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# Chlamydophila caviae GPIC

>CCA00772 N utilization substance protein B, putative
MSTLTPESSLGSYVKISRPLPKQKMREIVLQMLYALGMDPSCEESLVPLL
MSETAVTQRHAFTALSFSKEILAKSSELDLLIAQTVKNTSLEKLTLMEKN
VLRLTLFEHFHGQPINTAILIAEATRLVKKFSYIEACTFVHAVLNDIFRL
AMPVAHQEIPLCCQA
>CCA00959 pGP6-D chromosomal paralog
MGNLKTLLESRFRKNTQDKMETLTRKRMEGELSPFLSRFSDIKLSPKEEE
KFRQLLENYTFEDQISEEDLKNLCTLSAQIKQIHHQAVLLHGERIKKVRD
LLKTYREGAFSAWLLITYGNRQTPYNFLVYYELFSTLPEPLKIEAEKMPR
QAIYTLASRQGPQEKKEAIIRNYRGESKGELLDIIRKEFPLISTDRRQTC
LAKQALAILSKGSQLLKKCSELSPEDYSSLEKLIKKLQKVKNNFFPNTKV
>CCA00677 serine/threonine-protein kinase
MQRYDIIRMIGKGGMGEVYLAYDPVCSRKVALKRIREDLSDNELLKKRFL
REAKIAADLVHPGVVPVFTICSDSDPVYYTMPYIEGYTLKSLLKSVWQCD
SLPKDLAEQTSVATFLSIFHKICSTVEYVHSRGILHRDLKPDNILLGLFS
EVVILDWGAALSKEMEEDFLSDIDVRIPGSLFSNMTIPGKIVGTPDYMAP
ERLRGTPASESTDIYALGVILYQMLTLSFPYRKKKGQKISLRHQISFPEE
IAPHREIPPFLSQVVMRALAADPRERYRSVSALKADIEQHLQGSPEWTPK
IVLHTQDRECWKFHEPILLSKYFPMLEVSPALWYSLAISKIESFSEVRLE
YTLLRKGLEEGFGILLPPSEGVDHGDFYHGYGFWLHIKENILSVSLVKNG
LEIQKTSRHIDGNKEKFFIAFEKQNHRLSLIIDNIVWTIHMDYLPARGGR
IGVIIQDVADVCGNIVVLESSGSLQVSCLAVPDAFLNEKLYERAITFYRR
IVESFPGRKEGYEAQFRIGIALLEKASENSDSEGFIQALEEFSTLHNSVA
APLEYLGKALVYQRLGEYNEEVKSLLLALKRYCQRPEISRVRDHVVYRLH
EALYSNHRISLVFMLLALHVAPESINASEEEHFLQNLHGKIQDTLFCNLD
ISPVDFRSSKMELLLSYWSGFTPFLLGLFQRSWDLKDYRALADIFYTAAD
LGNKEFIEEYSGILRENIRTTTFSKEIVEILPDQLLCFLSGLEALTLQES
IEKVFDGIENLDPVLILYLFDLFAKDALIHGRGEEILKAIALVEKYISPQ
QRYRYLLPYEVLSYLWMKDANKVYDLLSSYDESSWIDDSSHAFVLYGYWL
ALAEDSSLAYLHLSGCREDSVFPRALIGVFCSPLGICEEQLSYQERRQLL
LQKFIFFHCLGNSEERDKCRTAYDSKERSL
>CCA00986 RNA polymerase sigma factor, sigma-54 family
MFQQHQKLSQNYLPSLRMQQGLQMLQSPITELASYVLQQIIHNPFFDLSS
LEDEEWSVCSSLPSVDAAYSRPESLFSHLLTQVQQTFDRSEDLLIAQHII
GNLSDQGLFLSSTEELSLQLEMPLETIHTVWETIQHFHPLGIASPSLQDY
WLLHLEGSAHALAYKIIKEHYSLLINCDFLRIAKKCRCSPSDIRKVLKTA
LAKIPWCPAEGYASLSHVQPALPDVYVTKKHQIWEIQISSRGLPPIKLNS
EVFHIYEQLPKEEKKNLTQQILSAKWLIKNLRKREQTLFSIVETILPHQE
SFLLGKSSSPKALSVKSLSEELSFHESTIFRAIENKTLAAPIGIIPLKQL
FPRAAGDNDSQSKETILQWIHEWIASETTPLSDADISERISQQGIQCARR
TVAKYRTQLKILPANKRKAYFEM
>CCA00931 helicase, Snf2/Rad54 family
MVLNALAGFRQTAIDYLATNRQDIALDFSGDCYNIRIPDEDSPDGNWLST
LRFSDIDNLTFASCSCPDGDCCVHLMTAFFSAYDAHGWLPLHHKFDISFW
HALFLKLFLEEAQLHADGDRQYSITSPHITLEISALSSEAFTEWLPIIHQ
TPEPKTYTKKTFPQSVLYRVAKQFFFFSEAGARLDLIENSQGFPTQFAMQ
WEGISLKGEILDFSTLENLFPKINFSQTSLPGNYSDFSITKVRVAPEESK
IYFTVEPIAHDHANQPITEIGSIGYIAGSQQVILPSKETFVSIYLISLLP
ETLKKQILALLHYDSEERPIRYSIHFLRDSSISFSAYLDTPGDLENGKLI
YPDFCYVPEKGLFTVVGLLSPQISFVIKADQVEEFLNNEGMLIREPGFEV
FTDRIPEGQLTYNITQQGVLLFHYNTGNPAAIDIHYGPWTYYSGQGFFLQ
RKADLEIQDGLIVEADHIPNFIMKHEVVLRTIPNFFAPTPPLKNLFFEVH
KETKGSGLYLKPVFQGLEEENCRLFGVFLYRENLGFNLLPTPLQPLCSLP
RKIPAEQVPDFINQNSQNDKLVFTDPQLCPPVTFELVILSITRPHPSSPL
HLHLELKTNIGSIPLGIVLQALKNKKAFVFTKAGFLSFQHCLFQFLKQFI
SAQKCLIPENTVIATVTDIFKLDALAPLSTHEHISASASDLAFFSQLKAA
CLPPIPQSLFSTDHKLRPYQNSGLLWLWFLYNHRLSGLLCDEMGLGKTHQ
ATALLDIVFQSAEPTERPKFLIVCPTSVLPHWEHTLATHLPTVSIFAFHG
PNKPENLPPTDVIITSYGTLRQNYAKFYKVSFTVTVFDEIHMAKNKNSQI
HKILCRLDSQMKLGLTGTPIENNLLEFKGLLDIILPNYLPSDALFKKLFT
KKTPAEIDDEIIPSQDLLLKLTRPFILRRTKKLVLPELPEKVESIIPCTL
SPEQKKLYQSTLKREKAQIQQLESPEEQTVNYLHVFALLNHLKQICNHPA
IFFKNPDKYREHESGKWNAFVRLLHESLSSGYKVVVFSQYIHMIRIIMLY
LEEIGVKYASIQGKSLNRKEEIEYFTTDPECRVFVGSLLAAGTGINLTAG
NVVIMYDRWWNPAKENQALDRVHRIGQKNTVFIYKLMTEDTLEERIHYLI
EKKIRLLDKVISTQNSNILHMLNREDLITILSYKDERNGVDDTANIPNDE
ENSIF
>CCA00618 protein kinase, putative
MEGEQDIGVEFLGDYKILCYLRKGLWCQDILAEHRFIKKRYILKLLCSEL
SSSEAFMTAFHEAIIKLATIRHPGIISIENVSQAEGQYFLVTEEKEVPTL
SLAQYLSSCSQGLSELEAKDLICQLAEILDYAHANRLIHGGLSLDSVHID
LTGQSPKVFLPELGFSFLLKDQYTQSLLRDSSEKSSFDKLKQILLFQAPE
TALGTVAEDVYAFGVIVYFLLFRQLPQGAFPLPSEAFPEYVYDWDRLIQS
CLSYAVEKRPKKLAPLLVKKTLGEQFLAAKIQCSEEDLREIEEEPQVPSV
ANILQKVEDKIIEETSDHLEFVLVEAKSIDEAMNTSVDSKEEVVAEDESY
SNALQSLLIREPVVSRYVEEEKEEVKPQPLFTEMVFIEGGKFLRGSREGQ
RDEHPVHEIFLHSFFLDIHPVTNEQFVRYLECSGSEQDKYYNELIRLKDS
RIQRRSGKLVIEPGYAKHPVVGVTWYGASGYASWVGKRLPTEAEWEIASC
GGVTQLRYPCGEEIDKSQANFFSSDTTPVMSYPANPYGLYDMAGNVYEWC
EDWYGYDFYEISAQESHAPQGPAQGVYRVLRGGCWKSLKDDLRCAHRHRN
NPGAVNSTYGFRCAKGVK
>CCA00630 transcriptional regulator, putative
MAKIPYAILEKGSLLLASPDTDQGVFARSVILLCEHSLNGSFGLILNKTL
GLEISDDIFTFDKVSNNNIRFCMGGPLQANQMMLLHSCSEISEQTLEICP
SVYLGGDLSFLQEIAASESGPTINLCFGYSGWQAGQLEKEFLEGNWFLAP
ASYEYVFSDNPDNLWSRILKDLGGKYASLSTVPENLLLN
>CCA00429 RNA polymerase sigma factor, sigma-70 family
MKTQNTQNISEIWELYWETQEIEYRDTLIDFYLHLVKCVVHRLISGMPSH
VKTEDLYASGVEGLVRAVERFDPEKSRRFEGYALFLIKAAIIDDLRKQDW
VPRSVHQKANKLSEAMDTLRQSLGREPTDGDLCEYFQISQQELSGWFISA
RPALIISLNEERPSLSDGESGVALEERIPDERAETGYDIVDKKEFSSFLA
NAIEGLEEKERKVMALYYYEELVLKEIGKILGVSESRVSQIHSKALIKLR
AALSAFI
>CCA00212 ATP cone domain protein
MQCPFCNHGELKVIDSRNAPEANAIKRRRECLNCGQRFTTFETVELTLQV
LKRDGRYENFQESKLINGLNAASSHTRIGQDQVHAIASNVKSELLGKQNR
EISTKEIGELVMKYLKKADMIAYIRFACVYRRFKDVGELMEVLLSATPDM
EK
>CCA00965 conserved hypothetical protein
MKQTFTKRILLFLFLVIPIPLVLNLVVLSLFSFSAAKNNLMENLHTHVTN
FSLEFEKKLTIHKIFLKRLANTLALKAYASSAEDFYSQAYNEMFALSDTD
FSLCLIPLIDGNIKTKNPHDPFIHYLKSHPEIKKKLSMSSGKACIITISS
DTYQNYPKNYLVITEDIEVWNAPTSAGLLVSFYPMDFLQKDLFKSLHLKN
EAICLLNKYGEVLFASDPKFSSEVFSVDIPDLPKITARKQALAVTTAPKI
LREHNLISIKIKNKSYLGIVLNKLPIQGTYTLSIIPLSWFINKAIHLPLN
VIFFYSLAFLFMGWVLTKINKRLNQPIQELTTCMEAAWRGNHNIRYEPQP
YGYEINELGNIFNCTLLLLLNSREKAEIEYASGDQLQKELAILASLQQTL
LSPTFPEFPNISFISKHLQGIQLSGHFYGWKTSFPEQTLIGVIGLAGDIG
LPSYLYALSARSLFLAYANLSSSLEKISSDTFDAFGKTTEGDEATVSMTF
IRYDSIDSTLSILSVGETPPIAFLKRQETFSRLASPTKHKIEPGDILVCI
TGNYELTEYLMRLPIEELIKDPLAPLNSENFIETLTEMLNKETQSQIDGT
LSFLSFS
>CCA00240 exoribonuclease, VacB/Rnb family
MVKKIRKRKPQGFRRSSKQILISGVLFVHAKKGFGFVTPDHPEEYPFDIF
IPARDLKGALDGDHVIVSLFPNSKEGEKRKGMIHQVVSRGKTVLVGTITS
IIDGTTALVCVNALGPDIPVKAKLLPKRSYKLGDRLLLSTPAWKEKPESK
EPPPLEMLEFIGNISNAKADFPCIKAEYAIEEEFPEAVIEETSHFSQKHI
NQALRSRKDLRDLLCFTIDSITAKDFDDAVSLTYDNNDNYILGVHIADVS
HYVTPHSALDQEASKRCNSIYFPGKVIPMLPSALSDNLCSLKPNVDRLAV
SVFMTFTKEGHLSDYEVFRSVIRSKYRMTYDEVDEIVENKQPHPISKTLL
AMAELSEKFADIREKRGCIRLVLPSFTMALDNLQEPVALIETRQTLSHKL
IEEFMLKANEVIAYHISHQGVTLPFRIHESPNDESLLSFQEMAKGMGFDI
IMTPAQEPDYQYLLQESSAGHPLEAILHSQFVRSMKTASYSTENKGHYGL
KLDFYTHFTSPIRRYIDLVVHRLLFHPMSIEETRLEHIVRACSTQERIAA
KAEFAFENLKKTRFLDKFLKEQPETIYKGFIITTTPEGISFTVPEFCQEG
FIPAAQLPKEYSLKKKTSPDDLPSKMRPGATIEVKLSEVNLLNQAITWSL
VTKTPKKSEKKSSNPEKKPRTRRKRKTE
>CCA00543 argR, arginine repressor
MKKNVALDKALKEILNEEGASTQEEICEKLSSLGIATTQSSVSRWLKKVH
AIKIPGDKGARYSLPPSIDDSSIKHLVFSIRHNSSLIVIRTAPGSASWIA
SLIDNKFAESILGTLAGDDTIFITPITESTISLTAKDIENFLLVFSE
>CCA00918 helZ, helicase, Snf2 family
MLNFRKLRRDFTANILQDGKELFDQGAVINAKILSMNGESVCIGAQVRGL
YDNVYECEIEVDRSKSDTIDSNCDCSYNYDCQHIVALLFYLEKYFNEMVV
AYSQEADLETNQEINEEVKKELQETFVAAASREEERKDRAHQKEILSEYV
HAANALSANPFFLPQEYLEKNSAELAVLFVASNDEVFRPNQHVEFQLVLR
LPGRSKPFYISNIKTFLEGVLYQEPIILNGRRFFFTMQSFNVSDRKLIDL
LIRYVRYANQAPEEKLLKSAYLTLTSLGVILAKMYEHQMADRGGGQVGEK
ESFSGMFCGNLEEPLYWSASAAKMKFDLDFFDTPYKALLMTPLILVDDET
LQPEQAILLESNVPGIIHNNVYHHFAPQIRRAHLRSFLRLRDITIPEALF
GSFRENALPVFKEYAEVSNVEVLNPFVTLPYVEDIRGVCNISYLDGELEA
KLHFIYDSLTIPAASFALKYQDVHAFIRDDGILARNLVEERKITEEVFSG
FIYDERDGAFHVKSEKKIVEFMTETIPNNQHRITFNCPETLSDQFIYDET
VFDLSFKESSEVNTYEAELKVNGLLKGISLDLLWDCISAKKRFLELPKKG
RNVKTPRRGRASSTTKLPCILVLDLEKISPVVQIFNEIGFKVLDNFVEKC
PLWSLTGISPEIFKGLPVNFTMTDKLAEIQKQIRGEVAFDFQAVPEQIQA
TLRSYQTEGIHWLERLRKMHLNGILADDMGLGKTLQAIIAITQSRLEKGK
GCSLIVCPTSLVYNWKEEFRKFNPEFKTMIVDGIPSHRRRQLAALSEYDV
AITSYNLLQKDIDTYKDFVFDYVVLDEAHHIKNRTTRNAKSVKMIRSGHR
LILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVGKYIRTGNYMGNKTDN
MVALKKKVAPFILRRMKEDVLEDLPPVSEILYHCHLTDSQKELYHSYAAS
AKKELSRLVKQEGFDRIHIHVLATLTRLKQICCHPAIFAKDVPEPGDSAK
YDLLMDLLSSLVETGHKTVLFSQYTKMLSIIKKDLEARGVRFVYLDGSTK
NRLELVNQFNEDPGLLVFLISLKAGGTGLNLVGADTVIHYDMWWNPAVEN
QATDRVHRIGQNRSVSSYKLVTLNTIEEKILSLQNRKKSLVKKVINSDDE
VVSKLTWEEVLELLQI
>CCA00243 hrcA, heat-inducible transcription repressor HrcA
MSRSWISKRESKILYILLTTTELYLKTGHPVGSKTLKEYEGSNLSTATIR
NYFSELEAEGFLKKNHISGGRIPTDLAFRYYVDHCADCSQDELPESTINL
LNQLPEESQNIVKDLQKASELLGEALQLPTCFSSPRFDNDSVTNIQLSLV
DEQRAVVILSTEFGQIFTDTLWLSEASNPASLKRIEIFLQSYVRKQSPME
ILSQKEEDIGMTLYNEVVVRYLTRYCNFSEEDLYQTGLSKLLRYESFKDP
DMLALGLSFFENRRHMCKLLDIGMHRDRPTAFIGNELSDIFRTPNPQCAV
ITIPYYMNRTPLGAFGVLGPVNLPYKEIFKTLTIFADKIKASLTQSFYKF
KLSFRRPCPSDPTLSKEPTLLARYSSIKLLPPKETS
>CCA00877 mfd, transcription-repair coupling factor
MAMDFDPVNLNLPILSEITNASIPLLIENIRPGARGFLAAKFFRERDESV
VMITTRARIDDLFEDLSSFLGCAPVEFPSSEIDLSPKLVNIDAVGKRDKV
LYELYEKKAPLFCITTLKALLEKTRSPKDTGHQHLDLQVGDVLDPEMMID
LCKNLGYRHETLASDKGEFAYRGGIIDIFPLSSQEPFRIEFWGEKIISIR
PFNPSDQLSTGKVSKISISPATKDSGKEALSHCLLDYFKTPPVFIFDNLS
MLEDDFSEISGTLSSLPNRFLSITDLCERALQSPTIFFEEKSFPNVRNLK
NNEVNIEVFHRDVKASRLVVPFVYPNETIDDQENPLLGFLQKLQEYVPHK
GQPFNVALYNTKAKSLKEARALVETLSGNSIHIYEKPGNLSTSFALVEER
FAAISLAEFSATKVLRRQKQRNYFSVTTEEVFVPIPGETVVHLHNGIGKF
IGIEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGASDKAPDL
HNLNGSKWRRSRDLSEKSLVLYAEKLLQLEAQRSTIPSFIYPPHGEEVIK
FAENFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAA
VKAVCDGHRQVIVMVPTTILANQHYETFSQRMAGLPINIAVLSRFSERKS
MKKIFEDTAKGDIDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDF
LKERYPKVDCLTVSATPIPRTLYMSLSGARDLSLITMPPLDRLPVSTFVL
EHNEETLSAALRHELLRGGQAYVIHNRIESIFRLGNTIRTLIPEARIAVA
HGQMSPDELASIFQKFKDQEINILVATALIENGIDIPNANTILVDQADKF
GMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLEALNKQEYGGG
MKIALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNTTP
LLFNDDVKIEFPYKSRIPDTYIDLASIRIEFYQKIGGAEDAEQLELIKEE
MRDRFGPLPEEVLWLFALAQVRLFALHHNISSIKGTGNALYIQQCHGKTE
QIKKTLPYSLSPTPELLISEVLASIEKAFPLKTPR
>CCA00466 nusA, N utilization substance protein A
MNKDLVAIFDYMEKEKGIQRPVIIGAIESALKIAAKKTLRDDANVSVNIN
PRTGDIEVFCEKEIVEVCENPSKEIPLDKAREYDPECQIGQYMDVPFVSE
HFGRIAAHAARQIIGQKLRHAERDVIYEEYRHRVNEILSGVVKRFAKGSN
LIIDLGKVEGLLPARCYPKTEKHKVGDKIYALLQEVQESENGGAEVILSR
SHPEFVKQLFLQEVPELEEGFVEIVKIAREAGYRTKLAVSSSDPKTDPVG
AFVGMRGSRVKNIIRELNDEKIDIVNYSPVTTELLQNLLCPIEIQKIAIL
EDDKVIAIVVHDADYATVIGKRGINARLISQILDYELEVQRMSEYNKLLE
IQRLQLAEFDNPQLDEPLDMEGISKLVVQNLVHAGYDTIRKVLLASANDL
ASVPGISLELAYKILEQVSKYGEGKVDEKPKIED
>CCA00696 nusG, transcription antitermination protein NusG
MFKWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIVLPIENVMEVKKG
EHKVVEKFIWPGYLLIKMHLTDESWLYVKNNPGVVEFLGGGVPLALSEDE
VRNILKDIEEKKAGVVQKHKFDVGSRVKINDGVFVNFIGVVSEVFHDKGR
LSVMVSIFGRETRVDDLEFWQVEEVAPEQESE
>CCA00056 parB, chromosome partioning protein, ParB family
MSGVINKDTIIEVAVDSIRVSPFQPRRVFSEAELQELVASLQSVGLIHPP
VVREIRSGDKVLYYELIAGERRWRALQLAGYTTIPVVLKQVIADDIAAEA
TLIENIQRVNLSPMEMAEAFKKLINVFGLTQDKVALRVGKKRSTVANYLR
LFSLSETIQKSLYLGEITLGHAKVILTLEDPKLREILAERIISKRLAVRE
AEQEAKKLLSGESISLSSKEHVKTPSTVSYQDMQERLSQSLGYKVTVKSQ
GSHHSVSLHVHDEEQLKQLEEWLLKKA
>CCA00039 pkn5, serine/threonine-protein kinase
MDCQSEMLSHNQVIGAYHIKKLLSKKEGSTVYQGVHPDTLQPAAIKVLAT
PLVTDTPRVHNFLKEARIIEQISHPNIVKLYQYGQCREGLYIAMEYIQGV
SLRHYILSQLIPLSRAIDIILHIAQAIEYLHSRGILHRDIKPENILITSQ
GNIKLIDFGLAISSIDKDARPLYLGTPSYMSPEQRQGDKISELSEIYSLG
LIAYELILGNLALGKVVLSLIPDRVSKILAKALQPSPTDRYASMKEFIID
LHRYRHGEDLQKDLRNKDHTAMVNDQLYHQRFWLSPLEIVVPEYLAVSIH
EHGYPTHPHVYYEAYMSGDTFRLWFCYSLSGNPTLVLTVMKSFVSQWGHE
ENIRSTIRKMHSELMRINVPINGKGISLFCVTIPKEKKELSWIACGKTSF
RLKKQGKVPEIFTTSSAGLGKISSLQIQETKVAWEIGDGAVLHTLQADDS
MSSLHSPLFTELKDRGQTAIFCPIESVRYGIEENHDGNLCPSTLISLKRI
R
>CCA00130 rho, transcription termination factor Rho
MKEERSSEVLPKVKENKKHTCPVLQEKSFAGECAVVTDTVDENQNVTITK
IAKLQRMGIEELNVLARQYGVKNIGSLTKSQVVFEIVKAKSERSDELLIG
EGVLEVLPDGFGFLRSPTYNYLPSAEDIYVSPAQIRRFDLKKGDTIIGTI
RSPKEKEKYFALLKVDKINGSTPDKAKERVLFENLTPLYPNERIVMEMGK
EHLAERVLDLTAPIGKGQRGLIVAPPRSGKTVILQSIAHAIAVNNPDIVL
IVLLIDERPEEVTDMIRQVRGEVVASTFDEQPERHIQVAEMVIEKARRLV
EHGKDVVILLDSITRLARAYNTVQPHSGKILTGGVDASALHKPKKFFGAA
RNIEGGGSLTILATALIDTGSRMDEVIFEEFKGTGNMELVLDRRLSDRRT
YPAIDLIKSGTRKEELLYHPSELEKVYLFRQAIADLTAIDAMHLLLGRLK
KTNSNAEFLLSLKE
>CCA00342 rnc, ribonuclease III
MNNLINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETVTITEDSERLEFL
GDAVLCLIVTEHLFLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEH
LLIGKGERIQNERGRTSAYANLFEAVLGAVYLDGGLAPARQITVPLLPSK
KDILPLMLGNPKNRLQQLTQKQLRTLPVYQCTPWTSQQGVPGYHIRVIVN
DEVWGEGCALSKKEAEKLAAQKALDAHDYENKNTMDL
>CCA00114 rpoA, DNA-directed RNA polymerase, alpha subunit
MSTKKKAQSVVLGKEKGMSDNSQNLLYDKFELPESVKMMAVEGSGGSVDK
QASFVAEPLERGMGHTLGNALRRALLIGLEAPAIISFSMTGVLHEYMAIE
GIVEDVTNIVLNLKGALLKKYPFQDSEDGRCTQLLKSTISVDASDLAACG
GQKSITLADLLQEGGFESVNPDHVIFTVTQPMQLEIALRVAFGRGYSTSE
RIVLEDKGVNEIVLDAAFSPVVLVNYFVEDTRVGQDTDFDRLILHVETDG
RVSPKEALAFSTQILTKHFSIFEKMDEKKIVFEEAISIEKENKDDILHKL
VLGINEIELSVRSTNCLSNANIETIGELVIMPEPRLLQFRNFGKKSLCEI
KNKLKEMKLELGMDLSQFGVGLDNVKEKMKSYAEKIRSKNVKG
>CCA00691 rpoB, DNA-directed RNA polymerase, beta subunit
MFKCPERVSVKKKEDILDLPNLIEIQIKSYKQFLQIGKLAEERDNVGLEE
VFREIFPIKSYNEATILEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFR
LTDETGIKEEEVYMGTIPIMTDKGTFIINGAERVIVSQVHRSPGINFEQE
KHSKGNILFSFRIIPYRGSWLEAIFDINDLIYIHIDRKKRRRKILAMTFI
RALGYSSDADIIEEFFQIEERSLKSEKDFTLLVGKILADNVLDESSSLVY
GKAGEKLSTAMLKRMLDADISTLKIAVEADENHPIIKMLAKDPTDSYEAA
LKDFYRRLRPGEPATLANARSTIMRLFFDSKRYNLGRVGRYKLNRKLGFP
MDEETLSQVTLRKEDVIGALKYLIRLKMGDERASIDDIDHLANRRVRSVG
ELIQNQCRSGLARMEKIVRERMNLFDFSSDTLIPGKIISAKGLASVLKDF
FGRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVRDVHASHY
GRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRIVRDGVVTDEIEY
MTADVEEECVIAQASAALDEYNMFVDPVCWARCRGEAFEADTSTVTHMDV
SPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPIVGTGLE
ARAAKDSGAIVVAEEDGVVDYVDGYKVVIAPKHNPTLKRTYDLKKFLRSN
SGTCINQRPLCSVGDVIVKGDVIADGPATDQGELALGKNILVAFMPWYGY
NFEDAIIISEKLIKQDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSEE
VLANLGEDGIIRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKA
ADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKG
YKNQVSVLKTEYREKLGALLLNEKAPASIIHRRTADILVQEGTVFDQETI
ELLEQESLVDLLMPPCEMYDVLKGLLSDYETSLQRLEVNYKTEVEHIREG
DADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYL
ANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIHVKTPVFEGFPE
SRIWDMMIEQGLPADGKSYLYDGKTGERFDNTVVIGYIYMLKLSHLIADK
IHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT
VKSDDVSGRTRIYESIVKGENLLKSGTPESFNVLIKEMQGLGLDVRPMVV
DA
>CCA00690 rpoC, DNA-directed RNA polymerase, beta` subunit
MFGEGSRDNATLSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRT
FKPEKGGLFCEKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVR
RERMAHIELAVPIVHIWFFKTTPSRIGNVLGMTASDLERIIYYEEYVVID
PGKTDLNKKQLLNDAQYREVVEKWGKDAFVAKMGGEAIYDLLKSEDLQSL
LKELKDRLRKTKSQQARMKLAKRLKIIEGFVSSSNHPEWMVLKSVPVVPP
DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRV
DYSGRSVIIVGPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSA
KKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGIQAFEPVLIEGKAI
RVHPLVCAAFNADFDGDQMAVHVPLSIEAQLEAKVLMMAPDNIFLPSSGK
PVATPSKDMTLGIYYLMADPTYFPEDHGGKIKIFRDVTEVLRALYTGGFL
DERINNRCDETGRGIHIHEKIKVRIDGQIIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLK
DVRIPEIKSEILKEAYDKVAVVKKQYDDGIITDGERHSKTISIWTEVSEL
LSDALYVEISKQAKSKHNPLFLMIDSGARGNKSQLKQLGALRGLMAKPNG
AIIESPITSNFREGLTVLEYSISSHGARKGLADTALKTADSGYLTRRLVD
VAQDVIITEKDCGTLNHIEISAIRQGSEELLPLKDRIYGRTVSEDIYQPG
DKSKLLAKNGDVVTSAQAELIDDAGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVT
DNDGILVYMDLRVVVGQDGNHLVLNKKGAIHVVRDEGRSLEEYKKLLSTK
SIESLETYPVELGVKILVGDGEKVSSGQRIAEVELHNIPIICDKPGFVKY
EDLVEGISTEKVVNKNTGLVELIVKQHRGELHPQIAIYSDAGLTELVGTY
AIPSGAIISVEENQKVDPGMLLARLPRGAIKTKDITGGLPRVAELVEARK
PEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLIPLTKHLIVQ
RGDNVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN
DKHIEIIVRQMLQKVRITDPGDTTLLFGEEVNKKEFYEENRRTEEDGGKP
AQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKE
NVIMGHMIPGGTGFDTHKRIKQYLEKEQEDLVFDFESESECAC
>CCA01001 rpoD, RNA polymerase sigma factor, sigma-70 family
MLMNTQNGQATEAAHEEEAQKKLEELVSLAKDQGFITYEEINEILPMSFD
TPEQIDQVLIFLTGMDIQVLNQADVERQKERKKEAKELEGLAKRTEGTPD
DPVRMYLKEMGTVPLLTREEEVEISKRIEKAQVQIERIILRFRYSSKEAI
SIAQYLINGKERFDKIISEKEVEDKAHFLKLLPKLVTLLKEEDLYLESLL
LALKQGNLSKQEIAKLNDNLEKCRIRTQAYLRCFHCRHNVTEDFGEVVFK
AYDSFLQLEQQINDLKVRAERNKFAAAKLDAAKRRLHKREVAAGRTLEEF
KKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEG
NMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIE
TINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQHPISLQ
AEVGEGGESSFGDFLEDTGVESPAEATGYSMLKDKMKEVLKTLTDRERFV
LIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLR
AFLDLLEEEKTTSGKAKNFKGK
>CCA01007 tctD, transcriptional regulator
MLTDKIILFVTEDSNISLQLKEFAQNVEYKIIVASALTSTSEADLIFCEY
LLLPEDMFSNKIPSETDLVVLFDAFEEEAVVKILNNGASGYLLRPITVKV
IDAVIRAFLRNHRHFEHAIPESISFGDRTFHLLSLSIDSPLGTVHLTPSE
AGILKKLLMNRGQLCLRKHLLDEIKGGSKEIIARNVDVHIASLRKKLGAY
GSKISTIRGVGYLFSENDNLTNSPSSEPTATHP
>CCA00562 trpR, trp operon repressor
MAQESNENGWGDFLELCSKIKTPEAFHDFFALFLTFGERESMASRFLIVQ
ALLAEQLTQREIAQKYGVSIAQITRGSNALKAIDPKFKEFLKNLNRKYGN
Q
>CCA00167 yhhY, acetyltransferase, GNAT family
MTENRDTGVPGLEIRYTLPSDAVYMQQWLNDPKILRGFPLKTEAEIRDSV
NFWVGFYRYHSSLTAVYEGEVAGVATLILNPYIKVSHHSLISIIVGEPYR
NKGIGTALLNNLCHLAKSRFHLEILYLEVYEENPAIELYKRFGFIEVGRQ
RRFYKDEIGYLAKITMEKDL