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# Thiomicrospira crunogena XCL-2, XCL-2

>Tcr_0323 conserved hypothetical protein
MQKLIWQMLLLWCFTSPLLAATSNTDWQNIKYIERAFIEVALKNEYRQTD
MRLIKWGVPIRYQFSYLGLPNNPFIENLAVTHLKQLHTITNHPINQATAG
QSANLQIIFTKDQHYQEAIHRYIQKESKALSRKSNCSASFQLNRQHEIIG
ANVVIPVDYVMSRGLLPACIVEETTQIMGLPNDSDWVFPSIANDKSQLDL
LTGLDYILLKLLYSPSLKPGMNLQQIRPILRSLLHQWKIAKLIQNASQKV
KESGLYPLIY
>Tcr_1827 Protein of unknown function DUF179
MEHLNSLEHHFLIAMPNLTESWFDKTVIYIVEDNEHGTMGLVINLEHNLT
VPELLDHFELTVEAPENYADQPVLMGGPVDLEHGFILHEPQGTWQKSLPL
RDNLAMTVSEDFLKAMADGTAPEKIVVCLGFSGWEKGQLNDEIQANNWLT
IPYNEALLFDVPNDQKWQVALNTLGISPESLSMDAGHD
>Tcr_0126 transcription termination factor Rho
MNLNDLKKMSAAALLEIAAEKGLENLARLKKQDIIFAILKAHAKSGEDIY
GEGVLEILPDGFGFLRSGDGSYLAGPDDLYVSPSQIRRFGLRKGDTIQGK
IRPPKDSERYFALLKVERINFEDPDVARKKIAFENLTPLHAQERLKMESG
NGSTEDITTRIIDIAAPFGKGQRGLIVAPPKSGKTVILQQIAQSIAENHP
EAYLIVLLIDERPEEVTEMQRTVKGEVISSTFDEPATRHVQVAEMVIEKA
KRLVEHKTDVVILLDSITRLARAYNTVVPSSGKILTGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRSIA
EKRTFPAINIEKSGTRKEELLTTPDELQNIWILRRFLQGLNNEVEAIETL
IDQLKVTKTNDELFTAMKR
>Tcr_0541 two component transcriptional regulator, winged helix family
MAEQCILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDC
VLLDWMLPGVSGISLAQRIRQNDQTATTPIIMLTARGEENDQVQGFESGA
DDYVVKPFSPRALVARVKALLRRQSPEKSTLDLIKIGPLKLDLSSYRFTV
NDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLLDQVWGENVVVEERTVDVH
IRRLRKLLDPVGAADYIQTVRGAGYRFSVD
>Tcr_1911 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase
MLTAQNDQENRLRALKNGASDYVMKPFNRHELLKRIEIQLENWQMKMMLK
EQNRLLEQKVQERTQALEDAHHEIIYRLGRASEYRDNETGNHVKRVSYFS
ELIALEAGLDKKEAHMIRIASPMHDVGKIGISDTIMMKPGKLTDEEYLEM
QRHVEIGGEILEGHDSNVLKTAYEIALTHHEKFDGKGYPKGLSGKDIPIS
GRIVAIADVFDALTSERPYKEAWPVEKAVHLIKSEKNKHFDPELVDCFLV
VLPEIIKIKEKYSDKDSI
>Tcr_1418 transcriptional regulator, AsnC family
MNTDTHIINLLIKNGRASFADIAREIGVSRAYVRQRVKKLVDEGMIEQFT
AVINPDKLGKSLSAFLDVKVAPQGIEQIARELAECPEVVSLYIMSDMKSL
HIHTLTNDTEALNRFSHEHLFSREHIIDVECKTLLTRVKNRRGGPRL
>Tcr_2013 hypothetical protein
MFYSTLDQDIIHSNPVATPFSFHYDEDVLVGRCLFKEGLSVYCPNKGTKA
FHYNRQQKLKDCYIQVDGVTVYICSLVVSQLQEIGGEYVYRLKIKSILPA
EKEKLLKIYDDKKIEIDNSDAS
>Tcr_0054 transcriptional regulator, LysR family
MTLNELKYCVELANEKHFRKASEKCFVSQPTLSIAIKKLEEELNVTLFER
RKNEVIVTPVGKQVVDLAKEIIQKTQTIKDISKDEQSQTTELKIGVIYTI
GPYLLPSLITKFHQKANNIRLSIEENYTHILSKKLQSGELDIIIVSLPFD
EPNIETFSVYDEEFVAAIPKNHSLSKMTEIALDDVKNETVLLLGAGHCFR
DQVLEAYPNLIHLHAKDNPLQKTLEGSSLETIRYMVASGAGITVLPCSAC
QNAEDLLVYRPLKEPKPKRTVVMAWRKSFPRQKVLQVFKDTLQSIQLPCT
ISPS
>Tcr_0518 GCN5-related N-acetyltransferase
MKTHNEQNLIFRKPTLDDGHAIYHLIKSSPPLDVNSSYLYFLQASHFADT
CIVVESDQKIVGFVSAYYRPDQPDSLFVWQVAVAETMRGVGLAKRMLLAL
IKNQKDNANLKELCCTISPSNKASQGLFKSFSKNYGLTLTVAPFITEAHF
GDEGHEAEELYVLKSDKQENLTHLIF
>Tcr_1401 Protein of unknown function DUF193
MHCPFCNAPDTKVIDSRLATEGAQVRRRRECMSCAERFTTYETAELTLPR
VIKSDGNRERFDDDKIRRGLIKALEKRPVASEAIDQVVNRIHKQLTAEGV
REIPSSQIGELLMEALKELDQVAYVRFASVYRSFQDVNAFREEIEKLVKA
TKSQ
>Tcr_0004 two component transcriptional regulator, winged helix family
MSKILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLII
LDLGLPKKSGLQVLEQIRADQNTTPVLILTARNTWQERVEGLKKGADDYL
GKPFHFEELLARIEVLLKRPTQPQARRLQFQEYELDLDCRELKVKEQRFA
LTKTEFALARLFLSHPNRVFSKDTLMQRLGDQHHERDSNLIEVYIRKLRQ
YMGKTAIETLRGQGYRFVGETSS
>Tcr_0195 response regulator receiver domain protein (CheY-like)
MKQANLLIVEDDLISLKLLQSFLKTENFTLYIANDGEEASHLIRQKPKDF
FHCIISDYLMPNKDGIQLLEELKEDPEYKKIPFILQTSANSEAEIQRGIN
AGAFYCLIKPITKETLISVVNAALKDFKNHREALTTIEGINTAFPLMKSG
HFQFQTLEEAKHLSNFIAFLTKDPDNIGIGYLELMINAVEHGNLGITYDE
KTQLINESRLHDEIAYRLSLPENQEKYVTVDLDHSDSDLTVTITDMGSGF
DYEKYLEFSIERAMDNHGRGIMMANKLSFDALAYSEGGRKVCCKTSQLKI
>Tcr_0106 serine/threonine protein kinase
MPQSDTAKNLIEQSDLSHVKLVGESPSIWTFQAIQTIEGYQKKQLIRVNT
DIRNHFAVQREKDLLHYLNQFEDDFPRFNEIRKQGFAYLSFFDYVGKKSL
KQKVKKSGTLSLKKAKQLLSNLIATLEHAHNVGFVHTQLSPENIIVGKSR
FYLVGWNNAIPSLSSFESELLLGDQQYCPPERLNGEYSDAGDIYNLGCTL
YFALTGKHIYRLNKVEHLFDQLYAHAFHTPRKLHSLPIFWRQLIVWMTQK
DPQKRPGLAELKQWVLDESVPKSIREQSFKPNKKFPKDCLTALADSHFLY
ALFKKASLYESSGDSERAFNLYESCAFREYTRAENNLGLMYEKGTVIHQS
YLKAMNMYHHAFKKGNPFAAYNLARLFENGLGAEQNLVQAFKLYQFSAKR
GHLAAQNKLGELYREGRGVEKDVVQARFWFGMAAHYGNPVARLNIKKSLA
SSHG
>Tcr_2188 hypothetical protein
MKWFWGLGIAFFLSGCASLNNQSTQKSSTVSLPLAAPEDAKKLTQPLFCG
QQDRAVAHLLTQGSYYASLTGQHRQTVCHKLRKLYQQDQGPWQAGWLLAY
SFTDKKSCISHEQRRAILQSLQAQAVLNHQLNWLNVSYIQTLDTIDALKA
RNAMLSEQIAEKDALQHHLQQENALLKSQIQALKAIEKTLNKRIGDDRQP
R
>Tcr_0779 DEAD/DEAH box helicase-like
MTFASLGLSKPILDAVTQQGYETPSPIQAQAIPAVLEGKDVMAAAQTGTG
KTAGFTLPILERLSKGKPAGPNQARALILTPTRELAAQVSDSVETYGKQL
SLKSTVVFGGVKINPQMMRLRKGVDILVATPGRLLDLFNQNAIKFDQLEI
LVLDEADRMLDMGFIHDIKRILKALPKNRQNLLFSATFSNEIRQLAKGLV
NNPVEISVTPRNTTATTVTQWIYPVDKGRKAALLTKLIKENDWSQVLIFS
RTKHGANRLTKQLEGKGIKAAAIHGNKSQGARTKALASFKDGTVQALVAT
DIAARGIDIDQLPHVVNFDLPNVAEDYVHRIGRTGRAGAVGEAVSLVSAD
EVKELAGIENLIQKLLPRKIIDGFEPTNDVPETRLNHRPKKPKKPKKPKA
PHTSGKDTSENKPDAHAPKKNPANRNRRTNKPKSSPHSGSPKTSH
>Tcr_1490 Ribonuclease R
MIADPHADREADKYENPIPSREFIIELLEKEQKPLRIKQIATILDIDDDE
RFEALSRRLKAMVRDGQILRNRRGAFGLIQKMDLIKGKVIGHPGGFGFVQ
PEEGGGDLFLGDREMHKVFHGDKVIASVIGVDRKGRREGMIVEIIEHANQ
TILGRLHMEDGLGWVQPNNNRIAQDIFIPQDGLLDAEEGQIVMVEVIHQP
TKRSSAIGKIIEVVGDYLAPGMEIDSAIHAYDIPNEWPQELLDQLEAIPD
EVTQEDKEGRKDLRSLPLVTIDGADSKDFDDAVFAKRRKNGWRLVVAIAD
VSHYVKEGTPLDKEAYERGNSVYFPQKVVPMLPEKLSNDLCSLNPNVDRL
CMVCDMSIDNDGKLERTQFYDAVMNSKARLTYDQVHEMLTDKGSEHRKTF
KDVVPNVEDLNDLYEILKGARSERGALEFDTTETRIVFDEHRKIEKIVPV
VRNEAHKLIEECMLMANVATARYLKWHKIPMLYRVHEKPSEERLKNLRTF
LGDFGLTLEGGDEPDANDYATITEAVKGQPHEHLVGTVLLRSMNQAVYQP
DNLGHFGLNYEYYAHFTSPIRRYPDLLIHRAIRFAWTKQDVSKFKYSEKD
MKALGEHCSGTERRADEATRDAVTFLKCEFLSHRLGEEYDAVVTAATNFG
LFVELEPLYVEGLVHITELGEDYFHYDASRHCLKGERTGKVYRLGDKLRV
QVAQVNLDDRKIDLRFLSGGGDSSDEQAPIETKAADTSDSKPAEEAPSQE
DGDAPKKKKKRYYRKKGGGRNRKKKSSAAE
>Tcr_2185 transcriptional regulator, LysR family
MIELKHLKTLQALQQEGSVNKAATSLFMTQSALSHQIKQLEQSLNLKLFE
RKSSPLIWTSAGKILLKTAQDVLPKLDQAETTLRSLEKGEQGRLFIGVEC
HTCFEWLLPVMRAYQQEWQGVDLDIINSLANSANHSALQNLKHQKLDLVV
TSDPVPMPELVFKELFSYELVLVVPVGHALSELSWVSPEDFRQQTLIHYP
VPREKLDIFKRFLNPAGIQPAAERHSEMTLMMLQLVEGHKGVCVLPRWLL
ETLSDFQHLPRIRIGAQGLWANLYAAIHRDSENKAYLNNFIERVKQRMT
>Tcr_2155 hypothetical protein
MNHSERAAHPDIHAYIDGELTGAERAEFERGLQQDKKLQDEVCELRKIKQ
QMLEHYQKIPVPKIPKPQSRSFNSSWAVAASFVAAFGLGFFVSSDSLLSS
PYEPKTLSVAQNSTQKLLLHIDSNQPERTKALLQKTSALLQAQSTGSRMP
KMQIEIVANDHGIELFEEGNPSREAIVQLLAQYDNLKLIACQRALKRRAD
EGKPLAVIKGVETDKPALDEIVNKMQKGWGYYKF
>Tcr_0289 DNA-directed RNA polymerase
MKDLLGFLKKQNVSSDFDTIKVTLASPEKIRSWSFGEVKKPETINYRTFK
PERDGLFCAKIFGPIRDYECLCGKYKRLKHRGVICEKCGVEVTQSKVRRE
RMGHIDLATSVAHIWFLKSLPSRIGLMLDMTLKEIEAVLYFEAFMVVDPG
LTPLEPWQLLSEEEYLDAMDEYGDEFEAQMGAEAIKKMLQAIDLDAEATR
LREEMEATSSETKQKKISKRLKLIDSFVQSGNKPEWMILDVLPVLPPELR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLMAPDIIVRNEKRMLQ
ESVDSMLDNGRRGRAVTGTNKRQLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVIVVGPSLRLHQCGLPKKMALELFKPFIFSKLQKRGLATTIKAAKKM
VEQGLPEVWDVLDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAINLH
PLVCSAFNADFDGDQMAVHVPLSLEAQLEARTLMMSTNNLLSPANGDPII
VPSQDVVLGLYYITREKINAKGEGKAFSNWMEVQRALDAKAVHVHTKIKL
KIEETVIDDAGVETVKKGIVDTTVGRALLLRILPKGLGFDLLNLNLTKKN
ISKALNACYRILGPKETVIFADQLMYAGFKWSTLAGLSFCSDDMLIPDDK
APIIERADEQVTEIQRQFAQGLVTEGERYNKVVDIWSHTNELVTKSMMEE
LQYETVTDAEGNEVKQTSFNSVYMMADSGARGSVAQMRQLGGMRGLMAKP
DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDVVVTEPDCGTDASITMAPHVEGGEVVEELKERILGRVVAEDVAG
LDGEIIVEKGTLLDERLVNLIDESGVDAVKVHSPITCETKFGICQKCYGR
DLARGHMVNLGEAVGVMAAQSIGEPGTQLTMRTFHIGGTASASTAQSQVE
VKHEGKVKFDNLKTIKNTENQVVVTSRSGEISILDSLGREKERYKIPYGS
MLNVKDGIDVTSGNVLATWDAHTHPIITEAEGIIQFGNFDGAVEEHVDEL
TGLTTHVVKSSKERSSATKELRPYIQLVDDKGEVVPFPGTQTPAMYYLPE
NSVVVVNQSDKVGAGDILARIPQESSKTKDITGGLPRVADLFEARVPKEP
AIMAEVSGVVGFGKETKGKQRLVITQDSGEQHETLIPKWRSVDVFEGERV
EKGDVVVDGNPNPHDILRLLGVERLTKYIVDEVQDVYRLQGVRINDKHIE
TVVRQMLRKVEVRSTGDTSLIKGEQAEFARVLEMNEKVSDEGSVEASYQR
VLLGITKASLATESFISAASFQETTRVLTEAAVSGKEDKLVGLKENVIVG
RLIPAGTGFAYHKARKEASEKTQRELAAFMNTDDESAVQEEVVEETISVT
ESVEQTTE
>Tcr_1205 sigma-54 (RpoN)
MALMPGLQINIGQQLKLTPQLQQSIKILQYSALEVQQTISTTLETNFMLE
LDEDGSDDTEEFDAADSEYEEEPLNESSETETELDIEASDTLSDDLQADY
EWEEVYIDSPISNSIKSNNNDDYTAPENYTSAEVTLSEKLYWQADIYSWP
DSQDVIASYIIDDIDDEGYLKTPLEDIMASLQKNEPDLIVSLADIEQVLS
VIQQFEPTGVGARDLSEGLILQLKALPQNPYVVTAIKIIEENFDLLSVRD
YKRIKKIYLLNDEELMEVIHVIQALSPRPGREYSSTQGEIVIPDLKLYRS
KDGFIVELNQDAFPRLTINSAYIDMAGSLGTDSSDSKQIKEQLIEAKGLI
KSIQSRGETLLRVGKYIIEKQARFFEEGEQAMQPMVLRDVAEALELHEST
ISRATNQKYMQTPRGTFELKYFFSTGVSQYGSDDQSAIAIKSHIKQLIEG
EDPNKPLSDNKLMALLEEKEINVARRTIAKYREALHIPSSSERKKLNKFK
>Tcr_0092 Rhodanese-like
MEELSQLSGLSVANTSRHLQQLKQAGLVSTRKQGKNRFYQLAGEDVVNLV
KQLRQTAESHLAEVDRLVTSLMPQKEETQAITSEALAHQMQHNQFIVLDV
RPAKEFEQGHIKGAVNVIPEKIDETIKTLPNNKTIVAYCRGPYCVYSYQM
VEHLRQNGRDALRLDEGFPEWKAAGLPYETTLSH
>Tcr_0852 transcriptional regulator, LysR family
MSDYSSNKPKNFLIRHASLRQIQVFESVARNLSFTKAAEELHLTQPTVSS
QVKSLGEAIGVALYEQVGRKIYLTQIGEEVACSCRDVINNFSNLEMKLDD
YSGMKRGRLRVAVMTTAKYFMPLALGHFCKKYPDIELELTIANRNNLLKR
ISRNLDDIYILGQIPPSDLDLEVIQFAPNPLVMIANREHELAGKKVTLKR
LSKEPFILREEGSGIRMAVEKAFSDKGLKVNGRLTLKSNEAIKHCVVGDL
GVACVSKHALYLESLEKDTGPIVELDVEGFPIEKHWNIVYLSGKELSVIA
KEFLDFLMESGNEYIHL
>Tcr_1269 Helicase c2
MSLKIQIQSILGKDGQLSQNTSDYEVRHAQVEMAETVAEVIDEDQTLLAE
AGTGTGKTFAYLIPALLSGKKVIVSTATKTLQDQLLRKDIPLLMDICNAK
GTAKILKGRENYICPQRLEIAETAEQNTKEVWRKLSLIHDWQEKTLIGDK
SELTTLDENDPIWSRVCARMEFCQANECTGDNGCFYPGVKQQATDAEILI
VNHHLFCADLALREQGFGEILPEADIYIFDEAHQLPDIAAQFLGFSVSRF
QLDELVRDVRLAYKKESPETIELSDQAKAVEDKIRIFNEALGKWEKRWTW
ESFSEAKTGHKTLEHLRNQLSLLAEVIKPITDRGKLLSALYKRTQEFEKQ
IETWLKASSENQIRWVESSQARFKLNLTPLSVAAPFSRQRDALGGAWIFT
SATLSVNQSFDYFAHRLGLESARTHQWESPFDYEQQAVIYHPIGLPDPKH
PDYIKICLRAAWPLLLASQGRAFLLFTSHKALQEAKVILSQHWEGTLMVQ
GDGPKTTLLARFKETENAILLGTSSFWEGVDVKGDALKLVLIDRIPFIPP
DDPVVQARESFLKQKGLSGFFNFQIPEATIALKQGAGRLIRDSSDKGVLM
LCDPRLTQKPYGKIITNSFPSFKWVYDVNEAKEKLL
>Tcr_2179 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase
MHLNFHILIVDDISENIQVAMSLLREEGYQFSFATDGEEALRLADENDFD
LILLDIMMPRMDGYETCRRLKANARTQDIPIIFLTAKVDIDAISKGFKLG
AVDYITKPFHGEELIARVKTHLELYASKQLLKQNNLTLQENLVHREKRYT
TELEENQKEMIFVLTELMEATSDETGQHIRRVAEYSKLLAHYHPGLSIDD
EIIIYHAAPMHDIGKITIPLDILHKPGKLTDEEFNIIKTHTTSAYEMLRF
SKRKFIKSAAIISLQHHEKWNGTGYPSGLKGQDIHIYARIVAIADVFDAL
THKREYKDAWSIEAATEYILEHNGTQFDPQLIDIFTEHLDEFVAIAKT
>Tcr_2126 transcriptional regulator, MerR family
MKSSQPTSDALFPIREVAKLTGVNPITLRAWERRYGLIEPIRTDSGHRLY
TQHNIDTLKEVVQLTQQGIPISQIKNLVDAAKPKTIEPKLEKDLAPQLTK
LLEHQNIIELNALLDSILADYPSNFWRNLLSQLTLTLSQDQKTPTYRLWQ
SLLLPRLYSRLHLSTRQLTQPLKRVWVQSTTETSDLQRALAALQLVSKGF
YPLWQSPGNVAFETLLTDLQALHCMGIAIVDDSGNFDTDGWQKWIEAHPS
FELSLFLNQKSNDLAHHIQVTYHPLNNALLDQ
>Tcr_2009 DEAD/DEAH box helicase-like
MNTEIKFSDLGLSAPILKTLEEIGYETPSPIQEQAIPVLLKGGDILGMAQ
TGTGKTAAFALPILSKIDLKQKDPQVLVLAPTRELAIQVAEAFQTFSRGV
KGLHVLPIYGGSEYGTQIRALKRGVHVVVGTPGRVMDHIKKGTLKLDTLK
VMILDEADEMLRMGFIDDVEWILKHTPDTRQIALFSATMPKEVHRIANTY
LQDPTEVIIKQKAATASLIEQKYWLVSGLHKLDALTRILEAETFDGIIIF
VRTKTATVELAEKLEARGYAAAALNGDVAQNQRERTVDQLKKGKLDILIA
TDVVARGLDVERISHVINYDIPYDNESYVHRIGRTGRAGRSGTAILFVAP
RERRLLRSIEASTKKKITQMELPTAQEINDSRITRFKDKIVDAAQGTDLD
FYQKMVESIESDNNIPAIEIAAGLAKLLQGDVPFFLDEKPVKHKEFKERD
GGRERNPRRAKGERSERGDRGNRSRRQTPPNEGMARFRVEVGRQHGVKPG
NIIGCIANEAGLDGEFIQKLTIEDNYSMVDLPSDMPKNVFNELKGAWVCG
QQLKINPVKDVSQSAKRRLKPRKK
>Tcr_0788 transcriptional regulator, BadM/Rrf2 family
MQLTKQTDFAFRVLIYLASKKTGELSNIQMISDRYEISKSHLMKVVQKLV
SHGLVTSVRGQHGGIYLEKELHEITLREVIELMEATLTPVNCDEPGCKIK
EVCQLKIYLVEAQNQYLTYLEQFTLADIVNDTIRQEIFPDMIRIS
>Tcr_0670 hypothetical protein
MSNVVSKAEFARQQGINKSTVTRWDKAGRLVLNERGKVLVSESIKLLAET
DGHRTDLKEKHADSRGKNITKPSSEQTDHDYSDMEAKEEDIGKDRAHWKA
MTLDSENQMMLLNQAISEGDRVKLEDVIGDISGLAKSIKQGIQNLVDNLT
PQIANISDEYEKKQRIESEVQKLIQQLS
>Tcr_0734 Ribonuclease III
MSEMEKQAKLNRLSKSLGYQYKNIEFLQRALTHRSMGAKNNERLEFLGDS
LVNFMIADALFHQFHKISEGDLSRIRAFLVKGETLAKIGKEYQLSDYLML
GPGELKSGGYRRESIIADTVEAIIASVYEDGGLDACRAFVMRLYENRLKE
LDPSKIGKDPKTRLQEFLQSNREQLPEYSVMTVNGPAHAQEFTVSCYVAK
LNRKFEATATNRRKAEQVAAQEALDILENDDND
>Tcr_0426 transcriptional regulator, LysR family
MQNLHITAQQIRIFEAVSRNLSYTKAAAELNLSQPAVSVQVKRLEENNEI
KLIEVIGKKLYLTSAGEHMFKTCTTILEELKTLNTNIKTDQNKIEGELKL
AIVTPAKFFIPYVLKAFLNKYPDVIPSITVVNRRRILDELKQNQYHLSIM
GRVPPELKMEAFPFFKNELIVAAPPNHPLAKHKQIPLSDLINENFLMREA
GSGIRIATEERFAEEGYAIQPYMELGSTEAIKQGVMAGLGISVIARHAVR
IEAKYDHLTVLDVQGFPLSRDWYIAKMQDKVLMPPAVAFLEFLKSVDINK
LLAMSDTR
>Tcr_0904 Iron dependent repressor
MASKALEDYLKIIYKLEEENESDKGVSTSAIAERLAISQASVSNMLKKLA
DKKMIQYEPYYGVSLTAKGRKVALNMIRRHRILELFLVERLGYQWDEVDE
EAEILEHAVSDKLANRMWEELGQPTQDPHGSPIPNEKGEMVQPKMASLAE
IEAPAKAKVVRIQNRSPEELRYLFSIGLVKDAGVIIHQKAPFEGPLSIEI
NGEQHALDYRLAQSIFVA
>Tcr_1947 putative transcriptional acitvator, Baf
MLIFFELGNSQLKAATILKGNYQFLGSVRHDAILSGEFIESFNLNEQNPT
AVYVSSVAPSQLNAALTEVIQQHFKLYPTFLATQPSCCGIECGYEKFDQF
GVDRWMAILGACSGSNKPTFIVDAGTALTVDAVIDKKHIGGFIVPGLGLM
RDSLLKNTALSEQSLVLQSVQDGLLAKDTAGGVMGGTLYMLGSYLNSLLV
DLELETGRKFDCIGTGGDFLSLKPVLDKPYNYVEDLTLRGMKEVIESL
>Tcr_2156 sigma-24 (FecI-like)
MIGNWVKLKTNQVKLNAVLESNYANLYRIAYAWSQDESLAQDLVQDTMLK
SLQKADQVESFENVDRWLCKIMHNLFYDNCRQSARWQQVNVDDCDEQLRT
ESIETLYIHKQTIRNIHAAIGSLPIDQREVIVLVDLQGYSYQEVAEIAEV
PVGTVMSRLSRGRAKLKKLVTSEKFIPNYANNIVDLKKSNSK
>Tcr_1782 transcriptional regulator, ArsR family
MEEVNPLAIKEENIEKASKALKAMGHPLRLKILCVLGDSELPVMDIVSKV
GTTQSNISQHIDILREKEIITSRREGSKILCRVRDPQILNLLEAMQQTFC
PV
>Tcr_1122 NusA antitermination factor
MSKEVLAVVEIMSNEKGVEKEIIFEAIEAALATATRKSHNDEIDARVSID
RHTGDYETFRRWEVIEDDVEIEDHVGWYIRHMDAVDIEPHIEPGEFIEEP
MESIEFGRIGAQTAKQVIIQKVREAERKKVVEEYSKRIGEILTGQVKRID
RGDVILDLGDNVDAVIPRSELINRENFKMGDRVRAYVQDVSFRPRGPQIF
MSRACKEMLMELFKIEVPEIGDDLIDIMSAARDVGLRAKVAVRANDPRLD
PIGACVGMRGGRVQAVTNELNGERIDIILWDSNDAQFVINAMAPAEVTSI
MVDEDKHTMDLAVDDEQLSQAIGKNGQNIRLATELTGWELNVMSETDMAA
KHETESKGQMDLFVNGLEVDEELAEVLVAEGFTTLEEVAYVPAAEMLEIE
GFDEEIVAALKERAKDALLTQAIANEEKTAMAEPAQDLLDLEGMTEEMAK
TLASKGIITQEDLAELGTDELLEIVEMDADAASELILKARAPWFE
>Tcr_2134 sigma 32 (RpoH)
MTNQLIPFANNLTPGQNIESYLRTVQTLPQLSADEERELAEKLYHDKDLN
AARQLILSSLRYVVPIARSYNGYGLPLNDLIQEGNIGLMKAVKRFNPAEK
VRLMTFAVHWVRAEINEYVIKNWRIVKTATTKAQRKLFFKLRSTKKSLEW
LGDKDADTIAKELGVTRKDVLEMETRLYGQDMSVDLSPDEEEANSKTYPV
LVSQELDPETQLANDSQSDHELGKMHQALKQLDQRSRDILQQRWLSEDKT
GLKALSEKYGVSMERIRQIEQQAIKTLHASMTA
>Tcr_1382 two component transcriptional regulator, LuxR family
MAKAKPKVLLAEDHDLVRAGFKSILDSDGTVKVIAEAQDGETTLSLIEEK
QPDILIIDLSMPKLSGLAVITQLKKQKNPIKIIVLTAAEAPNVWKEVLDL
GVEGLALKSVSKAELVSGIKSVIADENFIHSEIQPALDAYLAELEGQKTP
EEDSGDKPSRPKKLSVREKQVIKLVAEGYKTKDIADMLEISDRTVSKHRE
NIMTKLGMTASAELVNYASHIGLLKVALDEIR
>Tcr_0880 GreA/GreB family elongation factor
MQRHPMTKEGADALQEELQHLKKVERPAVSNAIAEAREHGDLKENAEYHA
AREQQGLMEARIKQIESLLGSVQIIDVTKLNPNGKVVFGSTVTILNVDTE
EEVTYKIVGEEEADIKHNKISVNSPIARALIAKEEGEEITVKAPSGNIEY
EIVEIQYV
>Tcr_0233 conserved hypothetical protein
MKKTDIDMYCSVMEEIKKRTSVINFLLSGNGHVLFEPTTLESIALQIRKI
LELIAMASLVANKKEYQKVYSNFAKAWNAEYLLKDLSRVNADFYPKPLLE
KPSEELGITSHLIDRNNDYLTKEEFIKIYKKCGAILHASNPLGRKIRYEY
YKKNIPEWVQKIMNLLNNHQIKLIHHNGFYLIHMKEDRDDKVHFYEFTPV
QNYNS
>Tcr_0425 transcriptional regulator, LysR family
MPEKISILARNATLRQLQVFESIARHNSFSKAAEELHLTQPTVSMQVKKL
AEILESPLFEQIGRKAHLTEAGKALYDSANNILQQLSIAEQKINHLKGFS
GGSVKFTVISTAQYFVPKVIQNFTQSYPDVTIIMRVGNKESLIERINNNK
DDFYLLGQPPEDLNVESSQLSVNPLAFLANSDHPLVGKQLSIQDLVNEPF
LMRETGSGIRAQIEKVFGEFEFQPNIKMVLGGNEPIRLGLLQNLGITVAS
VPTLMEEINQGKISILNVKGFPINRHWYLAYPKGKVLSIAAEKLIELLKI
EGEKLSEQAFNQFR
>Tcr_0862 GCN5-related N-acetyltransferase
MTSPNTPHIQQAEGNTFRLGNHFLKKHKQVQAGRDDRLYVAQLDDMKIVG
AFWLDIQPTYYWIRNVFVESSNRHLGTGSKLLQYAIKENQKIPYYCFNSP
SLQPFYQSIGFEGILADELPDPLKIRLLRYQANGKNLMAMRFTAS
>Tcr_0942 hypothetical protein
MPQPESVIDIKKTLKARQLLEQFDLNLTRLKEIGLHPDEDEVDTLEMLSS
CLEEAIENGMDTSILQSRANELARYALERGYEQHEVENLLTMRPNPNGKR
LPND
>Tcr_0319 DNA-directed RNA polymerase, alpha subunit
MQEMLEQLLTPRLVDIKTVNGFNSRVTLEPLERGFGHTLGNALRRILLSS
MPGAAIVEAQIDGVLHEYSAIEGVREDVLEIMLNLKEVAIKLNETSEAEL
TLSKKGPAVVTAADIQLNHDTEIMNPDLVIAHLGEGAELSMKLKVEKGIG
YRAAVQSSDSESANIGVLKLDASFSPVKTVSYEVQNARVEQRTDLDKLIL
NVVTDGTLDPEDAIKQAATVLHYQLIAFVDLKHKEIVVQEEEENEFDPIF
LQPVDDLELTVRSANCLKAEQIYYIGDLVQRAESSLLKTPNLGKKSLQEI
KDVLAQRGLGLGTKLENWPPSSLVSKESA
>Tcr_1555 transcriptional regulator, LysR family
MADRRLQVFYTVAKVLSFTKAAETLHMTQPAVTFQVKQLEEFFNTRLFDR
THNKITLTDAGKIVYDYAEKILDHYEKMNSEVRELTGEVTGSLLIGASTT
IAEYMLPSLLGAFKKQFEDVNIRLQVGNTDAIVAMVENNMIDLGVVEAPV
YNKNLEVEVCRLDEMVLIVPHGHPLSNRDKISIEDMRKYRYISREEGSGS
RSVIDNYIREQGLSYSDLNVVMELGSPEAVKMAVESDVGLAIVSRTTISK
ELKLGTLKALPLDPPLNRPFSHVRQKHKFRHRAVGELLDFAVDYCKEKAV
EQGFKLPSEEDMEKYTSK
>Tcr_1310 hypothetical protein
MIRQSFQFILLALLLTFISVSVQADVSNIHPNVQKILDQTDVPEGVVFDI
ETLDSDALNSLAPYVIQQIELIRKRYPDVDIAVVTHGAEEFALQKQAQSQ
NADLHAMFNRLVTDQSVSVHVCGAVGGLKNLTREDFPEFVSYSDSGMAQL
NDYKALGYQVVVIKQLSEKERKALFETPKKFIQ
>Tcr_1057 cold-shock DNA-binding domain protein
MSNTTGTVKWFNESKGFGFIEQESGPDVFAHFSAIVSSGFKTLAEGQKVE
FTVTDGPKGPQAENIVAL
>Tcr_1883 DEAD/DEAH box helicase-like
MTFEELDLDPKLLTAIEEQHYHKPTPIQAEAIPEMLLSKDVLAGAATGTG
KTAAFVLPALQFLLDDPRPSRKPRVLILAPTRELAFQIHKVVKQLGAHCP
FESNVVTGGFASDKQLEILQSKIDILVATPGRLLNIMSKEFIDLSDIELL
IIDEADRMLDMGQGPDVLALIEAIPGDFQAACFSATLAGSGITKFAEEVL
DSPEIIQVNAPNEKSEQIQQWVYLANDKAHKKALLKAILEDETCQSAIVF
CNKKDRAIELADWLQNEHISSTVLHGDFIQAKRLEKTQKFKQGKIKVLVA
TDVAARGLDILNVTHVINYDVPYRGDIYIHRIGRTGRAQQVGIAINLVER
HDITNLQRIEYHLQQSLPVSKIKGLEPNFKLKDVLKKPKKKKKKSTKKKK
K
>Tcr_1702 transcriptional regulator, TetR family
MANFFEEADISASKKRILNSALVLFVEKGFFNTSIPDLVAHSGVSTGSIY
YAFKDKEHLAMTLMDLLLAKVEDDQAKLLTTYSDCWQRYYHLAKWLFELT
EQFPHVMQFILYARHREFMPTIQPLCSSKPFMTLRGVLEEGQQSGQIRAM
DLMVASSIAYGSILRLIQLHLDGLAPEPLNEHLDELTRAAWRAIKAD
>Tcr_2101 transcriptional regulator, ArsR family
MILDILSQSECDVDTLHRKLGLSVANVSKHLQNLKQAGLVKSRRDGLRII
YKLSDESVFRLIVSLREVAETQLEEMQELLVEHLKPNTPLEPVSLQVLKK
MERNHQSYTLLDVRPYDEFSSGHLPSAINIPIDELPKNLSLLKLDKPLII
YCRGPYCMWSHEAAEMLQQKGYNAKRLIEGYPEWRATQE
>Tcr_1872 transcriptional regulator, ArsR family
MTIETKTVTLDNTAHLFKALSEPLRLRILALLLQRETLCVCDLVTVLEQG
QSTISRHLNYLKNAGLVNSWREGTWMHYQIEQAALSLLNLAQLQELLNTT
PECQNDLVALEKYEVHPRSCQPAS
>Tcr_0747 sigma 28 (Flagella/Sporulation)
MTGTEAYANVHKQTSGAAINIEAFLPLVKRIAYHLKGRLPDSVMVDDLIQ
SGIIGLIESSQKFDATQGASFETYAGIRIRGAMLDEIRKGDWTPRSVYRK
SREVSEAILKVESEKGREARDEEIAEVMGVSLDEYYHILQDTNSAQLLSI
DEPDHDELAEDRMVGTIKTPITELVESDFQGALAEQINELPEKEKLVMAL
YYDEELNLKEIGEVLEVSESRVSQIHSQAIKRLKSRLRDWI
>Tcr_1806 sigma 70 (RpoD)
MTRVERKQQLIDLIERAKDLGYLTFSDVNDVLPDDIEEDQLGQVLTILRD
FGIQLFESAPDADELLTKEGETFDDAAAEAAILALAEVDAEFGRTTDPVR
MYMREMGSVELLTRQGEVEIAKRIEYGIRDMLEAMAKYPQVAMELLASFS
RIEDGEGKTADLIQGFIRPADLVDIPIEELSPDNDSGEPKEDGINPEELD
AFLQKLAKLNADTLKAEEKNGYSDPKSVKKRAEIVALLATVKLSPVFVNR
MIKGIKLRVSSIREQERNVVNAVMRQVGVPRPSFLKLFVGSETDYDVLDR
LKEAHPDKADALEEVRADVKRAQKRLAMIEKAEKMPINQYKTIYKDLSKA
ESIARIAKREMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVEK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRIQR
QLLQKMGREPTPEELAEEMEMPEDKVRKVMKIAKEPISMETPVGDDEDSS
LGDFIEDSNILSPQDSADLEGMGETVREMLSTLTPREAKVLRMRFGLGMN
TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRAERLKSFLD
>Tcr_2043 hydrogenase accessory protein HypB
MCEDCGCFITDVAEEHHHAHSHQHAHVHDNPQLNEPKTVDVIKNILHKNN
HEAMHNRAHFEKAGVLAINLMSSPGSGKTSLLEGLAEFDKRPFEFGVIEG
DLQTSRDAERIQAKGIPAYQIQTGSACHLDAFMVHKGLHAMPLESMDVCF
IENVGNLVCPASYDVGSHLNVVLVSVPEGDDKIEKYPVMFHQADLVIISK
VDLLPHFEFDLEAAKAMARKLKPNVDILELSTKDTASIQRLVDWIEFKRK
MRG
>Tcr_0858 putative prophage repressor
MTEKNTTAGGARKGAGRKKGSGKFGEDTKVIRVPESKVTVVKHWLSEQAE
AEQQQKTLQEAQALAGDKLQIQLPEFNEEVLLPLHSHKVVAGFPSPADDY
VETRLDLNDKLIQNKQATFLLTVQGDSMKKAGIQDGDILVVDRSLTPQDG
KIVIAALDGELTVKTLSIKSTGTWLVPENDNYPPIPVREESDIVIWGVVT
ATIKQF
>Tcr_1203 two component transcriptional regulator, winged helix family
MLNTDYTISIIEDDPLQLENLETALTEQGFQVKAFSDRKSAEMSFEDSLP
DLVISDIILGNEIDGGFELAKHLLSYERAIPVIFLSERQSEFDIYTGHAL
GAIDYLPKPISLSVLTAKVKNLLRITGSSPAVDKNEQSLIEGLGLANEEF
KAYWQEKPLDLTATEFEMLKQFALTGERGVVTYDTLQESTQGVVERNTIN
THICRIRSAFKKIDPEFNLIHNEYGRGYSWQKK
>Tcr_2144 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
MPTPTSLDGLIEKASVYLKKRHLKQIKAAFEFGAEAHKGQMRKTGGDYIW
HPVAVAEILADIQLDHESLIAAILHDVVEDTPYTKQDIIDRFGENVAEIV
DGVTKLGKLEFDNPQEAQAENFRKMVLAMSRDIRVILIKLADRLHNMRTL
GVMRPDKQRRIARETLEIYAPIAARLGINAIRIELEDLGFKAMHPFRFAV
LERAVKKARGNRAEIVEQINEAITNRLHEENIPANVIGREKHLYSLYKKM
KYKHLSFDEILDIFAFRVVVNTADECYRVLGSVHSLYKPFPGRFKDYIAI
PKSNGYQSLHTVLFGPFGAYIEIQIRTNEMHEVSEHGIAAHWVYKQDATE
DGRAIEQPLSAVEIRAQEWVKNLLEIQQGAGNSLDFLENVKIDLFPNVIY
VFTPKGDIITLPAGATAVDFAYAVHTNVGHGTVGCRVDKKLIPLRTHLES
GQTVEIIRSKELQPNPSWLQFVTTAKARSQIRAFLKNQQSASAQALGKRL
LEKGLRNFNMSYTGLTDVIREGIVVEFKLESWDHLLEEIGLGKRLANLVA
KQIHDVVLGSDDSIFKSHTTEDPSQPLVISGTEGMAVNYAGCCHPIPGDE
IIGFISAEKGLVIHRQECKNVKQFKNHPEKWLDVNWEENITQTFDVELQL
EILNRRGALATVASNIAEMKTDIDRVRSEDKDETYSLMNIVIRVHTRKHL
ADVMRKLKRLPIVEKIQRL
>Tcr_1301 transcriptional regulator, TetR family
MASLVGLSGIKDICLKNTYENIINAAVCVWNEDYSAPLKSIAKEAGISRM
TLHRHFCGRDAILLAIVEDFIEKIVLVLNQAEKDQDEPVQQMECLVKNTH
RLIEDYNFLFDLFEQKGRPEDLVERFKRFEDLFEAFFVTIQAKGVIKPTI
DFRWANALFEGVMKSGFRMKQKGFDQDVDLAAMIWDAYQSAIFTPEAIDE
YNARV
>Tcr_2153 ATP-dependent DNA helicase RecG
MLAQLKLTTLKGVGDKLVEKLNRLGLFHVQDLLFHLPLRYQDKTKLTPAS
QLLIGQEALIEGEIIGQHMTQSRNSSLIVKLVDPSNQPISCRFFHFHYRQ
AQQFKRGLKLRAYGEVRSGPSGLEIVHPTYQLFNPESPPPLEETLTPVYP
VTEGLGQPTLLKLMQQTLQLLKQYPLEEALPPSLLEELRLPPINQSLQTL
HEPQPEDDLLQIKRFEHPAQRRLIFEELLTHQLSLQLLRQHEKQRIAPKV
PASETASRLLKNLPFKLTGAQSRVLNDIQQDFNQPHPMQRLIQGDVGSGK
TIIAALAALQVADAGYQVAVMAPTEILAEQHKNHFLEWLDPLDIPVAWLN
GRMKAAEKREALQKIESGKAKVIIGTHALFQDSVTFDHLGLVIIDEQHRF
GVHQRLALHDKGTQNDSHPHQLIMTATPIPRTLAMTAYGDLDLSIIDELP
PGRQPIETAVLNNTKRFEVMEHLQAQCKQGVQAYWVCPLIEESELLHAQA
AEVTAQQFMDHWPDLRVGLIHGRLKAEEKTERMRAFKNHELDLLVATTVI
EVGVNVPNASLMIIENAERLGLAQLHQLRGRVGRGSKKSHCVLLYQSPMG
ETSKARLNIMRESNDGFKIAEEDLKIRGPGEILGTRQTGGLHFRIADLKR
DQAMIPEVKHYAELLVRQHIEVADALNTRWVGEKMDYKHA
>Tcr_2002 transcriptional regulator, LysR family
MGQLEDIQVFVRVVEAGGIGKAAEQLNLAKSAVSRRLADLEDRLETKLIN
RTTRKSSLTEAGQIYYEKALSVLDSVTEMNQMTVSREASLEGTLRLAVPL
SFGLEHLSPALDRFAQEHPNLTLHVDFSDREVDIVEEGFDLAFRITDLKD
STIQARKIAPIRFVMCASPGYLKKYGTPKTAEDLKQHKILRYGSKGAESW
HLIGPDNQTHHLNLPSHLYSNNGSFLLSMAKAGHGIALEPTFIAWEALAT
GELTPVLTDYRIPIMHAYAVYPQNRFLSQKARAFIDFLVARFGNNAYWDQ
G
>Tcr_2078 transcriptional regulator, GntR family
MIDRYSPEKIYMQIAKAIESDLQEGFEAGDLYLSEKTLTEKFGVNRHTVR
RSIEELVKQGGLEKRHGFGTFVAEKRLAYRIKGHQRLTEAVEANGLSVET
TVLSKSTILARGSIAENLQLKNGEEVIQVNTLRKIDNKELALISHFLPKA
FCPEVLESYESGSLGSFLINVYGIKAKRISSLVSSAMPNASDNFQLGMMG
SQPILKVKTLNKDDVSGKIIEYSVSRFRSDMIQLEILINPEQP
>Tcr_1660 transcriptional regulator, MerR family
MVQPKSFDSQKQLEIDLPDKKYFTIGEVSEFCQLKSHVLRYWEQVFPQLQ
PNKRRGRRYYQKRDVQLVFEIKSLLHEQGFTIPGAKARLSKAEGVVEAAE
TSEAESALKTLRQIRSELKEFQTYINQRY
>Tcr_1224 transcriptional regulator, AraC family
MSKQDVKHYINRMNRVCDYILAHLNDDLSVEKLSEVACFSKFHFHRQFST
YTGMTVGKFVLMQRLKQASKQLAFNQPMRVIDIALEAHFESPEAFSRAFK
NTFGQTPSQFRQSPNWHTWRAQYALPIIERNIVMNIDLVEFDHTLIAVLE
HRGPAEKIEDSLNIFRKWRKTTPYSPVANHKSFGLVYDDPDTVEPAKFRF
DLCAEVKETIPDNAQGLINKAIPAGRCAVLRHEGSLNTIGDKVRHLYCNW
LPNSGEELRDFPCFFHYTNLNGDTPESDLVTDIYLPLQ
>Tcr_0288 DNA-directed RNA polymerase, beta subunit
MTYSLTEKKRIRKDFATRSSILEVPYLLSLQKESFKEFLQKDKKPLERDP
IGLHSAFSSVFPIHGVAGTADLEYVSYTMGQPEFDVKECKQRGVTYSSPL
RVKMRLVLFDKDAPAGKRPVKDVKEQEVYLGDVPLMTENGTFVINGTERV
IVTQLHRSPGVIFDSDKGKSHSSGKVLFNARIIPYRGSWLDFEFDHNDCV
FVRIDRRRKLPVSIIFRAMGYSSEEILDTFFDHTHISYKKGAFVMQLVPS
QLKGQTAAFDIADGDKVIIKAGKKITARNIKQLQEAKVDSVVVPEEYLLG
KVLSSGITNEETGELVARSNEVIASDLIETMKSIKDLSFRILFIDDLENG
SYISDTLNLDTTTSQLEAQIEIYRMMRPGEPPTKESSEALFNSLFFDEAR
YDLSSVGRMKLNRRLGRKDNEGSLVLENQDVVDVVKELLNIRNGLSTIDD
IDTLGNRRIRAVGEMAENAFRVGLVRVERAVKERLNQAETDGLLPQDLIN
AKPVSAAIKEFFGSSQLSQFMDQVNPLSEVTHKRRVSALGPGGLTRERAG
FEVRDVHPTHYGRVCPIETPEGPNIGLINTLAIYAKTNKYGFLETPYRKV
IDGQVTEEVEYVSAIDEAQFVIAQASAAMDSDNKLLDELVTARHKNETIL
ASSQDIDYMDVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLR
ADKPLVGTGIEKTVAIDSGVTVIALRGGEIVSSDSARIVVRANQEEIAEG
ETGVDIYNLIKYQRSNQNTCINQKPIVKAGDVVSRGDVLADGPSTDLGEL
AIGQNMRIAFMPWNGYNFEDSILVSERVVQEDRYTTIHIEELTCLARDTK
LGPEEVTSDIPNVGEAALSRLDESGIVYVGAEVKQGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVSKGVEGTVIDVQVFTREGVKKDAR
ALAIQEDELQKVRKDIDEQYKILEEDTIDRIQPMLIGQKLVDGTEITADF
LASQDSSKWFGLNVADDALSSHLESLEKQLVAKKEELNGVFEEKKKKLTQ
GDDLQPGVSKMVKVYVAVKRRIQPGDKMAGRHGNKGVISRICPVEDMPYD
ETGRPVDICLNPLGVPSRMNVGQILETHLGLAAEGLGAKINAMLEQQADI
KELKSFLHKIYNETQGQKVDFDSLTDAEIIELAGNLRKGVPMASPVFDGA
SEDEIKALLRLADLPESGQMKLYDGISGEEFDRPVTVGYMYYLKLNHLVD
DKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEM
LTVKSDDLNGRTRMYKNIVDGNEYMEPGIPESFSVLRKEIRALGIDIELE
QE
>Tcr_2183 transcriptional regulator, XRE family
MAIIVNLDVVLAKNKMKSNELAKLIGITEQNLSILKTGKAKAIRLSTLDA
ICKHLNCQPGDLLEFKDEDSV
>Tcr_0283 NusG antitermination factor
MAQRWYVVHAYSGYENKVKKGLSEYIERAGLQDSFGQILVPSEEVVEIRE
GKKRTSERKFFPGYVLVQMEMNEDTWHLVKSVPQVMGFIGGTSDRPAPIS
QKEVDRILQKVEEGVDKPKPKVIYEPGEMVRVIDGPFNDFEAVVEGVDYD
KNKLQVSVLIFGRSTPVELEFTQVEKN
>Tcr_1212 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
MDSAQTLYQTIFKTDEPDPLALQACQMALEAEKEEHKGLVRSIDAAIILS
DLKLDRDTLIATLISDMGLEQRYPIEKISDEFGDHIAQMVTGVRRLNHFK
EFHPATTSNEVQTERLRQMLLAMTSDIRIMIVKLAFRVARLRTLKNEPEA
IRQQIASETQMIFAPLANRLGIAQLKWELEDLSFRFLQPDTYKEVARQLD
AKRHGRETYIQGIIQSLEEMLKDSGIEHHISGRPKHIYSIWKKMTRKNVP
IDELFDLRAVRIYVDTVQQCYEVLGMIHSRWPYIKDEFDDYIANPKENGY
QSIHTVIIGAENKTVEIQIRTHEMHRHAEFGVAAHWRYKEGGKSIDPALE
QSINLVRQMLEYNDNPDLLNEISTELLTEHIYVMTPKNEIITMSKGSTPL
DFAYQIHSELGHRCRGAKINGKIMPLTYQLNTGDTVEILSVKGGTPNRNW
LNPNLHYLGSSRSRAKVRHWFNQQNKEANTESGESLFNKEARRLHAEHIS
AQEVAERFKYEQLDEFYEALGKGQINERQLTNAIQKLIKPEEDKPQARPP
SFPPEEQTEPGKAFVIGAPRLKTTIAPCCEPTENDQIVGYVTRGRGVTIH
KKECANILNLTFEEQKRLIEVAWYNAEPQGTTYEATLQILAFDRKGLLRD
IMMELTQWDINVNNSDTRTDKSDGSVSMTLDVDVEPHTNMGELLDQLEQI
QNVVSTSVNLNKQQAS
>Tcr_0786 transcriptional regulator, BadM/Rrf2 family
MSIKIYIRYTFMQLTKYTDYALRVLMYLAMQDEPDTKVQIKTISEKFGIP
KNHLMKVVHQLGKENMIKTVRGKHGGIMLCQPPSDIIVGHVIRKFEMTLS
PVNCEKPLCQIQEICLLKPALFKAMEAFLSTLDQYTLADITKNQPCLKDC
LLSQKS
>Tcr_0885 ROK
MIKMKVGIDLGGTKIEIVVLDFNNQVLFRERIETPQGDYEKTVDAIVTLV
QDTEELYGPFNQVGVGIPGAISKKTGKIKNANSTCLIGQDLKGDLASRLK
MTVRLANDANCLALSEASDGAAAGEEVVFGVILGTGCGGGLIVDGHIVNG
VNAIAGEWGHNPLPWRTSDDAENACYCGLKGCLETFLSGPGMSKHYERMT
GEVMSVQEIAALAQQENTAAQAMLETYAVWLAKGLASVINMVDPDVIVLG
GGLSNMTFLYQRVPELWGRWVFSDQVETRLVPPKWGDSSGVRGAAWLSKV
D
>Tcr_1862 cold-shock DNA-binding domain protein
MSELVTGTVKWFNDEKGFGFIEQEGGKDVFVHFSAINGAGRKSLMEGQSV
TMEVTQGQKGPQAENVTAQ
>Tcr_1338 transcriptional regulator, XRE family
MSEKEHQTLDLHIGKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQV
SPSLDSLLKISRTLGVPISSFFREFDNEEGGAQLVRSEEKLEVVRRGTKV
GHTYHLLAYDHGPKKLFEPFLISLDNKSEVFPTFSHEGKVFMHLLEGEMI
YRHGKQTYHMKPGDSLTYDARISHGPEELIEVPIRFLNIIFYDQNAPE
>Tcr_1396 NusB antitermination factor
MNLSDFKPGEGTEVPEEEKSVSVRTQTRRVALQALYQWQVNHSETVDIIK
QFSEEGRLVDTDVALFQEIVNEVANHAADLDELYAPFLDRAVARIDPVEK
NIMRMGVFELQNKLEIPYRVVINESVELAKRFGAEDSHKYINGILDKAAE
GLRSLEKTQTD
>Tcr_1015 DEAD/DEAH box helicase-like
MSFSKLGLSDPIVKAVSERGYDAPTDIQKQAIPIILSGKDLMAAAQTGTG
KTASFVLPLLEKLNTDNAIRGRSIRALILVPTRELAMQVETNVVDYAKHL
NLSSMAAYGGTDIDAQKQRLMQGIDILVATPGRLLDLAYQRALFFDDLEF
LVLDEADKMLDMGFIDDLYKITDRLPHQRQSLLFSATLTEAVRYLAADTV
SDDATEISISPQNKTTPKIKQWLITVDKDTKSALLSHLINEQHWDQALIF
VEKKHSAAKLVEQLGKRGIIADSIHSGRSQAAREQVLSEFKSGKLKFLIA
TGIAARGIDIDNLSRVVNYDLPYPAEEYIHRIGRTGRAGATGEALSLVSK
DDFKNLCAIESLLGHLIERIEIAGFPVKKIVPVSILNYRSKQK
>Tcr_1168 transcription-repair coupling factor
MSKNHSPYALLEADQISLKGQTSTWSLNNISESALALIEKAQNAPGLAVL
LTENMAEANKYSELLRFFAETDYPILSFPEWETLPYDQFSPHQDIISQRL
KTLYQLPSTKQGLLILPVSTLIQKVVPHQFIEKYTFLLQCGETVDIDAFT
RQLESSGYQRVSQVMEHGEFAVRGSIIDLYPMGSRTPYRLDLFDDEIETI
RSFDPETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRSHFGDDARNS
QLYRSVKDGQTVDGLEYYLSLFHSNIATFFDYLPSDCLFFNQGDLQAQIR
QNWQDYQERYDIAQHNPDYPVLVPSELILSENETFSALKAFHRIQFSLQP
TDKATATFKTYPLPDLTIQSNSEYPLAKLNAFLDQYASEHNGRILYCAES
TGRRETLLTILSKHPQFKGKLPKQIDSWGEFKTSKAPYEIIVGPLEDSVY
TDDFCILSESQIFGQTVIQKRRRKRKHSEFDNAISNLIELDLGQPIVHFD
HGVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRYTGASA
ETAPLHKLGSDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGYAFQTDE
EAYARFRAGFPFEETPDQEAAIEAVLSDMKSDKPMDRLICGDVGFGKTEV
AMRAAFVAAYSGKQVAVLVPTTLLSQQHLENFKNRFADWPIRIEGLSRFQ
SAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLIIIDEEHRFGVR
QKEQLKKLRTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRLAVQ
TFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAEEIQALLPEAK
VETAHGQMHERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHR
ADKFGLAQLHQLRGRVGRSHHKAYAYLFTAGKALMTKDAEKRLTAIAKHD
TLGAGFMLASHDLEIRGAGELLGDGQSGQIHEIGFGLYSDLLDRAVRALK
SGKQPELDAKLHTGAEVELGMPALIPEDYLPDIHTRLVFYKRIASAEDNN
ALQELEVEMIDRFGLLPDQVKNLFETTRVKLVIDALNLKKVEASEAMIRI
QFGSNPNINPLELIKLIQNHPKNYQLKGQIELKYFDTMLEMKQRIQAIEL
IVATISNKE
>Tcr_0969 two component transcriptional regulator, winged helix family
MTSETILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPVDL
ILLDIMLPGKDGLQVCKEVRTISQVPIIMLTAKVEEIDRILGLELGADDY
ICKPFSPRELVARVKALLRRSSLRQENHSTEDWHMDEERYQVRYQGKTVN
LSMVEFAILKLLSTSPGRIYSRSHLIGSIYPDNRVVSDRTVDSHIKKLRH
KLAEELTSKELIYSVYGVGYKFEFHT
>Tcr_1234 putative prophage repressor
MSNVAYLIPKRNQKLQLEAADPVELVEYDFVQVPLLGWTSAGEPIQMEMD
YDTVSVPHSMVRKETFALRVKGSSMIEENIEDGDIVIIERRSTAENGESV
VVRINNEEVTMKKFYIEKNGIRLQPANADMEPIYITNENIEILGIVTGIL
RQP
>Tcr_0205 transcriptional regulator, LuxR family
MKQLLLYVQDPHALKNWSKVSSLPKQILYTLEMDSQVHPITDHLLMIQLT
DSPANNVEIENVLQQGYTVLLFSNQPTAEEGMDWFKKGIKGYLNTFAQPS
RIDQALNTILAGNIWLGQNVMQSIIQSVSASQPLQNDSWKELLSAREIET
MEWILQGKSNHEIAEQMAISERTVKAHVHSLLEKLDAKDRLNLVIKIQNW
HKNAL
>Tcr_1884 transcriptional regulator, TetR family
MARQKQNATALKIRNTATKMFAEQGYDGTIMDELTIRSGVNKASIYYHFQ
DKPNLYEQCLTHLFANVADAVMEATERAVTENLKLEAFVKTFAKLAYEKP
EIPAILMREIASGGHNMPVTARQQMQRLLSNLKAILSTEPFSQDIESINP
LTPHFMIIGSLCFYLTSQPMRDRIESTEKLDPTLEEFTQQLINILQSGLV
KKTKEI
>Tcr_1877 transcriptional regulator, AsnC family
MTTEHFDKYDKAILRTLQNNGRLSNQELAEEIGLSPSACLRRFKALEEAG
VIVGYRALLDAKSLGLDLMALVHISMDKHTQERFRAFDEAVQALPNIVEC
LLLTGQTADYQLKVVVKDLEAYQDLLLNHITQIEGVSGVHTSFVLRKVVD
KTALPIE
>Tcr_1341 GCN5-related N-acetyltransferase
MFIRNADQNDLTAITSLLEQLFSIEADFDFDAEKHQAALTHIIQETDCAC
IVAANNQNQVIGVCTAQWVYSTATGNKSAWIEDMVIDQAYRGQGIGQKLL
NHIIEWCQQAGCGRAQLVYDLENTAAIEFYRKQDFKKTQLGVFSIPLHIS
NS
>Tcr_2174 parB-like partition proteins
MAKKRSGMGKRGVNALIGGKQKADSSIADLRVDKIAVNRLVPGEYQPRQQ
FGEEALQELADSIRIQGIVQPIVVKAIGNEQYEIIAGERRWRAAQKAGLE
LVPVVIRKADNQTTLAMALIENIQREDLNPIETALGLKRLMQEFDLTQQA
VADAVGRSRAAVTNLLRLLKLPQNIQNWLHEGKLSMGHARAIITLPEAIQ
LEMAEQAILKNWTVRDIEEAVQKVLVPAAQKKTNNRPELPAQLQKHQQFL
ADKVAANVKISQGSKGRGKIEIAYKSEAELNRILEELSK
>Tcr_0035 transcriptional regulator, NifA subfamily, Fis Family
MKHVEHLDIANQSEYIVIKEAAEQIEKAYEPQKAIHTILSLISRQMGLNR
GRVLLQESSSGFLHTAYAYGLTKEEIAQGRFATSEGVSGKVMHTGSPIII
ADIDREDDYLFRTVDRSTLPSETVAFIATPIIRNGTVVGVLAVNRLAKRS
RSLDRDLSVLKLISLFISEILAVHAMIEQKTQVLKEENEQLRAMALGQGS
QYGIIGESASLRAALNKVGRATNTAVTVLLTGESGTGKERFSRMLHLASH
RQDNPFIAINCAAIPTDLLESELFGHEKGAFTGATQTKQGKIELANNGTL
FLDEIGDLDFGLQAKLLRVLEERCVTRVGATKPIHVDTRIIVASHKDLHE
AVNQGHFRLDLFYRLNVFPIELPPLRERDGDIRLLARHFLNQANQEYHTS
AIYDKGAMAFLEDYEWPGNIRQLENVVKRSVLMADNGRLISARLIEKIIQ
EESAIIHGGHVKPLENQIPTSVKTDSWNTQENAINNSFHQEVNSTDAIGN
KNSMAWAYDQSLMNDKRAYWRVSEEESEQLKQALEMARGNKTRAALLLNM
TPRQFSYRMKKLDL
>Tcr_0948 DEAD/DEAH box helicase-like
MSTTSTSSPLAFSTLGLHPDLLSNLKTLDYHFLTDIQAQSLPPILEGKDV
IAQGKTGSGKTAAFGLGVLQKLDVKNFNVQALVLCPTRELADQVANEIRR
LARQLQNIKVLTLCGGMPMGPQISSLQQGAHIVVGTPGRIEDHLKKARLT
LAEVKILVLDEADRMLEMGFQPSLDTIIDQLPQQRQTLLFSATFPKQIEH
ISQRIMHQPVRVEVASRHDDSTITQHFYQVDSTEQRLQALRLVLLQAKPE
SSVVFCNTKKEVQMVADTLRDAGFSALALHGDLEQRDRDQTLIQFANKSI
SILVATDVAARGLDIEALDAVVNFHLAHDPEVHVHRIGRTGRAGSQGVAC
SFISDKESYKVATLAEYLGQDIQTEPLPDASLLNQPPLQAKMVTLLIDGG
KKNKLRPGDILGALTANDVLNAGQVGKIKITDKKSYVAVTRSMFKQALKQ
LGAGKLKGRNFRVHKLTR
>Tcr_2143 DNA-directed RNA polymerase, omega subunit
MARVTVEDCLDQVENRFELVILSSKRARQLSNGAEPTLDWDKDKPTVMAL
RELAENTINKEVVMSDPDTPPFFG
>Tcr_1478 anti-sigma-28 factor, FlgM
MDIKNINQNLVNNRLNDSANNSPKGNATSTPSGTPKSTDKVTLTDVSSQV
SNLEKQAAASNIDNSARIEELREAIKDGTYQVDAEKVANKLIQTEALLAG
S
>Tcr_0440 transcriptional regulator, Fis family
MTLLSDKNPASQALSTHVTMTLKNYFETLEGEVPSDVYQMVISQVERPLI
EFVLNETAFNQSRSAEILGINRNTLRKKMQLYKITPA
>Tcr_0617 transcriptional regulator, BadM/Rrf2 family
MKLTSKGRYAVTAMLDIALNQSKGPITLAMISERQDISLSYLEQIFAKLK
KSGLVLSARGPGGGYRLSRDANEISVSEVIGAVNEDLEPRKCRGKSNCQN
GVQCLSHELWADLSGMINEFLDGVTLQQIIDRRSSIQSVQFA
>Tcr_1789 putative transcriptional regulator, CopG family
MTQNNNHLVRTSASLPAKVLEDLDKLVIDRGFNNRSALLAEIIQREVSAY
QQDHTNEVMAGTLTLVYDHAVPGLQLKLNQLKHQYVAEIISSTQIQLMNH
HTLEVNLMQGPAQDLNKISHKILSNRGVKTGNLYLTNFALPPIFTAPNDL
SQETSDD
>Tcr_1771 sigma-24 (FecI-like)
MNLSNSFFEQLVKAYANDLFRYAFWLSKDRDVAEDLVQETFSRAWKSIDK
LKDEKAAKAWLITILRRENARRFEKYQPDLVDVETELMAGNVQYEPEEKL
EKQLLYEAILSLEPKFKEPLILQIQWGFNGEEIAEQLGLKLATVNTRLFR
ARQQLKKRLAQPERIQSFDRVTLK
>Tcr_0868 negative regulator of class I heat shock protein
MNLNDRSQLLFKHLMALYLNDGKPVGSSVLAKLPDVSVSSATVRNVMSDL
EKMGLIHSPHTSAGRVPTDHGFRVFVDSILTVQPLNSSLKREIQQGFTQA
QTQEELLGSASNILSGLTGMASLVMLPNQEQEMLRHIDFVKLNNKRVLVV
LVLNDQDVQNRIIEFEEDVSSSQLIQAANYLNEHFAGRYLSEVKKMLVER
LDELRKTMDALMLSIVEATDQVIEQKMQKSAPYFVSGKTNLLNYDELADA
EKLKALFHSFEEHSDMLGLLNKSMQANGVQVFIGSECGNETYQNCSVITT
PYEREGEVMGVLGVVGPSRMPYDKIVPKVDMTARILSSLLKK
>Tcr_0515 GreA/GreB family elongation factor
MNYITQEGFYRLTEELSFLWKTKRPEIVRAISTAAAEGDRSENAEYIYRK
KELRETDRKIRYLERHLKDINVVRDKPRQRDKVFFGAYVLLEDEDGQQKQ
YRIVGGIEARGEENEISVKSPVAQALIGKLLDQDVEVLLPDNRKIHYTIL
DIKY
>Tcr_2123 conserved hypothetical protein
MIRSNLSTLMGSRRLKVIDVAREIGVNRNAIDLLYKDEAKRIDTDTLDRL
CKFFKCTPNDILLFDPEDK