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# Treponema pallidum subsp. pallidum str. Nichols, Nichols

>gid:10405  TP0019  transcription elongation factor (greA)
MVSGRGLVVTAKMLNAKKKELQDLLDVRIPENSREIGRALELGDLRENAE
YKAAREEQTRLNNMVTRLQEEIERAQVFDPTTVVAGRVSFGTVISLKNHT
SGEDETYTILGPWESAPERGIISYMSPLGSNLLNRKTGEQLAFTVGEHEK
VYEILSISAAEI
>gid:10473  TP0082  formate hydrogenlyase transcriptional activator (fhlA)
MHRLREILPAHLPIRKETSEHLSTRVSCARLYPIXNARKRIRKTNTIPCT
RHAHRLHAENCTDMPFSSILGPHELFGLSCTRALPPAAEKSLEMILDALY
EIARYELAVVLSFESSQILRVRKARGPLYTPRLQHHTIDLTKRQDLARIL
SQKSPYLFDPTLAHTDTYTELIPMPQNHSCLIAPLYIDDTPIGMLTLDHR
LCEQFTPDVVRFITTLSKLISLAVAQTDASETLSQKSHALLTERNALLAP
QSPAFKNMIGTSPAWTRTLDAIKLVAASDLPVLVCGETGTGKELVARTVH
QLSTRSDKPFVPVNCSALVHSLAESELFGHEKGAFSGAVGTHRGRFELAH
GGTLFLDEVGDLPLELQPKLLRVLQDGVFERVGGERSVSVSVRIIAATNI
NLSEAVTQGKFREDLLYRLDVFPLSLPPLRERAEDVALLAEHFIQKIKTR
PGFERTQLSPSAFKKIFSLTFPGNVRELRNLLERAALLARGDTIGAEHLV
CRTPESGTQTTVYPREHTEVSESVQPAIPLCIRDSSCMVRCTQGKKEETT
LVVNFHQAQRAAIQAALDASNGKIYGANGAAEILGLKPSTLQSKMKKLGL
>gid:10483  TP0092  RNA polymerase sigma-24 factor (rpoE)
MYEQLVPVLYRVAYNVVREEDIAEGLCHDAFIAMTEKRMEFPSLSDAKYW
LIRVVKNASLNYAKRRVRERHSCEQASREHVCEPDTGELRLLRIETIEQV
RAALDRLPEHLRVVLQLREYGDLNYKEIGRILGISEGNVKVRVFRARERL
AKYLGETDAYLS
>gid:10484  TP0093  T. pallidum predicted coding region TP0093
MRTCPDCAAWCAYVDGEGSQLQRREMCAHLQGCTHCATCVAHYRAMRSLV
KHADRVSSRDFTMAFPYLRVRHRVASCMPRPWWQARSSPLSAAGPVRAAA
LAVAVASLCVCTLLLTHIVERRPVSRAGEASFTPIVPMRVRAPVGYARGV
KVFGPAVSANSNVLRKPAAVFTVCAFAQLYGSDPAYEMETVPVRLSVIPV
PSYVLNASKAQFFSP
>gid:10505  TP0111  RNA polymerase sigma-54 factor (rpoN)
MQQLVQQQRLVLNQRLVHGLCLLQLSRGDLKTEVLRAVQRNPLLEIRPSS
ARRTGKACYLSLGDRRERMRARDRFQQLLENQPDKQVDNIRAVLREQVFY
QKHEAIVLDLACAFIQMLDDHGFFSISPAIFQNMCGSMPTALQEKIPQAI
ALIQRLEPQGCAVFNFKESLAVQARLRFERFSDPLYRCVINLLTHHSELL
FCSDNMCDGRVSVHALTTQINSMGLCVQKVSSNDVKDILLLIKELHPFPG
KCVSNAQRADTNMLLEPDVLITKTAHGFVTQINCTGIPTVVFRNDYCMHS
KAAEKNHALKACMHDALSLVSMLSYRERTLLDIAKTIVHYQCGFFDHGPA
KLTPLRMTDVAHRTGLSVSTVSRIVRDKWLQYGSQHFSLRYFFSPRVLST
EEYRDRSSLGQNYPSSPHSKVSVKYRISRLIQEVRTQRISLSDRRIAQLL
GEQGIKCARRTVNKYRSELRTCSSS
>gid:10562  TP0167  cation-activated repressor protein (troR)
MSLVSDIAAENYLKTVVKALARSRRERVGTGELSRLLHVTPGTISTMVKR
LEKGGYVQRTHRLGCTLTRKGAVFGSAVLRKHRLLESFLSQVLCLEAGVV
HKEAEMLEHACSDELIDVIDRYLQYPTRDPHGQPIPRKDTLLDLYVEDDV
PGV
>gid:10608  TP0212  DNA-directed RNA polymerase, alpha subunit (rpoA)
MPRRNLLKGFKRPKVLEFLSENSSECYGKFTASPFETGFGTTVGNCLRRV
LLSSIQGYAVTGVRITSFDADGVAHFISSEFEQIPHVREDTLEILNNFKR
LRFLLPQGAESSTFTYEFRGAVSLTGKDFAKKFQLEVLSQDLLIMEMMDG
AHVEVELHVEFGRGYVPAESHDRYADLVGVIPVDAIFSPVLRVRYDIQSC
RVGQRGDYDQLSLEVWTDGTVRPEDAIAEAAKIIKEHFTVFVNFDETALD
LEDEPEEDDPAVLELLNTKIADVDFSVRARNCLLTMGIKTLGELTRISEQ
TLANTRNVGKKSLSEIQGKLQEYNLRLGMADYNHVGVVSRLMRQKEEIDE
A
>gid:10613  TP0218  sigma factor SigB regulation protein, putative
MIRRRLAIVKAGSFALLALFFSIFLRFLSPRYSFLGRFVSARDMALLISR
YEHLPELSSRDRALLVGFVFMIFALALTEIQRYAHGRIRLVVYRQTETRL
FEHFITLLRFCYRNEQLVAAFQEVLEYRADCAVLLMDTISNRVIYNSAAR
FVSDTRTYDLVLHKFSMDYTWHWSDGIYFFDDDLCLMSDRRRARGVCLSS
GELRLFIVCRFIRAVEREVISLLFKEFEEYLNRKRNMSTLLLYSHVSQEW
AMMARVQRALLPKALPHTKEICVGAFYQPLVNVSGDYYDVISIDEHLFLF
VIGDVSGKGLAASLVMGVVLSTIRIVEDKKNLPEILYAVDRAVKRMHLHD
KYTTLFLGLIDTAGMNIRYINASMESPLVFTQAGEAHEVYHLHSNCPVIG
IVDLPPIQIHERTLCPGDVMVMVSDGVVEVVNAQGVELRDADEYLHILER
HVGEHPAQMAQSIAALALNFSADRTTHDDMTIVTVQVKR
>gid:10614  TP0219  sigma factor SigG regulation protein, putative
MGLLFFSYLFVAVFVFDVFCLKFYTRRAYALLANIALVSGVASFFLSLSL
TAVLYGKMNIQAFLFKIALIFFTHASYLFSDMAYQLPYFKKNKRFFLCNT
TIHLFGILIIIFGMGPFKWNVLVSFKFYQNYLFSSVSGIVLYAALFFLII
PCVTFATLVKKAFMMKSIAYRQQLLFLAGAVALGFITWVIILFLFAVFPW
VFVFFPLGGVFIVLFSQWAFASTGIVSFKEVVFALSRFVLCTVGFSCTAG
YISVFWVHRFSTLDMQFVFGFFIVYALFALRDYAFDACSVFFGEIADSGQ
KLAAELQALDYTAKPAQVLRTFMDTLRMRIACRGLTFLLADEAGVFKTVY
SDFEEMATHEMEHQSLQYFFNQDVLMIRKSDPVIDHARQAIRTDILHFFD
ITHAQMIVLIREAQKLIGCLCFGMKNNGVEYSNHDQHVLEKLYSHFVLVS
YYLQNIAKQDVVITVDKELKMSHQIIESIQRKRDFIQDASVEVDSIAYSA
HQLGGDFVDFIKLSEKRYLLVIGDVSGKGLAASMSMVILKSVLSTFLRGL
CLEETAVFTTFIEKINRFIKDNLPCGTFFAGVFCILDLATHTLYYANCGI
PLMSMYVASYKNVVEIQGEGRVLGFVKDVMPFLRVRKVQLGQGDVVVFST
DGMVEVQNLQRERFGNERVDRILQESHGLPVSQITRTIYARLCEFMARDM
QDDVTVLAIKCLGPR
>gid:10637  TP0236  transcription antitermination protein (nusG)
MAKEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVK
DGKKRVVRRKFFPGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNA
KPQAVSADEARRILQKAGEIKGDRTPRIAQTFLVGQQVRIVEGPFATFSG
EVEEVMSERNKVRVAVTIFGRATPVELELVQVEAL
>gid:10642  TP0241  DNA-directed RNA polymerase, beta subunit (rpoB)
MSARVCKTHRVYVGRDVRNFMDIPDLIEIQLRSYDTFLHGARNTPSGADT
LISGTREELGLEDVFKTTFPIESSTGDMTLEYQSYSLDEKNIKFSEAECK
QKGLTYAIPLKALVDLRFNNTGEIRRKDIYMGDIPKMTERGTFIINGAER
VVVSQIHRSPGVVFSHEKDKEGREVFSSRIIPYRGSWLEFEIDQKKDLIY
AKLDKKRRILGTVFLRALHYETREQIIEAFYAIEKTPVCQDRAEYELLTG
KILARSVTVENEQGETRVLYKAGEKIHPHVIDDLLQNGICEVYIINLEAE
GSLRSAVVINCLEREEMKFSKSGAQDELSREEALCIVYSALRPSDPMTMD
AAEKDLQTMFFSPRRYDLGRVGRYKLNKKFRSDSPTTECTLTLDDIVNTM
KFLIRMYSGDAQEDDIDHLGNRRIRSVGELMTNTLKTAFLRMERIAKERM
SSKETETIKPQDLISIKPIMAAIKEFFGASQLSQFMDQVNPLAELTHKRR
LNALGPGGLSRERAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSMANYA
RVNGYGFLEVPYVRVRDGVVTKEIEYLDAMDEDRYYIGQDSTAVGPDGVI
RVDHVSCRHRGDYSTRSPKDIQYMDVSPKQIISVSASLIPFLEHDDANRA
LMGSNMQRQGVPLIFPEPPRVGTGMEEKCAYDSGVLVKAKQDGTVAYVSS
EKIVVCSAAASGEEQEVVYPLLKYQRTNQDTCYHQRPIVHVGDRVQVGDA
LADGPATYRGELALGRNILVGFVPWNGYNYEDAILISHRVVKEDMFTSVH
IKEFSTEVRETKLGSERMTNDIPNKSEKNLDNLDAEGIIRIGSKVRAGDV
LIGKITPKSESETTPEFRLLNSIFGEKAKEVRDSSLRVPHGVEGTVIDVQ
RLRRSEGDDLNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPE
EDMPYLDDGTPLDVCLNPLGVPSRMNIGQILESELGLAGLRLDEWYESPV
FQSPSNEQIGEKLMQAGFPTNSKVMLRDGRTGDYFQNPVFVGVIYFMKLA
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAANT
LQELLTIKSDDMHGRSKIYEAIVKGEASSPTGIPESFNVLVQELRGLALD
FTIYDAKGKQIPLTERDEEMTNKIGSKF
>gid:10643  TP0242  DNA-directed RNA polymerase, beta' subunit
MKDIRDFDSLQIKLASPDTIRAWSYGEVKKPETINYRTLRPEREGLFCER
IFGTTKEWECFCGKFKSIRYRGVICDRCGVEVTHFKVRRERMGHIELATP
VSHIWYYRCVPSRMGLLLDLQVIALRSVLYYEKYIVIEPGDTDLKKNQLL
TETEYNDAQERYGGGFTAGMGAEAIRTLLQNLDLDALVAQLREKMMEKGA
KSDKRLLRRIEIVENFRVSGNKPEWMILSVIPVIPPDLRPMVQLDGGRFA
TSDLNDLYRRVIHRNSRLIRLMELKAPDIIIRNEKRMLQEAVDALFDNSK
RKPAIKGASNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPEL
KLWQCGLPTKMALELFKPFIMKKLVEKEIVSNIKKAKMLVEQESPKVFSV
LDEVVKEHPVMLNRAPTLHRLGIQAFEPVLVEGKAIRLHPLVCKPFNADF
DGDQMAVHVPLTQAAQMECWTLMLSNRNLLDPANGRTIVYPSQDMVLGLY
YLTKERSLPEGARPRRFSSVEEVMMAAEKGVIGWQDQIQVRYHKCDGQLV
VTTAGRLVLNEEVPAEIPFVNETLDDKRIRKLIERVFKRQDSWLAVQMLD
ALKTIGYTYATFFGATLSMDDIIVPEQKVQMLEKANKEVLAIASQYRGGH
ITQEERYNRVVEVWSKTSEELTSLMMETLERDKDGFNTIYMMATSGARGS
RNQIRQLAGMRGLMAKPSGDIIELPIRSNFKEGLNVIEFFISTNGARKGL
ADTALKTADAGYLTRRLVDIAQDVVVNEEDCGTINGIEYRAVKSGDEIIE
SLAERIVGKYTLERVEHPITHELLLDVNEYIDDERAEKVEEAGVESVKLR
TVLTCESKRGVCVCCYGRNLARNKIVEIGEAVGIVAAQSIGQPGTQLTMR
TFHVGGTASSTTEENRITFKYPILVKSIEGVHVKMEDGSQLFTRRGTLFF
HKTLAEYQLQEGDSVQVRDRARVLKDEVLYHTTDGQTVYASVSGFARIID
RTVYLVGPEQKTEIRNGSNVVIKADEYVPPGKTVATFDPFTEPILAEQDG
FVRYEDIILGSTLIEEVNTETGMVERRITTLKTGIQLQPRVFISDESGNA
LGSYYLPEEARLMVEEGAQVKAGTVIVKLAKAIQKTSDITGGLPRVSELF
EARRPKNAAVLAQISGVVSFKGLFKGKRIVVVRDHYGKEYKHLVSMSRQL
LVRDGDTVEAGERLCDGCFDPHDILAILGENALQNYLMNEIRDVYRVQGV
SINDQHIGLVVRQMLRKTEVVSVGDTRFIYGQQVDKYRFHEENRRVEAEG
GQPAVARPMFQGITKAALNIDSFISAASFQETNKVLTNAAIAGSVDDLCG
LKENVIIGHLIPAGTGMRRYRQVKLFDKNKRDLDVQMEEVIRRRKLEEEA
LAQAVAGMEGEPEGEA
>gid:10655  TP0254  transcription termination factor Rho (rho)
MKVSVGTVVGQGELGLEEGIVGNQIVSEDSAADVGECDAYGGRKKLVIRS
RSRRRVVTPKALEVEKRPRRALRFKQNFCPEDAETSESSADVKGRARLLI
DDLTEMGMHALRDFAVQRGISQEDVVVMKKSDIIFHVLKNHTENGGVIFA
SGSLEILPDGYGFLRSPQNSYLPGSDDIYVSPSQIRLFNLKTGDTIYGQI
RSPKEGERFFAMLRVETVNFEEVAKVQDRVPFDSLTPLYPREKLNLETRT
EDISTRVMNLFCPIGKGQRALIVAPPRTGKTILMQKIANAITQNHPEVYL
IVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHVQIAEIVLERAKRLV
EHRKDVVILLDSITRLARAYNQTMPTSGKVLSGGVDSNALHKPKRFFGAA
RNVEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEINLDRRLSDRRL
FPAVSIKKSGTRKEELLLTEEEMQRIWVLRKVINPMDDAEIVELLIDKMR
KTKNNEAFLRSMNTGAFSS
>gid:10676  TP0271  chromosome partitioning protein (parB)
MGKDKLGKGIDALLQESSDRYDVRDSGGVQTVHYLDPTLLQANPHQARRT
FAQESLEELAASIREHGVIQPVLAEKNQDGSWVIIAGERRTRAAILAGLN
RIPVIVRTCDHEKKLAIALIENVQRENLNPLEEARAYQHIMDLGNLSHEE
LAQRVGKNRSTITNALRLLKLPPEVQQSLSSRTLSAGHARALLSLTDMQL
CVSVAQYVVTHALSVRAAEECVACLNRGGSLHDYAGARAHTAASSPSPGG
SATDITRLPPSSPSTDAQLDARIRNADIADIEQQLLEQLGTKVRISGNLQ
RGRIEITYFSQAELERLYGLLKAH
>gid:10750  TP0344  transcription-repair coupling factor (trcF)
MRGILHSWNELQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHI
VLVVPTEQDVAAVCTDLAHAAVPTRVLPWWGSLPYRPVSPNAHVFSHRVE
ALCALAQRDATAPCAFVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEIHT
LAAQLMQWGYARVDHVSACAEFSLRGEILDIAAAAQAADNTQAYRIVCDF
NTIERIHILAVSTCAVLQEVSACTLYAAKEILWSEERIAFLHQNLQKLSE
CPAHCVPCIEELTHRKTYEGEEMFYPLCFERPTCVLEYFRHSPSPPSVFY
LDYERQHNGARALQDECRNLYHKMQLAHEHVPARWYPQPEHIVLDFSAVC
ALHLHTVYFTHFFPQLPACESICLASDPARSFFGNIPYFKEELLRLSKDG
WHVFVFAESEQQALRIRALVKGCDVTVLPCALSAGFSIPALKILIVQEGE
IFGRRRKTPQSVQRARSTPIDTFVELNPGDYVVHAQYGIGLFKGIERIKT
AQSERDYVNLLYAQEETILIPIEQAHLVQRYIGNEGNKPHLDSLGSKSWE
TRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYAFEAAFPYEE
TDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQ
VVFLTPTTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAH
GDIDLIVGTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDC
LSLSATPIPRTLHMGMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATA
IRKELDREGQIFYLHNRIENLESVKCMLQKLVPELSICVAHSLMGSEELE
DIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADMYGVSQLYQLRG
RVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDME
IRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERLQHAPNEQRIETVIDL
NYRGFIPHTYIAADEIKMELYKKIAAAHTHEELERIRTETITRFGPIPEE
AAGLFTVAEIKVRCEKLAILSLKETHESLLIEFDKVCDTAFKKILRLVQT
SNDRVRLDAKQPNMLILTSDAIEIKEKGIFICEILKRLES
>gid:10787  TP0380  DNA repair helicase, putative
MTSVPKPLIIQADRSILLDVHAPEAVAARKALVSFAELEKSPEHLHSYRL
TPLSLWNAASAGFSPQMIAQTLTRFSRFTPPQTVLDWVVDIMSRYGKIRL
REDTTHSTLLRLQVRDAHIAREIAASKSLASHLSPTTACLQDGPLPTPDT
ARIAQPDTTPQVQGAQTGCSYDFLLPRLHRGTVKQLLLRHGWPVHDEVPL
REGTPLSLRLRISPASCPPPSTAYPCCHTPGTPSFVPRDYQWEAADAFVG
NRTQGSGFGVVVLPCGAGKTVVGLLVMGLLQTDTLILTPNSAAAQQWKRE
LCEKTDLDGTSIGIYSGECKEIRPVTIATYQILTWRAHADAPFSHFRLFM
ERSWGLIIYDEVHLLPAPLFRITAELQVVRRLGLTATLVREDGCAQDVFS
LVGPKRYDVPWKDLEARGWIARVRCVEVRVTMDRSLQYQYMTAPVRLRHR
LASENEAKVAVVQRLLRAHAGAPTLIIGQYVQQLLHLAHVLQVPLVSGRQ
TYAAREAIYQRFREGTLQVLVVSKVANCALDLPDASVAIQVSGTFGSRQE
EAQRLGRLLRPKICDAHFYSLVTEQTVEEDCALRRQRFLVEQGYTYETLR
VSEVHE
>gid:10838  TP0431  conserved hypothetical protein
MLLIDVGNSHVVFGIQGENGGRVCVRELFRLAPDARKTQDEYSLLIHALC
ERAGVGRASLRDAFISSVVPVLTKTIADAVAQISGVQPVVFGPWAYEHLP
VRIPEPVRAEIGTDLVANAVAAYVHFRSACVVVDCGTALTFTAVDGTGLI
QGVAIAPGLRTAVQSLHTGTAQLPLVPLALPDSVLGKDTTHAVQAGVVRG
TLFVIRAMIAQCQKELGCRCAAVITGGLSRLFSSEVDFPPIDAQLTLSGL
AHIARLVPTSLLPPATVSGSSGN
>gid:10865  TP0458  conserved hypothetical protein
MDQAEPCTLHGAPAPDLALLEAILFVEGVRLSYACLARKLGLSEQAVGEC
VARLGEALASGARGGGGLELHCNEQGVALLPAATVRERLATLYGKRSEGR
LSRAAMETLSIVAYAQPVTRAEIEAIRGVGADTMIRLLSERRLICEVGKK
DIPGKPAQYGTTEEFLTAFRLRSIADLPKLDEEEQRRFELTR
>gid:10868  TP0461  T. pallidum predicted coding region TP0461
MLQAAACGAMRGGVLEYTGKMEGMGVRVERVRCEQNLSKTAFARELGIGV
EELDAIERGTMPLSRDLTLLLCVVFAVNRLWLESGEGEPFSASAVSPQET
VQPEEEAREPPIPPPRWRG
>gid:10902  TP0493  RNA polymerase sigma-70 factor (rpoD)
MMELSRTPAVMRLLEYAREKKAITHDEVENILAHYGVETEELLHDVLDML
EQENIKVFSSEEEELEDEVFAGLKGPAADDGDGSFPLSTERVRDKLCDSS
RGARQNLLSNARNIALDDPVKLYLRDIGQEKLLTAEQEVMLSKRMEEGEG
IIKDIITQSGLLLPEFYHIGRSLSKKALAVLDPAESGRTRKEISEEMADR
RRLKQAYGEVLRSLYPEMRHYMAMKKRLDERGEPVTVLSSDEEVCKQRDK
LLSCLQKVDLQLEEIDRFSRKFLDTARKIREYKRRKDRHEKQLMIADLCD
MRKIGRGLAVPRQRAKLEETLGMSADCIQEIYTQIQKVTRRLRRIEYDFE
NTIDGILSMARAIHRGHVMLKKAKDKLINANLRLVVSIAKKYTNRGLLFF
DLVQEGNIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRV
PVHMIEQINKVTRESRQLLQKFGREPSDEEIAQQLCWTVEKVKQVKSVAR
EPISLETPIGEEEDSSLGDFVPDADVENPSRVTERVLLKEEVRSILSALP
AREHEVLRMRFGLDGDYSQTLEEVGLYFDVTRERIRQIEAKALKRLRHPR
HSRRLKDFLDS
>gid:10923  TP0511  transcription factor (carD)
MATRAWWSSLVFPLPLPTDFFPCLCYAGPMGKACAFRPHDHVVYPGQGVG
QVQEISEKTFKNETLLYYVIYLEESDMTVLIPVDKAQELGIRTIVKRKEA
ERALRFLSEDFDPSPLDWKMRYQVNLNLFKSGGILDNAAVVRSLYHRSKV
KELPIQERRLYDSAYRIFQDEMCFALGLRPPEVETLIHGYLEKAKENPVV
SGTVDVPG
>gid:11083  TP0665  T. pallidum predicted coding region TP0665
MTINTCRETGLHRALKDYFSPRGSRQEVELRGSICDVVHPDGTIVEVQTS
GLGRLEAKLKKLLPYHQVMVVYPVSRRLYIRMLNEDGSERHYRKSPKEGS
FFQIYREIGRLHDLLDHEHLSLHIVYIHSEVIKVDDRKGRSRYKKPRIVD
RKLLEVQSSEEFRNKGSLAQPLLSKLPEIFCCDDLAQTGTGVHCRYALRF
LRRNGMATPHSKRGRTKLYRKEPPGDNRSPPPWQEPHGEGLAEKLSPGPA
R
>gid:11108  TP0687  DNA recombinase (recG)
MLIGEIKEPVSVLKGTGKVVLAQLERLNISTIGDILSYWPRLWEDRTQEQ
MFSQWTLAHRLQVRVSVTAHCWFGFGKSKTLKLVVQDGQGCVAELLCFRR
NFLHFMFPVGSEAVVYGSFYEKDGLLESSSFDIEKIDCIEKKILPVYPLT
KGLKQMKLRMLICAAMDQWIGTVDSELPKPILEKYHLLTKRDVLLSMHTP
RTLDDVAKGKHSLIFEEFFSLQMTIGMRSLQKRGRLPLTQGESDQQSAIP
SVVSELSLLQKKLHRCLPFELTVDQKRVITEITQDLEREEPMARLIQGDV
GSGKTLVAFFSCLKIIEQGGQVALLAPTELLARQHADTAARLLAPIGIRL
AFLTGNVKSEGRAYLLEALVAGEINLVVGTHALFSKSVRYHDLRLVIIDE
QHRFGVLQRSALIQKGREGNPQGKTPHIIMMSATPIPRTLALSVFGDLDI
SIIKSMPGGRKPVITYIARKTKAEKVYEFVGNEIEKGRQAYFIYPRIHDI
GLTDLKSVQCMYMYLKNYFARYAVAMIHSKMTEEEQQRIMKYFSEGTVHI
LVATSVVEVGVDVPNANCIVIEHAERFGLSALHQLRGRVGRGDVQSYCFL
MHGDEMTECAKRRLKIMGSTADGFVIAEEDLKLRGPGDVGDTKNFEQSGY
SGFRVADPVRDYPILQVAREAAFELLRKEKGSSEAR
>gid:11123  TP0701  DNA-directed RNA polymerase, putative
MIFPMQQLIEFQGNIYEITCAATRRAFQLAAVCDPVLDELGGKVVSAAAQ
QVFSGTVDYRIEPQELG
>gid:11132  TP0709  RNA polymerase sigma-28 factor
MGNTAFEQQSEEELWLEYRRTRSAKIREYFVVQYAPLVKYVASKIAVGKP
GNVEFDDLVSYGIFGLFDAIDKYDPEKNIRFNTYAVTRIRGAIFDELRSI
DWVPRSVRQQTRQIEEAIADLEARLGRXATDTEIACALNIELEEYHQLLL
KVSGTSVISLADSKFGGDERDHVSVGDSIEAPASLNPDVIVEREEIKRII
AEAIRELSQREQQVLILYYYEEMTLKEIGKVLKVTESRISQIHTSANLKL
KAKLTNIKKGIR
>gid:11162  TP0739  conserved hypothetical protein
MKVLDMGRHGLFLLLIFFMLVITVFAVFFGMKRDPLESSLSSDNILKVLF
VIEHENVPISSNVVAYYPATRRAAMFDIPHNMGLILQSLGRTDGIGSLYS
ERGIEEYKREVEKLTGINVPFSVVCSLDNFSKLTDLLSGLSVFIPTPIDV
HTERAGHVLLPSGSVSLDGDKMRDYLLYEDEDEGEGESASRKQKAILALL
RSVNDHSEFFVHSTRAFSLNRLIRSNVRRADLKKLIGELSKLDSERLVPQ
RFSGTKRVVDGKVLLFPSRDGQQIKEIVRQTLAVLASENGTAFERVYALE
ILNGTESHGLARTTANIYQGFGYDVVRVDNALEQSVQKTVLVDRIGNPAV
AKVVAQVIRCQNIETTSASLDEYGVETGIDFTLILGKDFNGYLVKEGT
>gid:11193  TP0770  ATP-dependent RNA helicase
MQGAWLGAHRERAPRALERYGVQRSLCVFVSTRKFHFLLHFPSMDVSFEE
LGLNEQSLAAVRLKGFRCPTPIQAAAIPRLLAGDANIIAKARTGTGKTAA
FGLPLIQELGSPCEHPGALVLVPTRELAAQVASELSSLRIQKIPRIHTVY
GGVSIAEQLRNLEQGGEIIVGTTGRVIDHIERGSLELSYLRYFILDEADE
MLNMGFVEDIESIFSHANKDARVLMFSATMPRQILSIASTFMGSYEVVEE
VTPEEARPLIEQFMWVVRDADKIEALVRLIDVSDNFYGLVFCQTKADADT
VAKSLDERHYHVAALHGDIPQSQREKILERFRTKRARILVATDVAARGID
IEGITHVVNYSIPHDSATYTHRVGRTGRAGSQGIAISFVRPHETRRMEYL
SKHCNGELKASTVPLVEHILTQKEGRIFSSLKTHLCQLLSEGVHGTFTRF
AQRLLQEDLKARVAEALGTSADVPQEPNVSLVAALLQIHYGTALDPRQYR
DIKTITPETARARPHDAEKAYVRIEYGKKSYLTRKRVVQFICALVKIPGH
LVDRVDITERCAFARIPRRAAEEAVRLSKKRKDLPRVSFVGHASRLRNTA
TPAEKSTYPRRLPSGEGLREQISRRTSSSKKASGKPEDSLPPPQEHRLD
>gid:11213  TP0788  T. pallidum predicted coding region TP0788
MRVRTFCFSLVCALGASTYLLWRGWLQLSLPAGSYGVMRSRSGGYHHALI
APGRFLWRWEPLLPSNAELFAFELKKQTVSVTVQDVLPAAKEYAQLLDQH
APFDWTLALSARVALKEAFLLDTVQRERITDQNSLERYVDTTAQAALTQV
SHDFIARCMADPALYERVHTQYGLATRELKRAIEKEIPHCAISEVVLSEV
HIPDMVLYHTAEQAYRAFEAKRSEHLSALAQQAAKRSALENFEMQRLTKW
GEFFQRYPSVIDFLNAIRQDGASTLETLKKGSTASHRAIPHEETTR
>gid:11230  TP0805  exoribonuclease II (rnb)
MMELHVGSPVLYRKRPACVHAIERGKDAKITIETEHGLRRVRVKDVLLLH
PGTVSSLVELLSASHIARISEESVQDAREFFGTEAPSFFELAELLWGASA
AQSWAYWEQSVQSAYFVCNEPAAAVRIRSQQECASCAVQEEKKEARQALK
QAFIQELRRVARSARNMAPTAQEGMHRVHVSQVNEQFTPFLQEIEAFALG
HANRCKILQCALGCEHREQAHEILLHFGFWPVYRNPYPDRLCPLFLSPAH
VSGSDGERAAQQDVHTHRCVTQARTDCTHLAAYAIDGEGTRDPDDAISFD
GTYFWIHVASPAELVLPDSHADACARTRGRSLYLPEGAVRMLSDVVVDTC
ALARDAVSPALSFKILLDEHGDISCVHVLRSMVRVTRLSYAEADSQRDTP
ALQPLFDFARNNIARRKGRGAVDICFPDVHMRVDFPVQETGQAGKEMNAG
DVPDTQGKVPRVHIEAQQSYESMSMVREFMLLAGEAAARFAFLHNLAFPY
VSQERPQLPVQLPAGLAGEYKKRRAMKARRVSTTAAVHAALGLSQYSQVT
SPLRRYVDLLAHQQLLACIDHAYAKAPAVGSAQTNETLALKLAQADEAAR
QATQAERVSRRHWTLVYFLMHPHTRYEAIVLEPLQPRAHVWLPAVALEAD
VALGRQAQFNERVMLRVVRVRLATLEVHFSVCEHCHRGVTQAVEGEAEQP
SXEEYVFGSVLFPCGYFRRCVYXSHLAGSSLQGVPGFCVKVQCFGQIECK
GXQSSLVCG
>gid:11234  TP0809  ribonuclease III (rnc)
MSLCLGHIFSRSRSPLTPERRESLRRLQETLGVKFRDPTALDQALSHRSL
FSSKEDHCGVRHNERMEFLGDAVLGAVAAACLYRALPDSHEGDLAKTKAV
LVSTDTLSDIALSLRIDHYLLLGKGEELSGGRHKKAILADATEAVIGALF
LDSGFKAAERFVLRLLLPRVRPIREKNLHHDYKSTLQVLAHQRYRSKPEY
TVVKRTGPDHSVRFWVDVTVGDARFGPGYGTSKKSAEQCAARLAWEQLSG
TLRE
>gid:11278  TP0854  T. pallidum predicted coding region TP0854
MNARLCFFSRLIFCVLSICALPLVAQEDKLYWEDPWALSTERAAFVKVAY
SHDVVAVVWQEVTPKNATSGEIRLSASFYDGSTWHTVRTFSPPLLYNHRS
PSLASVAVNRKNEIFVAAAFDAHTITVFKTTDFGKSFTHTVLRSQGSDIV
APYVSVASDDSLLLFASHGSEDHFSILLCRSEDGERWTPFQEFLSTEFSR
RLFLPSHVSTQAQEIVVFQAHHQEGERASYQLYSTVSFDQGNTWSAPVPV
TQPDEYHNQRPFLDRLSDDRFAVTWERSERTSTRYEMCYAELDRYGRKIG
TTLRLAEPSDRLITPNFVHIDGTTFCVWAGESAGLNTIFLAQKKEGAWST
TAVRSSEDALLFPHAVRVDNHLEVFWQEGEGARARVMRLRPDQSVQPPTL
IAENFSPNAVRKGTRARVRIVFPRDSSGIAGYNYAWQCGVQPAAPPDYVA
HFPDKPQIELEATQDGTWFLAVTVWDFAGNKSAPAYLSYTRGTTPAARPQ
LQTPLLENTHALKSNTFTLSWNQPSTDAQGNEERDHTSFLWSLQQVAPLS
ALTSLRVDTDVRTFEEFQQRCVRAFPIPVDVHGTRSRQSSVSFTNKENGI
YRFSVYALDRSGNVSEPAVVFFALRHFVPYTAIRYVDVKKDPAGSLQMSI
VGNGFRAQGTVSQVYIDRDRKAPYDLVLHAQEFAVGSDNLISDIHIDNLK
KGSYHVGVWHPARGVHFAESRVTVSEMGTVKFGAYDYEHQVRWSIPHTGG
LRVNFVSLFMLIALFLAGVVFAASLTRIGDIVGEAFVLKKQVEALMIGEL
MPSEKRRKAMALKTHGAGLRVKFILFALTLVISVIFIVSVPLGVRFSKTQ
KDLLAKNLFSRVQVLLESLVAAGKVYLPAKNKLELGFLPNQTTALHEARY
AVITGESEEPHEEGIDFVWATNFSDIETVLNEPEYRQGNSRFVDKRIAQI
LPAMEDLNRQVKKDAEKIAKGIADLTQEAVALALRTDQGSVRRRDDIQSI
TRQMDQRLLEIFSTFSNNAVGSYPEYRVDNLSKRHSSYLFYKPILYRQRG
HADSFVHGVVFVEVSTQELLEHIEGLQRDLIKMVFYVSLIALACGVFGAW
ILASIIIKPIRRLASHVAMIRDTEKKEELEGKLIAIKGQDEIALLGRTIN
DMTEGLIKAALASKDLTVGKEIQKMFIPLDTNTEGRKLTSGYTCDDHVEF
FGYYEGALGVSGDYFDYIKLDDQHYAIIKCDVAGKGVPAALIMVEVATLF
QNFFKDWNIQSHGINLSDIVSRINDLIEARGFKGRFAAFTLCIFNTVSGT
VHFCNAGDNIIHIYDAQQRKMKRITLAQTSAAGVFPSFMIDMKGGFGVET
LTLRTGDVLFLYTDGIEEAKRLFRNKRFELVLCQEQGLAHDAPHETHTVG
QAGEELGAERVSSIIESVFLRKGFSLQKWHNPVEGEKFEFDFSSCEGNLD
EAVLALVAVEQVFRMYKHPRATNLDKIRVDKKVDMFLARYFVQYPEYCAR
KEVNSEYEEYLYYTFIKEDDQYDDLTILGIRKR
>gid:11315  TP0892  N utilization substance protein A (nusA)
MFGVSNDDIRKYAQEKGLDEDFAFKIVEQTLKAAYKTTFKTDENAVVTFG
EERVCIYARKRVVEEVYDRVSEVDLSTALELDPTTSLDSEVLVELESEDF
KRGSVQAAVQRITELSREIQKDALYAEYKSKEGEIIVGYYQRARNEHIYV
DLGKVEGLMPKSHQLPQDDYRQNDRIKSLVREVRKHPKSSVVQLILSRTD
SAFVKELLAVEVPEIYDGIVEVAKIVREPGYRTKIAVTSRRDDVDPVGAC
VGPRGIRIRMVIKELNDEKIDVLEYSPDPVIFIKNALSPAEVLNVVVLDE
EKRSALAIVAESQLSIAIGKQGLNVRLANRLVDWNIDVKTESQFEEMDVY
TDTRRAAENLFDNDYQEESEFSSYVGFTPELIKILQDNGIQDVQTLVDLG
EEGLRALEGMDEAHVQELLAAIEENFEVVEEGEEASVTSSPGTGGDEDQA
LQCPECGVRITTDMSECPHCGIGLSFEFEYEENEE
>gid:11348  TP0924  tex protein (tex)
MTLDQDFVDALSVQEDELAERVARELHIRTAQVTAVRSLLKEGCTVPFIA
RYRKEAHHCLDEVLIRDCERLFHTHLARETRRLEIIRAVFKEGMLTPTLY
EHLRSAPTLAALEDLWAPFKKKKKTRGMQAIEKGLEPLARLIETQCATQA
EIERAAAALVAPAADSDRAVSSAQDAIAGACDILAEETAHCNANRAALKS
FYLSAGVVTATGIGDAHAAHTSVYQMYWDYAEAVRDIKAHRVLAINRGER
EGILDVKITVDLDAAVEQVQEAVHPNNRYHRDAITDGVVRLLSPAVLREI
RADLTASAEQHGINVFSENLTNLLMTQPVKGTRVLGIDPGIRTGTKCAAL
DETGQYLGSFVIYPHNTDHARAALTQALDRYRIQLVAVGNGTGSHAVQEL
IASIISETHSAVAFTVVEEDGASVYSAGDIAREEFPDLDLTIRGAISIGR
RLQDPLAELVKIDPKSIGVGLYQHDVNQKKLSEELHAVVDAVVNSVGVNL
NTASVSLLKHVSGVNSALAKRIVHHRATYGIFTSREQLKTVSGMGQKTFE
QCAGFLKIPESTNPLDNSWVHPENYATGKIIFDILRAGGTVSAAQKAQVQ
SQCAVSDRTVEDIITELQKPNRDPREDYPKPVLRQGLISFADLKVGATVQ
GKVKNVVDFGAFVDIGIKETALLHVSQMSDHFVSNPLKKVKVGDVYTCTI
IGLDEARRRISLSLRQEQRAPADHTATPSRRAPRPRAPEGKTSPERAKTR
GTSPAPGQDFARYQPFAQFFKGKTPHPK
>gid:11440  TP1012  RNA polymerase sigma-43 factor (sigA)
MLSIWYVPFEQKEYSVRQMQFRHDENTLTAYLNDLKRIPLMNEKEEYACA
CAAYAGDAQAKNALVRANVRFVISVARHYRTCGLPLADLISEGNIGLLTA
AERFNPARGCRFISYAACWIRQSILKALNEKARIIRLPVSRIRAAKSTYE
YIPPVTSVNVGISKTQGGNRYGKRRATMCRAVPTVEEVHIWHTPLSLDAP
LGASGSRGESGDVDGLRIGDCVPDDLYAQPEEHMLACALQADIAKILRLL
PARDAQVIRYRFGLGGYERRSLQEIGEIFQITKERVRQIEKKALLRIRSC
ARQHRLDSYIA
>gid:11443  TP1015  N utilization substance protein B (nusB)
MSEVFPKIGRRRARILAFQALFAWDAAGITPETLTQFTWLRRNPPPSTQD
LGFSRLLFLGTLEHLREIDGCVSSRLEHWDFVRLNKVDKAILRLSAYSLL
FQKDIPPVVVIHEAVSIARDFGTDDSFRFVNGVLDNIAKSA
>gid:11457  TP1029  T. pallidum predicted coding region TP1029
MSKISSKISSVDQEKFQAFLQQILRNVKTQEDPRVLDAYRRLFRKSVPFS
MRSYVAAHLAHTHCRAGATAGSTRRTGAREGIRTGSAHAPSCASAPASAA
RARDFERKARDYPALCPGDTTSIFISIGKNRHIYPRDIIALLMQRADVAR
EHIGTIRILDHYSFIQVLSGEAEAVIARLNGLFYRGRTLTVSHSRRADEH
PAPSTEPHAAAVAPEPDFMAEPIPALEE