRALQNFSQAISLDGQFAPAYVALCDSYHFLSVYSDMPASTVSEK
CAPLLDRAFALNPGMPQAYASRALQFSEQGRESEAEGFYKKALEMAPNYA
PAYLWYGQLLRSQGRFIQSLAMYEQALELEPFSGGINRGKAYTLLRMGRL
EQARDTYQRALALEPDYLYRPLDQLEFLPITVETATDYFNWSRMYPHVIG
RQPNNKVTEAILWMALGDMKKAQELLIQVPPGMRTGANYLYARGLQYSIN
RDYDAALSVFQQRRSQQPGNRSYALPVAATLIKLGRNEDALEELDRYYPK
LGANKTSIDSENRFPYLIACYLRHIIGQKSPQYLHDELKQSVSYKIVEAM
DIPEWFVYENPAKLFEILRAQLMSGWLPDYNQFLWAPEQWPEWSSFTRDQ
QEEVTSLLRRNRQSVLRESGREDKLNASLDKRSVKETTALN
>HCH_05435 Transcriptional regulator
MSIAIRKTEPYSSVFAFYSDMTDKHKGNLTTTMALNPQRTEQILEAAKNV
FHQSGYARASMDRVAKEAGVSKATLYNHFKSKTVLFQAVVSSASARFIQE
LSDLQTDERRLEPALRIIAERFLTFLLCPHNLAAIRMILAEIQADPELGE
AFYQSGPAVAESAIGSFLDKRMRKGEIPQTDPVRAGRHFMALLRGDLFWR
ALLGVALPQDEINAHLDSVVKQFMQGVAGMAANHGNADIRNNPASGS
>HCH_05728 probable transcriptional regulator
MPSTSVGDALFTKAQQKLLALFFGQPERSFYLNEVVRLAAMGRGAISREL
SKLCESGLLTSSKQGNQNHYQANRASPIFDELVNIVKKTFGVSGVLQSAL
APLLPRLKLAFVYGSVAKGEDNAASDVDVMLVGEDLSYSEVMQMLESAES
ELQRTINPTLYTLTEFEERLADGQNFLTKVMAQPRIDLLQGMEKNN
>HCH_06313 Guanosine polyphosphate pyrophosphohydrolase/synthetases
MPTIDALAERLKTYLDNHHINVVRRAFYYAEQAHEGQYRQSGEPYITHPL
AVANLLADLQLDHQCLAAAMLHDVIEDTGIPKDALSSQFGESIAELVDGV
SKLTQIEFKSKAEAQAENFQKMTLAMAKDIRVILVKLADRLHNMRTLGPL
KPEKRRRIATETLDIYAPIANRLGIHTMCVELEDLGFQAMFPMRAKYIQE
AVRKLRGTHYEIIEEIKHKLEGKLKERGLSVRIQGREKHLHSIYQKMKAK
RRSFHDIMDVYAFRIITDSVDSCYRTLGVVHGMYKPVPGRFKDYIALPKA
NGYQSIHTTLFGSHVNIEIQIRTEEMDKVANSGIAAHWVYKSATSDLADN
QQMRAQKWVKDLMELRERADDSLEFIEHVKIDLFPDEIYIFTPKGRIMEL
PGGATPVDFAYAIHTDIGNSTVACRINKHLASLSMPLKSGQTVEIITAPG
AKPNPGWLNFVVTGKAKSNIRHYLKQQRQSESRELGRRLLKKNLQAFGKR
LDDINEQHKEKVLKHNQASSFDRLLEEIGLGSRMAYIVARQLVSDGEPTE
SHDMEYREDDNKPSLMVEGADGQVLNLAHCCKPIPGDPIVGVINRGAGLM
IHSETCDKIKKFLHDPEHCIHLTWAKNITDEFSVALRVEVERQRGVIAEI
ASAVTMADGNIEKINVEEQNARLSVVSLIIKVQGRIHLARVMRRLRHLLA
VTSISRVKH
>HCH_04770 Transcriptional regulator
MTMNITASKNSEALQELEQRRQPVQERSRERVELILNEAAILISEVGVQG
AKTSEIARRAGISLASLYRYFPNKAAIVKALAERHIKTLSSVMEEFVSEF
DLEEGFDKLIDTFAHFYRSEPGYKEIWSGVEAMPELQQLDLGELFDNAQA
ITNRAKLLYPQVEQERLWLICVMLPRACGAILRLAMTMEEKPESIMLTEL
KLMVKSYLRQRLGELDAAA
>HCH_04392 conserved hypothetical protein
MKALYEKVRYPEDASWRFFLRQLDELPFQWHYHPEYELTYTLNSAGQRYV
GDHVDRYESGDLVLIGPNLPHSWRSSQRPDEDKPHTVYVLWFNQQWVDRL
LENFPEYGDVGDILKQSRRGLTFSPTDHASVERLFTALPTQGPKERLLTL
LSLLGGLAQIPHTPLASANFCTGTTSRREQDILDGILDCAHLAFADKLTI
EDMARRHNMSVSKFSRFFSKHMNQSFNQYLTQIRLGQACSKLINTAAPIA
LIAEQTGFNNLSNFNRLFKKHKGVTPQGFRKRFTAAGQ
>HCH_02677 Transcriptional regulator
MSQSDTVDRILDAAEQLFAERGFSETSLRQITSKAKVNLAAVNYHFGSKN
ALIQAVFARFINPFTRILRDRLQGVVAESRKVELEELLQIVTSSVIDIPA
RNSKSLSIFMRLLGLAYTQSQGHLRKYLEQQYSTEFRLFMRLLKDATPEL
NAVERFWRIQFMLGATAFTMSSSEALGSILEKELGVKTPVIGIVNQLVPF
LAAGINAPSDESRHTSAEAASAG
>HCH_02756 Transcriptional regulator
MKTRERIIHISLELFNRFGEPNVTTLQIADELDISPGNLYYHYKNKTEIL
HELFARFEQQMLELLDVPNVEIGIEDQWLFLHLIFERIAEYRFLYKDLVN
ILQRYERIRPRFKKILHKKTEASLTICSSLRDQDILIGSDEELEALCNNI
VLTITYWPSFDLIRHPADAQDIDLSHGVYQVMSLVAPYLRDGERQALMAM
SREYLS
>HCH_06808 Transcriptional regulator
MRMLPPLNAVRTFECAARHLSFTKAAEELCVTPGAVSRAIAGLEERLQTP
LFSQHKRRLQLTAAGRAYLFHVTQALDRLSLGTDELLQHRGEGGLLTIGA
LPTLGSRWLIPKLQDFQLRYPNISVEVKTTPSDFSKAFTELDLNEHGLDV
ALYIGQGDWSGVRRHKLFPERLLPVAAPSLREELEALARGEADPGRLLLH
STRPHVWAHWFNAQGFDFTTPTWRARFEHYYMVIEAAVHGLGVALLPEVL
VAQELRSGALLALSQRGLPQPENYYLLHHPARSEENKIRAFRDWLMRTEG
ARGNPL
>HCH_01303 Transcriptional regulator
MKLPDISTELLQTFVTVVDSGGVLRASERLFKTQSTVSMQLSRLEERLGV
ALFKTVGRRKELTPEGETMLIYARKILDLQNEALKAIQGVQFEGELTIGI
SRSLVDGDLTNELSKFAMQYPLIKLNVRSASSMHLHNAFEQEEFDCIIRL
TQDPSADELVLSKAKMVWVASDKFQFDPGIPLRMANFTTPCQFRSISEKA
LKAAGIVWQEAYTTNNLNALMSAVRGNLAVSARTQHALQPGTRVVGPEEG
LPELPEIFVVAQTRGSSRLAEFFISWLAPRPPVAA
>HCH_05799 Transcriptional regulator
MREAVAGVDAHQPYHHGNLRNELLDKALTQLKQVGPDKISLRALAREIGV
SQTAPYRHFADKNALLAALAAQGYRELQRVTQEAADAHSDPSHQLCHSGN
AYIQFARDNPELYKLMFGPVIACPMDYPELAEAGSSAFQVILNIATKGVS
EGVFTDRDVSLIAHAAWSMVHGIASLWIDGMYKCTESSGEKSMILDSLKI
SLYGILKRDGD
>HCH_03237 Transcriptional regulator
MKVMHICMEWRPVNFDWNQARAFLVTAEEGSLSAAARALGISQPTLSRQV
SALEKELSVALFERGSKGLELTPNGLALLGYVRAMGEAAGGLSMAASGHA
RSVEGTIVISATEVTAAFILPSIIMKLRALYPGLHIDIIASNIASDLKRR
EADIAIRAFRPTQPDLIARKLSDIKAALYAAPSYLDRIGRPKTPKEFSNA
HFLGFSTNNDAYIKALKEHGFELSDKNFPVKTDGHLAHWEMTKQGVGIGV
MPIEIGDTEQTVERAIPHYEVFKGESWLVSHRELKMNLRVRTVFDFLVGE
LS
>HCH_01575 Transcription elongation factor
MRKEKIHQLIIAKLQDDLAVAQQAANTAHATATHEESVAENKYDTFGLEA
SYLAEGQSRRVREFEAALASYQNTPPKHFTDQDEVAVFALVTLEAEDGSE
RRLFVGPEAAGFKFLLDEQEVLVITRRSPIGMKLMGKMVGDVVALVAGNG
EKEFEIVEIE
>HCH_06801 Transcriptional regulator
MKLDDSLGFLLNKAAGEMKFALETALRPYDLTPGQWSVLARLRQNDGQKI
SELGKSLFFDRPTMSGIIRRLDVKGLILKVPDTSDQRAYRIHISAKGVEL
MGELPILAQDINARALHTFTPEEASQFKDYLRRVLKNMS
>HCH_06281 predicted transcriptional regulator
MANLLGAKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVKRPSAEKL
TLIAKALDVTTEFLVDNSQAEITEDQEKEVFFRKLGGLDKGDRDKIMDMI
DAWSKK
>HCH_06905 Transcriptional regulator
MPTIIDVSELAHVSKSTVSRVVSNKGSVSPAARKRVEDAIRKLGYRPNHF
ARGLKSNKSDIIGVVVVNLASPFYAQMLSGVQDYISGSDKHLVVTSGYGD
LDREVAVINSLLDRRCDGLLLYVENEVPLERLAGVHPGNYPIVTMGRMLP
GISKWSARVDNLHGGYLAARYLLEKGHRRIAHLMGPESYLDARLRRDGFL
RAMAEQGLSERDYLILSGPYEETFGYQATLRLLDGGARFTAICAGDDDMA
AGVYQALRERGVSVPEQISVVGYDDNFHAKLMCPALTTVRQDVMEMGEAA
VKLLIERLENPTMAEKHVVLEPKLIERDSVRDLN
>HCH_04796 Transcriptional regulator
MKKLTLKDVASELGVSTATISNAYNRPDQLSAKLRSHILKECLRLGYNGP
NATAASLRRGTSGIIGVMVADRLHFNFTDPVASQFLQGVAEVFDSNGVNM
FLLPTRADYYKHRSIESVPDAFIMYGRPNDESIVERILQQQKTLITVDFD
LGESHASINVDNFSGARESAEHAFRRSDGEAAIIGLRLLNINEVRRVKDA
EMFSDEISISRRRLNGYLAAAEAMDRSIRPDMIWHTPDSNFQNGYQAARE
ALSASPRPRILLCMSDRLALAAIQASLDLGFKVPDDVKIVGFDDIPDAAH
WRPSLTTVHQPSVAKGRLAAQAVLKGDTSNNRLLTAQLVVRESC
>HCH_03322 Transcriptional regulator
MDKLQTMQVFIEVAKQQSFSLASEVLGLSAPAASRAVAALEERLGVKLFN
RTTRLVRLTESGARFLQDAKRILEDLEEAEAAAAGTYAKPTGTLVVTAPV
LFGETYIMPIVTDYLAKHPGVSVKIILLDRVANLLEEDFDVAIRIGRLKD
SSLYATTVGHVKKIICGSPEYFKRYGYPEKPEDLINHSVIFPAPFEYTNG
WHFQINGNKELVRLTPRLRCNHNGAARKAALLGHGLTTLMSYQAAEDLKA
NRLQRVLTEFEEEPLPVNIIHLEGRRANAKTRCFIDLAAKKLRENPFLFL
Q
>HCH_03527 predicted transcriptional regulator
MPTSTRFAVAIHILADLALHKGKAVRSEDIACSVNTNAAVVRRLLGVLAE
AGMTRSQLGVGGGALLARPADAITLLDVYQAVEEPNYFVLHRSKPNPKCY
IGCNITSVLEDEFQRISATMDASLAQTTIADVARQVADNAGMHYHCANQQ
VSEDVD
>HCH_03332 Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
MGYKDIYDRFISAIHRGDLKPGERAPSIRSLAQELGVAKKTVESAYDILI
GEGYLVSRGPRGTVVNPDLVIDSAYWNQSPTRLEDPDLRTVVDLRDTRGF
FQLGIPSLDEFPYKKWLLLSGKAVRSMTYEDMNYPPVMGHLPLRQAIANY
LSISRGVNCTADQVFITNGYNSSLRLILEAMASSSDKVVFEEPGYFFGQK
LLERRGQNLHYAPVDSEGVNVDFLETHHNDAKLVIITPSHQSPLTVSLSL
PRRHQLLNWAQERRAWVIEDDYDGEFHFSRKNIPSLKSLDVFDRVIYVGT
FSKTIMPSLRTAYVVIPKALIPQFYETAEIVETGLPLLPQRILESFISSG
AFFKHLKRMRSLYESRRRMVRDAFIEIYGDFFDMPLQNGGMHIVAFLKHG
AQDRELCHIWQSHNLQVLPLSMCYAQKKHRKYGLVIGYTNIKSKQEAISA
LRLPYQQTLELL
>HCH_00465 Transcriptional regulator
MNQAAAYLSLAAKLQQRIVNGELPAGSKLPSERALCGQFEVSRVSARDAL
HALESQGLIYRLNRMGWFVAPPVFIYDPTRSSSIQEEAISQHRALTTELL
SAAQETPPIQVSKALKQAPTQSAVVVTRRRAVDQRWVLLEICYFRESAFP
DLLSHDLAKSLTALVREQYGYRARELDVSISSSPLSPSHAQHLQVREGCP
SLKLERQVKVAGEPIALEREFWLHDAIEMRVKGQGS
>HCH_03832 Transcriptional regulator
MKDLSALQNVALFVEVARTRSFSRAAENLGLSTATLSRRIRALERESGIS
LFTRTTRRVELTEAARRYFERCERLVDEAFSAQEALFEEAKRPQGTLRLS
MPVDLGVHYIAPLLPEFARRYPGIDFEIDLSPQHRDLASEQIDIAIRLGV
VKDQNLVSRRIGWIEQGLFASPTYLQRQPAPSHPEQLSDHDCIIIGAQAQ
AVWRLQRANETVEVAVKGRFAVNNVSLMRVLAERGFGVASLATVLARDAL
AEARLIPILTDWTVPRLPVQAVTSSRLPTACAKAFISYLAERFTSI
>HCH_00304 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
MNNRFVITDDHGIFRSGLKLIISGLYPDAEILEAASGSEVFRLLNANTDV
DLVLLDLSMPDSQGLELLRKLKQEFVMTPFAVISASEEAALIQGAIQLGA
LGYVPKSSSNAVIASAIQLMLSGGVYIPHELLRTGHDEGMPTGDICLTPR
QHEVLGLLAEGMSNKQIGTKLSIAPGTIKAHIAAIFRELNAANRTQAVHR
ARELKLL
>HCH_03538 conserved hypothetical protein
MESYYQTILNLIAQSPNSDSLFQSFLRLLTESTGCDSAVFLITDLNNLGD
SHSDYIYNVPVEHQNIYESYYDQIDKTNETISTCRQDLVFVQDLPEALTS
REVENDFMAPNGYKGRAAFAFPRSNNYVTNLYLCRDGDFSENDRKRLARS
THSIRLAVQEILNNERRKNFARSLLNATGSLGGLLGYVIVDDKMNVVDMD
SDLVFLFVKKQIKIENQKVHIYEPGLANILDMSARFGAMMTYPATDSDFT
YDIAMAPTSLLRGLLPWEIPPKGVVIAVYDRHRCVIHLKKLMDCYGLTRT
EAETTLHFSQKPHNKLLASELSKAPETVRTHVKRAMHKMGAHSQSELVRL
VLSITMP
>HCH_06310 Transcriptional regulator
MTLTELRYIVTLAEEKHFGRAAERCFVSQPTLSVAVKKLEDELGVTLFER
SKSHITVTDTGKRVVDQALRVLDQVSVIKDIAQAGKDQLSQPLRVGAIYT
IGPYLFPHLMPELHRAAPQMPLYIEENYTAVLREKLRHSELDAIIVALPF
NEPEVVTLPLYDEPFVVLMPEDHELTQYDEIDSEMLPAHDLLLLGPGHCF
RDQVLDACPELFNRMGKEPARSDRSAHIITEGSSLETIRHMVASGLGITV
LPLSAVREDRYASGLLTTRPFKSPAPYRTVGLAWRVTFPRPKAIDMVALA
AGQCRVVEKRAS
>HCH_05144 Transcriptional regulator
MKEKLVKIDRIDRKILECLQKDGGLSNQELAEKVGLSPSPCLRRVRALEE
AGIILRRVTLLERKKLGLSLTVIIQISMDRHTPERFEEFENQVKESPEVQ
ECYLITGQEADYMLKVVVPDMDAYQVFLLNKITRIPGVSGVHSSFVLRRV
VDNTELPLGYL
>HCH_00849 Transcriptional regulator
MPKIVVEAEKKEQLIEATLKSVEAYGIPGTTINSISRYAGVSTGIISHYF
GGKQALMEATVRYLLEALKTSLLKELAKTSDGSPYSRLLSIVEANFSKLQ
VSERAAKTWMAFWAQAMHDPQLARLQRVNERRLFSNLKVSLREILPPSQV
EDQAHAIAALIDGLWLRSALSSGGLSVVQAERICKNYVSELFEGKHKA
>HCH_04843 Histone acetyltransferase HPA2/related acetyltransferase
MLKVSRQHTSTNQLCHVETDEYPEIIKVWESSVRATHDFLSEEDIQFFKP
LILNEYLKAVDLRCIKNADGEILGFVGVAEKNIEMLFVAAEARGTGVGGL
LLRHAIDELQAVKVDVNEQNPQAVGFYERHGFYIVGRSPVDGMGKPFPLL
HMELSSNR
>HCH_01138 predicted transcriptional regulator
MPGEKRSAIVFPKNQKVLSQLGENIKLARKRRNYTQTLISERTGLSRLTI
RRIEQGDAKVSMGHYVAVLGVLGLVEDLVKVASDDELGRKLQDIKLLSKQ
K
>HCH_00740 Transcriptional regulator
MGRPHDILSWLRQNRDTLRKSEQKVAECVLRNPNDVIHMRIVDLATEAGV
SEPTIVRFCRTICFDSFQSFKVSLAQQLASMQRQTPFRARSGDSLQQLGA
KIFSDVQSSLQQVFNQLAWDRIEQACAWISNSPRLYFFGYGASAAVAADA
QQKFFRLKPSTHACPDPDTQMLIAGLVETNDVIIAISHSGRTNNLIQSCM
QARASGAKVVAISPPQSALANIANLNIGVSVDENADAFTPLASRLAHLMI
LDTIASNLFQKLDEQHVQKLNQAKKNLSSLRLSPN
>HCH_00973 Transcriptional regulator
MKKQLDRIDHAILRELQSEGRLSNSELSRRVNLSPTPCLERVKRLERDGY
IRRYTAVLNAKKLGVGLVVFIEIGLNRTSRDVFADFKESVIKVPEVQECH
LVSGNFDYLIKARVANMDQYRALLGEKILVLPGVRESRSYVVMETVKEGQ
ELKLDGWREDL
>HCH_00987 Phage shock protein A (IM30), suppresses sigma54-dependent transcription
MSSIIEKLLTALRGGVREMGEAVMDADGVRAIEKEIDTAKGHIEDAKRSL
TDVMAHKLEADATTKSLRLDIAKREAEALAALKQNDEALALQAAEKIAKL
EADVNEQLAISRRYNEQIQRLKNNIQKAEKLIADNERDLAVVQTTDKVQK
ATLQIADSAAAHNANLGSARETLERIKRSQQMTDYQIEAGEELQAERNED
PLAKRLDAAGLTGDKHSARDILDRLKAQKS
>HCH_03525 Histone acetyltransferase HPA2/related acetyltransferase
MDVVVKNLKIRRMRDEDKPAVLALQVHEEQVPYVGRTREILQAVRPDHHC
HVLTLSNEIVGFFIIDVAYHQSFEFTLDHELGLRAFLIDAGRQGQGIGKS
AARALKPYLEAAYSDRPSIALTVNCRNPAAYHCYIGGGFIDTGAQYLGGK
AGPQYILRMPVGESL
>HCH_05553 predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon
MKTKTPIPQERKETVRQELLSVLQGGAFTVGSLSKLVGKSEKEIYDHLEH
LQKTGSLKIEPARCGKCDYVFEDRSRVKKPGKCPQCKGTFIDEPVFSAKS
R
>HCH_03544 Transcriptional regulator
MKKRRPTLQDIADQVGATKMTVSRCLRQPELVSEPLRHKIQTAVRELGYI
PNRAPDILSKSRSHAIGVLIPSLTNQVFSDVIRGIEQVTESRGYHLMFTH
YGYSPELEEQNLANLLAYNVDGVIMSESRHTERALQMIRTAGTPTVEIMD
TRSPALDQAIGFDNVQAAYDMTRTLIQRGYRRTAYLSVRLDTRTLQRQEG
YQQAMRDAGLAPRTMQYAARSSFSVGAHLMTRILDEMPETDAIFCTNDDV
AIGAYFECLRRGIKVPQEMAIAGFHGHDVGQVMTPQLASVLTPRHEMGAL
AAEALLARLEGQPDFESVIDLGYVISPGGTI
>HCH_05481 Transcriptional regulator
MREKTEAQEPENKRGRPLDPALQRQRKDDLLDAAFELLREKSYRSITIRD
IAEKAGMKSAMISYYFGSKEDLFIALIERLGEQQFGRIVEVVSQPDPIRG
FIRAAITRIVDCPPLITFIIDEVLSERGRLQDRFIDLMPRRMAMFLPKLM
ESEQKKGNLRADVDPKWAAFSLVNLIITPFIGGPVRRRAWDMSDELVSSD
EWIEHVYRMFMSGCGAAPKCSPQPNPQSNSQP
>HCH_01825 AraC-type DNA-binding domain-containing protein
MLQANVISLPQNVNRHKHTHYQLVLGLTGTAEIDMCGLAARLDVSHACIV
PTETFHDFYGRPRNHVLVIDLDQDYPAFLDSHHPDYDLLNPMFERPQLVT
LDRGLQQLTQVSIQEIQWAQDDRALRHHLACSIIRCLSRRISPSVKRQKS
PVLDMHRIDQFIYKHLHERICISDLAGSICVSERHFHELFKQATNQTPHQ
YVIRARLDYAKRLMLETNLSIAEISQKCGFSSQSALTNCMRKHDGLTPKQ
VQKRSQQSDRM
>HCH_04314 predicted transcriptional regulator
MSVTERIEQLLLERGVHRRQVKRKISNTCGVRYETVRQWFNGTIAEVGAN
YLLIIADKWDANFDWLYTGKGSMEKPKISEEAASYLPEEKRAWLELFDNT
SDVERAYMLNELKRFRKSIQNPYEGLEPASFSKKEEKVKS
>HCH_03215 Transcriptional regulator
MNPPSNTFKDLSLAEQLGRVSRLWKMTADRELAPLGLTYPRWTALLKLQR
LGDNLSQKQLAEALEIELASLMRTLKQLEEQSLIKRHSCAHDKRARIVSL
TDAGKSLIAQMEAHILKVRRRLLNHIDENDQKKLGAMLEQIALNALEFEN
P
>HCH_06057 Acetyltransferase
MKVKDVKLGQGLVVRPSTASDKAFLEQLHNSTREDLRLIDGERDFVESII
DMQFKAQQQGYGAQFPNAMYFVIEKQHERIGKVTIDFGHNEVHVIDIAFI
PQARGKGFGEEVIRSLQAAAAQICAPLTLSVLMQNVAAKKLYLKLGFVTE
SILPPYERMMWRPEIVQRVMV
>HCH_03726 predicted transcriptional regulator
MDTKEKISYSDKKFEDESRCPMTDFINIVSGKWAIPTLYRLIITDDIIRF
GALQRGIGGITQKELTKQLRTFESLGIVSRQEYPEMPPRVEYRITELGKT
LKPTLDSLAHWMTEHRDELLANSRNNAS
>HCH_04313 conserved hypothetical protein
MSVTKRIERLLLDRGVHPRKIKREISVACNVRYETVRQWFNGDIYQVGAD
YLITIADKWDGNFEWLRTGDGPMYRVRMEEDGPVYQLPPEKQAWLDLYDR
TTEFERTLLVSELDRIRHAFRKPSGPSVKRGHNGAAVRIQESPVAS
>HCH_07022 Transcriptional regulator
MKSDWIESFLVFSECMNFTHAAERLHISQPALHVKIKKLSEQLQTPLYRK
SGKELVLTEEGKKVQTFAREMRDRSSTFFEELRHGGSAQPVVLAAGEGAF
LYLLGMAIQGFKNESEHPLRLITADKAATISAVEDGSAHLGVAALSAIPE
GLELTLLTEVEQSLAVPTSHRLAKRRHLSLKDLNGEKLILPPPGMPQRMA
VEQALMSNGVNWTPSVEARGWELMLHFVKLGVGVSIVNGCCNIPSALTAI
TIQDLPKISYYIIERKGRWKTTGAQELKNCLLKHKGDWRERRGG
>HCH_04321 Transcriptional regulator
MPIRPRKLPPLNALKAFEASARLLSFSVAALELNVTQGAVSKQIKLLEEY
FEQPLFLRRARHIKLTEAGEKLFHSLGDIFDQLVKACDAASSHQKNILRL
QVTPSLAVRWLFPRLPQLQRELKDVQLKITTMWLSAEKEADLDLDHYDIV
LHCGRRRDNGSANLLREEQLAPVCHPSLLEQHGGDWRRLIRHLPLLHPSV
THEDWRNWLTKNPVPGVDPSSGLIFDTLDMPVTVAMQGHGVALADPLFIM
DELKNGILTTPRNHSHDSGWGYYFVHQKLRASDPSILTFKRWLIAGLQED
MERLETIRLLPSLTPLGK
>HCH_02979 Transcriptional regulator
MSGLGARTFSTLIYFEACGRLLSFSEAARELYVTTGAVSQQIRKLEEQLG
IKLFERRPSGIRLTAKGSELLTVTRQSIDAIRLTVDRLQTSTNDSAVRLT
STPSFVFKWLIPMLKEFNLSHPDIKIETYAEAALLNLSTASFDLAIDYSA
GEYQNFDATLLVEEILLPVISPEYMKGANWQDPNIWDSVSLLHDAMPWPD
SPRDAEWRYWLDQSGLPDAPSQQGHYFNRSDMAIAAADAGLGVALARGSL
VKEELANGRLIAPLPAMPSCCNYYLITHKGKAVSRNVSELKDWLLSKA
>HCH_05073 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
MSQQIIIADDHPLFRAALKQAVTQAVRFVDVVEVESIATLQDAVVANPDA
DLVLLDLNMPGAHGFSGLVFMRGQYPGLPVVIVSGSEELQVIRRAIDYGA
SGFIPKSAPLDEISQAIQAVLNGEVWLPADVAAKIDSVKAEHSDFSERLA
TLTPQQFRVLGMLTEGMLNKQIAYDLDVSEATVKAHITALFRKLGVRNRT
QAVIAVQQMEVEQQQQAAHSG
>HCH_02329 Histone acetyltransferase HPA2/related acetyltransferase
MTTLKYTRITTWLENESELRAIRQQVFVEEQGVPPELEWDNKDENAVHFL
VKDVEDRNLAVARLVRLSPEKAKFGRLAVLPEFRRQGIARSLLKFVIGYA
RSEGFNHLTLSANIDATSLYANEGFQALGSPHEEAGSLHQRMELTLGTAK
VEAATALGQDERVYRIHAEPDYLEHLKSLTSQAKQSALILTWDLEKNVLD
NPDVLDALSRLARSGRATQIKILLGAPKTPVAQSNQLLALARRLTSNIEI
KMLNPELSFPEQVYVLIDDDGVLLRHHYEKWEGFCCYQDPGTVKRLKDEF
MRLLQHSQVSQELRQFSL
>HCH_01145 Transcriptional regulator
MIRSLHALRVFLSVAKHLNFAQASAELHLSASSVSRQITELEKELNVALF
TRSTRMVALTQQGQRLYEEAAPLVISLDEVSDCLRQQKEEVGGRVSLSAP
WWFASYFIAPALAGLRDHYPDLTVILDCDDRVIDPNEGLHDIYVRFGRLN
DSRLLAKKFGAYEFWLIASPQYIEKYGDPKHPKDLHDHRLLAYRFSSPHS
SWIFDDGASQQRIAMQSPYLLTNNTESILHCALNHGGIGLLADHGVLNSV
KRGELIRLMPNYAITPNRFENGMYLVYSKDKAKIKRVKTVIDYLAEHLRS
>HCH_03077 Transcriptional regulator
MLKSLNFKHLYYFWVIAREGSLVAASKELNLAPQTLSGQLSSLEESLGGL
LFNRKGRRMTLTQLGRLVLSYADDMFRVAGELQQVALLVTSGRSISLAVG
ISASIHKLFAYRMLEPALHLDREVKLSCRSGTVEHLVQELLSYRLDIVLA
DRLPPLQRDSQTHWRELESSSISLFAKPDLARVLRKNFPLSLDGQPFLAT
TLESPYFQQLMRWLGEHGVKPVIKAEIDDSALLKVFGARGLGVFAAPTVI
RDEVLRQYQVELVGSIEAVTERLYAVTRSVRSGNPAIEAICMRHTAF
>HCH_01331 hypothetical protein
MKKYYDPGNGTLSKEVIEKALSRLAQLLKERNRRVELVAAGGVISVLMFG
SRRMTRDIDVIIPPKDKELISELVDQVAEEQKLPKGQHAWLNDGVSFFGL
QTKSNKQIFMHPNLVVYTASWYELLGMKLSGAWRRDADYHDAVHILRQIG
NNNKSQTLVMSMKYRNFSPYVDDETFTKRFNRTWTDAFDDFD
>HCH_04345 Histone acetyltransferase HPA2/related acetyltransferase
MSGEAEQMKFLCLKHTQADIARELYELFQSAYRVEAKLIGVEQFPPLRRT
AADIMRSSTQFLGYRQVSRLVAAVEIERQGEWLSIHSLVVVPDMFRQGFA
NGLLEYVFTQSHQFGRAKGVKVSTAAVNAPAISLYERFGFRKVGENRTPE
GISVVSFEALF
>HCH_04561 Histone acetyltransferase HPA2/related acetyltransferase
MSCTIRKAKKEDFPVLRMLWQFYEYHNSYYTHEDIDHNGLFDIDDDYILA
TLEEKEECEVYLIISDQSVAGFLTIEPVEIRGKELLELADLFILPKYRSR
GIASYAIKNMIFKEDKAWHISIYQGDTLALAFWKRIFHKLPFRSVGEISP
PEVAGFYEFVVEAIAL
>HCH_01637 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MHILVVEDSELLGESIQARLQKMGHGVDWVNNGRQANGLLQHQQFDLIIL
DLNLPELGGEQILSELRKRKDTTPVLILTAREQVDDRIKLLDAGADDYLT
KPFDFGELEARCRVLMRRNQGFSSNLSRHGNLSFDRSAKAVYVNDEKLDL
KNREFRLLEVFLGNLGRVMSKEELADRLFAFDESPGPNAIELYIARLRKK
LADSSVQIRTLRGLGYLAECDDD
>HCH_03495 predicted transcriptional regulator
MIPSVYFYTALIMNYDEPFGCSVTTTLNVIGGRWKPVILFHLLENGVVRF
NQLKRMTDGITQRMLTNQLKELVSDGIVERKVIEVVPPHVEYLLTDYGKT
LTPILIEMREWGAKHAEKQSL
>HCH_05827 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MDKIIISHVGLMEKDLVLLRNLSHLDETWFGNFQLASEPGTMEGQILLVD
VDKPESRSLWQRMKAATHFEKTIVISRSKQPVDDGAIHLTRPLIFRRLRE
ALQQATQSDQQEAKTHVKNILVVDDNLPVRTFMKQKLHEILDFEAGVDVA
ESGEEALLKVRDCRYDLVFMDVMMPGMDGYQACRSIKQQVKTKVVMLTSK
SSTLNRVKAKMSGCDGYITKPPEDRELAEVVRRYLGATKTETLIFPQLAA
LGR
>HCH_00907 Transcriptional regulator
MNLSHHIIAHLPFLAAVYRARSFTRAAEEMHVSQAAVSYQIRQLEQKIGV
CLVVRQSGSRIHLTHAGQNLVDEYLISEQRLQATLDSLAGESLSGRLKIT
APIDFGSLVMPAAIAELEHLAPALQIELHVSDDLIDLIAQQFDVAIRSPA
TGAALTHHLLTTSKKQVVAGKEYLQRRGLPETLADLKHHRLLTRANGKAA
SWGQLFRQNDLSLDAMPERMRLGNTFALAEGVRNNLGVAILPSFAVGKDI
AEGKVIELFPSFSAPLLTEFYLSYPPSAPIRKRLAALAQAIRTVMVSERF
SDGFIEADGLLSD
>HCH_03471 Serine/threonine protein kinase
MDKFWKQITTSDHTWEQEALDFVKAALPDHEPYRAWANFEFITKEGFVNE
VDLLVHTPKGLFLVEIKSHPGVMKGDAGIWIWEAPEGKRKAFDNPLLLTD
RKAKKLASLLQAQDAARKSSKERIPFITPVIFLSAPNIVNKLEGNGRKQV
YTRKNFIEEITRIDDSWKHKKLDKVSAKTVSQAMLQAGIKESLRTRRVGQ
FDLAELLDETDLYQEWLGRHVDTQVRRRVRIYLTQGKAADEAARLDKAAH
LEAQLLEGVDYPGILKTLEFQRHDHGPALIYENFDGSQRLDHWLLKQDEG
KRLDQSVAVSLLRSIAETVKYAHSQKLYHRALSPQSIFIKEENGEFKIKI
ANWATAQRIFETESKHISAFSKLTRMVQEESGSYMALESHTLEEADGTQL
DVFSLGAIAYHLFTGKKPAANELELQDKLGKDGLQVTDVINGASSWVSYL
VQYATHPDPGARLDSVQDFLDYLTEVENDITRPEGEVTQKPTEAKKGDTF
EGGYTVIKRLGRGACSVAFLVEYQGQQRVLKMALDPEHNRRLHQEGETLG
QLRHQAIIAHHKTLDILGHTCLLIDYATGGTLAQRIRRTGAIQLELLERF
GDDLLSAMVHLEDKALMHRDIKPDNIGVTELGSQLHLVLFDFSLSNAGTD
NIKVGTMAYMDPYIRDAGRRRWDDYAERFAAALTLYEMAAGTLPGWAANQ
GLPIDLEHELQLDASVFDPSIRSSMAKFFQRALARDLGSRFATAADMLRA
WRQVFLQASKESRHPTVHGEVPTCPVEEAQQDTQIGLLELSPQALDALSR
RNLNTVADLLKQNRSKVRAWPGVGIKTRNEVSELIRKLQEKWPNEVAQPV
SQHDGAQQASVDRLFGLIYPKTPDISRRSFLNEFLGRLDSEAPKGHHNVH
WPSITMLCSEINMEAAEARQILSKLTTQWGKLSEVNLLRNEIVEILTENG
GVMTAIELADAVLLRRGSVEDNPIRSRHAQAVVRAAVETEISKQQPRWIL
RRFGNRYVIADNQQEQGEDLATYAQDLGQLASECALKQPLLSPQATLDKV
RAVPAPETFTGLSTHRLLRLAAAASEQAALSSRAEFYPRDMEAAQALELA
QGALLGSKALTVAEVQVRVKGRYPAAKPLPGRPHLDDLVLKLDMGFLWDP
NYETFDKDGKKQLGAYCLPITSFTEYQATQTKTSLTQQTDWDGEAWQDEK
SIRQSISNSLRDGRFLALGVRPRDMEKAKIKLCSTYGLVSFSFDELLLRR
LHQHCAAMKNPPNWQVVLKADAADQTSRDWVNLQRLVHQVLPSIADEIKQ
SDKPVLLTEPGLIARYDLIHTWLNELRQHLANTGHVHALVLLIVGDAQQH
APVIDGKVIPLEAGNSIYARLSGSWVKPDQPQFSN
>HCH_04627 AraC-type DNA-binding domain-containing protein
MNANQHLGFASVPAVNQYLRFAADSGLDCGRALAAAGVDPVILQGGQNQR
INGDQFQSLLRDLAQQAQDPLLGLKSGNYVQPGSYSVLGYIVMSCSTLRE
AVERIIPFEKLVGDMGVTSLTQEGARTLIRWDCAYPDPDVRPHMIANVLA
SWVNFARWLANADSAAPLQVLFEHPSPGPEFEPVYQRAFQCEVIFDSPVS
GLVVNDALLDTPLRQPDLLLRQTLESHASAQIKTLDEEDLSLLTRVKNTI
RHQLRHGVSRQDMVAERLGVTARTLQRRLSEYHSSYQLLLDEVRLEMAQD
MLTHSDVPIPDIARQLGFAEVRSFHRSFKNHTGVTPGEFRDNAGAPT
>HCH_03805 Superfamily II DNA/RNA helicase, SNF2 family
MSEHTFSPGSVVTARGREWIVLPQSDARLLHLRPLGGGDDAITALLPELE
PIHSASFPPPQVMHSGTQAAGLLLRDALMLKLRAGAGPFRSFGNIAIEPR
AYQLVPLMMALKLETIRLLIADDVGVGKTIEASLIVREMLDRAEINRFTV
LCPPHLCEQWHEELKERFHLDATIVRSTTAARLERGLLQDRSIFTEHPFT
IVSLDYIKNKTRRDAFLLHCPEFVIVDEAHTCARSGMGPHLRYGLLKDLA
ANEARHMVLLTATPHSGDEEAFYNLLSLLKPEFVDLRTIDNAAHPLRQAL
ANHFVQRRRQDIGEWKEGNLFPDRLTSEATYKLTGEWNAIFHDVLEYARE
LVSRESEGTFKARMNWWAALALLRCISSSPQAAIRALNTRLDNTLSPDGK
SPDEEDQRCHIEALNEKGALSVLDGTDDNLTLDDVEPGAAQEEDVAILKR
LIERAKHLKSGNDPKLQTLKQIIKPVLDEGYNPVIFCRYIATAEYLADEL
NSAFPQREVIHVTGDLTPTERLERIEQLKESDKAPLLVATDCLSEGVNLQ
EQFNAVIHYDLSWNPTRHEQREGRVDRFGQKAKNVKALMYYGEENPVDGA
VLQVILRKAESIRKALGVTVPMPEEGDRAEQALMKAVLLRSGNYIGSKGM
DDLFAQDADLQALDAKWESAREKARRHRTLFAQNRLKPEDVLPEWEKAFA
VLGTEEDVKRFVLNACERLGAPLKSLKQGGYQAPLPHFGEKHPGLRDRLD
AAGLLALKHIDFYYPSALKAEFIHRTHPLVSHLADYLAELAMSGEDTKLI
ARAGALYTKEVETRTVIYLLRIRSRLILKRTLHECDLLAEEALAIAINAD
NQASVIPKDQALKLMQASVSKDMCKEAKERELAEELNQLEEKQPMFRSLA
EARAKQLLADHRRTREAAQAKGSYEVKPQFPVDVLGVYVLIPDLKLF
>HCH_02657 Transcriptional regulator
MKLQQLRYIWEVAHHDLNVSATAQSLYTSQPGISKQIRLLEDELGVEIFS
RSGKHLTRVTPAGETIIKVAGEILRKVDGIKQIAQEFSNQRKGDLSIATT
HTQARYALPSIIRSFIQEYPEVSLHMHQGTPMQIAEMAADGTVDFAIATE
ALEHFSDLIMIPCYRWNRCVVVPKNHPLAEKKKLEIEDVAAFPIVTYVFG
FTGRSKLDEAFSEKGLTPKVVFTAADADVIKTYVRLGLGVGIIARMAYDP
VADSDLVALDASKLFRPSTTKIGFRRGTFIRGYMYEFIQRFAPHLTRELV
DQASQKASKAEIEELFENISLPTY
>HCH_06505 Histone acetyltransferase HPA2/related acetyltransferase
MNANTDVYFRESDDQSFAERVIRESMAEYFNKYEVEWTPERVSKYWGDHE
NYDIFYREEKVGVLRLAFDEEACIVRDMHVLPAYRNLGVGSQAIQRAFTA
AWVRELPSVRLKTFVCNPSKNLYRRHGFALVDRKDNLILMEKKVD
>HCH_04192 Transcriptional regulator
MDKLKALRFFEHVGKAASFSDTARHFDIPVSSVTRQIQALEEELGARLLH
RTTRVVKLTEIGEIYLQHCSQILRSLDNADELIVNYRSRPSGVLRISCSS
SYGESRILPILSEFEALYPEIIIDIDLTDKVVDIMRDSVDIAVRAGQIPD
ERVVAKHIDDNNFSLAASDAYLQRYGTPLRIEDLSEHRAIFFRTSDQVLH
WQANINGRWRQVDIRPALITSSPRLLRQWAGEGKGLAMMPNWVWRSNSLP
AGFRILELDYPLYVSRATQLGIYLLYQRPKYAVPKVKAAVDFLVSRLARD
>HCH_03523 Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
MKRYEQLANEIADLIRSGVLPAGSRVPSVRNASKTYGVSASTVFEAYYLL
ENRGLIRSRPRSGYFVCNQLKQPAPAAQKRRQQTLASTSVDVSELVFSVL
GSVRDPAITPLGSAFPSPTLFPMQRLARSMAKATRLMDLRSVVADLPPGN
RDLRRQIALRYVMEGVSAPMEELVVTSGAMEALNLCLQAVTQPGDLVAIE
SPAFYASLQVLERLQLKAVEIPVDAGAGMDLDVLEQALGNHPIKACWLMS
NFQNPVGVTLAEEKKRRLVALLRRHQVPLIEDDVYSELYFSAHAPKPAKA
FDEEGLVMHCGSFSKSLAPGYRIGWTAAGRFAQQVERLRLMTTISASIPA
QAAIADYLQHGGYDRHLRKLRHNLEVQQNQMLAAIDRYFPSQTRVTRPDG
GYFLWLQLPPAVDSLALFKLALEQGVSIAPGPIFSATRQFRNYIRLNYGH
PWGAEFEQAMDVLGRLARSF
>HCH_01304 Transcriptional regulator
MSRFEEMQIYAKVVETGSITRAAQVLDIAKSAVSRRLADLEARLGVQLLV
RTTRKLTLTETGRSYYERCLRLLEDLAELEESVTSEHKSLSGKLKIAAPF
TFGMMHLGCVFNDFMQMHPNLNFDINFNDRQVDIVQEGYDLAIRIGRLVD
STLIARPICKIHTVICASPAYLEKFGEPKTPEELTQHRVIHYSNLPNSIW
RFWNSKSECIEVNVNPWLQANAGDYLRQAAVNGYGIVTQPNFILYKEIAS
GALKPILTDYQLVEANAYLIYPHTRHLSHRVRTFVDYVLERFKGTPYWDR
PLNEFCESAGCPSPSDFKPRPEDAAPAMK
>HCH_04419 Transcriptional regulator
MSALTYPASTLATSTSVIELSALEKAILSNYQKGFPLTPRPFFTLASQLG
CTEDEVLSCLQRLQQNGVISRIGPVFNHRRAGASTLAALRAPSEQLQDIA
ELISAYDEVNHNYLREHDLNLWFVVTAPDADHLDAVIRNMETATGLKVWR
FPMVRPYHIDLGFRPDFD
>HCH_06288 AraC-type DNA-binding domain-containing protein
MNTDTSIKRTVISREGVGTTASILTRNDLFIGKFVTDYPTFILVKRGKKT
LYSGERRVALLPGDAVAIAAGAACDVQNETDEGLFEADWIVCARNIICGI
EPRFPKHKKVQSIVSLQGLGKEFALTFERGLQAIKEPQATPDLVAEHRVC
ELLQWLANAGYVFRSNERADIQRKVRLLIGAEPDKKWSSQDIAESLALSE
ATLRRKLAKEGNAFSEILVDVRMSLALSLLQSTDAAIASIAYQVGYESAS
RFSVRFKQRFGFSPTAIRNGKATGQGSL
>HCH_00877 AraC-type DNA-binding domain-containing protein
MIEQAKYWQDKALGGVEILKATFVKQHFPRHVHEGYCVAVIEKGAQHFLR
DGAEHTAPVGSIVLVNSDQVHTGRTATEEGWSYRAIYPTPAELAPVIADI
FGPGVEPWFPEPVVRDLQLARGLQVLHRLLEQGDEPLHCETLYYQMMGQL
MQRHARMRPRQLMEQCGSHWAVAKVKEYLQAHYADAVSLKDLTECTGLSP
SYLTRLFTRMTGMPPHAYLNQVRVSRAQQLLRMGLSLTDVAVATGFSDQS
HLSRHFQRIMGVSPGRFAKVC
>HCH_01373 sigma 54-dependent transcriptional activator containing GAF domain
MTDAPLSVLVEIAVDLANSLTNEDRFDRLLSAVRRAIPCDAVALLALRED
MLVPLAAQGLSPDILGRRFKADEHPRFERLTQSRQPVRFAADCQLPDPYD
GLLLATEGDLPVHACMGFPLYSDNRLIGLLTLDSLSAGVFDDISQKTLSI
LNALAAATLRSAELLNMLEYKASHAHEVALALTQEALSRDGGELIGESAA
MAQLKREIRLVASSDFNVLVTGETGVGKELVARTLHMLSSRCNEPLVYVN
CAAVPDALAESELFGHVRGAFTGANSDRMGKFMLADGGSLFLDEIGELSL
AVQSKLLRALQSGEVQKVGRDKPEKVNVRVIAATNRDLAREVKAETFRAD
LYHRLSVYPIQVPPLRERDQDVLLLAGYFIAATRRKLGMEQIRLAPAVNE
ALLAYPWPGNVRELEHTISRAALRARSEQAGKRIVTILPEHCDLSVPPSS
STILQPDRTVSAELASSHKPVNLKEETERFQRELIHRTLTEAQGNWAAAA
RALSLDRANLIRLAKRLGVHVERRHAVVRKQ
>HCH_01207 Transcriptional regulator
MPRPSKKLERTEEIMQAFRRCVARYGLEGSTLERIAEESGLQRSLVRHYV
GNREDLTLQLIEQMAAQYEREWREMLSELPATEVAPAFLRMLFEYEDDDR
ERMQLESALIFAASRDAAISDAMRSWTERFYSDIAEVLRRDYPDADDDAL
QSVAFGVASLYFNIDSMQPLQMADRYRASALDAARRLVATLE
>HCH_06862 Serine/threonine protein kinase
MAWQGYKVLSKLGEGGMATVYKAMQESLQRPVAIKILSANLKDHPEILER
FEKESLIIAQLNHPHIIHVIDKGVTGKGRPYFVMEYVEGMTLEDAINRGK
LDFSRKMDVLVQLCKALAYAHKNGVIHRDIKPSNILIDNDWQARVLDFGI
AHFYDSSSKPKTLHTQTSNIMGTSAYMAPEQHKSADAASVQSDIYALGIL
MYELFTGVCPQGEIPPPRKFEPDMAPALNSLVMRCLEKDPAERPASADEV
KNGLLHILQGGHLSKAQKERALSNSEAIESKFSLLDVLKEDRHSSVYLYE
DQGKQKLLIMKKLPGDTPGIKEHKLLARLNHPNICKILAVSKVDKGYVIV
TEYLPGGSMAEQMLAPLPAVKVVEWAEQIAEGLAFAHRNRIVHGNLRPSN
LLLDEDGSIKLTDFGLRAHYTDSDEPNWYENADAQGILGDMFALGAICYH
ALTGQPPVVRGQRLVRSKRFTELPNRLQELINRLLETRPDKRYPSLEVAM
ADIRGVLKNLRAQTAAKQTEAIKKHVSQVAKKERRYRPPIRWGRVVFFML
VIGVAAEEYFWGYGYRYLKPYLDPYLQQVQESDAWIEWSEKAKEVGRKTN
QIDW
>HCH_05621 Transcriptional regulator
MLEFHFHCQKSAFEGGDMRYKAGQKEETRKRIMQAAGRSFRKNGFSGIGV
DGLAKEAGVTSGAFYGHFKSKKEAFEAAVTSGLRELGEGVTHFREQYGDE
WWSEFAKFYMQEKRTCDLAESCALQSLTSEVGRSEADIRTLFQTELLKVV
LSAQGNENSIKQGTERENLDKVWARLAMLIGGVTLARAVADEELASSIAA
AIERTIETHNGRGR
>HCH_01739 Transcriptional regulator
MKHPTRRSRAIDEQEKAARRHSILEAARALYLLQPTQLPSVINIAQQAGL
AKGTVYLYFKTKEEIFLDLLGGLYQQLLQELAEVAEDKEKSNEDLIGGLI
NQTTRFVQEHPHFMPLASMTSSILERNVEAERVADFKAELMGRIQILAVG
LRRHLPQLTETQCLNLLLHTNALLLGLWQMQSVPTQVKEVLMQRNLDALV
PAFEPALRESMNLLWRGVLQPA
>HCH_04021 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
MSEKATIMMVDDHPLFRKGIRQLIELEEELDIVAEAKNGEEGLSKAKELE
PDLILLDLNMQGMDGLDTLRAIRAAGVDSRIIMLTVSDNEADVVNCFRAG
ADGYLLKDMEPEDILEKIKQVTLGKMAISERLTEILASALRKPVEAADPS
ASLTSREYEILTRIAQGHSNKVIARDLNISDGTVKVHVKHILKKMGMRSR
VEAAVWLVNRKG
>HCH_04572 predicted transcriptional regulator
MLEPSHNDELPPIPGKRYFTIGEVSDLCSVKAHVLRYWEQEFPQLAPVKR
RGNRRYYQRQDVLMIRQIRDLLYNQGYTIGGAKQKLAGSETKEDATQAKQ
LIRQMIIELEEVLLVLEA
>HCH_05765 Transcriptional regulator
MQNLLAHLEWVAAFHQVAQDGSFTQAADSLNSSKSQVSKQVKALEALLQT
QLLHRTTRSLRLTEAGEALFRYSTEIQALFRQATEVVSDLNEDTVGVLRF
TCPVSLGISMMPEILKLFRLRYPRVKVQIDLANESRNLIAEEFDLAIRAT
PQPDPYLVARPLGAMVDAICASPEFITRHGKPETPEELTRFPCIVHNQHQ
QLSQWRFTGPEREISVPIQAEIAANQYPMMRQCAVEGLGVTKLPFYEAYR
DIQSGRLVRLLEDYPSHTHTLFVVFPAQRYQPKKLIYFKELLIEWFSGRP
EFFQRL
>HCH_05308 predicted transcriptional regulator, BolA superfamily
MQPEALQEILQEKLSDCEVRVEGDGYHYQVVAVGERFAGLSPVKKQQTVY
SCIHDLIADGTVHAVSIKTYTPDEWAAANK
>HCH_06628 probable two component response regulator protein containing GerE domain
MLTMVTKGNDLPTVYRGAPAEDDLLPSLARLSGVPISIREAQTIGLWLCG
LSAKESSQVLGLSPRTVETYRENIKNKFSITNKIKFFDLLIRNKLHIPLV
LMGGSYITEYQSNHQDQPLQATG
>HCH_06585 Phage shock protein A (IM30), suppresses sigma54-dependent transcription
MNHEVLYMYYMQKMLTAVRGATRESAERVVDANAIRIFEQEIYDCECAMG
QAKHDLARVMAEKMRLERGIARRARYLEEKESQAGMALEKGLQELAHDLA
TVIADQEKTLADERKAAEKLNEHERKLRLSLQSAAQSIQNYRRELRMVQA
TQSTQQATASLTVRANSMGSRISDMQDSLQRIRERQERFDDMKRAMEQLD
EGLNDDGLEDKLRKAGIGARTEADAVLDRIRKKSA
>HCH_05548 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
MMASKILIAEDHDLYRDGLRHLVMEIFPDAKIVEASDFYTASEQLILHPD
LSLLILDIQLPGTQRLDGVKQLRSAYPLLPIVVVSALEMGPNVQNVMALG
VNGFIAKSAKKHEMQEGLLAILRGELVTVTQCHDQLPSFSPRHLETLEYL
TQGLSNKEIAKNLGISDITVRQYVSDIIDHLGVENRTQAVMAAKKRGIII
D
>HCH_03175 AraC-type DNA-binding domain-containing protein
MDQSLYYHWNNLCLYMGRFDGTYHWRHIADSFIVSLDNEFDVKLASGEII
STRCLMIPANARCDFIISNQRIAFVSSHFWRNIKTTLIYNYYCCEQDGLL
FDFLDACDIARAFRDLYKRRPSADDAREILDQILNPKQYPLAPPLMDRRV
RKLIELLLKNPDLSQSIDDYAELMPISAAHLSRLFKQETHISFSRFRLGV
RVLYFIKQFSRSRNLTTAAHDSGFADLAHLNKCHKLLFGICPSQLWLSES
ELKICVA
>HCH_03942 predicted transcriptional regulator
MTKNYSISDLAKEFDVTTRTIRFYEAEGLLSPERQGQTRIYSEKDRVYLK
LILRGKRLGFSLAESKQIICMYDPDSGNRVQLQLMLNKIAEKRDILKQQL
SDIRLMQEELDEAEERCRQALADFGKG
>HCH_03565 AraC-type DNA-binding domain-containing protein
MEAGKQVSWTAYTLGYRHPENFSAAFRKYFGYSPKER
>HCH_05031 predicted transcriptional regulator
MIRCHLARLMGERKMKISDVLRETGLSRNTVTLMYKETAQKIDIEALDKL
CQLFECNIADMLEFTNE
>HCH_00884 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
MTSKSMQQVTILGFDYAVSSAITGVVDLLAMAGVTWNHIQRSQPHPKFNI
RVATRDSQPVRCHNRLLIQADACFDAIEPSDILVIPSIAGDIEKTLAQNP
QLIDVLKNMNSQGTVIAGNCTGAFFMAEAGILDNRTATTHWAFVDMFRQR
YPKVDLRPEQMLTASENVFCSGGGIAWLDLCLYLIEHFCGHEVAVQTAKT
FVIDMGRTYQSSYSSMRARKYHRDEDVLRVQNWLETHCGQDVRIDDLAVR
FNMSPRTLARRFKAATGDTPLGYLQTLRLEQAKKLLEETSDNVSQITLAV
GYEDVSSFTKLFRQKTGLTPKEYRNKFQRRSIT
>HCH_04041 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
MIRVLIVDDHELVRAGLSRMLKDEDGIEVVAEARSGEEAVSIVRQHPIDI
ILMDIRMPGIGGLEAMRRIHRIDESVKVVAVTACEDDPFPSRVMKAGASA
YITKGADITEMVKAIRVVHAGQRYISPDIAQKMALRPFDAEEGDVFESLS
EREMQIAMMIVNCHKVQEISDKLCLSPKTVNSYRYRIFEKLNINSDVELT
LLAIRHGMLDANQVGSLKT
>HCH_04213 AraC-type DNA-binding domain-containing protein
MSPFRANAGSPVLPQDILVRRLRSEGTEEREGHSHEHGQLFCVLQGLTVV
DTDAGRWLMPSNRLGWIPPGVRHGAQYFGAIAGWSLYLHPDICEPLPDEP
CVYEANALMTPVIARIAEWTAGEPLDAPRRRLLHVLMDEIQAAQQPALHL
PMPRDQRLLRLSHKLLATPENNDSLLALASDIGLSERTLTRKFREETGLS
LGQWRQLARLARALELLAQGVSVTQTALDLGYDSVSAFIALFRRYFGETP
GRYLK
>HCH_02654 Rad3-related DNA helicase
MVSEGIKEQIQSAYRKYIAARNIKPRSGQRHMIAEIARYLSSIELDGEFR
RSNDATTCVVEAGTGTGKTLAYLMASIPFAAALRKKIVISTATVTLQQQV
VQRELPLLAEHTDLEFKVALAKGRGRYICLHKLDSYLAGQEQGILLLDGP
QESSGPDVDAEAYQRFMNWMVDKGWSGDWDSAPEPIEESLWSTVTTDHRQ
CLNKRCSFFTQCAYYKAKMESEKAEIIVANHDLVFADLALGGGFVLPPPE
ETIYIFDEAHHMADKALNHFAFSAGLKSSQKMLRGLSRALVEGQSVFAYD
EQITNRVSPMAALSQEVHHHLDAVARFLNETIEWEENDERATFQYRYPMG
VIPEELRKLSAAMADKVGEMTKELEAVLKRLRELAEKEQPGGAQRQAYDQ
AVMALSVYQSQVENLEDVWRIMGEEVQEGHTPTARWLTTWAKETDSDVVV
HVSPTNAAHLLRKRLWSRAFGCVLTSATLSVAGRFDRLAGQVGLPDGSTF
AIHHSPFDFNNNCTLELCDLGRDPQDSESYLEMLSQALLRIIDEKQATLV
LFSARKHMQFAARALADTKLGSLIITQDSGNKGQLIDTHRSRVDENKGSV
LFGLASFAEGLDLPGDYLKHVIIAKLPFAVPDDPVEATYAEWLKSKGGNP
FNQVVLPDAITRLLQACGRLLRSERDSGKISIMDRRLWTRSYGRIILNAL
PPYKVVSADIRQPTASES
>HCH_01619 FOG: EAL domain
MEITPMDDDVISFAQDEPEPSEHVAQEAWKVLTVDDDFNYQRSTEFALAG
LKILDRPLQLLRAYSYAEASKLLSEHADIAIALVDVVMETDDAGLRLVRA
IREVLGNAEIRLVLLTGQPGMAPMLDVMKEYDINDYWTKSELTDTRLQTV
LTGCARSYVQIREIARAKRGLQLIAESSDSVYSAKNLQEFSARMLAELAK
LLGLPPDGLVCAKAYTTSRPENRECYIIGAAGIYSNCVGKTLIEFEAPNV
REHLHQCLQGRKSIHEKDYTCLFFLDPIGAADYAAYIETGHPLDATEQEL
IRVFSLNIANGLQNVSLFNRLERLAYEDDTLRIPNRNALLRRLSQILSRP
DRNQYQLMLVDIDGFASINSVLGARYGDSVLQLVSSRLKDAFSGTIQVSR
VKDDLFAVLGSVEDVSADKLDGLFNGLSASEKSLKLLNISSVTYPLSHPD
SSPPEVITRAGIALKQAKKRGIRQHTTYDPETEAAAASRFHLLQALQDAL
TKQSIFAVLQPQVDLETKQVTGVEVLARWRLEDGTHIRPDQFISLAETSG
LILPLGQQIFTQSCAACRRLQEAGYRDIRIGVNYSVIQFEQDDMVDTLIR
SAEAVGIRPQQIEVEITESTVMHNFALVQEKLERLREIGVTVAIDDFGTG
FSSLAYLSRLAVDRLKIDKSFVDKVTTDKGAAAIAKTVIQLGESFNLDII
AEGVETKEQAQWLLDNGCSSVQGYLYARPMTVDVLLPWLAQRR
>HCH_05456 Response regulator containing a CheY-like receiver domain and a GGDEF domain
MHEQILAIDDDERNLRLIRAYLADTGYDLITAADGEEGWGTLERHLFKVD
LILLDRMMPKMDGIAFLQRLKEHPSAKDIPVIMQTAAAESGQIREGIDAG
AYYYLTKPYEEEVLISIIKAALEFGKESHKLMMELGKNKSLRHMARQLTL
SFATVEEAEQASILLADLFPFPPKVVTGLAELLVNAVEHGNLGITYDEKT
DLNLQGEWMNEVQRRQKLPENQNKRVQVEFARTDDAITIAITDQGPGFNW
REYLQISVERATDNHGRGIAMANLLSFDEMTYEGDGNRVVCKVLL
>HCH_01309 AraC-type DNA-binding domain-containing protein
MVNAAQSSAPRIDADELIRLANDAGYRQQIEYSESHHKDAIMEGRFALTS
YPSGLSVHLSDLKELQTLSTSMELPPKLTLSVILRGKLDFDLGDSNFEAG
GAGPECFALSIPRHQTFHRRLRANRCLTKVNISVSREWLECRSQEEGAAP
FVMEELFSEDVIFAKWPASTRLIALAEQILNPPPLNHLLLSLYIESRAME
LLSDGMLMLPQHINKPRTDAFETLKPQDNRRIATAREFIEAHLDTIDSLE
ETAAAVGMSVSTLQRRFKNAYGRTVFEYVRQRKLESARDALLKKELSIGE
AAYKAGYRHPSNFVTAFKRAFGATPGEL
>HCH_03871 AraC-type DNA-binding domain-containing protein
MNAISKELEQGFFTQSVIGDQPYPSYELRNILACLEEWGDAEFVESVLKQ
VGLDWERLWEEPSMPTHRLLQTLDLVRERYATPGLGGAIGQSYTLASLGE
IGVQVAACRTLGEALVLVERNYDQLGVVMDKSLTLQGDQVVVRHYNVSGL
NHETLDFLMEICIAAFFTVAREVAGFDFPLRYVSFTREPPTDQKIYRLVF
GDPLRFSQPFIEWAFDVRLLEAPVRVRLPDSAPMQEQPTYLQFTAWDETS
LVQRISDMLYARRGFPELPEIAGRLNMSPRTLRRRLATAGINYQRLLNRI
RCQQAIALLQEEELAVDDIADQLGFTEAANFRHAFKKWLGLPPGAVRSV
>HCH_06417 Regulator of sigma D
MLENCQNAKERWGGVSEIIDRWLKERQDLIVRYCDLVGKSKFDDVESAVK
NFKTFCQVLLDYVSAGHFEVYEQLIEEAREFNDGGMELVKELYPKIQSTT
EAALDYNDRFDKTPEELSELNALLPELSRLGERLEERFELEDMLIEKLHN
AHADQVA
>HCH_03863 Transcriptional regulator
MNYLPTDLLQTFVAVADYGGFTQAGDALGRSQPAISLQIRRLEELVGATL
LLRNNKALAPTPEGLILLQYARDILALNKEAMIKLSQPELAGCLRLGIPN
EFASSLPEVLGKFSQAHPNVTLEVTCDLSSNLVERYRSKELDLVFALHTS
LRTISPEEGWMEDLVWATSIHHTCHTRHPVPLIVAPRGCVYRHRIIEALD
SMSIPWRIVYTCASFSGIRAGVLAGLGVTVLGKSIVPEGLRVVESSDYLP
ALPGVQMRLLYNREQTSPAVAGFVQFISRTAPVAGDGLSLDGLRAG
>HCH_01087 hypothetical protein
MNNNKYNLGPVHWSRSALIVAAVAATLQGCEKLETKPKDPTVPSPDFVLS
GLQYASEISLQRDQGRVMRSIISGNSRAGLGDLLDKSGNGGYAKINTPKY
KFDDAGFMNASGSRYGGISAAGDLFFLTDVAAISTTFYAGVKVDETATAE
NPDGDIVYQKPDLTQNDYLCIEQTYFPSGADNKLTVQIHKATLNADGNGV
LQRIGGTGVGAGSESRAITYSFDDEAILNWSDPPLDEAFDEVVQNAGYTL
DCPVDNNGDPVYDPCRWSVRTLGGASPDGRVFHFSRVAWKEQVPVNPPED
DSPGNAEVGGWRPVASSAICLRTATNMANNVLQGEYWLGVVIEDQDIPQA
TFSRLTLDGAGAGVDSQIRASSGIATRDLSVSYNVESNGELSYSGRMGIV
SGDGELLVFDASDPANGKIGFGVAMKNQKPAGQEE
>HCH_06121 Transcriptional regulator
MDLRELRYFIAVYELGSISAAARRCYVAQPSISAAIQHLESHLDTLLFSR
HSKGVYPSDSAQRLYPLAKKLTSEAQAISQLFRNKPQPMPFSLGLMRSLG
AERMSFLLKELIQSVESLELSLVNPEEPCDARIITPAYLREDERFQPIWL
DRYLLALPAGHSLSLQEQVSLEELDNLPFIHRSPCDALESLQQELRHRKI
SFLTRANIRTIEYALGLVSAGVGAALAPDWPETRERKDIVLRPLVDVKLE
LEIGLAYPKKRAMEGPLACLQGLCLRRWEEAGTQERAGG
>HCH_06430 predicted transcription regulator, contains HTH domain (MarR family)
MTKSRIVSSSHLLNERSVELSEFEYALIMAENTFQRWLVHCMSAAGNKEL
STIDILVLHNVYHRERPKRIADICFILHIDDTHTVSYSLRKLAKMGLVTS
EKVGKETFYSATESGAELCLKYREVRNDCLVDTLLTTGISNEEIGEVARV
LRTLTGVYDQAARAAASL
>HCH_07080 predicted transcriptional regulator
MKKRGLGDRGLNALLAGSRTRTNEEEENVKQDGVLKELPVELIQRGQYQP
RRDMDPESLEELAQSIRQQGVMQPIVVREISPNRYEIIAGERRWRATQIA
GKDKIPVIIRDVPDEAAIAMALIENIQRENLNPIEEAMALQRLQDEFRLN
QTQVAEAVGKSRPAIANLLRLLALHADVKTMLERGDMEMGHARALLPLDE
STQLAAANAIVEKGLSVRQTEALVRKLLQEKENPKEKIKKVLDADVRKLQ
ESLAERLGSPVTIDYNSKGKGKLVIKYNSLDELDGILAHIN
>HCH_03005 AraC-type DNA-binding domain-containing protein
MMPAVPLPFVIALLLAILLFQLIRQNEPSLRPAIIFTAACTLMVIIGGLR
WTFDVRFIRFLQPVMASMLPAIAWYCFTGAEASSRIKFWLHLAPVGVVTV
LSFTWAYWFPPIDLLLAGLYFVYGVALIRMASRGPDALPVIRFSETLQAL
KATKIAGCTLIISAVSDVLIAGDFDFYQGAHAATIVAVVQLLLLPVIVYG
VVTFGRSIPEGEGGAISPTGESAPVMPENVADNLIESIPQPEMEPVTSQE
ASSESGADDQQIIQHIDQIMRQQQLFRDPDLNLNRLARRAGIPSRQISGA
INRVYGRNVSQVVNEYRIEEAKRLLQETDLPVTSLLFEAGFQTKSNFNRE
FQRVAGMTPSDYRRSVSSGE
>HCH_05501 sigma54-dependent transcription regulator RtcR
MAIRKRKHKVVFGFLGSTMDAVSRRRGKYEKRWQRWRPTVSIAQHPEAFP
VDRLVLLYNPQDRELADEVIADIGDVAPKLQVDLQQLDFDAPWDLHKVFP
KLYQFIDGYPFDTEKEEYFFHITTGSHIQQISIFLSVGARYFPGKLLQTA
PSRDHEGGSKVEVIDLDNAPRSVAEIFSQSRKRDTDYLKSGIDTRNADFN
QLIKQIETVAIRTRAPILITGPTGAGKSRLGSRIYELKRKRQDVKGAFVE
VNCATLRGDNAMSALFGHRKGAFTGAVEKRDGLLKEADGGVLFLDEIGEL
PLDEQAMLLRAIEDKRFFPLGADKEENSDFQLIAGTNRDLRKDVIDGRFR
EDLFSRINLWTYRLPGLAERHEDIEPNLDYELQRFERENGIRVRFSQESR
KRYLKFACSLSALWKGNFRDLNASVTRMATLAEAGEIDVALVESEMERLG
YLWGMELRSTTQQVEAILLENLLSPEQIEEMDHLDQVQLEAVVRACRDSS
SAAEAGRRLFAASRLKKRRLNDSQRVAAILDKYGLHFDQIKNAW
>HCH_02485 Transcriptional regulator
MNALDSFDVALLKALQEDCQQTSQQLAEKIGLSPTAIQRRIKRLREQGII
HKEVAILNSQLLGNRMTVIIQVILEKGGPRIVDAFKRRIIKFPEVQQCYY
VAGEFDFVLIVNVANITEYDLLTRKLFPDDMKISKFYTIIAIEAVKADLS
LPL
>HCH_02265 predicted transcriptional regulator
MRKDSRLSRVLHVLIHLAASDKPMTSGQIAEMLSTNPVVVRRTMGMLRVQ
GYVDSAKGHSGGWTLIKPLNEITLLDVHNALGGPTLFTLGLTDEHSNCFI
ERAINEALKTAMDDAEKKLLSRFGEITLDILAKRS
>HCH_00939 Histone acetyltransferase HPA2/related acetyltransferase
MNIDVIDYDSQYAEAVADLFHGAVHGVDSQMYTPAQKEAWAPTPPDYDRW
KARLDVKKPFLALSNGRLLGFIELEADGHIDCLYTHVKCQRRGVATQLYQ
RLEREATDAGMTRLYVEASRAARPFFESKGFVTTQLNEIQRNGQILVNFT
MEKKLTKR
>HCH_01534 SAM-dependent methyltransferase
MLLNFWPMNDSMLPHSDSAGTEAAADYAELAGVYKACGDALRLEILRVLE
RNAYGVLELCSIFDVKQSAMSHHLKVLAKARMVEAQREGNSIFYRRPILA
GDDSAELARLQLYSNLDLLPLTTDTRDRIGNVGEQRAQQSQAFFSRYAEH
FQAHQELIAEYPLYATPVRDMLQQQLAGEKVNRLLEIGPGEGAFLEDLSQ
MADSVIALDNSEEMLQKARDFADARQLSNVRFIVGDTRSALEQSVSVDVI
VMNMVLHHVASPADMIRDCAALLRPGGMLILSDLSRHDQSWARESCGDLW
LGFDSTEISRWGAQSGLAEGESIYIGVRNGFQIQVRQFLLPKNGNRALTG
EAACQSEGSATSTHPSHCNL
>HCH_01444 ATP-dependent transcriptional regulator
MILTSKLQPPQLPTQLLPRDALQHRLGGILKKPVTLVSAPPGFGKTTALA
QFLHREQLPYLWYALDEQDNVPGIFWRYVCAGFESVFPKIGPRSARILSV
DDDALNAVRSLLDELTQLGRTWRRPESMLMAIDDVHYLSDPILLQQLDYF
LDHLPPYLHVALISRTIPPLHIPRRQVRDSLLLLDAEHLRLTEIETPKFL
QTRLGLNLEAAEMKKLHRLTDGWIGALQLYGLNLQSQPANPLLNLNAPPE
NVAAYLAEECFQQQDDWVQAGLLNLALVPRFNLQLANQLCPGADAALLLE
TLLKRQLFLSETSADGAWYRFHDLLRDWLQLRNQDRPPGELQILHGQAAQ
WYAEQGYFLEAMEQWTLAGDWEQTALCAGRALPEILRMGHYPLVARLLAK
IPPEQMRRYPKLLAQRAFLQLTRMRFDEVDADLDLAERYVDAMLEESGNP
QTLTRLKRQYGLQESESIRELKCMIILGRSHIARMTDKPELATEQLEQSR
DFLPEQDSPFTAWLFQGLGADEYIRGSLHAAQYLLMRALRSSRKYEEGFC
LIATLSWLIPVLLQQGKLQFAKELLDEQQSWLESRHMHCLPNWGNLHYLR
LLILLELEQPAAAAQELERLWDCADERVMAVDRVYHKWGEFALRLAQQDY
QQAEKALHQLDAYFQQHFTQWNFVVPSPATLKVLLDALSGNPFPLAQWAA
AYDTKAPIVNLQRQTIELMMYARIKIYQQADELDLLLERLPLIQKAGNLY
FSINLLVLCCLNELAQARPSSAREFLTQAVNAAAPLGVRRPFREEITFLQ
PLLMDMARRGQATTFISELSVYSAPQTRPQRNHSNSPLMEELSQRETTIL
NHLSAGRSNEEIAVALNIAASTVKTHLRNIYAKFGVRRRTQALAIAREKG
LV
>HCH_03302 Transcriptional regulator
MQDKRITSDDVARLAGVSRSAVSRTFTPGASVSESTRNSVIAAARKLGYR
PNALARSLTGQQSGLVAVVMAEFANPYESQVFYALTQALQKLDKVSMLVT
PDESGDINNSLQLVGAYQVDSAIIAAGSLSLQATQICLTMGIPSVLMGRD
DPFGKICSVQTDNRMAGRLAAEHLVNSGAQRPAYIGGRPDGQASQERKQG
FFDSLRDQGVEPLGHCDNPDYSYQSGYQSALELLQRRPEIDSLFCAFGAM
DAIRQQLGRKTPQDIQFVGADNVPMAEWPGYQLTTISQPVELLAQAVMEN
LEIILTQGQAMARSRRVAPWLVSRATTRNA
>HCH_03348 Transcriptional regulator
MSFSRAAKSFGVPASSISRRISDLEADLGVELLHRTTRTVRLTEIGMIYV
EQVRAGVTQLDVAEEMVGLHSRTPSGTLRISALPSFSQLLRPAVIAFNQR
YPDILLDLYFNDAVVEMGRDRIDIAIRSSLLTQERVIAHKIHSHKYLLAA
SPEYLKNHGAPRTLEDLQDHPALLYRGPNSVLKWYGQDAGGWYEVPISPL
IISNDGETLVAMARQHRGLVLLPEWGLKSFINRGELEAITLNQPISVRRG
AEASLYMI
>HCH_04560 predicted transcriptional regulator containing the CopG/Arc/MetJ DNA-binding domain
MPRTITFQPSAELESFISSMIETGSYNNQSEVIRAGLRLLQEQMAASKLQ
ELRSLIDEGEASGELKNWDVNEFLARMKKTSNDG
>HCH_06075 AraC-type DNA-binding domain-containing protein
MKSPSIHDRHDANTHTDASGVVSFHFGEPEIMEGSHQHCHLEINILLSGA
LRLSYLDQLYELESGDVICFSALHRHQVVSADESAVALQLRLPLFLLTDM
CANEMFKHLLIRGTPYRSNATGLLSLDTVERWAQELRCMDGPLQDLVLDE
ITLFLRRMIMRNPCKSGQGAGCGEYRSRHLHHAHCMVDFINGNYRTPITI
ADVADGVGLHKNFAMSVFKKAVGMSVLEYLTDLRVNHARRLLLYSQDQVI
EIAFASGFSSVTRFYEVFAKYFNESPLKYRKQHADPD
>HCH_01884 Transcriptional regulator containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs
MSTLHIYNRSTLEKNRMASPTPNAKSRYLTLYEELKQSILAGQLSEGERL
PSSRSMADARGLSRTTVTSAYDQLLSEGYIVSRRGSGCYVASPLPGVDFP
AALTPRAHRSGPAPALSTWGEALRRQRPLKTISPSAAIDFQYGNVDLDEK
SQHIWIKSARHWAYRQSRHYGDTLGLPALREAISAYLQLNRACRSHPDRV
VITSGGQQGFDLITRLAINPGDRVAVENPGYPRVKQLLTALGANLIPIAV
DEEGLKVEDLPQGSRAPKLVYVTPSHQFPSGCVMSLRRRLALLEWAQAND
AWIIEDDYDSEFRYCGKPIESLQGLDHHERVIYAGTFSKVLFPALKLGYL
LLPESWLEPFAFAKQIADRHSPWLEQHILAEFMQTGEFERHLRRMRKRYA
MRQQTLATALQPREGDVEILVEGDNAGLHLVCWMPSLPLSAVSTFIEQVQ
TQGVRVYPIHPFYHGEPPAAGLLLGFATLTPAEITQGVRIIKRTLREF
>HCH_05536 predicted transcriptional regulator
MSNDPYFSQAPRISQAPDIASVPDITKVAALLGEAARANMLIALLGGKAL
TATELAAEADITAATASSHLKKLTDAHLVIAQKQGRHKYFQLRSREIAEF
LETLLNVSATVEHSRTLTGPKDPALRYARVCYDHLAGETGVRLLDGLKSN
GVLIEQDQQLLLSPSGRNLFNSLGADVGGLEKLRRPVCKNCLDWSERRHH
LAGSLGQWVLQDILNRGWARKDLDSRVIRFTPGGLQALRKRYALTDLPA
>HCH_01945 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
MVLSQPLNLLLLLFIAEIFSSARRRAVGCEESVLSCKLGVLLLPGFSMLS
YASLVEPLRVCNELLDERQYRLVRLGAEPVVASGDGVAVSVDRSLAHVAG
LDALVVCGSVGLYKTPLLEKEWLASHNKDLSWLGGVANGAALLLEMGLLR
GRKASLQIPDALSAQARECFPSQDVFSVDANVWTCRGGTAALDMALFMVG
RHHGVELAEMASQAIMRERLGGAKTTGRKRPDPLAKREAPALCDAVQLME
NNIEEPLTTDDIAKHLEISRRQLERLFKRYLDSVPSRYYLQIRLEKARDM
LCSSAMSITDIGLKTGFSSGAHFSTAYRNLYGLTPSEERAGQP
>HCH_02298 Transcriptional regulator
MARPHLPLNAIRAFEAAARHLSFTQAAIELCVTQAAVSHQVKVLEERLNV
KLFKRLPRGLMITPEGEALLPTVNQAFDRMSEALSRLEGGQVREVLSLGV
VGTFAVGWLLPRLADFQQQHPFVEIRLSTNNNRVDIAAEGLDYAIRFGDG
AWHGVDAAPLFEAPLTPLCIPALAETLCTPENLSGHTLLRSYRANEWSNW
FAAAGMAQPANLIKGIVFDSSIAMMEAALQGVGVALAPPLMFSRHLASGA
IQQPFSCFISEGGYWLTRLKSRAPTPAMDAFQGWMLQRVEAESLRIAK
>HCH_00882 Rad3-related DNA helicase
MAIKTSASDKLTYKLSVREAAHFLAQLGDLDHQDRETASAREGQLAHKQV
QESWPADYVSEAPVKITLSEADFQLQLQGRIDGLRVADDHVLFEEIKTLR
QDPQRLPLGLAERHRLQLLLYALLWRQEQTAPPPTPSRLRLNYVRVPDME
QTRFDNEMSCEEAQQESDALFQRLQDWYRSLTQHRFERNALLRDLDFPYS
GFRPGQRELARQTYLSLRDAGQALIEAPTGSGKSLATLFPALKAMGEGHL
DQVMLITAKTSSQEAALKALRDMRLHTTSLRVLHLHARERICGGDSVCDP
LDCPRRRDFYQRLPEAREEALAAAWLDGERLRDIALKHDLCPHGLQGELA
PWVDVLIGDYNYAFSPQVRSDSLFTRNRVGLLADEAHNLPDRARDLFSAE
LSEAPFNRIGRQCKALKKDANAVAKAINQMQITPEQAPGKGQQALEGRLQ
DFCAAAENWLMSPQDLLAPADTELNRQVQEAIFNAQAWIRLAPSIGDDFA
CFERHWEQQRVLSLRCLSPARLLRPMLQACHGATLFSATLTPPYYYQNLL
GLEENPRRLRSLSPFPPEHLGIFVAPYLNFRLRSRESQLDAVCALIHQTI
ASRPGNYWTFTPAFSYMEQLTERFAALYPEVEFVQQTRQASQEDQQRFLA
RFRKARNLLGFTVIGGVYGESIDMVGDSLVGCIILGPGLPQISPVNEQVS
AYFERQGMDGFAYAYQLPGWQKVVQAAGRVIRTELDKGVVILVDDRFTKP
PYPALEPQHWRPRVVRTPKSLQTALLQFWSQDSTPDDNSDVK
>HCH_00109 NAD-dependent protein deacetylases, SIR2 family
MAHIVVLSGAGISAESGLPTFRDVGGLWKQYSVHDLASPGGWERNPQLVL
EFYNTRRQQAREAQPNAAHTALAALESQHRVTIITQNIDDLHERAGSSNV
VHLHGEIMKARSSVDESYLVEMNDQDIALGDLCPQGKQMRPHVVWFGEMV
PMLESAADIVATADVLLVVGTSLQVYPAAGLVDCARPNCPITVIDPGEDV
KVKGATIIRKTACAGVPEWIASLKL
>HCH_02066 hypothetical protein
MSGKWLTYVNENLFFAKLQLQWKDTSSTVAERECAGRAALRFLQQAYVGF
LNELAEQRRIKVKIESLADLEGQLEVESPEVISMKLAAAQPDSWLAQLLK
QYGEISRPRKNETPQDENIIAATSTVSAMEAAAILEFMQAFINEVREHSF
EW
>HCH_03393 predicted transcriptional regulator
MSTKTKNGKRVFLQNEDCPIRNVVSQVGDKWSMLILFSLVEGPDRFNSLK
TRIEGISQRMLTQTLRDLERDGYVNRTVYPEVPVKVEYKLTSLGEGLAKS
LWKLVSWANAHHDEIRNARREYDRDNG
>HCH_02869 hypothetical protein
MDINDAIKNSKVVFDGHGKYTHKQAIVILLLIARYSTERIAAALGVGVPA
VKQHLQASMHNVRATDRTDLVAQLFINGYLRPRAETSEPSIRGVKRWITL
SIVIFLLFSPAAMRTQQRAAPRPTRTAQVRIQRSGGRPKDYLYTNELVG
>HCH_05802 Transcriptional regulator
MWIKRRFMVDLSSILVGEPVDKFDEKILQSLRENARQPVSAIAEKVSLSR
SAVTDRIRKMEETGIIRGYQVLVTQAREDQVSVYLEISYNEIQCTEMAQI
LRTIPEIKVCHGVAGDTDMMLFLKAPNMARIHEIRDRLTAIHGVGKIKTH
VVMSEYINEFLNA
>HCH_02247 Transcriptional regulator
MAVRAEKKQQVNRNICNAALRLCRTKGYSGVSLREICREAGIAPPTFYNY
YPNLEELGLAIIDEAGLTLRRLMRQTWKEVDVREGVVRRTIRVFGRYLEE
NGDLFHFVAAERVGRVQAFRDAIEREVKHVVEAMAKPLAEVGATTGRPIA
HPLYLSEMLVNCAFQAGVESLSANTEKRNEIIERTIIQARMAIYGSEVMA
KGAVTSVSAE
>HCH_06410 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MRILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVV
DLGLPKRTGLEVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLV
KPFHVAELMARLGALLRRSSGFSSPVIQAGPMTLDTRAKLVQIDGSALEL
TAYEYNTLEYLVHRAGQAVSKTELTEHLYAQDFDRDSNVIEVFIGRLRKK
LDPDGVNKPITTLRGQGYRFNWSPQKTA
>HCH_03493 conserved hypothetical protein
MHIGPKFLLAAIRRRIKDEGLSYGYLSEKTGIPLSSIKRHLHNPSLGLDK
ILMYVGYLNTDLVELTKLANKLQHENEQFISDKQSELFLEHPYLLDFINM
VTSHNMTPEAVAEKHGLSETSLRFYLRIAEILGYIDDFGDGSFYQSGRRY
LLEEGSALDSLFRRRFQEESLSHNIHPGVCVGRIRMTEAQRVQLEDDLYD
KLIELNAVNSSNDEGEPTNVLMRCTPGKLTQFSDGLPNIDGQLLKYVSEM
FAKA
>HCH_06838 Exoribonuclease R
MLNSDALTQLKQFKQDLRIANNRFEGTVKGSPGRFGFAVLDDGRECFLNP
DEMQKVFPGDRILVEVSQDDKGRDVAKVVQHMRSELKYFVGRYFTRGQGH
FVEPDLMGMNRWIFIPPKKRQQAHVNDLVLCRVLQHPFPEGKPQAEVVKI
IGKPGASGLEVNYMLAKYNLQAHNRASINEAELQKQVAAELEKRKDLRET
PFVTIDAASTQDMDDALFATARPEGGWELLAAIADPSTLIPEGGDIDKYA
QRLGSSFYFADRTLPMLPAKLANHFCSLKSGEDRLALVCTMQIDADGAIS
SYSIEEAAIRCAANLTYEEVATALASGDASAHAYDATLQALNEVKAALAS
HRRAHALVNEDRPDYQLELDENGKVKNIHRKINSVAHSIVEEAMVAANRC
AADFLKQNTERSLYTSHSGFRPERLDQIKQIVSEQISDYDCSDLHTWEGF
KKFMDFLDANPPEVPVKAIANRLLARGALSDQPCPHFGMGLPHYTTFTSP
IRKYVDLSIHRQIKSVLKNQKPHTLNAKAILQLQESLRAGRSAVNESETW
LKCEYAQTLIGKTFDGVVQHTTGSGFQARLDENGIEGMVNLGALQEKFRF
DGTYFQHTGEHRQFRLEQPVKVTISAVDMEKKLIQMELAEPAPVAQPAAA
EEPQTQE
>HCH_04420 Transcriptional regulator
MYAEPSHSLEREWALERLRTALQEGLPLSPRPYLILAEQSGLSEQEVIDA
LRTWEQSHLTRRFGIVINHHKIGYTSNAMVVWRVAEEEVNRLGAEISRTG
LVSLCYQRKPHGPEWPYNLYCMLHGKSREEVLRRLQRLKAQCGLQETPCA
VLFSLRQYKQCGGRYVHKSPHVRAKEVLCPPGQ
>HCH_06618 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MRILLVEDDELLADGIQTSLSQQANTVDWVASGEAALHALKLEQFHLVIL
DLGLPDIDGLTVLKRLRDRGDEIPVLILSARDQVQDRVKGLDAGADDYLL
KPFDVSELKARLRALSRRGSGNAHPEIQLANIRILPSSYQVYKSAEEVRL
SRREYALLYELASHRGRVLSKDQLEELVYGWSDDVSSNTMEVHIHNLRKK
LNPDLIKTVRGMGYMIEKE
>HCH_06799 AraC-type DNA-binding domain-containing protein
MRGHYVAVLIDLLVERGVDRAEFLKDCQLQEDELNADTLIDQRRLEQVTR
LAAERVQETGIGLLVGRRLNVNTHGALGYAAMASASYEQALQLLVKYYRV
QAPKAYFELRTRDGYYELACESSFTLPERPWVTTEFLISSIYTSTEFLLS
GRMQGVEIHLSYAEPPHLELYREIFQAPVRFRQTFTGILIPFSVARQPLP
SADPMAASLFTKRCESIQHDERDEQLPRRVKEMLYAGAGEFPSQTELASR
LHMSVSTLHRKLAEQGAAYKALLAEVKKELALQHLRDSRLTVDEIAQLLG
FSDASNFRRAFVGWTGETPSEFRKRSL
>HCH_01757 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MATGAGTGLKIYNVRDTDTVDTNEAWRILIVEDDERLADLTKEYLESNGL
MVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLSICRKVRPSYNGPIL
MLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQGEAA
AESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLL
ASSAGRVLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRI
KTVRSKGYLFVKEA
>HCH_03198 Transcriptional regulator
MPWKPEHKQQTRERILDSAARLFALNGFDKVGINDVMAHAGLTRGAFYAH
FSSKTQLYAEAIVTSALQGRAMLQPDDNQPPQLEALINGYLSLEHRRGDQ
ARCPLAFLTTDIAQREEQVRDTYTRVFKGFVNALQQHLNPEDAASQEQAM
RTAVVMIGGMAIARAINDEELAGSLLEVCREAALVERKL
>HCH_04053 Histone acetyltransferase HPA2/related acetyltransferase
MPSDNPCVIRPARPEDGPRLLSMMRQLAEFEGYAEDFAVTLEELERRLFV
NRDFGVYVAESDGQAVGMLVYYYLPFTYDLTPWVYVKELFIEPPYRYLGL
GGKLMAALARECLREGGRKIRWDVLATNEPAAMFYRSQGAKCEDNWRIFS
LNASEISRLAGYE
>HCH_00945 hypothetical protein
MALITRLTRLFKADMHAVLDRLEEPDALLRQAIREMEEEVSQNARRLQAK
EFEIQQVNGRVKEVEKSLGGLEGQLDLCFEAQNEKLARNLLRRKLEGELL
LTQFRQQAQPTD
>HCH_06597 Phage shock protein A (IM30), suppresses sigma54-dependent transcription
MSVWKKLVTAIKGGANEAAEAVVDSQALRILDQEIREAKEELRKSDHALT
QIMAKRKLADQKVASLKASVAEYEGHARKAADSDRNLALECAQKVVELRD
QMDAEQKYVDQFNQSEQTLRRNIAQAKSNLRRMEQQIDMVKATESVQKAQ
VAVSSRHMGANSKMKTAAESLQRIQSRQNQRSAELDAAEELASEESGDSL
DAKLKAAGINGSNANADDELARILGGN
>HCH_05008 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MKIGLLEDDQNLADQLLLNLRNSDFQCRHYNTGKDFLFAVTHDSFDLLIM
DWQLPDMDGIDILRKVRQQQEWPIPVLFLTQREAEEDIIEALEAGADDYM
VKPARPGELIARLKALSRRNRTEESDAEEASYGPFSINHKKRTIQLNGEP
LTLTDKDFDLTTFLFENKGRLLSRKYLLERVWGVSSDINTRTVDTHMSRL
RRKLGIKPENGFRIKTIYQHGYRLEEVE
>HCH_01117 predicted transcriptional regulator
MKNCNELDIAEVAKLSGLPASTLRYYEEKGLIKSIGREGLKRIFRSTVID
QLGLISLGQYAGFSLEEIGAMFSHDGKPKIDRAQLIEKASELDQLIQRME
TMRDSIIHVANCPEPNQLECPRFQTLIRSAARKRHNEGRLKGKPGKSQQG
KGEKD
>HCH_04847 Transcriptional regulator
MQPDRIDKKILSQLQSDCSLTNLDLAESVGLSPPACLKRVKKLKQQGYIQ
KQVAVLDPDAFGACLHMVVEVVMERDRLDLYQQFLKRATAAKEVKQCYQV
TGEVDFVLVVTVPNMTAYDKFCNEVLYAEPNMRKFRTLISMQRHKFDTTL
NLDAIPS
>HCH_06458 Transcriptional regulator
MKTTIKDVARRTGVSIATVSRVINGLGGYSNDTRKKVLSAIDEMGFRPNA
VARGLVSKKTHTIGVMLPDVSGMLAAEILKGIESVAKEQRYSVIVCNTNY
SGDRSQEYVRTLKEKQVDGVLAVSEYMTPEKSKALLSLNLPVVLISTLSY
SYPFPYVKVDDKQAAYSAVCHLIDKGHRRIAMISGDRADLIAGAPRIEGY
VQALRDHGLSVDESLIRYRAEFESFGFHSGALCMEGLLRDKPGQFSAVFA
ASDELAMGALSCAYRHGVRIPDDLSIIAYDDTRIAEMATPPLTALHQPLF
AMGSRAAEMLLDMSAAGTLEADSVIIPHKIIERESVRAL
>HCH_01696 sigma54-dependent transcription regulator RtcR
MNRKNIVLSILGTTLDVVSKRRGKFEKRWERWRPNVSIAQRPEHFPVDEL
HLLSSRKDMALAEEVAGDVKVISPDTQIAIHEVNFSSPWELEVTYLQLRD
FLSDFRFDPSANYFFHITTGSHIQQIVIFLLHESRLFPGKLLQTAPPKEG
ATEPGHQIIDLDLSKYDAIAERFRKDHLEGEDFLKSGIQTRNPAFNRMIQ
QIELVAQRSIAPMLITGPTGAGKSHIARRIYELKKKRNLVSGDFVETNCA
TLVGDNAMSTLFGHKKGAFTGAVDKRDGLLKRADKGMVFLDEVGELGLDE
QAMLLRAIEDKCFLPMGADLEEKSDFQLIAGTNKDLRKEVREGRFREDLF
ARINLWTYRLPGLAERKQDVEPNIEYELDRFERNHGERVTFNKEARARYL
EFALSPEALWPANFRDLNASIVRMATLADKGRIKTDHVDEELQRLRYLWS
HAESPTMASSLSLDDFLAQYLDLEQLEHVDYIEKVQLKAVIEVCRNCRDG
AEAGRTIYNASRLRKKQTNDSHRLRQYLAKYGLHFDSIRQVNSV
>HCH_01634 predicted transcriptional regulator
MKDTDLVARLGKRIQQLRKSEKLTLEQLAQQSNVSRSMLSQIERGQANPT
FATLWNLTRAMGIEWSELVDESEGVSHSPIEHIIAAQTPKIDNPQGGYHL
SILSPPHLVGSIEWYELRMRPQGKLESQAHTQGCMEHLTVLSGQLEVVSG
TQSQRLAQGDTARYHADVAHTIQNPGDSDTIALLVVMNHSHR
>HCH_00015 transcription regulator (ArsR family)
MSTDNVFKALSSTPRRRILAYLSKSPLTAGEIADRFDISKPAISKHLSIL
LASGLVQEEKKGLYVTYSLVEENVANALMSFLSEVCSLNRYTQDESADSD
ALSEPAQEASEGKQDALATIVEKS
>HCH_06514 Transcriptional regulator
MTSINDLTVFHQTALHGSLTAAARELDITPAAASAAIKRLEQSLDTALFV
RSTRSLRLTGEGESFLQHCRAALNALDTGRRELLAKKGEIGGTLRISASS
DFGRNLLMPWLDEFQTQHPNLVLRLELTDRVADINRENVDIALRYGAPPD
SNHVAFNIVRTRRIICGSPAYFERYGDPLTPEDLQNHNCLLYLVDERAYD
QWGFHDGERRITVNVNGDRISNDAEAVHRWAVAGVGLANKSMLDMCQDLL
HGRVRTTLTQYACAEISMYLICPGKKQVTPAALLLRDFLREKCAAALAAV
E
>HCH_01391 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
MTTPLLLIDDNQVYLQTLARSLSRRGESVLTASCGEEALSHLEEASPARA
VLDLNLAGDSGLQLLSEMLQRRPQLQVVMLTGYSSIATAVEAIKRGALNY
LCKPVTATELLAAFGEPREEAPVESEMDTDATLSVRRLEWEHIQRVLQEN
EGNISATARALNMHRRTLQRKLQKKPARR
>HCH_06639 Transcriptional regulator
MHISRIDLNLFVVFDAIYSEGGITRASEVLHLTQPAVSHALNRLRETLGD
ELFIRSSRGMTPTPYAHQLIGTVRQALNQLQRGLHQGQEFAPAQLETSFR
LCVRDLFDVLLLPALIKNCRAIAPKVVFNCLRSPREQILHDLASGRIDLA
ADVLISHDDSICHEKLFEDRLTCLLRRDHPALASEWSLAEMLRWPHVQVS
SREHGPGYEDIQLSRHGLQRKLGLRTPNFYGAALTAANSDLILCAPEQVA
RKLTQTIPLQVMPFPLTLNPLETYLYWHRSTDREPAHIWLREQTQRALAQ
GLQAVEEGVI
>HCH_04634 AraC-type DNA-binding domain-containing protein
MPFDQTPMGFRAKTIGEIILDHDRQLVKTEQIRVSIDSNGLEPHKGMTNS
ILRRYTQNMAKLTVSSHFVRAALSGAERQGKDVAELLRCAGIPLQAYQNP
RSRVGGPQYTKLMQCIWKVLQDEFMGLTDTVCKTGTFATMCYLVVHCNNL
ESVLRRGRIFYSLFEKPVTLKLEVHGDQAVLIVDAEATFHDPYHFFQESL
LVIWHRLACWLTGQRVALDEARFNYPEPEHSSEYRHLFYCPLQFNQPDTR
IYFHKRYLQLPVIQDEPSLKEFLKTSPADLLARPDDSNTYTSKIRALVGR
DLSQQMPDFEFIASQINVSPQTLRRRLKEENTSFQEIKDNMRRDAAIYYL
SRREMSINEIAFKVGFTEPSTFHRAFKKWTGVTPGDYRESVLRERQH
>HCH_01171 Histone acetyltransferase HPA2/related acetyltransferase
MNDASLAAQLQRIFDDEIPLTRAMALRVDQYDGQALALSAPLANNINDKA
TAFGGSLYSMCVLSGWGLLTLTLKSHDLKGDIVIQDSQIQFLKPLRDKRL
TVRCAFAEPRQVEEFINAYQQRGKARRELVAEILAGGETAVRFTGRYVAL
KAD
>HCH_01436 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MNLLLIDDDNDLARLLNRYFQRFGWELRHASAPSIAYAQLKQSQPDAIIL
DVMLPEEDGFSVCRKLRHDYTTPIIMLTARGEVTDRIVGLEIGADDYLPK
PFEPRELAARIQSITRRHASTEKPVPLMYFRDLEINLTTQEVLVAGRPLT
LTTSEFRLLQLFASAPGKVFSRDEIMNSLKGTEVELFSRAIDITVSRLRQ
KMKTKSKREFIKTVWGAGYRFVGEAL
>HCH_01510 Histone acetyltransferase HPA2/related acetyltransferase
MRNENTAMHIPDGRQSETILRTPTADDGPSVHQLISRCPPLDENSVYCNL
LQCTHWASTCVIAETADEADESGKKTPGGFISGYLLPEDANTLFIWQVAV
DRTMRGKGLAGKMLRAILARDACRTVSHLQTTINPSNQASWKLFEKLAQD
LGADMQRRTLFDASQFSDDHEEEVLLTIGPFDPSCLRD
>HCH_05570 Histone acetyltransferase HPA2/related acetyltransferase
MKLNELVVRAATAADTPDLSRIFFESRKETFYWIEADMFSIHDFLGSVRD
EEVYVADHEGVAVGFVSVWKPESFIHNLYVDKPYKNRGVGTALLEFCRRR
YAPPLQLKVAAKNEQAVAFYRHRGWCEIERGVDLPTGEYLLMHLTTA
>HCH_06734 predicted transcriptional regulator
MRGLQLKVSEMAKRSGVTADTVRFYTKQGLLQPTRDPDNGYQLYDRDDLQ
KLIFAKKARQLGFSVKEINQIMAQAEDHHSPCPMVRRLFEEKFAEVERQI
AELTQLKTRMQEAMSAWEHMPDGDPNGHTICRLIEHWEQETDAQR
>HCH_00715 sigma 54-dependent transcriptional activator containing GAF domain
MIEASLLADLVTELPHAVRYQRLMNAMREYFRCGAVALLRADGDSLRPLA
AEGLVQETLGRRFIIAQHPRLAAILASRRPVCFASDSGLPDPYDGLLESC
VGEPLPVHDCMGVSLYVDGLLWGAVTLDALQEGTFDAQAQQDLARFTLII
EASVRVTRLEQERRNLALMRQDGDRRGVTQDESEIIGSSDCIRNLLRELD
VVADSELPVLLMGETGVGKELFARRLHGRSPRRERPLIHVNCAALPESLV
ESELFGHSKGAFSGASADRAGRFEAAHGGVIFLDEVGELPLSVQAKLLRT
LQNGEIQRLGEDKPRQVDVRVIAATNRQLKESVRSGDFRADLYHRLSVYP
VWIPPLRERDADVLVLAGHFLELNRSRLGVRSLRLSRAAEQALCAYSWPG
NVRELEHVISRAALKAISRGASRNDIVTLDAALLDLDYGEEATAPSESPP
LTLAKVTHVRSLRATVEDCQREAIREAVNRHDGSWAAAARELEVDSSNLH
KMAKKLGLK
>HCH_04052 Regulator of competence-specific genes
MRLRDLKGLGPKSEKDLVDIGVDTPEKLREIGPVRAFLRLKQASARKPSL
NFLYAMVGAVEDRHWMEIAKSEKTRLLTELEGYRELEEILRAEGLSLEQD
>HCH_00595 SOS-response transcriptional repressors (RecA-mediated autopeptidase)
MVRVSHVTISQWEKGETSPRGENLHLLCSALSCQPDWLLYGKAERAGDEK
IAGYQPYASLGKVPLITPQQARVWKEIANTFHHKDAIAWRGISVVVGPHA
FAMKAVGDSMANPHGTPSIPEGAIVVVDPDITPVSGMVVVVGLKGSKEAI
IKKLVVDGPNQYLMSLNPDYKPIELTEESAVIGVVKRLEFDLLPD
>HCH_04700 Transcriptional regulator
MTLKELAYIVAVAEELHFHRAAERCHVTQSTLSIQLKKCEDYLGVQIFRR
NRHLVEITPEGREIVRLAQKALAAAEQIRSLSRDLRAAR
>HCH_00194 predicted transcriptional regulator
MRRADRLFQIVTILRSRRGATTAKIIAEQLEVSERTIYRDIQALMVSGVP
IESEAGVGYRLMRGFTLPPLNFQEDELEALLLGMRMVQAWSDRAMGRAAT
HALQKILAELPSHLKRMGEQTQIYSPQFFVDAKAAQFGEELRAAIRQKTL
IWVRYKRVDGVESERWLEPLGMFFWGRTWTLVAWCRLRKEYREFRLDRLL
ELRAAQETFETQKDKCLDHYLDRVTSLYNEYFQEHARTELPDPQ
>HCH_04130 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MSGHLRVLLVEDDIDLATTVLDYLALENMSCDHAANGVAGINLARANAYD
VMLLDINMPRMNGLAMCRKLREEGVDTPVLMLTARDTLDDKVEGFRAGTD
DYLVKPFAFAELIVRLQALSRRRSGQARLLTVGPLQMDLDQRQVRREGKP
LMLTPTGWQLLEKLMRHSPGVVSKSDLEQVLWPDSPPDSNAFKVHLYKLR
MAVDKPFASALIHTVPGQGVRCGEAERSEEDAL
>HCH_06484 Histone acetyltransferase HPA2/related acetyltransferase
MYEVVEKVAEVDDFMRLRQITGLTPRPREAAVKGLPRSLFGVCVMMQETC
VGMGRVVGDGALNFEIVDVAVDPAHQGRGLGRKVMESIMAYLQREAPDGA
YITLMADVPELYARFGFKLTRPGSEGMYIVKGR
>HCH_04422 Transcriptional regulator
MLAFTSKPEPGLSDVPEALAPLDRELILLTQEGLPLVPRPFDALAQTLGV
SADEVKARFERMLANGCIRRIGAAPNHYRLGYRANAMTVWDVDDARVMDL
GARIGALPYVSHCYLRPRKPPQWPYNLFAMIHGKTRADLDGYLQAMTAIL
GDARQASDQLLSTRILKKTGMRFRGGQ
>HCH_03985 Histone acetyltransferase HPA2/related acetyltransferase
MQGYRISTNLDEMDLDVIHGFISTSYWASGIPKELMGKAIANSLCFGVFD
PEDKQVGFARLITDKATFAYLADVFILDAHRGKGLSKLLMTQIMDHPDLQ
GLRRMMLATRDAHDLYSQFGFTQVENPDILMQVWKPEIYQGF
>HCH_04672 Serine/threonine protein kinase
MDWSCSVITVSPQIPNYEILDEVAEGGMAKVFKARQTLADRIVAIKIISP
AICLNKEFRQRFIQEAQITAKLNHPNIIQIYDIAPFEDTFFISMEFMEGG
SLTERIRSGRLTRDESTRIILQLAEAMNYAHKLGYIHRDIKPGNILFRAD
DTPVLSDYGIAKSLYHRGDLTTTGSILGSPPYMSPEQAMGRQLDHRADWY
SLGIVFYQMLTGAVPFEATDPISLGIKHKQEPPPPLPSHLRMYQQLMDLL
LAKEPERRLSSLDEFRAHLEAIKNVPVDTEATCLFTVESLKTAHGESAAQ
ESPTSTRRTERGGSVSSGVWRALGVVLMIAAVVGYGAYKNMTRPAPTYPF
VVVTEPVGATVTFAGEEGAYTPGASLPEGDYEVEVTAKGFWPKTFTLNHS
ADHRSHYVSLKPAKTAFTVDVTPADAKIRILNIQPKYEEGIPLDPGRYLL
EVSAPGYEKLTRWTEISGEQFTEQVFLVEKDALESLNIAFVDIPGGKYRM
GFDDGGVLWGGDPGQEVTLAPFKIMAYEVTFEQWDACVADGGCTNKADDR
GWGRGRNPVISVSWNDAEEFAAWLSVKTGRSFQLPTEAQWEYAARAGSRK
RFSWGDQISHKFANYGKDDCCGGLVNGADKWQFTSPVGSFPANQWGVHDM
HGNVWEWVQDCWSESMKGVPADGSARTAGDCRRRVLRGGSWYSPPKSMQL
VSRDANGVDVRYQVNGFRLVETPTQAPAAGAATQ
>HCH_00508 predicted transcriptional regulator
MDPLQLFKCLSDETRLRSLLLIQQEGELCVCELTAALDEIQPKISRHLAQ
LRKCGLLLDSRQGQWVFYRVNPALLAWVEGGSKSHR
>HCH_06886 NAD-dependent protein deacetylases, SIR2 family
MKHIVVITGAGISAESGIQTYRGENGLWRETDYNEVASLIGWRKDREKVL
TYWNAQRRIMAAAQPNAAHYALSRLEECYLVSIITQNVDDLHERAGSNQV
LHIHGELMKSRSSVNPKLVYQHGDRDINLGDKCERGSQLRPDVVWFGEPV
PLFSQAQKIVHSADIMLVVGTSLEVYPAAYLVEKRVRGVPMYIVDPNADS
EAHDAEVINEPATQGVVTLVEQLLEQA
>HCH_00168 sigma54-dependent transcription regulator RtcR
MKNVVIGLLGATMDKRGKGPARWETWRPTVGIFMQQDLLIDRIELLHDAR
DSRLANNVGADIETVSPDTEVSLRQISFSDPWDFEQVYSTLLDFAENYPF
KPDEERYLLHITTGTHVAQICWFLLCEANYIPAQILQTSPDRGERVAAGK
YHLIDLDLSKYDAISSRFKRQQLEGTEFLKSGIATRNARFNAMIQQIERV
AIRSQAPILITGPTGAGKSQLAGKIFELKKIRGSVKGEFVSINCATLRGD
SAMSALFGHNKGAFTGAQTARKGLLAKADQGLLFLDEIGELGLDEQAMLL
HAIEEKRFYPVGSDNPAHSDFQLIAGTNRDLQKQVDNGSFREDLLARINL
WSYELPGLKDRREDIEPNLDYELQKAEQQLGHKVSFNKAARARFLHFAQQ
PDSLWQGNFRDLNACVQRMATLSEGGRINETLVDEECERLQHFWRRSGAH
ESLPLLEDYLSPGQMAEIDTFDQYQLRSVIALCRNSRSLSEAGRQLFNRS
RLRKSSSNDSHRLRQYLNKFDLEFDNLKS
>HCH_04597 AraC-type DNA-binding domain-containing protein
MQLGDISVNFVELVREACHKLNVDPMPVLNEYGVTPETLASPKARISISR
FMRIGQALISTANQPALGLFMGQALRISHMGLSGYAAMTSPNLERAIRLW
IHYESLSSVNKRGSSRFYLTEESGVAQFYSISPYNEFNYFVVDCLLSGWS
ALAHWITGQERLLKEVEIEFEAPPYAQHYQQAFNCPVKFGRSRNALIFRK
EALLLPSIYANPATHSEIVSICNRELTTLVGATSLTERVKQIITPMLQGR
EVGLTETAKQLGLSEWTLQRRLKKEGVQFQQVLDETRKQIAETYLKATDL
TIGEIAYLLGFSSPAAFHRAFKRWFGVNPKPFKDQHASGRTDENTATGEN
T
>HCH_01190 Transcriptional regulator
MSKIDDIELFVRVVRAGGLAAAGREVGLSPASMTARMNALEARYQTRLLQ
RSTRSIALTEAGARFYEAGQRVVAEMAQAEAALLEKEGELRGSLRVTATS
DFGRHYVAPALAQFVSLHPQVRPALHLHDGVVNLIEEGFDLAIRYGNLPD
SNLIVRPLVADNRRVLCASPAYVASFGQPQTPEDLQAHRCLVMTRFGEML
AEWRFQSDSGWRTLTVEAFLASNDGALIRQWALAGMGIALKSWCDVSRDI
TQGRLLQLLPDQVVGLHGADAGAVGLQMIYPSRKYTPACVKAFMDYLGEF
VNSEAGL
>HCH_01700 Transcriptional regulator
MPSSINFKHLYYFWVIAREGSLVAASRELNLAPQTLSGQLASLESQLGGL
LFKRQGKQLVLTHLGHTALKYADEMFRVAEELKHVTSMITTQQAIKVSVG
ISASIHKLFAYRMLEPAMKLERQVDFSCQTGQVEYLVQELDHHRFDIVLA
DRLPTIQRSSSIHWYKLEESTISLFAAPSLARDLRSRFPKSLHGQPFLAA
TLESPYFHQLMQWLNNQGIKPIVRAEIDDSALIKVFGAHGLGVFAAPTIV
ADEVCRQYQVESIGNIDVVMENLFAITRSRLSGNLAVEAICKRYQH
>HCH_01654 Transcriptional regulator
MTRHDEVLVLIRRIIRAADLRSKQLGKETGLTAPQLLILRSIGDSRNTTM
SQVAQNISLSQATVTSIVDRLEKKSLVARIRDSVDKRRIYLVLTDEGKEV
LAGAPRPLQELFTSRFDNLPEWEQYLILASLAKVADMMDATDIDASPLLA
VGSVT
>HCH_00485 Histone acetyltransferase HPA2/related acetyltransferase
MTPNASQFSLRPVTPADNAQMGEVIRQVSAEYGLTPERGFAVGDASVDAM
YETYAIPGAAYWVVEHEGRIVGGGGVAPLAGGDGSVAELQKMYFLPVCRG
QGLGYKIVLMAQEFAKDHGFKQCYLETTAALKEAIALYERLGFKLLTEPM
GDTGHQVCEVRMIKALD
>HCH_06796 Transcriptional regulator
MKVSAREKIIESAYRLFYKQGLRATQVDQVIQESEVAKRTFYKHFPSKQD
VVMDALQERHTRWLQWFTDKVEALNTPGKERVLGIFDALREWFDDPAFRG
CAFLNVTAEIYDAQEPERELARRHKQDMDGKVAQWLKQAGVEDAALARQI
GLLIDGAIIRAQCFGDPDYAQTARALCAAILRA
>HCH_06423 Transcriptional accessory protein
MEKIYRVIAQELNAKTEQVAAAVTLLDEGATVPFISRYRKEVTGGLDDTQ
MRHLEDRLRYLREMEDRRQTILSSIEEQGKLTDELRAQIIDADTKNRLED
LYLPYKPKRRTKAQIAKEAGLEPLAEQLLADPTLVPETLAEGFVDADKGV
ADVKAALEGARYILMERFAEDAELIGRLREHLWGQGVLKVAVVEGKEQDG
AKFRDYFEHQEPLKGVPSHRALAVFRGRNEGVLSFQIVLPDEPESRLEPH
PCENIVAAHWRISDKGRAADGWLKDVVRWTWRVKLLTQLETDLMGRIRER
AEEEAINVFGSNLKDLLLAAPAGAKATMGLDPGLRTGVKVAVIDATGKFV
DHATIYPHAPKNQWSQSIAQLAALCAKHKVELVSIGNGTASRETDKLVAD
LIKQFPQLKLTKIMVNESGASIYSASEYAAKEFPDLDVTIRGAVSIARRL
QDPLAELVKIDPKSIGVGQYQHDVSQTQLARTLDAVVEDCVNAVGVDVNT
ASAPLLARVAGLNQTLAGNIVAYRDAKGAFLNRQQLLKVPRLGDKTYEQA
AGFLRIMNGDNPLDASAVHPEAYVVVNKIAEKNGRDLRSLVGDTTFLRSL
KANDYVDEHFGVPTVKDILTELDKPGRDPRPEFKFAQYQEGVEDIKDLKP
GMVLEGAVTNVTNFGAFVDIGVHQDGLVHISALSHKFVKDPREVVKAGDI
VKVKVIEVDAARKRIALTMRLDDEVQSGASAGARDAGRQPQKQKRNAGNE
SAAGGMGSFGALLLKAQKQQPGKKG
>HCH_03511 Transcriptional regulator
MHMDKWIGIQEFVTAAKYGSFTSAAEYLGTTKSNISKKITHLETRLGVTL
LHRSNRRLVLTSAGEVYFEHSTKLLKTLEQNDQLVIETQEHLSGPIVVSL
PPGIGESLLMEPICKFQQLHPDVTFVTNVSIQCIDLVEQPFDLAFRLSPT
IDPNLIARPLRRAPYRLCASPQFIKTHSPKEIQDITRLSCLAYSDQLSPK
NAVWSFKNPQNQQVLQLEINACIYSDSVTTLVQACHRHAGILYCSDFFVA
KHIAEASLVSLFEEWISNENQLWLVYPDRKSVKRRVRAFIDFVLESGIL
>HCH_00622 predicted transcriptional regulator
MAEMIFRIKETTKLTGLSRSTIYERVASGSFPPPVSLGHRAVGWFESSLD
DWQASLKAGVPYNQWVKRKEA
>HCH_02324 Transcriptional regulator
MNVSRIDLNLLVFLDVLLREKSVTKAANHLGITQPAMSNGLRRLRDMFGD
PLLVRTSEGMTATARALELQPMVRSILSDIDMVVQPKEVFSPATSRRVFR
IMASDYAESTLIPALLRHLRRVAPNIILDVLTPSDVSFLDVEQGRVDMAI
NRFDKMPQSFHQKTIWEDSFSCLLSVHNPLVFDFTLENYLNANHIWVSKT
GFGVGVGVNPKDVQRLGWVDEALTRLGRKRKISVFTRHYQVAMLLAQQHD
LIATLPSRAALLTLDSPGVVVKEPPFPIPPIELKMAWSPLLQNNSDHRWL
RQLITEVANEPEERETRAKD
>HCH_06669 Transcriptional regulator
MKKNNQNDQKDHVDAILRQWKTEKPDLQAQPMGIFGRLHRIHAFTHQTIK
ETLAGYGLSIDEFDVLATLRRSGAPYRLTPTQLYTAAMLSSGAMTNRLDK
LERKQLIQRQPDENDRRSVIVALTDEGMELIDKAVESHVETEWELLKQLE
GEDQEQLADLLRKWLVTIENKQ
>HCH_06413 Transcriptional regulator
MGRPTAFDPQEKLHIAMKLFWRQGFEATSLQQLCDELELNRFSIYNTFGD
KRALFHLTLDHYLNTVIRRIAAPLLHDEAALEAVVEYLAGLSAVLCSEGG
RVGCYVQNAGSEMGGVDELVQKKVDDWLRQLEMLLARALVRARDNNGLRG
DVDAEAAACYLVSVTQGLIALRRTCSRQCRVENAFTFLMQEVKGWAV
>HCH_06935 Transcriptional regulator
MYMPASFKVEDRSAMLDFIDRWSFGVLMTLKAGVLEVNQVPFILDRENNR
LYGHLARQNDQWKELDGADETRVLFQGPHAYVSPDWYESAGMVPTWNFMS
VEVRGRSELLPPERLPWLLEQLSDKHEAAFDEPWKMSKVPPARLEAMMKA
IVGFSIDIETLNGKFKLSQNRNPQDRAGVIAGLLTQPDENSRLIAQRMQL
LQKD
>HCH_03089 Transcriptional regulator
MEKQIDNHYRYLQQHFSYLIRQQALLPGEKLPSERDIGERFNLTRMTVRQ
GLQTLEAEGLIYRQNRRGWFVSPPAVVYNPARRQSFIEYVSSQGFEPSTD
LIGVTVNPADARMAELMKVDKGARLLFLQRRRSIDGRPVLIEHIYINTAL
LPGIEKEDMSQSLTHLLRNKYGQAYHSMNLIFKSTALLEDAARELGAAAG
LPGLHIERTNYDAAGRVLELDYEYWRHDAVTIQIDVNDA
>HCH_04256 Transcriptional regulator
MLDDLALFIKVAELGGFSIAAAATGVPAPTLTRRVQKLEAELGCQLLHRS
ARRLQLTAAGQKVFDESYLHLSCLDKQMALIKKDISAEEGEIRVLAPVNL
ANGPLRPLWGDFMSRYPNIQLTLQLNNKVEDFTGSQAELAVRVGPLANSA
LRQRRLGSIRTVLVATPDTAAQIEAQGADLNPAELERWPWVASVSESMRR
LRHRRTGEMVNIDWRPRAHINDLSLAVDILKACGGWMLCPVSLVWEDLQR
GDLRQILSDWEGANREVHVVWNDRNILLRRTQLLLDFLTEETRRIPSLLG
ELPDIEIMG
>HCH_00190 probable GntR family transcriptional regulator
MEMNLYARLADQLADQIREGVFRVGDKLPSVRQMAKKQQVSISTVNTAYG
VLEDRGWIEARPKSGYYVRKRNEDRLATPTQTRHTPKPRPANTSQLVMEV
QRDAAARKGVSMSAAIPALDFPILKQVQRTFAQMARSKTFLGIGYDSPEG
VREFRHQIARRAVDAGVFISPECIITTAGCQNAMALCLRVLTQPGDIVAV
ESPCYYGLLQMIETFGLKALEIPAHPQTGLSLEALQLALEKWPIKVALTV
ATFSNPIGSLMPDERKAELVKILGRYDIPLIEDDVYGDLYFGDHRPKAVK
AFDPDGRVLLCSSLSKTIDPQLRLGWVMPGRYFEAVSHRKFINSIALPTL
PQMVMAEVLSQGMYDRHLRQARECYRQRFARLLDLVNEHFPEGTRISRPQ
GGLVAWFELPRKIDTTQLYHRAHAEGVMLAPGELFSISGQYRHCFRLNYA
QGWSPERELAVRKIGQWVREELQSS
>HCH_05568 AraC-type DNA-binding domain-containing protein
MIIRDSQISAAYLRGLVDYLTIKRQNTSLFLQQFQISEAVIGEPQQRLPT
RLFSAMLEAAGVQLNDDHIGLHVGEQIKPGQYGVLGLSVMNCKTLREAVA
RHERYERLVCDVGHTTYRLSSDDVILSWDSCSPDLSRHIAEENIASWTTF
ARWITGAYVSPTLIRFQHSRPSDIREHERLFQCSLEFSCDSIEVHFPSVY
LDLPLRQHDPAMLALLDEYADRLLLQLNPEANFSDKVKAALTNLLQAGDI
SLQKTARTLNLSARALQRRLQEEGCSYQQILDETRRELALRQISDERLDL
SEITFFLGFADQSAFQRAFKRWTGRTPGQYRREQELTG
>HCH_05617 hypothetical protein
MMTETLLTLNALALLLRLLNSPSPGISGSLLFEEFPAVAGELVSGLFLKP
TGCLGYLTDGHQGFADLVWCPEIRRHRYFSVSAGWVEVSAERINRYMVDV
AVLLIWLQGLFGIGVHHRITSLIPDRFWHLGSTRFHGCLTHVYFVRSLDS
TERLLTFMSALEREASRAPAIVVCSSSRLPERMGLPRDMALEPLVSLMSR
SHEHCFLDDLSIRAILRGSSVAMSEEGGIGLSFTSDYRRVYWNGESYALT
KKQSAVMEALHREGGRAHKDLLRAAAETNEELHRIMRNKIDGKWVLHPLW
NTLIKKEGGGYYFLDGRL
>HCH_04027 Response regulator containing a CheY-like receiver domain and an HD-GYP domain
MTQDLASPDSASPAASDADVDYVLFVDDEKPILSSIQRLLRKQDFKCLFA
ESGADGLKILESQRVDLVISDMRMPNMDGAQFLSQVKARWPLTVRMLLTG
HSDISATVTALNEGGIYRYISKPWDDENLVEVIHEGLRIRRLEREKKRLL
NVTQQQNRELQKFNKDLEKMVAARTEEVRQTADMLELAYQQLKDSYDDFV
RVFSTFITSRGYLIKGHSQSVADLSKTIAEAMELSEADVKHIYYAGLLHE
VGKLSLSDDVLSRAEAKLTRQDAVEYQRYPLLGEMALTAIAELEPTSRFI
RHHTEYMDGSGFPDRLKGDAIPMGSRIIRAVRDFVGLQSGLMRTDAMSKD
DAFKLIQDNAGKRYDPLVVKLLAPLVDSYTGDDVLPHEDKLGVGALVPGM
RLSRDLKNTNGILLIAKGHVLTEKIIEKMLSLEKLENRKLSVFVMKK
>HCH_06978 Transcriptional regulator
MLASSRSSKSKSTAKNLRQDAMSKPDSLITKIFGIPEQISRHSAPLYLQL
QTKIREAVDAGVLRAGDVVPAEREIAAAMKVSRVTVRRAIDDLVEEGLLT
QRQGAGTFVTERVEQPLNYLKSFSEIMQERGKKPGSRWLDRSVGVPHEDE
RVALKLAVDSEVVRFHRLRLADDKPMGLEVATIPRQFLDNPFEVTGSLYE
ALAEKGLRPVKALQRLRAISIDETRAKLLDIPVDSAVLYIERLGLLEDGV
PIEFTRSYFPGDAYDFVAEIRNVSHFAPVGFHKSDGAEEEDEG
>HCH_00844 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain
MKIVLLALPHCAAASVHGILDIFTTANYCHARLSGAAGKRSLEPFFNINV
VTQNDQPVTAYNGMAIAPNAAFEEVEPDLIIVASAIEAITAGAALPQHLA
QFRQAYTWLQAHARRGAVIASACTGSFVLAEAGLLEGKTVTTHWRAAEHF
RQRYPEIRLDIDRLLIDSGDIICAGGATAYIDLSFHLIERFAGQGLASAV
SKLHLFDSKRQQQTPYITFYGYKSHKDDAVKKAQEWMESHYAEHFSVDDV
AALAGLGGRTFKRRFKEATGENPINYLQQLRVEAVKHQLETTLKSSNEII
WEVGYEDISSFRRLFKRATGCTMEQYRKRFSYVTPAITSYSFNS
>HCH_07009 hypothetical protein
MIPELFHDDVQFDREGFKLRLRQAQEYYGYTQQQVPDAIGVQRSKYAKWV
LTERSELPGLGELTKLCVLYQQWPIWFLAGVQGPSRHKGQQLLQDVTCLR
AGTATEIFNTWSAC
>HCH_01606 Histone acetyltransferase HPA2/related acetyltransferase
MHDQPSNARLGADSNLANPTTPMLTIDIRAATCADATPISHLMTQLGYAV
SPQETSVRITQIAERGGETFIAEKDGVAVGCIQASMDVRLAEGCFGEIIS
LVVDENGRGLSVGKQLIMAASEWLQERGCERLRVRCNAVRLEALEFYGKL
GFEHMKQQSILEKSIG
>HCH_01626 Transcriptional regulator
MTNEQLRAFVGVVEHGSFRAAAAALFKTQSTVSAAVAALEQEFDLQLFNR
ETYRPTLTIEGKALFREAKALLSKAHDLEMLGHRLAQGKAPELSISLSAM
CAHLPGLDTLKAFAKKRPEMRLHLHTEHLSGVLEQLLLEKAEVAIGPQVG
LDDRYEFTEVAKVTQVTVAAPGFTEAGGDGVVRQAQLRNRPHILIADSGS
LAPFDHVNVIPGGHRWYVNDFLMKKGLLLSGMGWARIPLHMVDAELERDE
LRFLQVENFPSRSLVPIYLIRLRNQLLSPLAQEFWDEMLGASL
>HCH_04026 FOG: CheY-like receiver
MATLAIIDDEENVLRAIQRILRKKPWKVLIFSDPYEAIDALKKEPVDLVI
SDYRMPEMNGVELLNSLKDVRPEALRILLSGQADIDGVTSAINDAEIYRF
ISKPWSDEDLLMTLENALEHNALVRENRRLLELVRKQEGALKKQLEELQR
LEAATPGITQVSWNEDGSIDLIDEDFDEL
>HCH_04002 Serine/threonine protein kinase
MPLIVHHSSITAAGVKDLNEDAVAVCAPSQERRLLNKGVVAALADGVSSA
EAGKEASATAVDLFIADYLKTPDTWAVSHAGQKILSSLNLRLYRKSQEFV
HEAKGYLCTFSALILKSRTAHIFHVGDSRIYLLRHGELTRLTRDHIVSLG
GGRKMLARAVGMDNNLPIDYSKTPLEVGDILILTSDGVHDFLDDETIKHI
VDHAPTAQEAVDELLQQSLQAGSNDNLSAIVLAVDDLPETTLEDYSNQLT
RLPFPPELEPGMALDGLVVEEEIFASSRSQLYLVRDQDSGERWVMKTPSR
NYLGDVSYIDRFIQEEWIGKRIDNPHVVRIIEQPQARTCLYYLMEHVEGV
TLQQWIKDHPFPKPKTAFALIAQVADGLSALHSQDTIHQDLKPANIIVSP
DNRATIIDFGSVYVAGVAEVFRPLEHIAALGTASYSDPLYLLGQNTGARG
DLYALATIAYEMFTGELPYGDQINECRSRFDYDRLRYRSAMQFNPVIPLW
FDRALQKGVAFDLDQRYQTMDALLQDLQNPNPAFLQDNPLEMEDRSPVMF
WQMLSGFWALILMLVLILFSCQGPS
>HCH_03684 Serine/threonine protein kinase
MTGAPKLQQFYIPEEQSIYLLSHNDAKKLKDWVALCKVQLEQLGYRDIEM
VGKGAYGFVFAGVTAGGEQYVFKFSRITLPQHLQDRLEEEAFMLGLVEHP
RVPSLIAFQRIRRQSILVMERAPGVDLEQYSLKVGRMPPRLVVKIAAQLA
DILRNLRSDKGPAGRPLVHGDIKPSNLVYNPDTEQVALIDWGSAVFAQLD
ENNQYVSANVMELMSSDLQQTNARLGDVYFIGDEQLNGGLSSPRFDEQGV
AGTLYALASGQSCRFGHRALPAVSLGLPAEFARMLDAMMDDDPTVRAKAG
DYFLRHMARLVMLDLPPVQETPLAPVWVRPQKRGIDTVVYSSRKSFLREE
GVKEELKEINDVQLDRYYKNFMQGMGETEKAFIAAVSRLGRYPVVGGLAV
RWEKEGVYIDTSLNLRDPDLKPAFVAAVNNMVNLARAIHRQGVFKSCLFN
ARDTLHVDREGPEKPFIPEPGLSLGYEVSATPDLEDQTRVHSYFEDGPDP
EEFLVLPIEIMEILELLNNIHHTGLIIFESLPTHLKIHSYYRLLDPSREQ
EFRYCLDAIIAAIPLIKGLGVSGFMKMPYKDTKFFSHIERLPEKYYPKNP
RDEAVALTAGPTS
>HCH_03901 Transcriptional regulator
MNLSQRHLQMFVTTAAYCNVSRASEILHISQPALTRALKELESQLGVTLF
QRTTRRINLTMEGERFLPVAQRLLNDMTVAIDMVRGEATGQQGSISLAVG
EAFGCTVLPAVLKVFAQSFPRVRVRIINDNSKGITRRVDNSEVDFGIGSP
VGNTGALLCTPLLSAPLGLLADPSQYKLGTDVDVSDLASLPLLKESNDTS
IHHLLSVNGSDVVAWMSIGIEVSSLAQQLALARSGVGVAVLSALGASHYD
AVSMKFSQLKPEINRKVFLMQRRDRVLSPSSRALLATIFEHMHSVPLHPC
VLVYDCHSSK
>HCH_05483 Transcriptional regulator
MKEQADLLYTFQAIARCGGVTQAAQQLGIAKSTVSGHLSKLEQIYDVKLV
QRSSRQFQLTAAGGKLLEHSLELVQLLTRTRTCMAEFTKQISGVVRITAP
LASGNMILPELLHQFRRIHPAVTFELTMSNEQLDLLKNNIDVAFRATALN
DSSLIGRRLGWIRGVMVASPEFLRQNPLGEELQRLSELPVIAYRSDEHWR
LVNAQGHEREINIRPIVRVNGLESARQLALKGVGVALTPDYIAAPALQSS
ELIHLFSDWRGRATPYHLVYPSRLTPSIAVKRFIDFTLEAFESGCMKDVL
AR
>HCH_03224 DNA-directed RNA polymerase specialized sigma subunit sigma24-like protein
MGRGEFFSAMENTFDPDELENLLARIALKDQKALEQLYKRVAPKLNGVAM
IILRDTDLSNDVLQEAFLQIWHKADEYRRGLSEPMTWMTSLVRYRALDKL
KAEGREQRRRERHDEIEQLLEQDLVESPLREVVNSNEKCRIHRCLRSLDV
LNRNAILMAYYYGYSREDIAVHIEKPVNTVKIWLKRGLGRLAQCLGH
>HCH_03285 probable regulatory protein, luxR family
MDTGQFLKGKFSFPLASQIVISRSRLTRKLDAARQAQIHCLTAPAGFGKT
TLMQDWAAPQKGRVIWFTAERSDNRLLRLGGGLLAAFANAGYGFLGCKEE
LGLLNEPSGAAHWSRLFIAELETAARRTGASLTLVLDNLHLLDAPEAIAL
LSCLVRDLPAPHRLCLLSRNPLAPALFASTSWNRVQHLNADELAFTLEEG
KQYLRALQAEGLLGRYAAPGSPGMQTQLSELWRQTDGWPIFFCAMAHRMA
NRNTPFAAKEELNTLPDFHRYMEEQVMQPLQLVQKDMQTRLRELAPISEF
NRDLLSQCLLPGESPALIQAMIHYTGLIVKVAQTGDEYCLRRPLREHLRQ
DATSTTEASALFNKAFRWRLANNQGRAAITLCIDNGYWRAAVHLLEKLYP
SLVSAGCWTQVVQWLAAVPAHIVGQRPLLQMLLGRKALFESAPASALVHF
KQAQTLLSSAQELDHPDGVYDASSRAKWLQEASALIASTQALYVTGHDQS
LAEQDSSCLLTRYHQGLHALHQGRLHETRKRLNEVMEAALADDPGMLTQV
IPVLGWLHYLTGETDLWRSGLASLRERIAPGCDLSHGFAWTSASTLFGLL
ENASTDDVKQGLQDASVLHGLCAPVELRFNLAAAQALLAIREARWDEAGE
ALLEAEVLQHSIPDPVRRTLFSLPALKAQRLLAQGGEREALHLLQAWGGH
YDQACFATQHEQLILSEILFALNRPEESLEPARQVKVWAEQGRCGLLLTR
ALAIEALALQKLGREEKAQQVFHDALHVGRMTSSLHSLVRKDAPEMKPLL
SAAKQQGRYPAYVGRLIEHYGQDIDQDDDDSANLAALSKREKQVLDLLVT
GMSNPEIADALCRSLGTVKIHVHNIYRKLGAANRVAAINKYNVATA
>HCH_04338 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MRILIIEDDRHLAAAIADYLELQQAECDFAFNGTAGLQRAARDRFDAIIL
DLMLPKMNGFDLCAELRRQGIYTPVLMLTACDTDEEQLQGFRSGVDDYVA
KPCPMPLLWARLQALARRASKQGETLRVGPLEIRLGEHRVMREGHEIRLT
PTGWKLLVTLMRRSPDVVSREELETAAWPGGDVDPGNFNVQLHQLRKAVD
KPFAQALIHTVVGVGVCIREDGA
>HCH_06733 predicted transcriptional regulator
MKKVSLGGCDRANPVLPFGFWLPRKLVEGRMYTWNDKPYRCPVEVAFAAV
GGKWKCLILWHLHLDKMRFKELERVVPGVSQKMLTQQLKEMERDGLIVKT
VFPEVPPKVEYELTERGHSIFPILEQMHGWAIAQFDLKKSAEDE
>HCH_06923 AraC-type DNA-binding domain-containing protein
MSEIFDRIKELARLIQRHCPTDGVRESDIPRLSFIRSSSPTEPVLAVHQP
AVCIVAQGAKKVISGEQLFKYDAAHYLVVSVDLPIAGQVMQASPEQPYLC
VRLDLDLTILSELILDEGSVDNSAPHQSVGVSLVTPRLLEAVIRLVALLN
DNPKDIAVLAPLAEKEILYWLANGDQGGILREITNGDSRIRQISKAIQHI
KTTFDQPFDMDELLKLTCMSASSFFHHFRTATHMTPLQYQKQLRLLEARR
RLFLGEQDICNIGYGVGYDSPSQFSREYARLFGLPPSKDLARIKNAGSSE
YWLP
>HCH_06667 Histone acetyltransferase HPA2/related acetyltransferase
MAKITRVAGAAIHPWLDELAKLRIKIFREFPYLYDGDMEYERNYLANYAE
SANSLFVLAQEGNKVIGVSTGLPLSDADEEFQQPFRDRRISPGNVFYFGE
SVLEKAFRGQGLGHCFFDERESFAKELGYSITAFCTVVRPLDHPLRPPGY
RPMDLFWVKRGYIKYPNMVTQYSWKDIGDSAATSKSMIFWLRPGA
>HCH_03613 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
MKLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVM
DIMLPDLDGWRLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLV
KPFAFSELLARVRNILRRGLVPLSGNQLSVGDLTLDISRRSARRGGSEIQ
LTTKEFTLLELFVRRQGEVLPRSLIASQVWDMNFDSDTNVIDVAVRRLRM
KVDDGHDIKLIQTVRGMGYRLDVRNEFH
>HCH_07038 Superfamily I DNA and RNA helicase and helicase subunit
MEVEIWDGGLQEQEVAAIEKIKAAFSDSVNAPKAPVRGGSLRDQLQSSYG
NNKVMLPWKGYAGFRFVEAKKEGEFDLVIVTHCNVIIVELKDWNHQPVTA
RGDTWYKGDQNMGRSPVSVTRGKKFTLDNKLKRLAQRFTNKGYPPFVHFF
VVMTGNADFSQLPEDQLHHTISLTDFLKFADRNTFNKHFRPHPNAQVLNQ
DFPIFDNLFIGPQTGPKALRVDGYEAKDKIFEHPKKVYKEYIAKSEISTN
TEALLRVWKFKNVEGNKAYTPEGRAEIVSREREVLQHINHQNRDLYNHCL
RSLTSFQKDEVTAEYSEVYELPPGHVRFNEFIGKYGKAFSELDRLNVTKL
LIAKFGDLHEMKIAHRDIADHSLWISPSKEVALSNFISAYHQPIGTVGDY
RKSLSVGAVEAQDMLDGGELTPFQQDVHALGLVAWHLLSGKRMSPKSLET
VQDDMLNSGQWFSEALLDAVAAKFATATEFFDALKQAEPAGEAIPTFDDA
ELDPYRHAINHSRQYREDDDFLVETAEKEVYVSGGRLVKAWLNAGGQGDD
SAANFQILKFLKLLDKLSSVKPTYLPEIREFGIASKSSSLYMVTDQVQGA
TWDKALIADDEKIELIGKFVAAVEHLHGLGVAHGDIHPGNVMLETESRSL
YLIDIPDFSPAGEELKNHSYSPEYIDGCTSFERDNFAVMKMSCELLGLSW
GHESETYPALADAIRAELEDPHFGFKDLGRFKKAIDSGNASSEQSLIEIT
AGNADEAITILPDNGHLYVKIEPNHKEPTEVKVTFIGIGGSFSAMFCKQQ
QALLVGFKPWPRSSIRKQDIDDSHFEIGIGIRVIPGRTQEMSALTKLLNE
DESFARAIELATAPEEKPEEDTLTLQLKEAFSRLDKQAVEPASAKTLEIP
TAKLWRAILDTETESYPNIEVSGETIPVADAHGELLIPYSADVDPLGGFS
SSDEVEALLVDKEGVERFIGEVSLKKSALKEIRLVKSRAAAYKLTDTDIV
FFRTKQDRASYRKRKRALERLLDREGVMPELMDLFDPSCEKAALNYGISL
SDADFARYDREDHHGNKISLNEQQREAFAKLVNNGPLSLLQGPPGTGKTE
FIAAFVHYLVEMQNTKRILLVSQSHEAVNTAAERIRKHCARLNTDLEVVR
FSNREGAVSPGLKDVYSNAITTEKRELFNAESKYRVEALSEAIGLEPEFI
SSVVLAELKLFKQIDHLETLLYQVNDLSDEKDIKELKEISVKLDLSIRSK
LSTEYGISLDAGARVSEAKDILISKLCREYGVRPDEARRVKALAKISRDM
QEALSGERVNVDEFYARSRQLVAGTCVGIGQGHIGIQENIYDWVIIDEAA
RSIASELAIAMQSASRVLLVGDHLQLPPLYSDAHKAALARKLGIHSSRTE
IDEVLRSDFARAFNSTYGDQASAALLTQYRMAPPIGDLVSKTFYEGKLRN
GERAIPDVYQHAPRALRSMVTWLDTSSLGQRAHHSEDRGRSIYNRSEADQ
IISVLKQVSEDAEFVAELSKLTSEDEAAIGVICMYAEQKRLLRQKFNQEI
WSDGFKDIVKIDTVDSYQGKENRIIILSLTRSDKQHSPGFLRAPNRINVA
MSRAMDRLLIVGNADIWKGNNKELPLGSVVRYMTERGQEAGYTFISAKQD
GKQK
>HCH_06671 AraC-type DNA-binding domain-containing protein
MTVSSPLKVLRLDIGADQSRDLHARSEGQLYWLEQGAIFCRSDRFHWLTA
PRQLTWIPPGCQHDARPLSTVRGVLLHLREDLTFVLPKEPVALEPHRLLE
ATLLRLIELCPESDWLERHEHLLQVFLWEAREATPLRQRLPMPHDPRLLR
MANSLWRAPESNPGLDALALEYGFSRRTLTRKFMQETGASLSQWTQHAKL
LRALELLAANESVSSAAFGVGYQSVSTFCAVFKQVFGMSPGDYKRRFLNR
>HCH_01851 AraC-type DNA-binding domain-containing protein
MTRAIAIAAREPRELIENRVSFAGPNSELSVYDTYLPAQRVGLSADELLY
CGMISGRKILHGRDDYTAEFLPQESFVMAPGETISIDFPDAELDRPTSCL
TVEISRTRVDSICSHMNKVAPLHKDFEEWRYRTETLIHTPHTQATQALLE
RMIATFSENGPDRDILIDLGVSELVVRMLRQQTRAFLLGACERQPDINGL
AAALSHIQKHITQPLDIDQLCKIACMSRSRFFTEFKSHFGCTPAEFQQQL
RLQRAGERLRQGESVTRVCFDLGYRNLSHFSRRFQRQYGRSPSQYQKQLT
FT
>HCH_01170 ABC-type sugar transport system, periplasmic component
MSKRPTITDLAQAAGVSPATVDRVLNNRSKVREATAQRVLLAAEDIGYHA
SGLLKKRFQESKPHKTIALLLQRSAEAFYQTLGVALVNAASRQRDYQIQT
QLIFMDEVSPAYISSQLQQAAETSDAIALVALDHHSINQVIEQLANQGIP
VITLLSQLSTQACAGHLGLDSRKAGRSAAWAISRLAKTEGEVGILLGSHR
YLNQEISEISFISYFRELGRSFRLLDPILNLDDDRLAAEATAQLLASHPD
LTALYSAGGGMAGMISALRSEAADRKLIVICNELTPSTRDALNEGLVDMV
IATPVERLAAEAIALFVRAFNDKGEPRFAPVLLAPELHIRENI
>HCH_06233 putative transcriptional regulator
MKELDLDAGNSGLKWRLVESGRVIDRGIIIYGANAQKWSMPTKGACRAFV
SSVSSKEVDDAIREVLKDIKDVFWAKTASSYGSLVNAYADYASLGVDRWL
ALIAAYSKYPEDLCVIDCGTAVTVDYVDKFGVHKGGYIAPGGALMLKSLN
VNTAALKGTYGYDSELIPGSSTRECIERGVYYMQKAFVLSVARRCAESRI
VCTGGGVKALLGNDEAYTYVEDLVLDGLRIVANAVPVN
>HCH_01327 predicted transcriptional regulator
MPDRKNMDIGEVVKLSGLPASTLRFYEEKQLIQPIGRHGLRRVYDAGDLR
>HCH_04705 Superfamily II DNA and RNA helicase
MSFASLGLSAPILDAISEQGYASPSPIQLQAIPVVLEGKDVMAAAQTGTG
KTAAFTLPILERLSKGDRARSNQARALILTPTRELAAQVGECVSIYSSKL
PLRSTVVFGGVKINPQMMRLRRGVDVIVATPGRLLDLYNQNAVRFQDLEV
LVLDEADRMLDMGFIHDIRKILDILPKRRQNLMFSATFSNDIRKLAKELV
NNPVEISVSPPNTTAKTVKQWIHPVDKKQKSALLTQLIRDNNWDQALVFS
RTKHGANRLTRQLCAKGINAAAIHGDKSQNARTKALADFKTGSVQILVAT
DIAARGIDIDQLPQVVNFDLPQVAEDYVHRIGRTGRAGAEGQAVSLVSAD
EFKLLADIERLIQKRLPREEIEGFEPEQRLPESRLPTQPVKARKPKKPKA
AKSGEQREQDRKGEKKGPRQDGAARNNANAPRRQRRRGTGAGRPAPRKEA
KSN
>HCH_06966 acoR, Transcriptional activator of acetoin/glycerol metabolism
MDSDENKKASVFAAEGTTRSHKELIEDSWRRCKEYGLTHNSVPQYGVLGR
GGVSALLEEHQLLVNTTQKEVLPYYDHILSNSNCLIVLADRRGHVLNTWG
EQRFTPLECAHGLVVGNRWTEMGAGTNAIGTAIATGAAVQVGRDEHFLRA
NRFMVGSAAPIFNTQKEMVGVLDISSDAYLPQDHTLGMVKLMTLSVENRL
IHNAFQREHLLITFNTNIAALESPWSGLVVIDVEGRIISANRRAEVMLAH
DLALANIEDIFNCKLRELRHHPEGMPMEVSALGKYRMHLMIKRPPQAAII
APDYRKKEKPAPVIVEEELPDDVIPFHELEHGDERVARMAKQANRIMEKD
IPILIHGETGSGKEIFVRSLHYHSSRKAFPLVAVNCAAIPAELVESELFG
YEKGAFTGASNKGSIGLIRKAHRGTLFLDEIGEMPLKVQARLLRVLQERC
VTPLGSTETFPVDIKLISATNRVLKEEVKRGAFREDLYYRISGLNLELPP
LRERADKAKLIEYVHGRLTRSAGETYHPLSLDVLNMLVDHPWPGNVRQLI
SILSVALAMADGDPIEDWHIPDDFYDDLNGLGLAEHNGDGLSEGMDYVDH
HNDGPILRNPKEELEAKIVRLYREYGGNVSQTAKAAGVSRNTVYKYIR
>HCH_00292 algR, alginate biosynthesis regulatory protein AlgR-like protein
MTKVIIVDDEPLARERLKRLLLDTHYEVCAEASGGDEALERIRLHSPDIV
LLDIRMPGKDGLEVAAELAQHPQPPAVIFTTAYDEYAIQAFRVRAQDYLL
KPIRREDLMRALQNVTQVNRAQLQSLKQEINGQDEAPAVVVCRSSRGMER
IKISDILYLQAEHKYVTVFHAQGETLSDQPLKELEQALHPHFLRIHRNTL
INRHYIEILQRRHDGHYEVRLRGVREALPVSRRLVTEVKQFLAQPT
>HCH_01790 algU, RNA polymerase sigma factor AlgU
MSVQVLTALESTRGRAELLDNKENMSAPNKTTDQQLVERVQRGDKRAFDM
LVVKYQSKVMAIIARYIRDHHEVMDVAQEAFIKAYKALANFRGESAFYTW
LYRIAINAAKNHLMAQGRRPPGEDVDADDAVLYEGGSALKDIDSPERQVH
RDQVKQAIFQALDELPEDLRSALTLREFDGLSYEEIAEIMQCPVGTVRSR
IFRARDAVDARIAPMLEQKMRA
>HCH_03681 cadR, Cd(II)/Pb(II)-responsive transcriptional regulator
MRISVLAKATNCDAETVRYYEKIGLLPAPPRSASGYREYGRSHLERLNFI
RHCRSLDMSLNEIKSLLYFRDHPSLDCGEVNDLVDSHLLALEQKISDLEK
LREQLQSLRDKCRIHNRASECGILTGLNHDPAEGECPCHGETPHS
>HCH_05171 fliA, flagellar biosynthesis sigma factor FliA
MVAAPDISSNTHENVFVEIIRFIAGLARKFMSLANTYMMYSETRAERADT
LVRQYAPLVKRIAHHLIARLPASVQVEDLIQAGMIGLLEAAQKYDAGKGA
KFETYAGIRIRGAMVDEIRKGDWVPRSVHRNARNIAEAIHTIEARTGRDA
SDAEVAAELGVPLEQYHASLRDASSGKLFSLEELGFHGEGGSDDETLTAD
NPLSDIEQNAFLEKLSAAIDGLPEREKLVLSLYYDEELNLKEIGQVLSVS
ESRVSQIHSQATLRLRSRLSDWKNS
>HCH_01229 greA, Transcription elongation factor
MSKIPMTKAGEQALREELNRLKTVDRPRVITAIAEAREHGDLKENAEYHA
AREQQSFIEGRIAEIESKLSMSQIIDLTSIENTGKVIFGVTVNIINLDTD
DVSSYQIVGDDEADIKKGKISVSSPIARALIGKTVGDVVVVQVPSGMVEY
EIDGVQHL
>HCH_00585 greB, transcription elongation factor GreB
MSRYRPPGPPKARYITSEGERVLREELQYLWKVKRPEVTKAVSEAAAMGD
RSENAEYIYGKKQLREIDRRVRYLTKRLDELKVVDRPPEDQSRVYFGAWV
TLEDEEGDEHRYRIVGSDEIGAQKGYISVDSPMAKALLKKQVDDEAIVTT
PSGRKSYFVIEIEYCGA
>HCH_04168 hutC, histidine utilization repressor
MSSKPRFQQVKDFIVSGIESQRYVVGGRIPTEMQLAQQFQVSRMTVHKAI
RDLVNEGRLVRYQGQGTFVNDAKPTSSFQDIRNIAEEIKARGHEYSARIV
KQEQLRASSNVAVQLGIKTGVPVFHTLIVHLEDGVPVQLEDRYINPLLAP
EYLDQDFSVVTPNQYLTSVYPVSDVEHIIEAVLADPDQCKLLEININEPC
LRIYRRTWSRQQLVSSAHLTYPGSRYRLQSDSHFS
>HCH_00076 hypB, hydrogenase accessory protein HypB
MCGVCGCGDEHASLNGSPLAPAHAHASGLSQTRMVLIEQDVMNKNNQFAM
ANRDLLGVHQVLTLNLVSSPGAGKTTLLTRTIAELRESLHIAVIEGDQQT
EFDAERIRATGVEAVQINTGKGCHLDAHMVGHALERLPLPELDILFIENV
GNLVCPAGFDLGEAAKVAILSVTEGEDKPLKYPDIFHASQLMLINKIDLA
PYVDFDVDKAQEYARRVNPNMEIIHLSAKTGAGMEQWRQWLQQRLPGKS
>HCH_04462 iscR, iron-sulfur cluster assembly transcription factor IscR
MRLTTKGRYAVTAMLDLALHGNSGPVSLADISARQGISLSYLEQLFAKLR
RSRLVSSVRGPGGGYKLARPLGETAVAEIIEAVNESIDATRCGRKGDCQG
GEICLTHHLWQDLSERIHDYLSSISLEELVASRAVQEIAERQTERKRAGE
AGISLVDIG
>HCH_02068 lexA, LexA repressor
MIKLTKRQEQVLQLIREHIEETGYPPTRAEISNRLGFRSANAAEEHLKAL
AKKGAIEMVPGASRGIRLPASETQNQGIPIVGQVAAGYPILAQENIEEYC
ELPPSFFTPSADYFLRVKGMSMKDVGILDGDLLAVHRTTDIHNGQIVVAR
IGDEVTVKRFQRQKNKVLLLPENEEFEPIEVNLSQQPLDIEGLGVGVIRR
>HCH_00481 malT, maltose regulon positive regulatory protein MalT
MTTTIKPESLTLIKAKILPPPRPAHLLEREKFDDLLHEIDPVNLILVQAP
AGYGKTTMIDDRLGALGANAAWFRLDAQDNLSEQFAFYVAHSLNEATRGA
CPETLRTLNQQGYPTLQTFLTDLLSELPLEGDPLHLVLDDYHLISNPEIH
SGVMFLLRHLPPYITLVLLSRTTPPIGVAQLRMQGRMLEITAKDLSFSAD
EAQVYFEQRLRFEVSRESVERANRRVEGWVSALQLLAATASTGVEFNEYV
EQLHSGNHYIFDYFDELTRTSIDNEQRLFLLRTSVLERFNALMVMRLAQQ
QDGQFLLNSLLNLGLFIVPLDSSGLWFRYHPLFAAYLRHMQVCVLPDETA
QLHQRASDAWREMGFFEDAARHAVLAKDQQRIKDILLSCGRDFFTEGQFN
LLQRCFDALNKEVIADHPILTLLRAWVAQGQYQWSEVESWLRAAEQHLKT
HCSEEEWEAINGEFNAVRAQVAMNVGDAERAQTFAKSALAHDPVYLPTSR
TAASSVIGESLFVQGHLKEAITRMQDTEQLALAEHAHQNVIWALCQQSEI
SVAQGYLQKAYNIQEKALQYAEDHSLERLPILEFLYRIRSQIMWEWHHLE
SAERCALKGIEILESQGERWFIQSYVMLAKIAQARGRQSLCADYVQKIHK
MLASGEYHIDWTANAHAAMLSYWDAVRDKESIQRWLTAAPEPTPEQATNH
FTQCNIRNWARAYVSLGDFDKALPLLEGIQSMAEQFGLKTDINRNHIHLS
QLYWLNEQREDALRHMAIALKLASTTGAVGSFLRIGKVLINILKALISEE
QLDEMEKQRAERLIQLAQQQRDFSRAIRISLDEAIIQDIIDRPDVPELIR
TSPLTRREWQVLSLIHAGLSNDQIAEHMKVAPTTVKTHIRSLYQKQNITH
RSEAINLARDLLSKIQGE
>HCH_02683 mfd, transcription-repair coupling factor
MTERRQLPSNSTTIKYWPQAVGQSDAYILAQALKEQKRLLVVITPDMPSA
DQLESAVKFFLGDAKKNESTPPILTLPDWETLPYDTFSPHQDIISQRIQT
LHNLPTCASGLLIVPLSTIMVRLAPKEFVQRSTLILRKGQPLRIDSYRSE
LEQAGYRCVDTVYEHGEFAVRGSILDIFPMGSKAPFRIDLFDEEVETLRQ
FDPETQRSASQVDEISLLPAHEFPLNEASIQLFKDNFYEKFPGASRNIPL
LQDISRGIATPGLEYYLTLFFTETASLLDYVARDACFALYDGLHEKALHF
WKDLEQRYEDLRHDIQRPILPPADIYLRVEELFEGLKQFPRAQFSAKSEE
SDKPFAPLPHLALDAKKENPLQAIDCAQQDTGYKIILCAESAGRQQALMD
TFKEHGRPLTLLESWEACLNSNERWNITVAELAKGFADNENQILVVAEAD
LYEGRVLQRRRRKRAQESPENIIQNLTELKLNAPVVHIDHGIGRYKGLQS
LEVDGQKQEFLVLEYANEAKLYVPVSSLHLISRYAGLDDKLAPINKLGTD
RWSAAKRQAAEKIKDSAAELLEIYAKRELHTGYACPPPDEHYRAFSAAFP
FEETPDQATAINAVLQDMMKPRPMDRLVCGDVGFGKTEVAMRAAFLAAHA
GRQVAILTPTTLLAQQHFQSFQDRFADTAINIELISRFRSAGDIEKVKDK
LSDGKVDILVGTHKLLQKDIQFKNLGLLIIDEEHRFGVQQKEKVKSLRAN
IDILTLTATPIPRTLNLSFQGVRDLSIIATPPEKRLSVKTFVQEHNNSII
KEAVLREILRGGQVFFLHNEVNTINKAASELQEMVPDARVAVAHGQMRER
ELERVMSDFYHKRFNVLMCTTIIETGIDIPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPRNLTEDAKKRLDAISSAQDLGAGFTLATH
DLEIRGAGELLGEEQSGHIQNIGFTLYLQLLDAAVKAMREGKELDLTQPI
DQGCEVNLRLPALIPDDYLPDVHNRLILYKRIASAKDEDALQSMQIEMID
RFGLLPDATKNLFRQAHLKLTADRLGMARIDIGAKGGVIEFNAKTTIEPI
KLVNLIQREPKHYKLDGGSKLRVTRSLEDKEDRMQFVEKLLKSFAPARA
>HCH_01238 nusA, N utilization substance protein A
MNKEILLVVEAVSNEKGVDKDVIFEAIELALATATKKRYEDEEADIRVDI
DRKTGEYQAFRRWLVVDNDAVPALGTELTLEEVHESGLDLKPGDTHEEEV
EAVAFGRIGAQAAKQIIVQKVREAERTKIVDSYREKVGDLVNGVVKKVTR
DNIIVDLGANAEALLPKDQLISRETYRVGDRVRALLLDIRMDNRGPQLIL
SRACSQMLIELFRIEVPEIAEEVIEIKAAARDPGSRAKIAVKTNDGRIDP
VGACVGMRGSRVQAVSSELGNERIDIVLWDDNPAQLVINAMAPAEVASII
MDEDSHTMQVAVSEDNLAMAIGRSGQNVKLASEMTGWEINVLTEEQAGQQ
QEEEFRRYVDCFIDQLGVEEDLAEVLASEGFTSLEEVAYVPMEEMLAIDD
FDEDLVTELRKRAKNVLINQALASEEQLEKAEPAEDLLNMEGMDRHLAFV
LASKGIVTMEDLAEQSVDDLLDIDEVDEERAAQLIMTARKPWFEEQQ
>HCH_05953 nusB, transcription antitermination factor NusB
MSKAMEKRRAARKLALQALYQWRVAGASISQIEAEFAVDNDLQQVDRDLF
KAVLYGVPSSVSELDALLQPFVDRKLTDVDPVELSLIRMGAFELRSRIEV
PYRVVINEAVELAKQFGGTDGHKFVNSVLDKLAPQLRQAEVAAAKSKKK
>HCH_06229 nusG, transcription termination/antitermination factor NusG
MSKRWFVVQAYSGFEKHVMRSLKERIVLKGMEDQFGEILVPTEEVVEMKE
GKKRKSERKFYPGYVLVQMEMNDDTWHLVKSTTRVLGFIGGTPDKPAPIS
DKEAEAILRRVESGADKPKPKTLFEAGEVVRVIDGPFADFNGVVEEVDYE
KSRVKVAVLIFGRSTPVDLEFSQVEKD
>HCH_00771 phoB, Phosphate regulon transcriptional regulatory protein phoB
MASKQVLIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDL
ILLDWMLPGVSGIEFARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGA
DDYITKPFSPRELVARLKAVLRRTAVQGMETPIEVEGLRLDPVCHRVTAK
GDALNMGPTEYKLLQFFMTHQERVYTRGQLLDQVWGGNVYVEERTVDVHI
RRLRKALEPSHHHLVQTVRGTGYRFSTRAP
>HCH_05443 pspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription
MGIFSRFGDIINANLTALLDRAEDPAKMIRMMIQEMEETLIEVRTTSARV
IADRKELERRMDYLRQESENWEGKARLALSKNREDLARAALAEKSAIEEN
LQIAGKELKAIEEQLEVLHEEIAQLQQKLDDAKAKQKSLVVREQTARSRM
DIRRSSNRDKLEEAFNKFEAYERKMDDLEAQVESYDLGRTGSLMDEFSEL
ERNDKVEQALADLKERMNADSGSKN
>HCH_05445 pspC, phage shock protein pspC
MNEANKQNGYNRNLYRDPDAGWIAGVCAGLAESYGQPVWLARIIMLSVFI
FSGSLGVLLYIAGVVLLAKRPRNSYAPSHGRPLFDYGESASDRARQLKER
MRALEMRLQSMERYVTSNRFNVNKEFKNL
>HCH_05441 pspF, psp operon transcription activator PspF (sigma 54-dependent)
MDGRRQTLIGSSEELHRVLQQVSQVAPLNRPVLIIGERGTGKELIAERLH
YLSSRWEQPYLQVNCAAMSETLLESELFGHDAGAFTGATRGRAGLFERAD
GGTLFLDELATASMQVQEKLLRVIEYGRFERLGGNKTLHVDVRVVAATNA
DLPTMAAGGRFRGDLLDRLAFDVISLPPLRFRKDDIRELAEHFALKMSIE
LGYDWFAGFAPEAMTQLMNYHWPGNVRELKNVVERSVYRHGAQEQVLREV
VIDPFDSPWRPSGLVEEAKPVEPKTMQPEPDSIAEAESLDLRTRMAQFEQ
RLIAEALAANQFHQKRAADALGLTYHQLRAALRKYPQLLDGDNASKS
>HCH_06309 recG, ATP-dependent DNA helicase RecG
MSIEQPLTELKGVGPALAEKLAKLGLHTVQDLLFHLPLRYEDRTRVTPVA
QVRVGMPAQVEATVVDSRVELGRKRSLLVRVRDDSGEIGLRFYYFTAQQK
NRFSPGRKFLCYGEARLGRSGLEMYHPETTQVDELKPAEMEQRLTPIYPT
TEGLMQKRLRDLCQQALTLMRRYPIKDWLPQELRSHYQMPELNAALDYLH
HPPVGANVTALAESRHPNQQRLVAEELLAHHLSLLQLRQEVQSQPAPALR
AGVLQQRFIEQLPFALTGAQKRVIGEIEQDVRAMVPMLRLVQGDVGSGKT
VVAAASALCAIEAGHQAALMAPTEILSEQHYKTLSQWLEPLGVSVVWLNG
KLKASERQKVLDAISSGAAQLAIGTHALFQDQVEFARLGLAIIDEQHRFG
VHQRLSLREKGARSGQAPHQLIMTATPIPRTLAMSAYADLDTSVIDELPP
GRTPVVTAVIPDIKRDDVVERVRKVCLEGRQAYWVCTLIEESEVLQCQAA
EATAANLAEALPDLRVGLVHGRMKAAEKTAVMDDFKHNRLHLLVATTVIE
VGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGSHESYCVLMYHPPLSL
AGKARMQVMRDSNDGFVIAEKDLEIRGPGEVLGTRQTGLIQFRIADLQRD
RQWLPVVKEMALSVIDQPDVTEALIRRWIGHRALYGKV
>HCH_01807 relA, GTP pyrophosphokinase
MVKVREDYPLAQDGSVDINGWIDRLQQQVELEDVASFRRACLLAKEIESE
AVRAGNLWSEGSSSFLTGLEMTQILSELQLDSPSLIAAVLYRAVREGKLS
LVRVNEEFGEEVSKLIEGVSQMAAISSLRHPIQGSVLGQTQTQVDNIRRM
LVTMIDDVRVALIKLAERTCAIRDVKNAGSDKRHRVAREVFDIYAPLAHR
LGIGYLKWELEDLSFRYLHETAYKKIAKLLDERRMDRQKFIEEALSALRQ
ELEASGIKAELSGRAKHIYSIWRKMHRKGIDFSQVYDIRAIRILVPSIRD
CYSALGVVHALWRHIPHEFDDYIANPKQNGYQSLHTAVVGPSGKIMEVQI
RTQKMHEEAELGVCAHWLYKGTDTQQKSHGYEQKIAWLRQVLEWQDELGS
KTSELVDQWRNDIVSDRIYVFTPDGHVIDLPAGSTPIDFAYKVHTEIGHA
CRGAKIHGRIVPLNYKLKTGDQVQILTSNQARPSRDWLNSDLGYANTSRA
RAKITHWFKLQDRDQNVEEGRDILQGVLKRLSLEQLDFDDLAQKVNYPSA
EDMFAAIGAGDLKPMQVAHTAQNMLEPRDEQLTLHLHAAQESAKSSDVHI
RGVGNLMTQMANCCKPAPGDPIVGYITIGRGVSIHRQDCINALQLQTVEP
NRMIEVSWGDTEYTYPIDVVIEAYDRPGLLRDITLLLANEKINVTAALTN
TDKKQSTADIRLTVEVTSIDVLGRMFDRIRRLPNIIDARRAKPGEG
>HCH_02291 rhlB, ATP-dependent RNA helicase
MTVSDQTTDNAVLFSSLNLHPKLEQAIRDLNFERCTPIQGQTLPHTLQGA
DLIGQAQTGTGKTAAFLITILQRLVSNPILTEERFSSEPRALVVAPTREL
ALQIEKDACALAKHLKLNIISVIGGTQLDRQRRKLRDEAVDLLIATPGRL
LDHLTSADIYLDQVEVLVLDEADRMLDMGFIPDVKRIVRATPRERQTLLF
SATFSEDIKNLARRWTEEPVEVMLAVDHLPAKTVDQRVYMVESSAKRKLL
VNLLKDSETRRVIVFCNRRDETRSLSEALNRHSIKNELISGELPQQKRLK
TLERFRRGDFRVLVATDVAGRGLHIDGVTHVVNYNLPDDPEDYVHRIGRT
GRAGATGVSISFACEDDSFLIPELEKYLGHELALIHPDDDLLQ
>HCH_00285 rho, transcription termination factor Rho
MNLTELKKKPVPELLTIAEEMGLENMARSRKQDVIFSILKKHAKSGEDIY
GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGK
IRPPKDGERYFALLKVNEINFDKPENARNKILFENLTPLFPQERLRLEAG
NGSTEDLSARILDLVAPIGKGQRGLIVSPPKAGKTLLMQNIAQSITRNNP
ETHLMVLLIDERPEEVTEMQRTVRGEVVASTFDEPPARHVQVAEMVIEKA
KRLVEHKKDVVILLDSITRLARAYNTIIPSSGKVLTGGVDAHALERPKRF
FGAARNVEEGGSLTIVATALIDTGSKMDEVIYEEFKGTGNLEVHLDRRIS
EKRVFPAINIRRSGTRREELLMSEEELQRVWILRKLLHSMEDDIAAVEFL
LDKLKDTKTNDEFFQAMKKR
>HCH_01800 rnc, ribonuclease III
MTAKLERLQRALGYTFKEPALLTLALTHRSFGGRNNERLEFLGDSVLNFI
IADYLFGRFEEAREGQLSRLRARMVKGVTLAEIAREFDLGEYLRLGSGEM
KSGGFRRESILADALESIIGAIYLDAGFEVCADRVLNWFEARLQKLNLKD
TQKDSKTRLQEYLQARQLNLPRYEVISVQGEAHAQTFHVRCEIDGLSDAT
EGTGSSRRVAEQKAAKQALLALGVDQ
>HCH_01709 rnr1, ribonuclease R
MGKKKKSSLDPFAEREAARYEHPTASREFILAFLEERGAPATIEEIASSF
NVVQPEPYEGLRRRLIAMCRDGQLVCNRRGAYGLPKKMNLIRGRVQGHKD
GYGFVIPEEGGSDLYLSSRQMKRVFDGDIVLVREEGREFKGKREGVIVEV
VERRTFEAVGRIYMESGVAFVVPDNPRITQDILVPEHALNGAKHGQYVTL
EIVRQPDVRVNPMGHVKEVLGEHMAPGMEIDVALRTYSIPFRWPEEVDAE
AAKFKSKLSARDKAHRVDIRHLPLVTIDGEDARDFDDAVYCEAKKSGGWR
LYVAIADVSHYVKPQTALDKEAFQRGNSVYFPNRVVPMLPEVLSNGLCSL
NPDVERLCMVCEMTISQKGKLSGYKFYEGLMFSKARLTYTKVGAYIDDPD
SAEGRAFAERYADLAPHIRELHNLYLALRQAREERGAIDFETVETRILFD
SDRKIDKIVPVVRNDAHKLIEECMLCANVATAKLLEKYEIPSLFRVHEGP
TMERLENLRAFLGELSLSLGGGSNPKPSDYQALTETIRGRPDSATLQTVM
LRSLSQAVYQPENKGHFGLGYEAYTHFTSPIRRYPDLLVHRAIRDLIRSE
RPCKNVQRVAGAPALPKNARYNYDMQALLVLGEQCSMTERRADEATRDVM
SWLKCEYLTQHVGEKFDGIVAAVTAFGLFVELKDLYVEGLVHVSSLKSDY
YQFDAVKHRLVGERTGVTHRLGDEVRVQVVRVGLEDRKIDLEMIGEPRRS
APGKKNKRKEILAQWNEEWKREKKAGGGQPAKGAKGGKRSEASGPLRKPQ
KKGRRKRS
>HCH_05573 rnr2, ribonuclease R
MSTASITAISAHDAQKYDNPIPNREFILNVLNQQGGRLNREQLAERLKLS
SEQDLEALRRRLRAMERDGQIMFDRGDYTPIKSSELICGRVIGRREGHGF
LARDEGGDDLVLNKSQMRKALDGDRVQVRISGVDHRGRQEAQIVSVLERN
TTQLVGRLKHESGVYTLVPDNDRICNEIIITPESVGDAADGQYVVVNIVK
YARNRSPMLTDVAEVLGDAMAPGMEIDVAIRNHDIPFIWPNDAVQAAKQL
GAAVSDEDKLHRYDLRSVPLVTIDGEDSMDFDDALFCQPRSNGGWRLFVA
IADVSHYVTPGSPLDLEAQKRGTSVYFPGRVEPMLPEALSNGLCSLNPNV
DRLAMICEMFIDSAGNLGKFQFYEGIMRSHARLTYTEVGALLEQPESRLG
QQVQQRYSDLVPHLQALHQLYGALRQARSKRGAIDFETTESKFQFDDQRK
IRRIDPVVRNDAHKLVEECMLCANVATARFLQKLKLPALYRVHQGPLQKK
LENLRAFLGELGLSLGGGKQPTSTHYRRLLNSISERPDAEVIQSIMLRSL
SQAEYSPDNQGHFGLAYSAYAHFTSPIRRYPDLLTHRAIRSVIRGNESGG
KFKRAFKSITGLGADPVRRVDSAASLTPSQSYPYKTEDMVKLGEQCSLAS
RRADMASWDVEAWLKCEYMQDRIGDTFAGTVCGVTNFGLFVELKGVMVEG
LIHVSALEGDYYQFDAAKQRLTGERSKKSYGLGDAIQVRVVRVDLEQRKI
ELEMDGRGQAPGNGKNASGSRRRSNDKSPGRRSGKPKSSGRYANKKPAVA
ESAH
>HCH_06193 rpoA, DNA-directed RNA polymerase, alpha subunit
MQRSLNEFLTPRTIEVNQINATHAKVTLEPLERGFGHTLGSALRRILLSS
MPGCAVVEVEIDGVLHEYSTVEGVQEDVIEILLNLKNLAIKMHNRDEATL
SLNKKGAGPVLASDIQLDHDVEIANPDMVICNLNSNGDVKMKLKVARGRG
YEPADQRNSADDETRAIGRLQLDSSFSPVLRVAYNVESARVEQRTDLDKL
VIDLETNGTIDPEEAIRRAATILQQQLAVFVDFDQQNEPEKVEEQEEIDP
ILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASIRGDDRVLGG
>HCH_06224 rpoB, DNA-directed RNA polymerase, beta subunit
MTYSYTEKKRIRKDFGKLPAVMDVPYLLSIQLDSYHDFLQQDVAIEDRQE
VGLHAAFKSVFPIVSFSGNAALEYVSYRLGQPVFDVAECQLRGVTYAAPL
RVKVRLIIYDKESSTKAIKDIKEQEVYMGEVPLMTENGTFVINGTERVIV
SQLHRSPGVFFDHDKGKTHSSGKLLYSARIIPYRGSWLDFEFDPKDCVFV
RIDRRRKLPATILLRALGYAADEMLEMFFENSLFEVEGGEYFLDLVPSRL
RGDIAIFEIKDDEGNLIVEEGRRVTARHIRQMEKAGLKRLRVPSSYLLGK
VTATNIADPSTGEVIVECNTEITDDAIEKIEKAGIKRIETLYTNDLDCGP
FVSDTLRIDATRSQLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERY
DLSAVGRMKFNRRLGREETEGLGVLSHSDIIDVLRTLIDIRNGKGVVDDI
DHLGNRRVRSVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINA
KPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGF
EVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARTNTYGFLESPYRKVV
DGLVTDDIEYLSAIEESDYVIAQASAAVDENGRLIDELVTVRHKNEFTVM
PPEKVTLMDVSPRQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLKA
EKPLVGTGMERYVAQDSGVCVVARRGGVVVSVDAARIVVRVSDDETEAGD
AGVDIYNLTKYQRSNQNTCINQRSLVMEGDEVARGDVLADGPSVDLGELA
LGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELTCVARDTKL
GPEEVTADIPNVGESALAKLDDSGIIYIGAEVEPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVSTGMRGTVIDVQVFTRDGVEKDQRA
KEIEQTELNKFRKDLNDEYKIVEGATFERLRSALLGQSVIGGPGLKKGDT
LTEVHFNAFEKEEWFKLNMADEQLNELLEKAEGQLQERRKSIEDRYEDKK
RKLQSGDDLAPGVLKIVKVYVAVKRRIQPGDKMAGRHGNKGVISAIKPVE
DMPYDEQGNPVDIVLNPLGVPSRMNVGQVLETHLGAAAKGLGDKINRMLA
EQKQAAEIRKFLHEIYNGIGGRNEDLDSLSDSEVLVLAANLKKGVPMATP
VFDGAKEKEIKEMLRLADMDDSGQVWLYDGRTGERFERQVTVGYMYMLKL
NHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAY
TLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLVKEIRSLGI
DIELEAN
>HCH_06223 rpoC, DNA-directed RNA polymerase, beta' subunit/160 kD subunit
MKDLLNLLKNQNYAHEFDSIRISLASPDMIRSWSFGEVKKPETINYRTFK
PERDGLFCAKIFGPIKDYECLCGKYKRLKHRGVICEKCGVEVAPANVRRE
RMGHIELASPVAHIWFLKSLPSRIGLLLDMTLRDIERVLYFESFIVIDPG
MTTLEKGQLLSDEQYYEALEEFGDEFDARMGAEAIQGLLADLELEDEIER
LREEIPNTNSETKIKKLSKRLKLMEAFAESGNHPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVIVVGPTLRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKM
VEREEAVVWDILDEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCTAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGDPII
VPSQDVVLGLYFMTRERINAKGEGMVFSDIKEVQRAYGAKKVDLQAKVKV
RIRDVVIDEDRNKTVTVSVLDTTVGRALLFDIFPEGLAFSLVNQNMTKKA
ISRLINACYRRVGLKETVIFADQIMYTGFYYATLSGASIGVNDFVIPDEK
AKIIDAAENEVKEIESQFASGLLTQGEKYNKVIDIWSRANDKVSKAMMDR
LGKEKVVNKDGKEVDQDSFNSVYIMADSGARGSAAQIRQLAGMRGLMAKP
DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTDLDCGTSEGLLVTPHIEGGDVVVPLGDRVLGRVTASDVYS
ASDNQNVVVPAGTLLDETTVETLEKAGVDEILVRSPITCETKYGVCASCY
GRDLARGHLVNVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDN
IQVKHGGTVRLHNLKHIERKNGNLVVVSRSSALAIADEAGREREWYKLPY
GVELSVKQGQQVAAGEIVAKWDPHTHPIITEVGGKAIFVGVEEGITVKTQ
TDEITGLSNIEVMDPKDRPASGKDIRPMLQLLDANGKEMKFPGTDTPVQY
FLPPNSLFSLKNGDTIEVGDVIARIPQESSKTRDITGGLPRVADLFEARK
PKEPSILAEISGIVSFGKETKGKKRLVITPTDNTDPFEILIPKWRQLNVF
EGESVEKGEVISDGPSNPHDILRLLGVGELAKYIINEIQDVYRLQGVVIN
DKHIEVIVRQMIRKVDVLSSGDTTLIKGDQVELVKLLEENEKAGEEAKMP
ARYERVLLGITKASLATESFISAASFQETTRVLTEAAVTGKQDHLRGLKE
NVVVGRLIPAGTGSAYHQERRRKRMQKEGGVSAADVVQALSAELNK
>HCH_06274 rpoD, RNA polymerase sigma-70 factor RpoD
MSGNSRKSRLKELIARGKEQGYLTYAEVNDHLPEDIADPDQVEDIIRMIN
DMGIMVCEEAPDADTLLITDGDSTDESVAAEAAAALASVENDVGRTTDPV
RMYMREMGTVELLTREGEIQIAKRIEEGLRDVMATLVYYPGTVSNILAAF
DATQGEDGGRVSDVITGFLDPVEDGVIPEANDEIESDDVDEDEDEDEEAE
ESSGKDDAKAKKDLDEDEDEESEGDDNSDSDDDNDSGPDPEIARGRFAEL
REAFNTLNAAIDKHGRASREAQECFDEVSRIFAPFKLAQKQFDEIINTIR
VTNDSVRKYEREILNICTRDCKMPRKNFIKMFPGNETNLEWVKGLGARSE
EWAKTAQTKEEEITRLQRRIVSIQNEVDLPVADIKEIHRRISIGEAKARR
AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRHMLQEM
GREATPEELAKKMDMPEDKVRKVLKIAKEPISMETPIGDDEDSHLGDFIE
DSHAESPIDSATTEGLKESTRRVLAGLTAREAKVLRMRFGIEMNTDHTLE
EVGKQFDVTRERIRQIEAKALRKLRHPSRSDHLRSFIDD
>HCH_00575 rpoH, RNA polymerase sigma-32 factor RpoH
MGTSLRPVEMLAPVGNLEGYVHAVNSIPVLSAEEERELAERFHQNEDLYA
ARQLVMAHLRFVVHIAKSYSGYGLSQADLVQEGNIGLMKAVKRFNPEFGV
RLVSFAVHWIKAEIHEFILRNWRIVKVATTKAQRKLFFNLRSAKKRLAWL
TNDEAKAVAEDLGVDTHVVREMESRLAGQDTSFDAGADEDDETAFKAPAN
YLEDRRYDPAMMLENENWEEDSNSRLHDALTQLDERSKDIIQKRWLAENK
ATLHELADEYGVSAERIRQLEKNAMKKVKLMLEA
>HCH_05320 rpoN, RNA polymerase sigma-54 factor RpoN
MTPQLQQAIKLLQLSTLDLQQEIQQALESNPMLEVSEEEESPNHVQNDTI
SDMLANNSSKERAQESGMDEGGFAEEDNWSDSIPNDLPVDTAWDDVFQSG
SSSYSGGEDDEYDFESRNSKGETLQDHLLWQLNLTPMSDIDRMIAVAIID
AVNPDGYLSLTPDEIHSGLQTEGEEEIELDEVRAVLKRVQQFDPAGVATC
NLQDCLLSQLNQLPKDTPWLGQAKLVVSHYINLLGNRDYAQLMRRSRLKE
DDLREVLKLIQSLNPRPGEGIQESNTEYVVPDVIVKKNNGRWLVELNPEI
APKIRINPGYAGLVRRADNSSDNTYLRDQLQEARWFIKSLQSRNETLLKV
ASQIVEHQQGFLEYGEEAMKPLVLHDIAEAVEMHESTISRVTTQKYMHTP
RGVFELKYFFSSHVSTDTGGECSSTAIRAIIKKLVAAESPKKPLSDSKIA
ALLGDQGINVARRTIAKYREALSIPPSNERKRLI
>HCH_01877 rpoS, nonessential primary sigma factor
MAAERESYAEDLAYDVDIDLAEIEAEEFEDDESDVVVSIDQGRTGRFSLG
EGQSYRNLDATQIYLNEIGFSPLLTPEEEVHFARMARRGDEKGRKRMIES
NLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRASRELTQKLDHEPSAEE
IADLLEKPVKDVKRMLGLNERITSVDSPIGGNAEKSLLDTVADEASNDPA
ELLQDSDLKGCLDRWLDQLSDKQQEVIARRFGLRGYPMSTLEEVGQEIGL
TRERVRQIQVEALKRMRELLEKEGLTGDTLFK
>HCH_06314 rpoZ, DNA-directed RNA polymerase, omega subunit
MARVTVEDCLDHVDNRFELVMLASKRARQISQYGKDPKVEWENDKPTVVA
LREIAAGLITSEMLEQDED
>HCH_04737 scpB, segregation and condensation protein B
MTMAVNLTQLIEAMLFASDKPLTVDQLMTMFVEDFTPPQRDEIKAALKKL
TAVYADRAVNLVEVASGYRFQVRDEFAPWVGRLTEERPQRYSRAMLETLA
IIAYRQPITRGDIEDIRGVAVSSQIMKTLQEREWVRVVGHKDVPGRPALF
ATTRQFLDYFNLKTLDQLPPLAEVRSLEEIGRALELDLQANAADASETME
ADPPSSDATLH
>HCH_01441 soxR, redox-sensitive transcriptional activator SoxR
MAQLNARNAYKELSVGEVAKRSGVAVSTLHFYESKGLLKSNRNSGNQRRY
PRGVLRRVAIIKVAQRTGVPLSAIKEALSTLPEGRAPSAADWRRLSEQWK
QVLNDRIRKLTQLRDQLDECIGCGCLSMEDCPLRNPWDELAEQGPGPHLL
ERD
>HCH_04526 ureG, urease accessory protein UreG
MSTQTLRVGIGGPVGSGKTALVARLCQELRERFNIAVVTNDIYTEEDAQF
LIRHQALTEDRIIGVETGGCPHTAIREDASMNLAAIDTLTARHPGLDLVL
VESGGDNLSATFSPELSDLTLYVIDVSAGDKIPRKGGPGITKSDLLIINK
TDLAPIVGASLEVMDRDARKMRGDKPFIFSNMKTGEGLQDIIRFIIDQGM
LQAA