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# Photobacterium profundum, ss9

>PBPRA0345 putative DNA-directed RNA polymerase, alpha subunit
MQGSVTEFLKPRLVDIEQVSTTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVTEVEIDGVLHEYSTKEGVHEDILEILLNLKGLAIKVEGKDEVIL
TLNKSGAGPVVAGDITHDGDVEIANPEHVICHLTDDHAEISMRIKVERGR
GYVPASARIHTEEDERPIGRLLVDATYSPVDRIAYSVEAARVEQRTDLDK
LVIDMETNGTLDPEEAIRRAATILAEQLDAFVDLRDVRVPEEKEEKPEFD
PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIAED
>PBPRA1405 Hypothetical protein
MKTWMHQPRNIDVSHYVDRYWWLEVGESDSGYEPALLIPNPNANLIFTLP
TQQYSYQQDQQELVGQGSHLLHLCSKAISINDQGSIIRLGIKFKAGALYA
LFGIEGSETQNTVTSDLSLLHPSFTLANIRQLIDTDYASAKEADQIKYSV
DNVIERLDNLFSQVIQLAKEDRHSILVRDALSLLADNSSVGVETKLFCSR
RTLERAFLRVTGVSIKQYEMMIRLDAVLMYIFKNVTDPKNDTRITEPDWA
DIAQHFGFSDQPHLIRQLKQAIGHTPNKYLNTRNLIIDVYGDFE
>PBPRA1671 hypothetical transcriptional regulator
MEESIQTNGNILFKHNDCEFSLRCCALNEEVVLSLFMGRFYAPVQLDTPD
KTEYDTVTVMLNLGSAVYYQIDSLKAPRIFPSNAIALCYSDTRAGLCRYQ
PQSTKLFALQVPRRVLLEYIDVMQIGLLTKRKLEQREPFLIMKSANSQFH
RIAEKLSEPNTNSNASIHRHLSYSFISDAARYLLQEEVTLPRRMDSNKGL
EKAIEILDKEFVLPPTITQLARRIGTNETSLKQWFRKEFNTTIHQYVLQQ
RMSKAVRLLSLGENPISHIALEVGYANHGHFAAAFKKEFGCTPSSYSNKS
NTQRIALSCE
>PBPRA0260 putative met repressor
MAEWNGEYISPYAEHGKKNEQVKKITVSIPLKVLKILTDERTRRQVNNLR
HATNSELLCEAFLHAYTGQPLPTDDDIRKDCPDALPAEAKAIMDEMGITY
EDINE
>PBPRA2284 hypothetical glucose kinase
MKTCLAVDIGGTKIAAALVKDNVIVTRVQISTPTSKEASALTVALTDLLT
PLALEADHVAVASTGIINHGVLTALNPDNLGGLNHFPLHQVISEITQLPV
VVINDAQAAAWFEYKALNQAVSDMAFITVSTGVGAGFVQKEILNTGTRGI
AGHAGHMLADPNGPICGCGRKGCVESIASGTAIGIAGQSFFGTDCDGETV
YQHLLTGDKNAIAIVDRSASTIANLIADLTISLDLDIVVLGGSVGLASGY
LARVRTYLERLPNVYVPDVIAASSGADAGLLGVALWAEQNIK
>PBPRA0409 putative RNA polymerase-associated protein HepA
MPFTLGQRWISDTESDLGLGTVVAEDKRTVSIMFSACEESRLYARSDAPV
TRVMFNVGDVVESHEGWSLEVKIVEENGGIFTYIGTRTDTEEENVKLREI
FLSHQIRFNKPQDKLFAGQIDRMDRFALRYRALTNQYEQHKSPLRGLCGM
RAGLIPHQLFIAHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLAGRA
ERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVESLADATNPFETAQ
YVLCSLDFLRKSRRRFEQAQDADWDLLVVDEAHHLEWSEDKPSRQYQVVE
ALAEATPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYDTFVEEERQYA
PVAEAVTRLLSGEKIDDNARKTLVDLLSEQDIEPKLRLIESSDADDEHAQ
TVRHELIDSLMDRHGTGRVLFRNTRAAIKGFPERHLNMYPLELPSQYKTA
MRVSSMMSGSISAEQKAIKLLYPEDIYQEFEGESATWWNFDPRVNWLLEM
LKANRNEKVLVICSRAQTALTLEQALREREGIRATVFHEGMSIIDRDKAA
AYFAQEDDGAQVLLCSEIGSEGRNFQFSNQLVMFDLPNNPDLLEQRIGRL
DRIGQQRDIEIHVPHLEGTSQALLAHWYNEGLNSFEETCPTGRAVYEAVS
DDLIALLACEKHEPEALENLIEKSAAMHHELKAKLDQGRDRLLEIHSNGG
NAANDLVTQISSKDGDTNLIAFSLGLFDTIGLNQDDKGENAIVVTPSEHM
MVASYPGLPYDGCTITFDRETALSREDLHFISWEHPMIQGGIDLLLSEGV
GATAVSLLKNKALPAGTLLLEMVYVVDAQAPKSSGIGRFLPKTPIRILLD
AKGNNLSNKVAFEGFNRQLSPVNRHLASKLVNSVQKEIHVLIAQAEQEVA
KELVTVRESAQTEMENSLQAELTRLQALKAVNPNIRDDELELIESQIQDL
TGYIGKAQIQLDSLRLIVVSHN
>PBPRA2215 hypothetical protein
MPSLSLLDLSFIIFESDKTPMHVTGLVILEPPKEHAATYAQDLYGEFLQQ
TDVTAPFNWKLQWSFTGKPSWQTLPKVNLEDHLRITMLPSPGNDQQLQQV
VGRLHGQVLDRSRPMWEVWVIGGLENNRVAIIFKVHHSMADGVRASSLFT
RSCATNPEDSFSQPIWQCDLRKTASERRAETRLTNMVIKTATQASKQISL
IPSMFRLGSKLALKAVKLADCDLKVPFTAPKTPFNLSPKRSRAVSLGQFS
MGRLNQLSRITGSSMNDVLFTVSDIALNRYLNDRSLPLRKPLVAMMPMSL
RNKGELESKGNKMSVGHVELGRSHLTSLERLEAIQQATVDLKNEALNISP
DAYINYSLLVNGASLISGKFGLNGFIPPVSNLLISNIPGVKDTLYFMGAK
VKEQYPVSLLMPGQTLNITFFSNAGQMYYSLVACSQSLPGFEVIAGYMEE
ALNELEQDIMDTAVSAVSEQMESHDSETVAVEMAVLAAREALTPDDAEFE
RLYIEKQQRVDHLEKQLSQLTAMLSKTIEIDPAVKPINEELMNQPVVLDI
IPKTGSSAS
>PBPRA2822 hypothetical protein
MIIYKHGNDIFEPQKSAFRTTESTTKLSASETKVLQYLIENNGEIITREK
LLEIGWPNKVVVPNSLNVAIANLRKAFKTKIEIIITIKGAGFTIAKNTFI
QHTIQPEPISLVNEEMDAEKSDKKNISIHNDGHSISKSKRQLFQTVSFSI
SFVVVFTWVTLWVSSWQSPPCISFNEQEICGNIELLNLEDLPKTASRSLY
IDFKGNIYEAQ
>PBPRA0028 Hypothetical flagellar protein
MNPMIGKISHSQPMALPPEVTNKTAKPSTSNVAQVELSSELKSLQSAKES
MDKTSDVDMNKVAEMKAMLNAGKVSINLDDLAGSMLDFYQDNK
>PBPRA2667 hypothetical protein
MTASFSRLTPKQCDILLTLAFSIDQNTHSSLLAEHENSGSKSMKAVDLTS
RLAGLMRVGLIEQDDSQSYELTISGLAHLIGYQVDEEFDIGRAIMALNFE
TSPWVEVLLVCLDFRWLLHNGMSEEASEIMRQLMINPLVWPMIDRLSTSV
AESLLPETWFGHILNSPYPKWIMPAIDQLDLWEDDLIALDWRADLHWLEE
GDASHSGAYNDVYNSKGVLADTLTLDVVSQFPWVKNAVGLSASKSVVATK
YGVGSLIEVAAVALFDLPLAKARTEQLYTGLMNNTEAEFAPSWCEYLTLL
TSDVAELEAYFSDLTYWSNTLVNDDIAWGRIYLDVLMACRLIDSDPEVQD
RFITALTNDAVISRILTAKMPHLLAQRAVAGLKHILLLPEVSSFRQAMPV
WEQWLNGLTQLAELPQSNQQGSQRLVWQLTPRYTHISAKIQKLGKKGWSK
GRQVQLDDLHYKYPELMTNEDHELVAVINGQLNRSWGSWRAEVELNVSLL
KVLVKSDNIIDEAGNSLTLYAEKPLVVLSAAEDRLALSSFPSQTSTLLYP
KAGDALAFLDLSDQVSTFLAAVKNYPASLPLTACEQVESTLAQFSQLDWY
SDINQQGTVTLGEWNTQPQVWLDWHDGVLGVSIEHQPLDSEQSGVALSYP
SGQGAQWVPQGVTSPIWYRRNLKQEQSASLTLLKAIGLKANVKRQWRLLG
DHALNMIQMLPNIKDVPIHWRAKSQQLSVVGTQDFRLEVEQQQDWFALEG
KVEVDKDLELNLRTLLSHNRAGFIRLENEGITVMLSKTLQQQLRVLESLL
NDDHQVDQRMAYPLQQLIATFSHQGDDGWKALVEQWREKPVLAAEILAPL
RDYQKESVNWAAHLAHHGFGACLADDMGLGKTLQALTLIRHFGAQGASLV
VAPKSVLLNWQQEALRFAPELTIIDVESASDRTAAIEQADANSIVLLSYG
LLSRLETTLHEKQWQCAILDEAQQIKNPNAKRSKIAFGLQAKCRFTLSGT
PIENHLLELWSLFSFLNPGLLGSRQQFKKKYGNAANSEEDMLRLRTLVSP
FIMRRLKQKVLTELPSKTEITHTIELSKTERTAYEAIRKESVAVAKSGKG
MVEVLACLTRLRQVCCDSRLVFSEMDQPSSKLNEALQLVKEAREGQHRIL
VFSQFVTLLKMFADQLEGDGINYSYLDGKSSSRQRKQAIDAFTSGKKEVF
LISLKAGGTGLNLTEADTVIHLDPWWNPAVEDQASDRAYRMGQTKPVTVY
RLVATNTIEEKIVLLHQSKRDLADKVLSGQDGNQSLSPELLLTLMDEE
>PBPRA0644 hypothetical transcriptional regulator
MTFKNALCIRITVAGSFIMGYLERIKQLAKIQGISQKQLGESLGLQQGTM
SRKLSGKYGIEVRELERIAVTLNTSIGYLLTGQIDTSTQATTAITHESSQ
GSTCTYIPIIHRKDFGSFIDGESVNVVSKRVIPQHLERDDCLGLFVDNEN
ISQCAPIGSYALATKQAAYRPKQPVFASVRNSEPDFYHMTQLADGVIFST
SQPDFPNLFVNNDEFKVHGYIIQSDWAYDR
>PBPRA1983 hypothetical transcriptional regulator
MKCSTIESAHKALLNSKDNITGIFLDLNIEKRLDGLELLAFIRNNYPTIP
ISIITSESDTEIVKRTLLCKPQDYLIKPLSVAKVKRSILKFEENKKHKLN
MTS
>PBPRA1593 hypothetical protein
MKYQIVGGAGLHRSETKTVDMMVKQLPDSWFGYAGLVVTDSQGSMEIDTL
IITADRLLLVELKEWNGSITYEGGKWLQNGKPRGKSPYQIKRDHALRLKK
LLQEELSRKLGYFLHVEAHVVLCGSAGPENLPLSERRYVHTRDEFLAIGK
PKHYDKLVQATNFGHLFEGDNPRPNSTKVLPVIQSFFEGPKVKALPLKES
GYIANDKPFFSHPHKIYNEFRAAHKDNSLHRGLLRQWDFDALGVANAEQS
LWAEVALRETRVGRQVRNGSATMRDYMLRAVSELSEEEITDDARELYELR
RSFKRLDEVLDSEAEGWSKPQRIDRVRALLAPFSELHSLGVAHRDIDPHN
LWYAEDQRSIVVTGFGAASLDGRDKLEALRPTLQSAPYMIPEDAFEEAAE
PYRQDVFMLAVVVYRICFAGESLLAGEQVPEWRTPQEDPFGGALNCWFEQ
ALNLEPSKRFPRADIMLNEFNSATKEQIQGHDEANQIHQELQQSEFFRDG
MNSVGVLMEFQPLPELLAEVYPALAAIASTGSISYRSCQGEQSLQVKLWD
GVTLNPQQPGVNRRIHAFKQRIDKLKQLTLPTPAVHASGLLGQGGLYVVS
EHLDGHPWPQFIAETELDQPQRLAIAEQLINTVQRFHEKQLPHGDLCPNK
LLVQASEQPTLTLTGLLEYSDELTANECYQPENPDATDAFGRDCYAIYRM
VEELFAEDMPVLLQAELERAKQSVDGVPIALDPLLQSLKTPLIPEVNKVI
EPKQKLAQAIPICWGSDTWPQDLKLLEQNDGSYHFNCNWSTNPRFSHELR
CYITGLGEQLLIELDPENRIITRINYHTDLSIEQTIKAGKHSQTKIDTPL
SVQRGSLTERNDLIELLMGLEPVIDAIIERTNPNQEMDEDDFDSSESSPV
ELWQALADTEGELRDQVNIDSADYQESPSGCLLYPYTTESGADLNFELDD
KIIVYLKEKRESTQLGELRLSETTPNLLAIRFDFDAARKRISNGSQLQLE
SIRNKSSRELRLRALQRVIDHKAEIPQLPQYFDYHQKPSMQQMQPQPTAE
TLRELYDQPGQGFNEQQLMAFQQLVVQGPVGVLQGPPGTGKTTFVSKFIH
YLYQHCGVNNVLLVGQSHAAVDNVAIKARELSHQQGMELDTVRIGHEQMI
DDGMLCVETKALQRQIQHKFHREYDLRVGTLGKRLGMAPSLVEQLCQLHR
TLNPLMVSFAQCQRELVKLEKTKGSGVYYQDVMAQLSKQLDQIKQRTQTV
IHSMFANELSESLVYDQTLMTQLADLIAVQRCYNNPENLERFLQLLEMSQ
EWMDVLQGGEAGFDRFMLKSKQLVCGTLVGVGRRRLELTESSFDWVIVDE
AGRAQAAELMVALQSGKRVLLVGDHKQLPPFYHQQHLKLAAKKLELGRGI
FYESDFERAFKATTGVTLDTQYRMVEPIGDLVSECFYAKDIGKLHTGRGH
SPNWYAQLPSPWNKAVSWIDSSSPNPEGGEDVRGDGRYYNPREVRLLLDA
LQTLASDDNIAQLEQTITAEQPYPIGIITMYRQQKEEIENAISRAEWAGA
LRSLIKIDTVDSYQGQENKIIILSLVRDNSDKLQGFLRDAPRINVAISRA
QERLLVLGAGRMWSKDNNDSALGSVHEFISKQVTAAEPNYQMLCGQSLLG
DND
>PBPRA3542 putative ATP-dependent RNA helicase, DEAD boxfamily
MKTTHITEQKFADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIA
GQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQI
YNDAAPLLASTGLKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYK
QRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKARLNMLFSAT
LSYRVKELAFEHMNSPESVVVEPNQKTGHLIQEELFYPSNQEKMRLLQTL
IEEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILE
QFTQGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRA
GESGSSISFACEEYAINLPAIETYIEHPIPLSKYNSEALLDELPAPLRLQ
RTPRQGGNRRPNGNRQGQGQSRPRNNNRRHPQSQKQQ
>PBPRA0992 hypothetical transcriptional regulator
MCQRVIANTPKFQMFDLQKIEETEHMIFGADYILIRPKTAGCTLHLANTH
YQLRVGQLILLAPFNPFRLSLDQHQKAPTDCDTLHFRLNALGQTFVDSVQ
FYTIKTMLEQSRSGTLFEGQGISEIHHFLDKMENTFEFSQVLNLLGLLEK
LSAMIPARYLANNRFEVNNIKRTESRVHIVQEYIANNLAEQLSVALVAEQ
LHMAESTFSRFFHANLGVTFRQYVIEQRVRQAARYLVMTDWTIAHIGSEV
GFSSLSNFNSKFKSLLRVTPREYRASHIDMRKDIESSRAVEGQIQKQLSD
TML
>PBPRA0192 hypothetical protein
MRFSLLDDTDVSQAFATHLRGLRKEAKLSREALAKRSCVPASTIKKFELT
GQISFRQLLLLWQSLDSLDRLYQLTQASSARSALPTSIEEVLKDEF
>PBPRA0051 Hypothetical protein
MSSRPLKRVNYSIYLDPVNSNADRYAVGVMQGWAKDRKEMMSDPSAGVAL
HYSLHMHKNIYLAGMFLYLLSPALSNALAGSLTEERIKIDTLEQQLENCG
LALPSTKPSLPALDTHALIDELKAAVNMKSLMDEIQQIKAGLVESNTVTA
AVQNGLSESDIAALQQNLAAEIKAHSQHREIAELKALLKTQNQLIKSLSN
GQPLPEVEKSEPELDLSQQIANIQKVKKKGIF
>PBPRA2493 conserved hypothetical protein
MKIQLENINSFITAAEQGSFSAAGRELKKTQAAVSLAIQNLEIDLGFQLF
DRTNQYPRLTQKGEQLLRNAKLMMSHYNSFIESSKTIYTMNDVKIQIGVD
PLVCGPDVIQIIRDFSEAFPNVELFLMQQSSALLAKEVHAKHLDLALGIF
PFENKLNFEFTTAFHMNSSWVASPTYLNTKSDVISYHDFCQLRLLVPGNI
DDLGLSEIKSASQLWHVEDIHTILSLCRTGMGISCLPDFVLKQDLELQRL
RKISFSFNKLKNNYWKASLIWPKSTLLTPALMWLQKRLTDIDIL
>PBPRA1672 hypothetical transcriptional regulator, AraC family
MKHCSNSIPITNINSTHDQLISSFDKAPLGSSVGDCLGCQIHTLSGYGGC
TSHQEGQNKKTTFLRLLTVVKGDNIRWHNGKDEPKQLQKGKSVLIFSENT
FNDVFISEKESYIEIADIRFDCNYLSPIYQQMSEKFQESGINPQTDNIPL
VFNTIIEIQQFINQLQTELTDKESGVTDNLLAVLQAYHCLSKILDQLEMI
KSNKTDHECSCLSSRTLNKVRKAHTLITSKPGENWSIKEICKEVGTNETS
FKRGFKLLFDNTFSKVLQQARMEVAAKELLYTDKPIIDIVYNIGYSSPSY
FSKLFKQYSGEKPLQYRRQRQ
>PBPRA1307 hypothetical protein
MKSIYDYRCENLQSVRLKFKTISEMAEFIGTSKQSMGQLLNGNRKLGANL
ARKIEELLDLPINQLDQSDASTPEEVDELSKEIAKRIIKSNIPPRKILAM
IDALLVEDE
>PBPRA3431 putative RNA polymerase, beta prime subunit
MLLRYEYEGASRLAPLWVNSSQEPNVKDLLKFLKAQHKTEEFDAIKIGLA
SPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKY
KRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPSRIG
LLMDMPLRDIERVLYFESYVVIEPGMTNLERSQLLSEEQYLDALEEWGDE
FDAKMGAEAVKALLGNMDLNAEIDLMREELEETNSETKRKKLTKRLKLVE
AFLLSGNNPEWMILSVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINR
NNRLKRLLDLAAPDIIVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLK
SLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE
LFKPFIYGKLEARGLATTIKAAKKMVEREEAVVWDILDEVIREHPVMLNR
APTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGM
YLAGPAEAEKAYLTKNAVLHARVKVRITQYAYDEQGNLSSETGLIDTTVG
RAILWQIVPKGLPYSLVNTEALGKKQISTLLNTCYRKLGMKETVVFADQI
MYTGFAYAALSGVSVGIDDMLIPKEKYTKIAEAEAEVAEIQEQFQSGLVT
AGERYNKVIDIWATANEQVAKAMMDNLSVETVINRDGEEEQQKSFNSVYM
MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFI
STHGARKGLADTALKTANSGYLTRRLVDVAQDVVITADDCGTHAGITMTP
LIEGGDVKEQLGDRVLGRVVADDVLKPGTDEVLAPRNTLLDEKWCDLLED
NSVDQVKVRSVVTCENDFGCCKFCYGRDLARGHLINTGEAVGVVAAQSIG
EPGTQLTMRTFHIGGAASRAAAENNIQVKSTGSMRLHNAKFVTNSESKLV
ITSRASVMTVIDEFGRTKESYKLPYGSILSKGDGDSVVQGDTVANWDPHT
MPIITEVAGRVQFVDFIDGVTVSRQTDELTGLSSIVILDAAERTSAGKDM
RPTVKLVDDKGNDVMIPGTDMPAQYFLPGKAIVQLEDSALVGIGDILSRI
PQESGGTRDITGGLPRVADLFEARKPKEPAILAEITGAVSFGKETKGKRR
LIITPSEGQPYEEMIHKWRQLNVFEGEKVECGDVIADGPEAPHDILRLRG
VHAVAEYIVNEVQEVYRLQGVKINDKHIETIIRQMLRKVTIVKAGDSEFL
PGEQVEFSRVNIANRKLEADGKDIVTFSRDLLGITKASLATESFISAASF
QETTRVLTEAAVSGKRDPLRGLKENVIVGRLIPAGTGFSYHQRRQNQRNA
ELEPVAPQVDAEQASQDLAALLNAGLSDD
>PBPRA0190 putative DNA-directed RNA polymerase, omega subunit
MARVTVQDAVDKIGNRFDLIQIASRRARQLQTGGKDPLVPEENDKYTVIA
LREIEEGLITKDILDARERQELQEQEAAELAAVSAIAGDHHHHR
>PBPRA0460 conserved hypothetical protein
MLDSMIYFDRQVLKGIKAKLDEANVNVSLHLESGTLLEELTREHWDYVIA
DYDKPHFQQIVQTCGAKSVVYSNHQRDDFSEKMSSVVMDNTCLASAALRR
FLDAKYTHVGFYTNEQDALQPWGQEREEAFQLLTMQAGIHFVHDVHQAMA
ARQFPFGVYCSSDRSARKLAQYCQCNAIAVPKDVAIIGTDSDDTERMLSP
LPLSSLDVNPYELGRFCVETLIKTIRFKRTLRLRYAPETLYEAATTTHCN
HVDDIVSRATLFIRNNFHLNINIKQVTDYCRTSRKTLDTRFLAAQGITAH
QYLTEVRVARAKYLLAHSQNKLDSIALQCGYPNQSYLTQVFGKQLGVSPS
QYRQASIMHFLSKMDKQ
>PBPRA3432 putative DNA-directed RNA polymerase, beta subunit
MVYSYTEKKRIRKDFGKRPRVLDAPYLLSIQLDSFKKFIEQDPEGHYGLE
AAFRSVFPIQSYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKL
RLVMYDKDAPAGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNVFVRIDR
RRKLAASVILRALDYTTEQILDMFFDKVSFEVQGKSLVMELVPERLRGET
ASFDIEANGKVYVEQGRRITARHIRQLGKDGVDQIEVPVEYIVGKISSRD
YVNEETGELIAAANQELNLEILALLSQAGHKSIEVLFTNDLDYGPYMSET
LRVDSTTDRLSALVEIYRMMRPGEPPTREAAEQLFNSLFFSEDRYDLSAV
GRMKFNSSLLREETTGSGILDHSDIIEVMKKLIEIRNGRGEVDDIDHLGN
RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDAIMPQDLINAKPISA
AVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDV
HATHYGRLCPIETPEGPNIGLINSLSVYARCNSYGFLETPYRKVVDSKVT
DQIDYLSAIEEGQYVIAQANAALETDGSFSDELITARQKGDSGLHPRDHV
QYMDVATNQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLV
GTGIERSVAVDSGVTAVAKRGGQVQSVDASRIVVKVNEDELVPGEAGIDI
YNLTKYTRSNQNTCINQRPTVMPGEPVARGDVLADGPSTDLGELALGQNI
RIAFMPWNGYNFEDSILVSERVVQQDRLTTIHIQELSCVARDTKLGSEEI
TADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEE
MQLKEAKKDITEEFQILEGGLLARVRTLLLSIGYSEEKIASMDRERLFAL
TLDDESLQNQLEQLAEQYDELKAEFDKKFETKRRKITQGDDLAPGVLKIV
KVYLAVKRRIQPGDKMAGRHGNKGVISKICPVEDMPYDEKGQTVEIVLNP
LGVPSRMNIGQILETHMGLAAKGIGDKLNEMLKQQQELHKFRNFLQKVYD
LGDTRQDVDIAALSDDQVHTLVQNLRDGLPIATPVFDGAPESSIKELLKL
GDLPESGQLKMFDGRTGDMFERPVTVGYMYMLKLNHLVDDKMHARSTGSY
SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAFTLQEMLTVKSDDVNGR
TKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELEDK
>PBPRA1692 hypothetical protein
MTTKALTRCYRFHDVDFEPDLNLLVWHDETETRLTLHESRLLEVLCYFSG
EVITSQTLFDKTFVQLGPDTENTHDQFDLNSLFISLNKKLTHNNAMAIPI
QVVPKYGFRVPLPEKTCRLFHTFKEPKQDVAPTSHTEETPISTTEDIVKN
SIFHKVSVLMIAIASIVLYFAYKL
>PBPRA1781 conserved hypothetical protein
MASHSTIGNYYIDTLTQTVTRTTDQQLIKLSKSEVLIVALLASNHGVTIC
REHLLKCCWPGKVVTHSSLTVAIKNIRNAFAIIGDDNIIVTEPKKGYSIR
LQENDVPLHAPKFHLKGIDPLPETVLPLNIEQTAHFTEHEKINVKSTTLL
FVKNHFVSVVFFLLTLVVFSKYFLFVEHTSVNGISTLYDGVDIPERISLS
VNSIPSDMSELIVYPLGGLCSSFQIIGFNDMSIVDFTAKIDQGDCNNE
>PBPRA0165 putative LexA repressor
MIKAKIEDSGMPPTRAEIARELGFRSANAAEEHLKALARKEVIEIVPGAS
RGIRVLRHDEVEAKGLPLIGRVAAGEPILAQEHVETHYEVDPALFKPRAD
FLLRVNGMSMKDIGIMDGDLLAVHKTQDVHNGQVVVARVDDDVTVKRLDK
QGSQVLLHAENEDFAPIVVDLTHQQLTIEGIAVGVIRTADWM
>PBPRA2268 AGR_C_43, hypothetical transcriptional regulator
MSKIREKNQDLIIEVACRLFALQGYAATKMADIAKEANIPKPNVYYYFST
KDNLYRAVLESVIQPLLDASKPIEQLDDPAEALTEYIKTKLRISRDHPYA
SKVFANEVMSGAKYLPQDIADGLLQQSKMIVEKFELWIEQGRMVKVSPQH
LMFTIWASTQTYADFSWQICNVLNKPALDNNDYAEAAEFLTQFVINGCQL
NK
>PBPRA1543 ALL7170, hypothetical protein
MNISLVAPSSSSVDVLMKLIEELFAYEALPKKIEQTNHAVNQLLSNPELG
QAWLIEVEHEGEKIIAGHIIVSYSFSLEHGGRVGLIDQFYLKPDWRQQGI
GTELIPQIEHQIAQSGIHALSLEVNIGNAGARSFYERHDFVPRRQFCMMT
KVIIPSEVPLNIAS
>PBPRA0471 ARGR, hypothetical arginine repressor
MNGYDIHGAIDLTAADESITSACKRLLQQQSFTTQDDIRHQLIKLGYNDV
SQSTVSRLLSRLSVAKVPNAYGKKVYCLTLENEPVQVGSSISSQIEFITH
NQLVVVVKTHPGGAQLVARLIDIQPHAEILGTVGGNDTVMVAPRDIMRIE
ECEKVVKIRLGIPA
>PBPRA2744 ARSR, hypothetical transcriptional regulator, ArsR family
MELEFVAKALKELGHPTRLFIFKHLVKSGHDGLPVGRLQEELSIPGSTLS
HHISSLMSAGLVKQHRDGRTLYCLPQYDVLEGVIGFLQDECCSTTTE
>PBPRA0586 ATU2278, putative Transcription activator HlyU
MDLQQMEQNAPKAVVLLKAMANERRLFILCYLLEEEMSVGMMSEKLGLSQ
SALSQHLAWLRRDGLVDTRKEAQTVYYRLKSDEVRAMIKLLHGMYCG
>PBPRA1412 BB3971, Putative transcriptional regulator, LysR family
MAKTDDLILFAQVVEQGSFSKVAELNSLTNSVVSKRIARLEADLGVQLLY
RTTRKLTVSEAGKVLYQGAKNVKQAAVEAIDAVYGYGESVTGHVKMSVPT
ISGDLLLADAVAEFCSMHPGLTVDMSLENLFVDLVEDGYDLVIRTGYLED
SSLIARHILDSQWVICAAPAYIASVGKPMTPEDLVTHNCLQYAYQTTGAS
EWEFKGDSGNYIVKVAGNFSTDNAAALRKAALGGYGLAYVPRCLVYQDFL
KGDLIDVFPKRVGKKLGIYAVYPFTRQPPRKIRLLIEHIRERYLAMRECF
>PBPRA2761 BB3971, hypothetical transcriptional regulator
MDVSFEQLKSMVVFAKIVEQGSFSAAARQLGLSRGVVSYHLKKLEDHIGM
PLLNRTTRSISLTDAGQRYFQRCKRISEEAAAANLQIENLREEPEGKLTI
SAPVNISMHTIVPALNTFKTLYPKIEIDLNLTDDIVNIIQEGVDLAIRGA
PLADSGLYAKKLMTMKNILCGSPSYFNQHGIPRTPAELANHEWVVYKKTS
KIQTLTKGTRSYNVKMQGSITTNSASARTAFVVGGHGVGRLPIYDALPLI
KAGQLTPILEDYALSDITIYGVYPPRAADSKKMRLLLDYLQEHFTQYVM
>PBPRA2762 BC0561, hypothetical Response regulator ofcitrate/malate metabolism
MSLISVVIVEDNAGIAELHRRCLSQIAGIEIQAMAHSYQEAITLFDVLSP
DLVLLDVQLPDGSGLDLLRLLRAEKQETDVLLITAARDVDTLQEAMRGGV
VDYILKPVVFSRLEESITKYLDSRVTMAGLGAIEQSDVDAMLMRPKEHKS
TAQLPKGIDNVTLDKVRELFKSNAQLTAEQSGQLIGASRTTARRYLEYLI
SSGELEADLSYGTVGRPERAYVKRT
>PBPRA2520 BLL2800, hypothetical protein
MGAYMTQTSSNTYSAKECVSSSDLNKIEVALNTPSKQQKSSLFSSNKKVE
NRLHVAMGGYSIAGVRPVNQDAFSVKLPSNNNVVKYKGIVACIADGVSCS
ENAQQASQTSVTQFIDEYYSTPDSWNVKKSASTVLTSLNQWLYQHGQYSD
LRHNGLVTTFSGVVLKSNTAHLIHVGDSRIYRYRQGKLILLTRDHCRKQK
GRNSFLTRALGMDSHLEVDYQQKSIEKGDIFFLSTDGVHEWLSNNEITAL
IYEGKKENRDREQQAKAIIAQAQANGSDDNLSCLLLEVLDVPSLNIEEAY
NQLTEKVIPPILKVGNTIDNLKVVDVIHSGTRSHVYLVKKIEDNAEAAHY
ILKAPSPNFAEDLLYLEGFTREHWVGCQLNNASIMKIYDHNTSSPFLYHL
CEYVEGQSLRQWMYDNPKPSFESVRIIAKGMIKAIRVFQRMEMVHRDLKP
ENIMLAKDGRIVIIDFGTVQVDGLDEIASPVSEDVPMGSVDYIAPEYLAG
ERAQHQSDIFSIGVILFEMLTGKLPYVTRPSRVVQSIPHQDWHYISACQY
REDIPFWLDITLKKACQPSPKLRYQAMSELQQDFTSPNPQIVAEYDKSPL
IKRYPISFWKVVSLVLLVIVLAEGYFLMTIS
>PBPRA0141 BLL3077, putative transcriptional regulator, LysR family
MDLRLLRFFVVVYEEKNITFAAERCFVSQPSISNAIKQLEEELSTPLFIR
HKKGVNLTDEAHYLYPLAIRLLNDINRLPQLFQQRTECLPLTLGNFPDLS
QSQLARFLALLTQQVPNVLLELVDHSAESDARITLDMFKADGEIFLPLWD
EDYVLCMLPNHPLAALNKVTPQQLHQHDFIECPPCEAHQQTIGLLACDGL
AVNLVAKAEHKTQVMHLVQAGLGISFLPTGVLETAKELVTVPLDGPRMFR
RLGLCYPANKTLNPTLSAAVKVLSQYAHSDKVGTVLTEQNTES
>PBPRA2352 BP2216, putative transcription regulator, MarR family
MDKHEEVLIALRQIIRAIDLHSRKLNKDAGLTGPQLVLMRAIRDSGEKVT
IRQLSNNTNMSQATATTILDRLEKRELVVRERSKLDKRKVHAHLTEKGIE
VIAKAPLPLQDSFVSQYQDLDDWEQSLLLSSVQRISSMMKAEHLNVAPLL
EVGSITQQETTTEQ
>PBPRA2078 C3434, putative transcriptional regulator, LacI family
MATIKDVAKEAGVSVATVSRVINKSPKASKSAIDAVSTAMRKLGYRPNAN
ARALVSRSTNTLGVLVGDVSDPFFGSMVKSIDGVARNNGKHILIGNGYHD
ADTERDAIELLINSRCESLVIHSKGLSNEELIAYAKEVPGLVLINRYIPE
IAEKCIALDNHKGSYLATEYLIRHGHQHIGYVCSNHQIEDAEQRKAGYQE
ALKAHGLHQPESYIEYGSPDEQGGEQAMTNLLAKNLPITAIAAYNDYMAA
GSLSILEENGIQAPENMSLIGFDDGLIAKYLHPKLTTIRYPIQMMAEHAA
QLSLKLANKNQPIEPEKTDTDTHMFIPTLVRRLSVDKVKS
>PBPRA2775 C4153, hypothetical protein yhfZ
MPTKYIKKEGAAVINIARYLMSQKEGARLRTIDSLAEEFELSVGLVQKAL
KKIEADGVIALSRQGRNGTYISRLDSEEIVRLAGLGHVVCAMPLPYTKHY
EGLASGLKAQMSSLPLYFAHMRGASVRAKLLSSGVHDIAIMSKLAAQSYS
DGLTVAVNLGKNSYSNDHRVIYRKGEYSAIRRVGVDSDSPDQQILTKQAF
PDQDIDIVEINYDDSLVHLASRNIDAVIWLTEAIDMGNVGLAEKSLNHIP
QCEMASEAVLLVRNEAPHIKVLLRNLINKDALISHQKKVVTGEITPSY
>PBPRA2788 C4153, hypothetical protein yhfZ
MSKQYIKKEGAAVINIARYLMSQKEGARLRTIDSLAEEFELSVGLVQKAL
KKIEADGVIALSRQGRNGTYISRLDSEKIVRLAGLGHVVCAMPLPYIKHS
EGLASGLKAQMSSLPLYFAHMRGAGVRAKLLSSGVHDIAIMSKLAAQSYS
DGLTVAVNLGKNSYSHDHRVIYRKGEYGGIRRVGVDSDSPDQQILTKQAF
PDQDIDIVEINYGDSLIHLASRNIDAVIWLTEAIDMDNVGLAEKSLNHIP
QCEMASEAVLLVRNEAPHIKALLRNLINKDALNSHQKKVVTGEITPSY
>PBPRA0189 C4475, putative guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase
MYLFDSLKEVAIEYLPESQIEALRQAYLVARDAHEGQTRSSGEPYIIHPI
AVARILAEMRLDQETLMSALLHDVIEDTEVTKEDLASRFGDTVAELVDGV
SKLDKLKFRDRKEAQAENFRKMIMAMAHDIRVILIKLADRTHNMRTLGAL
RPDKRRRIARETLEIFSPLAHRLGIHNIKTELEELGFEALYPNRYRVLKG
VVAAARGNRKEMINKIHAEIEGRIDDAGIEGKVLGREKNLYSIYNKMKNK
EQRFHSIMDIYAFRVLVKDLDTCYRVLGQVHNLYKPRPSRMKDYIAIPKG
NGYQSLHTSLVGPHGVPVEVQIRTDDMDQMADKGVAAHWSYKKNGESSGT
TAQIKAQRWMQSLLELQQSAGSSFEFIENVKSDLFPDEIYVFTPKGRIVE
LPVGATAVDFAYAVHTDVGNACVGSRVNRQPYPLSKPLKNGQTVDIISAP
GARPNAAWLNYVVTARARTKIRQVLKTMRREESITLGKRLINHALGELNI
DQVDPTRLQQLLTNQRLETSDDLLVEIGLGELMSIVVARRLLGNTEDDHS
TDANTGRRMPIRGADGILMTFANCCHPLPGDAIMAHVSPGKGLVIHREEC
SNIRGYQREPDKYMPVEWSEDFEHEFVTTLKVDMQNHQGALADLTNTIAA
TGSNIQGLATEEKDGRLYTITVRLTTKSRIHLAKIMRHIRVMPNVVRVAR
QKN
>PBPRA1378 C4750, putative transcriptional activator
MIEIKHLRTLSVLRDTGSLTATANTLCLTQSALSHQLKDLEQRIGGQLFL
RKTRPVKFTSEGEILLRLANDILPRLAKAEHELASLKEDINGRLHMAIEC
HSCFQWLMPALKEYQVHWPSVTLDFSSGFGFEPIPALAAGELDLVITSDI
QQRNEIHYEPLFDFEMRLVVSPQSPLADKAVIEPEDLLEHTMLSYPVQKN
RLDVVKHFLQPAGIEPKAWKQADNTLMLVQMVSAGLGVAALPNWAIHDFA
RQGLIVSKPLGKGLWRRLFAAVRASEHDRHYLKAFFATARQQCQTHLDGI
KTA
>PBPRA0572 CPSR, putative sigma-54 dependent transcriptional regulator
MAYIINRYNCMLLSLVLTILAVISHGYCLLSKGLMMKRGVNMGVMPGALV
VFGGNSQSWLPSLEQAGWVCHRCYDLRAAESLLLDIGPCIGVVDLSKDDF
SINGIATLVNRNKQVRWLAVVREEQLTSDAICQFIASFCIDYFTSPTPAA
QLQETIGHQLGMLQLERKVWPDLGRFGQQGLQGTTEVMKRLRHQVQRIAA
NDVSVFIEGEMGTGKELVARAVHQASTRANNAFVRVSCETVTADWFSDSN
DEQHCDMNFSPCCFALADKGILYLDEISALSDQRQQELLQFIQDDTFTTA
AGEKVTSDIRVIVSTSYPVEQLVAEGKLRQDLLYRLNVVTLVVPALRERG
CDISLLAEFLLLKFARQYNSVAKHFSDEAQKMLITYPWPGNVRELISQVK
RAVLLAEDKSIEADHLDIPRLNDDKQSLKTIREESERGALLTVLENNKGQ
ISAAARELGVSRATMYRLLNKHDLVPAPRNFRDNP
>PBPRA2646 CV0581, putative transcriptional regulator
MKLDDLNLFRMVVENGSYTGASRKTQVPVATLTRRIQALEECLNLRLLNR
HARKLSLTEAGQKFYDDCAPLLQQLVDTTEHISEECKGAAGKLKIAAPSN
LTKVLLQPMLNAFMLKHPAISIELHMSSEPEQLDPTDWDIMFRVGPQRDS
TLIARRISAVKDILVASPIYLKNNPEPKHAQDLHDHTLLKGNPLLRWRIS
DHNGDTVAINERGLFEANQLDVVRKACCAGLGITLMPNVMLEQYIESGEL
VRILNNWSANPREVYLLYNHRDYQPEKLRLFIEFASGFFTLS
>PBPRA1129 CV2087, putative transcriptional regulator
MESKDTFSISQLADEFGITLRSIRFYEDRGLLTPTRKGKVRVYSKQDRAR
LKLTLRGKRLGFSLIDISELFEFYDSNKSNKKQQQDMLNAIKHRQQLLIQ
QQADIDAVMMELNAAERNCYLQLAKFEQQNNKPLSKRCIIPAKLHRYR
>PBPRA1396 CV2939, hypothetical transcriptional regulator, LysR family
MVVFNALTKQQSFTRAAQLLDISRTQVSKQIQQLEERLGVQLVQRTTRSF
ALTEAGRSFSVHCANVVGEINEAESELLSETDSLQGALRVGIAQSFASNH
IAPFISEFHDLYPQLDLEMSLFDYRVDLIAEQLDLWIGFMDSPPEGFVAR
HLIDCNFLLAASPAYLAKHGVPYHPNDLKGHNCITYFSRERKDNVWSFRK
EEESHQIKVKGNYRVDSADSIRDATLTGNGIGYLATYLLKDELQKGQLIR
LMPDWDLTQYMPLYAVYPRHKYLPQKVQVFIDFIRSHIGKPAYWDRSIF
>PBPRA1728 CV3482, putative transcriptional regulator, LysR family
MNLRHKSVDANKLIAVMPDLAVFIIVVDEGSYTAAAKKLGVTPSALSKQI
SRLEKALSVKLLERTTRKLMISESGTKIYEQCKVMTNAAKQAVEIASSEH
TIPSGTLTVAAPKAFLSIVLQPLVTPFLTQYPDIQLKLKASDGEIDILSE
GIDIVFRLTEHPSEALVNKKIGKVNLALCASPEYLALRGEPQIPTDLRQH
DCIYLGETTTDHIWDFIKDEEFQSVSVTGRYAVNHSQMRLKGVIDGLGIG
IFPDFVIKQALENGSVKEVLKDWTMKGNYQGDIALQFAQTKFMPARLRAF
IDYVTEHLAP
>PBPRA1011 DING, putative ATP-dependent helicase, DinG family
MLHSQIKSDIKQCYENLGNQLDNFIPRRAQNYLVAEIAKTLAGEYHQKHR
MLVGEAGTGIGKSLAYLLGGIPFALFNNKKLLISTATVALQEQLINKDLP
LFNRIYPKEFSFILAKGRQRYCCNHKLEACCATNNDQQVTLWEEKPKKSD
LDLLRRMLKATRDGKWDGDRDSWPTTIPDRVWPQIMADKHSCHAGLPQHR
SCPFAKAREHLDKADVIIANHALLMADIELGGGVILPEPEQTIYVIDEAH
HLPKVARDFSSAASSLKGAATWLEKLNQTIGKLAELAEYKKAARFQDAIL
ENIQHLIPTLRQVANNVDVGMFSKDGIYRFEHGELPAWLEQEAKGCKDAS
KKALQSLGKIHDLISERLKDNEIQQRLGEQALAESGVYLQRLENLEKVWA
LMAQPKKDKGAPLARWIEKNPDNEGDYIIQVSPLEVGYRLDQLLWSRAAG
AILVSATLRALNQFTYFCRQVGIYEMDSTRFLALASPFDYQNNARLVIPA
LSLEPQADKFTDLLIKTLPEYLEGETASLVLFSSYWQMNKVADELRPLAK
KNKWELLVQGEESRHITLKKHKDNCKSGKPSILFGTGSFSEGLDLPGDLL
KNLIITKIPFGVPTSPVEEAHAEYIESCGGNPFMQISVPEASKKLIQSVG
RLIRKEDDMGRVVLLDRRIINRRYGKALLDSLPPFKRVIEYS
>PBPRA0390 EBIG1361, putative arginine repressor
MRNSDKQERLIKAFKSILKDEKFSSQGEIVDALKAQGFDNINQSKVSRML
TKFGAVRTRNAKMEMVYCLPIELGVPTTTSPLKELVMEVGHNSALVVIHT
GPGAAQVIARLLDSLGKAEGILGVVAGDDTIFITPTNTTTTEELFNSVCD
LFDYSI
>PBPRA0585 ECS0018, putative transcriptional activator protein NhaR
MSHLNYNHLYYFWMVCKQGSVTKAADALFLAPQTVTGQIRALEERLKGKL
TKRVGRNIEPTELGQLVFKYADKMFDLSYEMLDIVNYTQRENLLLEVGVA
DALSKRLVSKILLEGVPDDERIQLRCFESTHEMLLEQLSQHKLDMILSDC
PVDSGKSPGLYSKKLGESSMSFFCSVPAKPVDFPACIEDYKLLVPGRRTA
MGRKLHQWFDQQGITPNILGEFDDAALMKAFGSYHRSMFVAPSIYAEEIE
ESNTIRELKRVKDIKEEYYVIFAERMIMHPAVKKICEADFSKLFK
>PBPRA0423 ECS0080, putative transcriptional regulator, LysR family
MTRRSSSIHPTDNYTMESNLRSVDLNLLTVFDAVMQEQNITRAAHNLGMS
QPAVSNAVARLKVMFNDELFIRHGRGIQPTQRAKQLFGPIRQALQLVKNE
LPSSIFSPETSTRTFKLALCSPSDMRFAPRIFRDITEQAPSIRMQLEAEL
DAELTQKMRYQEIDFVIDYVRFDEPGFCSTELFSDELVVIAAGNHPRIGD
SISEAEFTSEMHAVLKSMPGVKMFADHIYNKQVSCQQAYQGASLSNIMYV
VGQSELVAVAPRWLAESVAENLQLKVLPLPFESATVSGYLSWHESSQKDK
GHIWMRDQLLSICGDTTA
>PBPRA2392 ECS1492, putative transcription-repair coupling factor
MKALSLLSLPLPSKKGDNRFIGNLSGAALALSVAELSHAHQGPILAVVPD
TQTALRLQPEISQFTSVEVNVFPDWETLPYDNFSPHQDITSDRLARLYKL
PTQSDGIILVPISTLLQRLTPRDYLRKHALIVRNGDRLSLDKLRLQLEAS
GYRHAEQVMEHGEYASRGSLLDLFPMGSNQPYRIDFFDDKVDSIRQFDPE
NQRSTGEIDSINLLPAHEFPTDEIAIENFRMRWRERFEARREPESIYQQV
SKRTWPAGIEYWQPLFFEKTETLFDYLPDETLLVTLGELEPSVDHFLADA
DHRFDQRRVDPLRPLLEPKELWLTKDEMFRGFKTLPQVRIRHENEPDKAG
RYNPTLTPVPEIIINQQLKEPFAALRRFTEQFKGKIVFSVASEGRREALL
DLLARIKMRPIVCASLEEAIEAPSDYTLVIGAAEQGFILESPSVAFICES
DLLGERVNQRRRRDNKKSINADTIIRNLAELQVGQPVVHIDHGIGRYQGL
QTLEAGGITTEYVMLEYDAGAKLYVPVASLHLISRYSGGADDSAPLHKLG
GEAWVKARKKAAEKVRDVAAELLDVYAKRELKPGFKFTLDRESYADFCSG
FPFEETHDQALAINSVLSDMCKPRAMDRLVCGDVGFGKTEVAMRAAFVAI
DNNKQVTVLVPTTLLAQQHFENFRDRFANTAVRVEVLSRFKTAKEQKQIM
LDAEEGKIDILIGTHKLLNASVKYHDLGLLVVDEEHRFGVRQKEKIKAIR
ADIDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVREKDDA
IIREAVLREIMRGGQVYFLHNEVDSIEKTTEELAKLIPEARITFAHGQMR
ERDLEKVMGDFYHQRFNLLVCTTIIETGIDIPTANTIIMNRADNLGLAQL
HQLRGRVGRSHHQAYAYLLTPHKKRMTKDAVKRLEAIESLEDLGAGFTLA
THDLEIRGAGELLGDEQSGQIQSIGFSLFMEMLEQAVEALKEGKESSLDD
LLRKQTEVELRLPALLPDDYIPDINMRLSLYKRIASAIDEQDLNDLKVEL
IDRFGLLPEATTNLLTVNNLKLKAAAVGIRRIEAGEKGGYLEFEQDAAIN
PVFLVGLLQSKPQHYRMEGPTKLKVMAPMTNRKERIKFVDQLLTQLSENT
I
>PBPRA0430 ECS3950, putative DNA-directed RNA polymerase, sigmasubunit
MEQNPQSQLKLLVAKGKEQGYLTYAEVNDHLPEDIVDSDQVEDIIQMIND
MGIKVVETAPDADEIMMTEDNTDDDAIEAAAQALSSVESEIGRTTDPVRM
YMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPSAISYLLEQFDK
VEADELRLTDIISGFIDPNEEQTAAPTATHIGSELSETDLADEDKNLETD
DDDEEEEDTGIDPELAREKFLELRHSYEKMALAINTHGRHNATTEVAVGE
LSEIFKQFRLIPKQFDKLVRSLRDSMDKVRTNERLIMRMCIDNSKMPKKT
FIKFFAGNESSPDWIDEALNSGKPYAERLKNYEEDLRRSSLKLRILEKET
GLSIERIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQF
LDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIR
IPVHMIETINKLNRISRQMLQEMGREPIPEELAERMQMPEDKIRKVLKIA
KEPISMETPIGDDEDSHLGDFIEDNTLQLPMDAATATNLRAATNDVLAGL
TPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHP
SRSDVLRSFLDE
>PBPRA2083 ECS3957, putative regulator of ebg operon
MATLKEIANEAGVSLATVSRVLNDDPSLSVKEETKRRIFEIAEKLEYKTS
SSRKVSTKQRLNVLAIYNYKQDVEFNDPYYLSIRHGIETQCEKLGISLTN
VYESKVNNKLKHIDGILLVGRLPNEQLATVKALSTNIAYVDYTDFDQDFD
SVDIDLARISQEVINFFIAQDYNRIGFIGGQDCANKSDVREVAFTEYGQL
KGVVSSADIHRGDFTSSSGYKLAKKMLAGDHPKALFIASDSIAIGVLRAI
HEQGLSIPEDITLISVNDIPTAKFTFPSLSTFRIHSELMGSQGVNLLMER
SRDGRTIPIRSYVPSKLRLRDTTKK
>PBPRA2039 EF1676, hypothetical transcriptional regulator,GntR family
MNDWNDELPIYKQLSQRIVEQIADGTWLEGTALPSVRAVAADLKINHLTV
MKGYQLLVDQGLIEKKRGQGMYVLPGAMDVIQENQKSYFLQKELPDLVDK
LNRIGLSIDELVIELEKNGRVKSGSID
>PBPRA1296 ENSANGG0, hypothetical transcriptional regulator
MFVSRSIKLKIAQIEIFLHASKTGSITEAARKLNKSRTTVSASLCALEDD
LGVKLLARTGNRIQLTDIGESIANDCTRLLQIANDIKRKCTLHIDGVESV
VRIARDDALPETFWRDTLNRLKERFPNTSISIYAATPPELENLVEQDAVD
VAYGLLPTEYRIPRLLHFDLGQIRMMSVAHKDHPLSQLRKVTREDFARYT
EIILAYIEDDNLKTDIPNSTNYIALAFYEYLSHAVLDGTGWSNVPALLIN
DHLRQGTIKVIKHNKAMSWQPYGEIVESESRRGLVIQWLSEQLEDYLLDV
TD
>PBPRA3411 FIS, putative factor-for-inversion stimulation protein
MFEQNLTSEALTVTTVTSQDQITQKPLRDSVKASLKNYLAQLNGQEVDDL
YELVLAEVEQPLLDTIMQYTRGNQTRAATMMGINRGTLRKKLKKYGMN
>PBPRA0897 FLGM OR, putative negative regulator of flagellin synthesis FlgM
MASIDHLRNSQPMTTARNNQSKVTTTSSGSQPTSAPSLGRQDAVSLSSQG
KAVGQIHQQLATEPSFDSAKVAAIKEAISSGAYVVDADKLASNMMKFEDE
LRGL
>PBPRA0500 GALR, hypothetical protein
MQFFHENNVSVPQQVSLVSFDSIDRCASFYPTVSAVHFPISKMARVAVEV
LINLIENKDISIDCHFEPQLVIRHGDRVI
>PBPRA2990 GCVA, putative transcriptional regulator, LysR family
MSRRLPPLNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGL
KLFRRRNRSLLLTEEGQSYFLDIKDVFSAISEATDKVLERGAKGALTISL
PPSFAIQWLVPRLADFNEQHPEIDVRIKAVDLDEGSLTDDVDVAIYYGRG
NWTGLRADKLYQEYLLPVCSPMLLAGIKPLRTLSDLKLHTLLHDTSRKEW
KNYVRHYELTDINVNQGPIFSHSTMVLQAAVHGQGIALGNNVLAQPELDA
GRLVCPFDEILMSKNAFYLVCQERQAETGRIQAFRDWVLAKAAREQEDIT
DA
>PBPRA0601 HD1699, putative transcription elongation factor GreA
MGCTEVVIFMEKVPMTVRGEQTLREELEILLKRRPIISKAIGEARELGDL
KENAEYHAAREEQGICEAQIRDIEYKLSVSQVIDVTKMENTGKVIFGTTV
KLIDINTDDELTYCIVGDDEADIKKNLISVNSPIARGLIGKLEGDEVSIH
TPGGVKEFEIEQVQYL
>PBPRA3126 ICIA, putative transcriptional regulator
MAMRGVDYRWVAALDAVIAQRGFERAAEKLCITQSAVSQRIKQLEKLMAQ
PLLVREQPPRPTAAGQKLLGLYRRVRLLEQEVLPEITPDDISQPLSVALA
TNADSLATWLLPALSPLLKSRFIELNLLVEDEARTLDKLRSGEVVGAISM
EAGVIPGCVADYLGRMNYLCVASPDFQQKYFSNGVTQANLVSAPGVVFDH
HDDMHEVFVQQYFNLPIGSVMKHTVRSSEAFVRIATEGIAYCLIPEVQIQ
RELDRGDLVNVTPELSLVRNLYWHHWALESGVLTELSERLIQYARQALPQ
>PBPRA0986 IRLR, Putative two component response regulator transcription regulator protein
MKILIIEDEIKAGQYLKKGLTESGYTVDLASDGVEGLYHATSHSYDLIIL
DIMLPKLDGWQILKTLRSSEMSTPVIMLTAKEQVEDRVKGFELGANDYVV
KPYAFPELLARIQNVFRNHSPKSKNISQSNTIVIADLQLDIIKRTATRNN
QSITLTAKEYLLLELLMRKQGEVLSRTTIASLVWDMNFDSDTNVIDVAVK
RLRSKIDRPFEKELIHTIRGMGYKLEDIEEQ
>PBPRA1349 LL1138, Conserved hypothetical protein
MMNTKHDILDFIEKLSAMSTSTLTMKDRVDIFNQLSDLSSTIVGLDHPVL
NVKLVSTSQVQDNDYNPNAVAPPEFRLLKHSIKKDGLTMPIVVGRKRDEE
GYVIIDGYHRTKIIKNDLAVNASLANYIPVVILDRSLDDRISSSIRHNMA
RGAHQVELTASLVVKLKEMAWTNEDIGKELGMDNDEVLRMQQITGLAEAF
KNQSFSNAWE
>PBPRA0714 LMO0547, putative transcriptional regulator, SorC family
MSANTNDSPHVDSDLLTEIAIAYYQDGATQEEISKKFGMSRAKVGRLLRR
AREEGVVDITVKYHPVFSEKLEQQLIERFNLKRALIALDQPDDKTQRQQV
ASLVSSYLATILTDEMVVTVGQGRNIASIASHVGVVPHKKCRFVSGIGGT
HRSGNAINADHICRLLAKKYDGISETLYAPAYVEDIRVKEAFMKNGTIKE
TLDRARRADVALVGVGDMNENSHMVKLGWFTPQEIVEARIRKGVVGDIAG
YDFFDSQGNQADTMMSDRVIGLSMEELRHIPTVVVSAAENSKALALLGAL
RSGVVDVVATSVSNALTILNLDQQMK
>PBPRA1976 MERR-2, hypothetical transcriptional regulator
MQALYICWLRGFKLYIGEASKRSGASPKAIRLYESLGLLSNIKRNGSYRI
YDESDVEFVRLIKEAQMLGLSLSDLKELVVGRNELNWNAVIEILHKKEDE
AEKEIACLTIQMKKIEKYRLNIQKCLDCH
>PBPRA2249 MERR2, Hypothetical merR protein
MLVQPQKPTEGFRQYPSEVLQRLRFIKRAQELGFTLDEIINLLTLGDGDC
LEVQSLAKQKLVLVSKKIADLQRLESNLSHLIDQCSSTSDLSCPIVDSFK
E
>PBPRA2332 MLC, putative transcriptional regulator, ROK family
MYVAQPGHIDHIKRNNAGSVYKLIDLFGPISRIELSKRSLLAPASITKIT
RELIDAHLIKEAQCQEPLSRGRPAIGLLPANEGWQFLSMRLGRGYLTIAL
HELGGDILVEERQEIEELQQEAVIDKLLSEINIFFANHVSELDRITAIAL
TLPGLVNSQEGIVLQMPHYDVKNLALGPTIHEATGLPVFIGNDTRSWALA
EKLFGNSRGVANSILVSIHNGVGAGIILDDKVLQGSTGNVGELGHIQIKP
YGKRCFCGNHGCLETVASLKAILEQVEQRLKEGHPSCLHGTTLTIESICD
AAVAGDTLARQIIIELGHHLGQAIAIMVNLFNPDKILIGGEFNRAKSVLY
PAILECIRNQSLPVYNRDLIVEESCFYTQATMPGAALVKQAMYDGHLLMK
LVDG
>PBPRA1654 MM0481, hypothetical protein
MEIKIFSEQYRNALRSIYLESRKSTFTWLETSTYQLLDFDQDTEEERIHV
ALEGDDVLGFISVWEPDNFIHHLYVSDHANGIGVGTQLLETAKNLSDKPL
TLKCMNKNDMALKFYASKGFVIASQGSNDYCDYYVMTNRL
>PBPRA0264 MTV005.1, Putative transcriptional regulator
MSLPHVILTVLCSRDATGYDITKEFSHSIGYFWKASHQQVYRELNKMAGN
DQVTCQLEPQDGKPDRKVYSITDLGRQALFEWFQEPARNPTIRDEFSAKL
LVCGVHNSEPMQQQLEALIEESHTLMGHYAELEKIHFANHKEMDRQSRLD
RLTLRRGVHNRQAWIYWAEEVLAELKDMDSTDSNVQIN
>PBPRA1029 NAGC, putative N-acetylglucosamine repressor
MTGGQIGNVDLVKQLNSAAVYRLIDLQGPISRIQVADVSHLAPASVTKIT
RQLLERGLIKEVAQQASTGGRRAISLTTESAAFHSIAIRLGRNYIEITLY
DLSGKHIASAAHNFYYTTQQELTDGLLSHIRRFISGNQNVIKELVAFGIT
LPGLIDPEKGIVEYMPNIDVNNFPLADTIKDNFGVICFVGNDIRGLALAE
HYFGSSKDSKDSILVSMHHGTGAGIIVNGQIFLGFNRNVGEIGHIQIDPL
GDKCQCGNFGCLETVAADPAVVTHVQQLLDQGYPSSLQELDGITMLSICE
AANNGDELASQALIKVGNQLGKALAMTINLFNPQKIVIAGNITQAKDVVF
PAIRRCVETQSLSTFHKDLPIVASELYNQPTIGAFSMIKRAMLNGVLLQR
LLED
>PBPRA0801 NUSB, Putative NusB protein
MKPAARRNARHFAIQAIYSWQITKGNVAEIEQQFLSDDKFEEEEHQADAP
ILAAPHTDLNYFHDLLNGVVQNHQELDSKMRPYLSRPLQDLDQMELALLR
LAMYEMTKREDVPYKVVINEAIELAKIFGAEDSHKFVNGVLDKAAPTLRK
K
>PBPRA0273 OXYR, putative Hydrogen peroxide-inducible genes activator
MNIRDLEYLIALSEHKHFRKAAESCFVSQPTLSGQIKKLENELGVSLLER
TSRRVLFTDAGLTLVAQAQKVLLEVKVLTELASQQGESMSGPLHIGFIPT
VGPYLLPLIIPMFRESFPDLELFLHEAQTSQLTHLLEEGKLDCILLAAVK
ETESFIELPLYDEPMVVAVPDTHPWAEKDEMDMASLHGETLLMLGDGHCL
RDQAMGFCFAAGAKEDGRFKATSLETLRNMVAAGSGITLLPQLATPKERS
RDGVCYIKVHDPIPTRLITLCYRPGSPLRTRYEKIAAEIKDRMVTYFEQ
>PBPRA2732 PA0133, hypothetical transcriptional regulator
MKPIDNLDIRLLKLFLIIADSGGFSAAQYQLNMHQSSISKKMGDLETRLG
MTLCQRGRSGFKLTSDGLKVYEASKQLFDCIDDFQVKIDEIRNVSSGSIN
IAFTDNLATNKNCRIQTAINTFCNTHSKVNINTQIYDSSLIEKSILENKL
DVGITSPEVLKSGLKYIYIFNEKQQLYCSPSHLILALNREVTVEDILVHP
VVDRGLTHHVTPLSYASEHLYKSTTTNMEATAHMILSGHFIGYLPDHYAQ
IWIERDEMVRISAIHGLEYTPSFYLTINEKNDLSYATKALVTAILDAHDV
NTNFE
>PBPRA3444 PA4279, hypothetical protein
MQLLIEAGNTYVKVAQLFESGKFELLGRYPRRKLEMVLEPLLEKGIHRIV
FASVGPVEVDNSIQRIAQLANIPVMQVKTLRKDFGVKNAYSEYQYLGVDR
WLTLVAIRQKFKKPTVIIDIGTALTFDVLAEDGKHLGGWIAPGYQLMMQS
VLENTCKVFSDREHGECITFSDNTADGLKNGCRAALIGLSNTV
>PBPRA3597 PAB7155, Hypothetical transcriptional regulator
MENVKSRTATKIREARERKDITQVAMAKALGLARQTYLDLESGKTEPRIS
TLVSIADITGRPLIWFIYEDEGLISSEDKNDIQVLLDLFAQVPRSMRSKL
IEHNMSFVSCWIDYVASVKRK
>PBPRA1872 PHAD OR, hypothetical transcriptional regulator
MKTRDRILSVSLDLFNRNGISQVSTLIIATEMGISPGNLYYHFRGKDEII
ATLISELQNSVSTISNEYPKQVQDFDDYWPFMHTVMALFTHYRFMFRNLD
NLNGQNPQIKRKIRSLILKLRQLSSDMLAHLVSLGKLQCDNNSLPLLSDN
LLLVSLNWLNYQTLLDDKYSETELIRAGVLRLISMVEPYLTESARSPFYT
HQDLLDELVN
>PBPRA1161 PLU1600, Putative leucine-responsive regulatory protein
MDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGYISGY
TALLNPQFLDASLLVFVEITLNRGAPDVFEQFNKSVQELEDIQECHLVSG
DFDYLLKTRVCDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQTNNLVI
KTR
>PBPRA1208 PLU1968, hypothetical D-serine deaminase activator
MQLPKLTGSVLSGLHCFLIAADQMSFTRAAEVLCLTQSAVSHKIKNLEDS
LGVKLFIRQPRKVILTDEGKRLKAVVAQNFGDIAHEIRDLKTLELSGDFN
VSAPPTFAQTWLMPRIKSFIDKYPALRLHLRTRNDLIDFQTETFDCAIYF
GHGKYAGLHSEKLMDESMLPVCTHEYALRYNLYDRPDNLVMCMLLHDAAP
WARAGRNDEWQYWAQRQGITLPEVGCTFDRSDLALQAAERGIGVAMGRMS
FIAEQLANERLVIPFDMPVKSPLSYYVVCRQDMKSSPRVKAFQDWLADEI
ANVE
>PBPRA2109 PLU2605, putative transcriptional regulator, LacI family
MLLIQFGTAQVAFRSLTTIIRRINMATIKDVARMAGVSTTTVSHVINKTR
FVAEATQKKVLAAVDDLNYAPSAVARSLKCNTTKTIGMLVTKSTNPFFAE
VIHGVEEYCYNAGYTLILCNTEGNLVKQRDYLRMLAEKRVDGLLVMCSDI
DQDLLDLLARKSDLPMVIMDWGPESPLTDKIQDNAEQGGYVATKHFIDNG
HEKIGCLSGHSEKSTCRERLKGFNKAMAEAGITVNNNWIIDGDFECESAV
EAANQYIAMKDRPTAIFCFNDIMAMALISTFEQAGVRVPDDISVIGYDNI
DLAPYFSPPLTTIHQPKRRLGKTAIEILMERVKDKNHERRVFEMNPELVI
RKSVKDLN
>PBPRA0796 PLU3900, putative RibX
MHCPFCGANDTKVIDSRLVADGHQVRRRRQCLACNERYTTFETAELVMPR
VIKTDGNRDSFNEDKLRGGIQRALEKRPVSADDIERAINTIKSRLRATGE
REVPSDMIGNLVMEALKELDKVAYIRFASVYRSFEDIREFGEEIAKLEK
>PBPRA0084 PLU4669, transcriptional activator IlvY [Vibrio cholerae O1 biovar eltor str. N16961]
MNIKNLQLFLHLCDSKSFSKTAQKMHISPSALSRIIQRLEGDINQTLFVR
DNRSVELTSAGRKLLPVASSIVTSWIELKVELKDETHSLQGTLKMFCSVT
ASYSHLPSILNEFRLTYPQIEIQLRTGDPAEAIDKVISGEVDIAIAAKPE
IMPSKLTYIELDQIQMSVISPLIAPPAIQKHLTGNPDWQSLPFILPKSGP
ARSRADKWFKTKKIQPSIYAQISGHEAIVSMVALGCGIGIAPDVVINNSP
MSNKVQRLTNESIEPLSLGLCCKQSREKEPLLHALLQLF
>PBPRA0256 PLU4760, putative transcriptional repressor, LacI family
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKKVEQAVMEAGYSPNSL
ARNLRRNESKTIVTIVPDICDPYFTEIIRGIEEAAMEHGYLVLLGDSGQQ
KTRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPLVMACEYAPE
LELPTVHIDNLTAAYEAVNYLTQMGHKRIAQISGPDQAALCQFRSQGYQQ
ALRRGGIELNPAYTVKGDFSFAAGARAVTALLSLPEPPTALFCHSDVMAI
GAMQQAKRLGLRVPQDLSIVGFDDIQFAEYCDPPLTTVSQPRYEIGRQAM
LMLLELLKGKDVRAGSRLLDAKLVIRESAAPPSM
>PBPRA0231 PLU4794, hypothetical transcriptional regulator CpxR
MPRPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQ
LTENNQRANEPECISYQDINIYPGRQEVFCLGESIEMTGTELALLSYLIQ
HPGKIIAKNELSMEVLGKRLAQFDRAIDMHVSNLRKKLPERADGKPRIKT
LRGKGYLLVEEL
>PBPRA0849 PM1810, putative nitrate/nitrite response regulator protein
MTCWKIMIVDDHPLMRRGIGQLLSFEPDFEMIGEASNGTDAVAMAHEKNP
DLILLDLNMKGMSGLDTLNVMRAEGILASIVVLTVSDSRSDVKALVAAGA
DGYLLKDTEPDELISLLKQALCGGKAYSDIVREHLESNTEQDCLLSLLTD
RETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKLQVKSRTAATV
LYLEAQGQ
>PBPRA1572 PP0792, putative fructose transport system repressor
MTLDEIAKLAGVSRTTASYVINGKASKYRISEKTQVKVMAVVNEHNFRPD
HAATSLRAGSSRSFGLIIPDLENSSYAKLAKLLERNARKAGYQLIISCSD
DDPDTEMKVAETLLSRRIDALLVASVLPADNDFYPRIQTGGVPVIALDRA
LDDEIFASVISEDLEGAFELTQTLLNKGVNSIGLVGAVPELGVSKEREQG
FLTAIRRHQPDINMHIAYGDHFSQEQGQKQVQQWIDSEHFPDAILATSYT
LFEGILDCLLANPELMSKIHLATFGDNRLLDFLPIKIQSLPQQFELIADN
ALELALNAAAGRYRTGVEVVPRKIKRR
>PBPRA2473 PP2327, hypothetical cys regulon transcriptional activator
MKLQQLRYLRAIVNHDLNISAASKSIYTTQPGVSKQIGLLEAELGVKIFE
RKGKNLNAITSIGKQIIDEGMKMLAVEERIYAISRDYLNPEGGCLNIYTT
NTIARFLLPKTVNKFVKKHPDITFHIGAAHPDENGAIIKKGHSDFSIVAQ
DVERDKDLIVLPAYKWSLSLILPSNHPLRKEKDITLEMISKYNLISYESG
STGKIAQDKAFAEQGINPTYFMTAMDVDVIKQYVSMDLGIGIIATIAAKQ
ICDGDIVAIPLKGIIPDCDAWICYSRNVFLQKHMYDFIESFAPHLKQEVM
EVIAHSTNNEIVKISQEFELPRY
>PBPRA2834 PP2551, hypothetical transcriptional regulator, LysR family
MKSHNLNLLRTLQVLLEECHVSRTAERLHITQSAVSRQLTQLREVFNDTL
LIREGNRLLLTPRAEALKLKLDSLLAECNSLFEPVTFQPEQWQGKVVLSS
SDYVAQYILPEVVEHLREHAPLVSVAYQLWSPKQFEQLADLDIQFVSTML
SAIPDGLCGEPIGADYPVCVMRSDHPLATADTLQLNDFLYYDHASVTGGG
DKDSFVDLRLAEQGLSRRVKLSVPFFTSALNTICRSDMLLVIPEHIAVNM
KQLFPITYFPLPISVPEHKYWLLWHPKYNNEPSHQWMRTLLLTTMRSSMY
SMPMINNHEADELF
>PBPRA2119 PP2952, hypothetical transcriptional regulator, LysR family
MNTTDLELFVRTADIGNITAAAVQLDISPAAASAALKRLEKQLGTELFIR
STRQLRITAEGERFLLHCRQALSSLDDAKASITEMKGEIAGEVRLSVSSD
LGRNLILPWLDEVMDNNPKLSFQLSIGDSLADFYMDKVDVALRYGQPEDS
TMIAFKLATVDRVICASPAYIATYGSPQKPEDLLHHNCLLYQLGNKTYNQ
WDLFSKNSDDTISNTDDSIKSKYKIKVSSNRMCNDGDIVRRWAVAGKGIA
LKSRLDLSHDLNAGRVVELMPDYYVKPTSLWLICPSRKQVTPAILLLRDL
LRKKCQALLASKK
>PBPRA2308 PSPTO009, hypothetical transcriptional regulator
MTASTSKKYHYVEQYITQRIDQGSYQVGDKLPSIRELSEQLAVSKNTVIR
AYQELEAISIISSLPRSGYVVCQPTQPASQPANEPSYVDLMAISKTILKH
SLEQYSMPAGSAHPNTDFPAIRSLYAEIGRHSRYQTAIPCHYQMPPGNEI
LVKQLVHINEELGIITSPNKILITHGAQQAISLSLQALTQPGDIVLVDSP
CYFGTLLLLESLGLKALEIPTNTTTGIDLVELSKALKQWTVKAILLNPSY
NNPTGAVMPDSARRALLNLTTGIPIIEDDVFGGLAYQNRPKTLKTLDTEG
RVIYCNSLSKTLDSRLRIGWVLAGKYQHQIEKRLISDNMGSLNLMQSAVG
EFLTTGKYRQHLNKIRRCYRVNQRDFAACLTHAFDRCPSLKGQYHLSKPE
GSFLCWLTLPQHADGFVIYQAALAAGISLLPGKMFSTQGQYNHCIRFNFA
NFQNNRQWQQGLTLLAGIIAAHLEEIAYTKEGK
>PBPRA0221 PSPTO041, putative transcriptional regulator
MKTRDRIIQAALELFNESGEPNITTNHIAAHLSISPGNLYYHFRNKEEII
HCIFDEYARDISTRFQPKAEFDATAESLLVYLDAVFMLMWRYRFFYANLP
DILSRDQALQCKYLQAQEQLHTNIVLLMNSFKSSELLDLDDGELLSLANT
LKLVASSWIFYQTTQVPGAKITKTVIYQGVLQVLSIVRPLTTVKGRERVK
QLELHYSEQVQHDLT
>PBPRA0047 PSPTO197, Hypothetical flagellar-specific transcription initiation factor sigma, LafS
MHSAAMSYDAQGLHAYQKSHQLGQKAREQRLVNKHASLVKRVVRHLTAQV
TTVMSLEDMEQIGLMALLDVIRRYSDENDASLERLAVQRIRGAILDELRR
MDWRSRRSRQKSHELRDTERALGRQLGRMPTDQEVAAELDIELGDVKQRR
VDTQAESLTSMDALQEDGEQFFGLSFQCNSYERVALKKAMAQALARLSKR
EQVMLSFYYEHEMNLKEIGLVFELTEARVSQIHKKALKSLNSMLTDWRES
V
>PBPRA0939 PSPTO197, Putative flagellar-specific RNA polymerase sigma factor, FliA
MNKALAYGQYKESPQAFIERYSSLVKRIAYHLMGRLPPSVQVEDLIQSGM
IGLLEAQQNYDPTKGASFETFAGIRIRGAMLDDIRRGDWVPRSVYKNNRR
ITEAMAQLENKLGRDPTDTEIAEHLEMTLDQYHQALNDVNCGRLVGMDDL
GVSEDAVTTEASREENLPFQGVVDDNFRQSLADAIKTLPEREALVLSLYY
DEELNLKEIGVVVGVSESRICQIHSQAMQRLRSKLTAWAA
>PBPRA0466 PSPTO300, putative xylose operon regulatory protein
MNKRFRITLLFNANKVYDRQVIEGVGEYLQASQCDWDIYLEEEFTTHIEN
FHAWKGDGVIADFDNPDIMALLEHSDIPVVGVGGSYENSQDYPDVPYVAT
DNQALIELAFQHLRNKGLENFAFYGMPQDSWKRWAHEREKAFKHVVQSAG
YSCSVYRGNDTSPQTWQYDMNRLADWLQRLSTPIGIIAVTDSRARHLLQV
CEHLNIMVPDKVSVIGIDNEELARYLTASITELCRARL
>PBPRA3598 PYRAB062, Hypothetical transcriptional regulator
MTDSKAKIAARIKEAREWKGLTQVHMAQQLQVARQTYLDLETGKTEPKVR
LLSEISEITERPLTWFVYGDEGIEILESEYKEEIDRLLQYFSRLPHSARN
IILQQSINLAGFMAEYTKALTNKRK
>PBPRA0736 R00763, Putative transcriptional regulator, LysR family
MSKFPSLKQLHYLVTLFETRHFGKAAIKCFVSQSTLSSGIQNLEELLNCQ
LIERDNKSLVFTSTGEEVVIRSRELLARSQDLMELSSGAGDGMEGQLRVG
CIPTIAPFLLCDLVQEVNRMHPNLNLLLREDTTTNLLAALRNGEMDVLIL
ALPIDINNMHSKIVGRDAFKMVISKNQAEKVNVPLRYADLPDESVFLLEK
EHCLTDHAVSACKLTTKEKINPFTATSLHTLVQMVANGLGTTFIPQMAID
HGLLDNQNLVVIEPPGQAAYREIGLVWRPTSSRIKTFNGLADIVEGLL
>PBPRA2242 RA0906, putative transcriptional regulator, GntR family
MTSLSKSVQKKSKTKSPNQTQDDVVYCHIFDAILEQRLPPGTKLNEEALS
EIFSVSRTIIRRALLRLSLEQVVVIRPNRGAIVAAPTIEEAKQIFKAREV
MELAITELAVENATQEQIKQIRKLVTAELNAFEKGDFGSGIRLSGEFHLK
LAEMANNAPLLNFQRSLVSQTSLLIAQYEVGNNANCSLDEHTILLDAIEA
GDKEKALSLMAEHLNHIRSKLSLDGETASNDLHVVFSNVIKSNALNKA
>PBPRA0465 RB1454, hypothetical protein
MRILVPPTQVFERQRTDFQAIKDTYVIQAMRFTRLNACKGIKVDQVLSYV
GISRSNMEARFKEERGHSIHPEIHNSKLKRAGCLLKTTSLPIVEIHICVD
TLPCNTCIPFLKRT
>PBPRA1748 RHLE, putative ATP-dependent RNA helicase, DEAD boxfamily
MSFQALGLNTQLVDTVTELGFKTPTPIQEQAIPQVLAGDDIMAGAQTGTG
KTAAFGLPMIQRLLASQQSEHDEGYIKKPEAIRALVLTPTRELAQQVHDS
ILAYSKNTSIKVAVAYGGTSMGVQVKALKSGVDILIATPGRLLDHAFTGT
VDLSKIECLVLDEADRMLDMGFVVDIKRIMQRMPRKRQTLLFSATFSNQV
KKLAYDILADPKLIEVTPENITAESVTQMVYPVDKHRKRELLSYLIGSRN
WNQVLIFTKTKQGSDELAKELILDGIKAVSINGDKSQGARQRALSDFKEG
KVRAMVATDVAARGLDIEQLGYVVNFDLPFQAEDYVHRIGRTGRAGLTGS
AISLMSIDEEWALRAIEELLDTRLPQEWLEGYEPDPTIKAQDNRRSSSTS
EKRRIKAKSKIHKNRGRNQTKR
>PBPRA2059 RMAB, transcriptional regulator
MSTSFDRQSSLGWLINVVANKLKNDFDTELKKHGLTIALWPTLMCLWEEE
GVTQREIAIKSKVESSTTTRTIDKLERLNLVERRDDPQSRRSFRIYLTDE
GRALQSTLIHIPVDINESMLSSLDSEEQEKMLSLLKKLVNNIDV
>PBPRA3089 RNC, putative ribonuclease III
MTSPANRLQRRLGYQFNSSELMTLSLTHRSANGKHNERLEFLGDSILSFV
IADDLYHRFPHVDEGDMSRMRATLVRGKTLAELGREFELGDYLLLGPGEL
KSGGFRRDSILADCVEAIIGAIYLDSDTEQVRKVILSWYQSRLETIQPGI
NQKDPKTRLQECLQGRRLALPAYTVTKVHGEAHNQEFTVQCEVTGLDKPV
IGKGSSRRKAEQAAAELALKQLES
>PBPRA3255 RPON OR, putative sigma factor N RpoN
MKTSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLELE
ENPNDSDSDSSDNDKNTESVSSEQNDSEGPTDTDSSDNIQSEPEPFDTSE
VIEQREMPEELPVDTTWDDVYSSGTGSTGIAVNDEMPVYQGETTESLQDY
LMWQVHLTPFSETDLTIATAIIDAVDDRGYLTCSADDILESMGDEEVELD
EVVAVLKRVQQFDPLGVASRNLQECLLLQLATFPEDTPWLIEAKILLNQH
IDLLGNRDYRQLMGETKLKESELKSVMQLIHSLAPRPGNRIIASETEYVI
PDVSVIKNHGKWVVTINPDSVPRIRVNQQYAALSKTTRNSADSLFIRTHL
QDAKWLIKSLESRNETLLKVSRCIVEHQQDFFEYGEEAMKPMVLNDIALD
VEMHESTISRVTTQKYMHTPRGIFELKYFFSSHVNTDSGGECSSTAIRAL
VKKLVAAENQAKPLSDSKIATLLAEQGIMVARRTIAKYRESLGISPSNQR
KRLI
>PBPRA1001 RS00367, Putative transcriptionalregulator
MKILIIEDETKLGKYLQLGLNESSFATDWVNNGLDGLHQAMSPEYDLILL
DVMLPDLDGWKILTQIKTHYPTRPIIMLTARDSVEDRVKGLQLGADDYLV
KPFAFIELIARIQNQVRKNENVAAKTTLTIGDLHVDLLRRRVTRNDQHID
LTAKEFLLLELLVSREKEVLSKAFIASKVWDMNFDSDTNVIEVAIRRLRK
KVDDPFEFKLIHTLRGMGYVMESRE
>PBPRA0645 RS02875, putative response regulator
MTQFSTAIIADDEPLLRHHLNRSLAEVWPELEIVASAENGKEAWLKINEH
QPDVVFLDIRMPELDGMSLANKLKKMPTPPLIVFITAYDEYAVKAFEQSA
VDYLLKPIPESRLQTACTKLQHQLSMQQSEQKHPSNAQSQPDISALIQQI
QQLSTQSEPQYLAWIKASAGDDIHLIAISDVLYFKAEDKYVSVFKRLPNN
AAQEYIIRTSLKELLAQLNPDSFWQIHRSTVVNVATIEKVKKDLAGRMSV
IIDGQKLPVSRTAQSLFKGM
>PBPRA1401 RSC2327, Hypothetical transcriptional regulator, LysR family
MDRLKSMQAFVSVVQHGSFSGAAADCSVTPTMIGKHIKFLEVHLGTKLLN
RTTRKQSLTEAGQIYYLECKRILDDIAEAENSLQTLENKPKGTVRINSPV
TFGNIVLAPIVADFLQDYPEINIDFTLDNSLIDPLHDPFDLVIRIGELAS
SSLIAREIARYEMVFCASADYLSECGTPTSLDELLRHQCLGFSYGDVHAN
LALLLDTLAFDKQHTRLISNSGQALKVAALKGAGILLQPRLLLNDELSSG
QLVEILSSDTPKPMPVHLLYKRKALPLKTRAFVDFLLAAIHRTKKEKPWL
>PBPRA1895 RSC2497, hypothetical protein
MNLRQIEVFYAIMKSGSVSGAARMLHVSQPNVTRILSHTEQQLGFALFQR
IKGRLVATEEARLLQPETEKIYQXLGYFAFPHQ
>PBPRA3510 RSP1115, hypothetical transcriptional regulator, AraC/XylS family
MIDAHYQSFSFKRHYHLDYHLGLITQGQQQYFFNGAKHVAGPGQMVIMPP
DEIHDGQPKESAGYRVKVFSISPDWLTQQAEAVSGKDLFCFPQHKIADHQ
FFQQLTQLHTQLDNPLASQLAKDSLPIEYFSYLLTHYGKVQEHTVTKLGT
KDLRQLRDYFMAHLDQKISLNDLATLCDLSPSQLLRQFKKTTGITPYAWL
ARLRLEHAMALLRAGFNSTEVAYHVGFYDQAHFANTFKQTFGIAPSHIK
>PBPRA1271 RSP1186, Putative transcriptional regulator, rpiR family
MNCFLCCFSLFWQGDVNKICGVERKVITVTIEVDIVSRITERFSQLRDAE
KKVAKLVIDDLASAANASISQLADEAGVSEATITRFAKAVGCKNVRDLKM
KLAQSIAIGQRFIHESPDQSGIQGVYESIKNVININRKVVNEEDIATVVE
MLQGARQVLSIGMGGGSTMLSQELQFRLFRLGYAVTAYNDGLLARMVAST
ADSSDVMVVMSATGYTPEVVEPASIAKQYGLKVIAITAPNSPLAEISDVV
LPVVIQETDFIYKPSASRYAMMALIDVISTELALSHKRRSRDRLRRLKLA
LDSHRGGLDRQPLGD
>PBPRA3197 S0112, putative pyruvate dehydrogenase complexrepressor
MTYKRIRQPKLSDAIEQELERWILEGILSSGQQLPPERELAKQFDVSRPS
VREAIQRLEAKNLLTRRQGGGTFVTDKLWESFSEPLLELLASHPETQLDL
LESRHALEGLAAYYAALRGTEEDYTRIRDCHTRIEAAQQQGDFKAEASAV
MQYLIAVTESAHNVVLLHIIRSLAPLLEQNVLQNFELLNRRDSVAGKVRK
HRADIVQAIVSRQPEKAREASHAHLAFIEETLLELSREDSRRERSLRRIQ
QRKDGLD
>PBPRA1497 S1065, Putative DNA-binding response regulator TorR
MSHHVLVVEDEIVTRTKLVGYFENEGYQVSQAENGEQMREIMMVENIDLI
MLDINLPGENGLLLTRELRSRSEVGIILVTGRTDSIDRIVGLEMGADDYV
TKPFELRELLVRVKNLLWRMDLVEKARSETLVEIHEDNIIRFSDWQFDIN
RRALTHNGQPVKLTKAEYELLVAFSSHQNVVLSRERILNMLSHRVEAPND
RTIDVLIRRMRSKMEVDPKNPQIFVTVHGEGYMFAGD
>PBPRA1070 S1535, putative ATP-dependent helicase, DinG family
MIKSFFAAKGALDKAIPGFQARQPQIDMAQAVDDAICNKTQLVVEAGTGT
GKTFAYLVPALARGKKTIISTGSKNLQEQLFHRDLPLMMRSLGFTGRVSL
LKGRSNYLCLDRLSRQMTESHGVHADPTLLSQLIKVRSWSSATKSGDLGE
CDSVAEDSPVIPMITSTNDNCLGRDCPSFDDCFVVRARRKAMESDVVVVN
HHLFLADLAIKETGFGELIPEAEVFIFDEAHQMPDIASQYFGQSLSSRQL
QELAKDVEIAYRTEAKDMRQLQKTADRLTQAAFDLRIVLGEPGFRGNWRD
AMKAPAVQRELTRLNDALDLTYDVLKLALGRSQLLDAAFERATLLKARLN
RLCDTSIPGYSYWFECTPRHFTLHITPLSVAEKFREQMALQKGAWIFTSA
TLAVDDDFSHFSHRLGLEPKQQFSLESPFDYQQQALLCVPRFLPEPNSFG
TADSLVEMLTPLIEANNGRCFFLCTSHQMVRDLAEGFRAKLDLPVLVQGE
TTKQKLLAEYLERGNALLVATGAFWEGIDVRGQALSCVIIDKLPFTAPDD
PLLKARIEDCRLRGGDPFSQVQVPDAVITLKQGVGRLIRDKQDKGVLVIC
DNRLVTRPYGAVFLRSLPQIPRTRDISRVGQFLSEVNGVDTPVTDDH
>PBPRA2765 S2371, putative transcriptional regulator, LysR family
MRYSLKQLAVFEEVASSRSVSKAADNLALTQSATSMALLQLEKMLGRPLF
ERQGKQMTLTYWGSWLRPRAKQLLFDAQQIEQGFYDQHIVSGEISISASQ
TAAEHLLPELISIIDKDFPELRIKLRVKNAQKVVDHVRDFECELGIIEGR
CDDSRIEQEVWCHDHLVIIASKYHPYAKLDKVSFAQLEQAQWVLREQGAG
TRQSFESALHGVIEDLNVWREYEQISVLRTLVTNGPYLSCLPFLDVVKHI
ERGELVALNVPELNMKRTLSFIWRADSIENPLRDCIRREAIRMIKDRKLE
M
>PBPRA0187 S4077, putative ATP-dependent DNA helicase RecG
MSGQLLETIALTELSGVGAKMAEKLEKVGLTSVQDLLFHLPLRYEDRTRI
WPIAQAMPGQHIAVQGEVLNSSITFGKRRMLTVRIADDSGSATLRFFNFN
AAMQNSLAEGKQVKAFGEIKRGKFGLEIIHPDYSVFAESVSLTGEETLTP
VYPTTEGLRQLTLRNLTDQALSLLDKAAVTELLPEGLYDRQMTMAQALHV
MHRPTPDVSLDQLEAGKHPAQHRLILEELLAQNLSMLAVRSKSQQHSAWP
LAACDNPADSLKEKLLASLPFSPTNAQQRVVADIEADLIKPLPMMRLVQG
DVGSGKTLVAALAALQAIQHGFQVALMAPTELLAEQHAQNFAQWLNPMDI
QVGWMAGKLKGKARETELARIENGEAKMVVGTHALFQNHVSFKNLALVII
DEQHRFGVHQRLELREKGANEGHYPHQLIMTATPIPRTLAMTAYADLETS
VIDELPPGRTPVQTVALPDSRRAAIVERIRTACLNEGRQAYWVCTLIDES
EVLEAQAASDTANDLTAQLPELNVGLIHGRMKAAEKQEIMRRFKAGELQL
LVATTVIEVGVDVPNASLMVIENPERLGLAQLHQLRGRVGRGKVASHCVL
LYHAPLSKTAQKRLGVLRDSSDGFVIAQRDLEIRGPGELLGTKQTGIADF
KIADLVRDQHLIPQVQKLARYIHEQHPNNAKAIVQRWLGQRENYSNA
>PBPRA0155 S4284, putative RNA polymerase sigma-32 factor
MSSMALIFAGSLDSYIQTVNRHPMLSAEQEKELAERLHYDGDIEAAKGLV
MSHMRFVVHVARGYSGYGLPIADLIQEGNIGLMKAVKRFNPEVGVRLVSF
AVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKSKKRLGWFNNAEV
EMVAEQLGVNPSEVREMESRLAAQDPAFELPNEDDDRDAGYTAPVYFLED
KSSDVALSYEENNWENHTNNRLSNALAGLDERSQHIVRSRWLDDEKTTLQ
DLANHYGISAERVRQLEKNAMKKLKEAVGDFY
>PBPRA0770 SF2737, hypothetical protein
MRAIRALHDAGLQVPQDISVLGFDNDPADEFTIPSLTTIMLPVEEMAYTA
IKQALQLIDKQEISPIVLFSGNLIVRESVDHL
>PBPRA0183 SF3425, putative transcription elongation factor GreB
MKTNLITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQY
NKKRLREIDRRVRYLRKRLEIVKVVDYSPQQDGKVFFGAFVEIENEEAEQ
KAFRIVGPDEIYGRNDYISIDSPMARALLKKEVDEEFEVVTPQGKKLWFV
NTIRYA
>PBPRA1223 SF4249, putative trehalose operon repressor
MTRKLTILDIAKLAGVGKSTVSRVLTNDPKVKIETRERVEQVIQESGFVP
SKSAQAMRGGSAKVVGVIISRLDSPSENKAVSGILDVIYTAGYDAVIMES
QFSAEKTNEHLSVLQKRNVDGVILFGFSGCDLSIVESLNHKAVVIAVDTG
RISSVGYDNYGIIELAMANLQQQGKQHISFIGVDPSDKTTGLMRLNAYIE
YCESANIEPIYQTGQLSHESAYVLTDHVLKPETEAIVCASDTLAMGVAKR
LQELDRSDVLVSGVGATDLLSFIFPNTFSIDPGYYAAGKASASLLIKQLA
GCHEVTHLTQKAMIAQ
>PBPRA2178 SMB20219, hypothetical DNA-binding response regulator OmpR
MWIFMDSSALPSLPHLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNEME
QCLRDNSIDLIVLDLMLPGKDGLTLCRELRVHSNIPVIMLTAMGEEVDKI
IGLEMGADDYLPKPFNPRELLARVKAVIRRFNAIPEGKSVRQSKVDSVEE
AQDKESYVYRFNRWCFDIGQRELTDNDGIAVSLTSAEFTLLKVFVEHPRK
VLSREQLLDLAKGRETDVYDRSIDTIISRLRKKLEIDHKKPELIKTIWGG
GYQLVCEVTHD
>PBPRA3181 SMCR, hypothetical OpaR
MDTIVKKTRTRLSPEKRKQQLLDFALDVFARRGIGRAGHADIAEMANVSV
ATVFNYFPTREALVEEVLLQVENRFSLLLSECLDEQDKTLHARLRGISHT
LIDAVIEQQDWLKVWFEWSTSVRDDIWPQFISGNKKSLKRIAAAFEQGKE
NNEIDSDNSSDDLAHLLHGLCYILYLQSNLHPDQDRMREQAERYINTLYP
AK
>PBPRA2169 SO0096, putative histidine utilization repressor
MAQSPRYLQIKQYLNDKIQTRTWPPGFKIPTEIELSEQFSVSRMTANKAI
RDLVGDGLLKRTPRLGTFVCHKKAESPLMEIRNIANEVRNRGHDYSSQVI
SQHSVEAKDDIALRIGVRNGTMIYFTQIVHYENGLPIQLEERWVNPDFAP
QYLDQDFTAQTPNEYLVQTCPLSDIEHTVEAIIPIGRIISLLEMNEGEPC
LLLNRRTWSDKNLISTALLYHPGNKYKLSSRTKV
>PBPRA2619 SO0193, putative transcriptional regulator
MVSMTLEQVKLFLNEHPHHELSLRKVAGMIGYVPSTLVNVFGNYNLLLLH
AVAQTLDELFAEAEAQMNSAMSPEDALRKLAYCYQEFAAAHPYRWQLIFQ
HTMNGDELPEWQSERINSMTSMLETLIRQITPQKSDADILEASRVLWAGV
HGITLLSVDDKLFTSVPVDAKALIDNLLNTYLNAWHA
>PBPRA3437 SO0219, putative transcription antiterminator protein
MSEAPKKRWYVVQAFSGFEGRVAQSLREHIKMHSMEDYFDEVLVPTEEVV
EMRAGQRRKSERKFFPGYVLVQMVMNDQTWHLVRSIPRVMGFIGGTSDRP
APISDKEADAILNRLQQASESPVHKTVFEPGEVVRVTDGPFADFNGVVEH
VDYDKSRVKVSVSIFGRATPVELEFGQVEKN
>PBPRA2320 SO0701, hypothetical transcriptional regulator protein, LysR family
MKTEDLKLFHQIVDTGSLNRASEIFDLPKSNISRRIKSLEEELNILLFHR
QNRALQLTEAGSKFYTKTKAMLIDLEASIQEITAPTYEVSGHLRIQLLPF
PEILDIGKMIFTFMDMYPKISVEIITSAEDKNMVENHIDIALRVGEGNTL
EDSSLVARPFKHASFGFFCTPEYVKQHGRPQTADDLRQLNVIRFRFPNGQ
IYGNLPFGKDETVEVSGNLVMNSVPLCMEACLQNRGIVFIPEDIGNYYLE
RDMLIRLFDHIEPSIKYGWLVYPSRKNLTLAARTFVEFILAEVEKEPICG
RIKTDVRGIVM
>PBPRA0481 SO0916, hypothetical transcriptional regulator, MarR family
MYRNYIYLRDHAMQPEELRQLSRQLVRQLGLLDNHCGLLKLTPVQAHTLI
ELEYAPCTVNQMADKLKVDKSNASRTLAVLLNLGLVESTPNPDDKRSQLF
RLTLLGQQTLTSLHTQLNLHVQTVLDQMDSDEISQLKSSLTRYNKAIHTA
HKQHGFTLRPLTPLDNASIAAIIRKVSAEYGLTADKGYGVADPTLDSMSE
VYQPDNCQYWVIEKDHRVLGGGGIAALSNIDGLCELQKMYFLNELRGKGL
ARSLAVKALKFAREYGYNGCYLETTENLTEAIALYESLGFVHIPHAMGDT
GHDACEVRMLKTF
>PBPRA1471 SO0989, hypothetical transcriptional regulator, LysR family
MNIQHLKAFVLAHQLGSISAAARTMGKRQSQVSQWISDLEIDFGVTLLER
TGNSIRLSAAGEELLPMMVHTVSQADKLTACASALSFEEPTLLRIGIDNY
IPQSCLQAVWVKALQQLNVNLEVSTNSRKALLVGLDDGSLDITLLTEHTT
LHYSDFDYCRLGSYRDVLVAGRSHPLISEPVVTADHLSANRELIWTREAM
TDDEEVGYSPTYATFTELASLVAVLQNGVGYVMLPYDQIAPYLATNQADQ
RLQVLSTDFEQAAMSRRVEAVWQHGLSQTEQGKLLLSLIKTEHALLVE
>PBPRA1367 SO1916, putative transcriptional regulator, LysR family
MNTRLLTYFVTLAETENFTRAAKRLHIAQPALSVAIKKLEQQLEFPLFHR
NERKISLTHEGEVLLKHARLILQQINDANIAMAELKGLEKGEVKLGVPSM
LGSYFFPEILMGFKSQYPNLKLTIIEAGTQSIRQMLLDGELDLGVIHNED
VPERLETEHLITSQMVAVVSEGHHLASLKDIGFEDFFKEELVMFKPGYFH
REFIDEVCQSHHFIPKISFETNLLPMILNIVRHNFAISALLELVTEHEKG
VIPIPFKQPVYLNIAMAWRRNGYLSLADRAFIDFVKKQCG
>PBPRA0298 SO2282, hypothetical transcriptional regulator
MTIMNIALIPNTSEHKSDPIYRQIADAIALQIDSGQLQPGSKLPTHRALA
DQLAVTVGTITRAYAEAERRGLVEARIGAGTYVCQANQPSWVYNYSEQEE
EECNFGYNIPPRLDRSDMLKQAMENIAAHPEQLNQMMLYQDPQGLAEHRN
IVCGWLQQKGFELDPQRVHFTSGGQHAAQLGLAAFCRSGDTVLVEHVSYP
GFLSLARQQQISIKPVEMDEEGLIPASLEAACRLYQPRIIYSTPTLQNPT
TVTMGEQRRQDILAICQQHQVLFVEDDVNGLLPTERPTPMVNIDSEQVIH
IGGLSKCLAPGLRLGYIQVPTRLQKRLNAALHNHSLMISPLLTGIACELI
ISGDADRILHQIRTDITQRQQLVAQHLGRFDIQHSPHSFHVWLTLPDYWL
LSDFVQAANQQGVVVKSGELFSPPGSTIPPAVRLAISAPFTHRKLEQGLL
ILSELLGKDPIHDFTL
>PBPRA1150 SO2628, putative cold shock-like protein CspD
MATGTVKWFNNAKGFGFICPEEGEGDIFAHYSTIQMDGYRTLKAGQQVNY
EIQTGPKGHHASEIVPVEGELTK
>PBPRA1238 SO2652, Predicted transcriptional regulator
MTFADRLKTLIGEESVSGFARRVDISEALIRKYLKGSEPSFTKANQIAIR
ANCSLEWLATGCGYLYRHAEVVDQDALIAAYTAVTGQTPNDEKVTELVKM
VSGYQFLRKHKKTDGYLDIEAMTTFLSIAKMERK
>PBPRA0960 SO3096, putative RNA polymerase sigma-70 factor
MHPMKKTNNNRDVDTKLTGKFMIKQFFRKKTPDATVSVDMNKQRRYEALV
RAWHRDLYRYAYWLCHDPHIAEDLVQETCLRAWRSLDSLQDDKAAKSWLI
TILRRENARRFERKQLDLVNIDDYAIADTHQQGTEMEMEQQMLHRQIMKL
APEYREPLVLQVMAGFNGDEIAEILGLNRNTVMTRLFRARNQLKDQIEKQ
SERRDHHNGRS
>PBPRA2125 SO3277, hypothetical transcriptional regulator, TetR family
MDAIAVKAQVSKQTVYSHFKTKDELFETCIKAKCSENQLDGRLVDDPRPI
REVLCDFAFSFQSMLLTKEAQHTYKTAISQRDSHPQLAKVYLSAGPKATA
DMLADYIQYFVDKGVLNVPIPVHEAAMQLLLMWHGRIVYWSYLGEVNGET
EEERRTYLNSCVDLFLAGYKVKP
>PBPRA0131 SO3684, hypothetical transcriptional regulator, TetR family
MVTEKKQQILDAALLLFVEQGIQATATAKIAKQANVATGTLFHHFSNKQE
LVVTLYRSIKDELSQSISQNTADNVGSSDNQADALKSTIESYWHQAIQWA
MSHPLKWQFLQQFANDPQFKISQQQDVMTSSMAFLVEAVEQGQQQGVLAC
LPIPLVLNYCHYHYLAVTTLFIEQPELSQQPSYQDGAFQMFWQGLVAKP
>PBPRA0547 SO3988, putative aerobic respiration control protein FexA
MQTPHILIVEDEHVTRNTLKSIFEAEGYTVFEANDGAEMHQMLSEHPVHL
VIMDINLPGKNGLLLARELREQGDMALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLTRAMNQGLPTEDKKLVERYEFNGWSLEINSRS
LVSPSGDQFKLPRSEFRALLHFCENPGKIQTRGDLLKKMTGRELKPHDRT
VDVTIRRIRKHFESVADTPEIVATIHGEGYRFCGDLNEE
>PBPRA0090 SO4326, hypothetical transcriptional regulator, TetR family
MPFKIMNEHSFIILFNIEYPMNNKKERILLATEKLLAEYGFHGLSMQMVA
KEAGVAAGTIYRYFEDKDDLLYQLHDHILGYVANKLTLNVSDEMPLKQRF
RTMWLNIWNMATRDDAPLINRGQFENLPRRNNHEQRLLEKKMFAQVDRLF
DEGKACGQFKDLDNEILSVLSLEPSSCLARKHMKGLVTVTDEAIDATIDA
CWDAITKH
>PBPRA3505 SO4716, conserved hypothetical protein
MRIRQASLAEAIIVLNQISEFDHPETEASLMQRLAGHASLILVAEHEGSL
VGVKIGYRFSDSTFYSWLGGVAPAGRRMGIAQALLDAQETWAIEQGYQEI
KVKSRNCFPSMLMLLLKNAYIIENIEKKGRVADYRIYFSKLLTNKKYSK
>PBPRA3600 SRLR, Putative transcriptional regulator, DeoR family
MLTNQNIMSKRNTQQRRHTIVSLVNEKGEVSVDQLATFFATSEVTIRKDL
TALETNGLLLRRYGGAVAMPSEIVSVDVEDNVSVRKLAIAKAAALRIRDH
NRIIIDSGSTTASLISLLGSKQGLIVMTNSLNVANALNELENEPTLLMTG
GTWDPHSEAFQGQVAELVLRSYDFDQLFIGADGIDIARGTTTFNELIGLS
RVMADVSREVVVMVESDKIGRKIPNMELPWSNISTLVTDDDLSAEAKEQI
EHQGVQVICASIE
>PBPRA0182 STM3504, conserved hypothetical protein
MATKRYQRMSNSINQMIASELNVRLEQVTAAVTLLDDGNTVPFISRYRKE
VTNGLDDTQLRNLESRLGYLREMDDRRKTILKAITEQGKLTPQLEAEINS
ADSKTRLEDLYLPYKQKRRTKGQIAIEAGLEPLADTLWQQPTNDPEATAA
QYINADKNIADTKAALDGARAILMERFAEDAALLHKIRRQLQTNAEFTSR
MVAGKEQEGAKFKDYFEHNERLKNVPSHRALAMFRGRNEGFLQLSLNADP
NQEEGVRGSYCEIIIADHYGVKLGTQPADAWRKQVISWAWRIKILMHMET
ELMSALREKAEDGAIQVFADNLSDLLMAAPAGPRTTLALDPGLRTGCKVA
VIDTTGKLVDIATIYPHQPQRQVAQSEAAVLALLNKHQVNLIAIGNGTAS
RETDAFVAKILKDNNLKIQSVMVSEAGASVYSASELAANEFPDLDVTIRG
AVSIGRRLQDPLAELVKIDPKAIGVGQYQHDVSQSMLAKRLDAVVEDCVN
GVGVDVNTASVALLTRVAGLTKTMAQNVVDYRDEHGRFESRTTLKKVARL
GPKAFEQCAGFLRIMNGKNPLDSSAVHPESYAVVKTIATNNSKAMDAIIG
NSEFLRSLNAADYADEKFGLPTVTDIISELDKPGRDPRPEFKTATFAEGV
NEVKDLIPGMILEGVITNVTNFGAFVDVGVHQDGLVHISALSDKFISDPR
EVVKAGDVVKVKVMEVDLQRKRIAMSMRMSDEPGQEKPARKPQQNQARST
ANHNAQSNNRGNSNSPKSNQGNNPAGGAMGGAFAAAFAKAKK
>PBPRA0159 STM3523, putative glycerol-3-phosphate repressor protein
MKQSKRHQEIIDIVKTQGYVSTDDLVERFNVSPQTIRRDLNELAAENKIR
RHHGGATIPSSSVNTSYNTRKVMQLAEKDRIAEAMAEHIPDGATLFIDIG
TTPEAVARALLNHNDLRIVTNNLNVASVLTGKDDFRVILAGGEVRNRDGG
IVGEATLDFISQFRLDFGIMGISGIDLDGSLLDFDYHEVRVKQAIIENSR
CVMLGADHTKFGRNAMVNLGDISQIDMLFTDEYPPEALAKLITEHEIHME
VVGQSNVPD
>PBPRA0112 STM3848, Putative transcriptional regulator, LysR family
MNRNGLYSNQNFHFGISLFQGCTVSFEKLARLDLNLLVCLHVLLEECSVT
HAAKRLNLSQSAVSKTLTRLRDQFNDPLFTRSAHGIKPTPRALALVPLLE
QLLRDIENLTAPAIFEPKSSDRHFKMALVESAYPLLLPQFLSEVFSKGPN
IILDTQSWEPNTFSKLQRGEIDFGVTGKDLNPKDAMLTLMPPQDIVWQEL
HRDTQRCIVRKDHPLLNQRWDQDNYLRQRHIQVRCDGSDRWLLDYKLADL
GLQRDIAIYVPDFNSAASLCTHTDLVFTAPSHFANYIAAQLDLVVVPLPF
ELPAMAYTLFWHQHQEKDLGHSWLRQIIISRCGDLSTV
>PBPRA3341 STM4368, putative Exoribonuclease R
MSKGTTDLPVDPFRDREASNYENPIPSRELLLEVIRGFSTPVSRDQLFTE
LKLEGDDHYEGLRRRLRAMERDGQLIFTRRQCYALPERLDLIKGHVIGHR
DGFGFVRPEGVGNKEDLMLPSHQMRGVIHGDYILAQVSGVDKRGRREGRV
VRILQESTKQIVGRFFIEDSMGYVVPDDSRISQDIVIPNDFRMGARMGNV
VVVEINQRATRQHNAVGKVVEVLGENMAAGMEIEIALRTHDIPNEWPSEV
TKQIQGLGEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVFCERKKSG
GWRLWVAIADVSHYVRPASALDNEATKRGNSVYFPSEVIPMLPEVLSNGL
CSLNPQVDRLCMVCEMTISDSGNLSGYKHYEAVMNSHARLTYTKVSKMLD
GDEELRERYAPLVPHLEELFGMYKVLKKSREERGAIEFETIETQFIFNAD
RKIDRIVPAERNEAHKIIEECMILANIASARFVEKAKEPALYRAHDVPGE
ERLQGFRDFLGELSLHLSGGLEPTPRDYAALATLIHDRPDKELIQTMLLR
SMKQALYQADNIGHFGLALKQYAHFTSPIRRYPDLTLHRAIKYLIAKNEG
KHEERWTPTGGYHYSFDDIDKIGEQCSMTERRADDATRDVADWLKCEYMQ
DHIGDEFEGVIANVTGFGFFVRLKELNIDGLVHISNLANDYYQYDAIGQR
LIGDSSGLVYRLGDTVQVKVAAINLNDRQIDFDIAGTNRKPRGEGKTAKK
KQQRMRKAEGMRSFGGNPAKKAFIVEDGKAKTEHRSKSKRVRSSVRQKLK
EGAVPLAEGDKAPAAGDSKSKKANDPKRKVKKSSKARKKQRAGKKERLEK
KAN
>PBPRA0721 STY0432, putative DNA-binding response regulator PhoB
MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELI
LMDWMLPGGSGINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGAD
DYITKPFSPKELMARLKAVMRRVSPTSLDDVIDVQGLKLDPVSHRVTTND
EPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVWGTNVYVEDRTVDVHIR
RLRKALEAGGHDKMVQTVRGAGYRFSTRL
>PBPRA2301 STY0675, putative transcriptional regulator CitB
MLIVEDEPNIAEFHSYYLKQTRRFRPIGIAGNLAEARKMVQILKPKLIFI
DNYLPDGKGIDLLKEVTSSKGAADVIFITAASDMDTVREVVRCGVFDYLL
KPISYDRLKDSLDRYLKYTSSLLASDNANQRHVDELFNFQSKNKQLEQFP
KGIDELTLEKVKIAFEESDAIFTAESLGKVIGTSKTTARRYLEFSTANGF
LDAIIQHGKVGRPERVYRKK
>PBPRA2470 STY1337, putative cys regulon transcriptional activator
MGGIMKLQQIRYIVEIVDHNLNVSSTAESLYTSQPGISKQVRLLEDELGV
QIFERSGKHLTKVTPAGVDIVRISRDILSRVESIKAVAGEHTHPEIGTLN
IATTHTQARYALPHVIKYFTARYPKVSLHMHQGTPSQIADAVGNGTTDFA
IATEALHLYQDIIMLPCYHWNRSIVVRADHPLAKKADITIHDLAAYSLVT
YVFGFTGRSELDSAFNRSGLTPRIVFTATDADVIKTYVRLGIGVGVIASM
AMDPEVDSDLVKIDASHIFEASTTNIGFKKGTFLRAYMYDFMERFAPHLT
RETVDQAVALKTNEDIEALFASMDLPVR
>PBPRA0749 STY2790, hypothetical transcriptional regulator
MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLR
KAGLVASVRGPGGGYRLGEDANDIAVGMVIAAVDESVDATKCHGKADCQG
GVRCLTHTLWHDLSSRISGFLNNITLGELMRDNNVQEISGRQDQVLSNSS
LRTSFGHKKTHDSTTIGVDVRS
>PBPRA0562 STY2836, putative ATP-dependent RNA helicase SrmB
MKDFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGT
GKTAAFLLPMIQHLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKN
THLKIFTITGGISYDDHAELLGKTQDIVVATPGRLMEYVESERFDCRAIE
CLILDEADRMLDMGFTKIVERINHECRWRRQSLLFSATLEGKGVREFSET
ILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQILKHQAERSIV
FVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNILI
ATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVE
AHDQAMIERVSRYMEEEVPERFINGLRPASKKAKTIKKKKVKIDKKLKVA
KQKKAAKKHKKASENKPEA
>PBPRA0499 STY3156, putative transcription regulator LacI family
MARIKDVALLAGVNRSTVSRIINGEGKFRADTKRKVEQAMADLNYRPSAI
ARSLATASSNMTGLLVTDYTGGFFGEMMNQVQTELDLHKKFLITAQGHHS
AEGERDAICRFHALRCDGYVLNSRYLSDDELRLLAKEPTPFVLLDRSVEG
LESRCITFDHSLAGQMAVDHLINQGHRKIACITGLLNRTNSRQRYQGYLN
ALSTADITVDLTLCAEGNYGRESGYLAAKKLYHSHPDLTALFFM
>PBPRA3139 STY3249, conserved hypothetical protein
MGLVINLPIEISVGNMLEQIEVERDLPVNNPDSLTQSVLNGGPVSEDRGF
VLHQPKGQFDSSICINDELSVTTSQDILPLLGTSEAPEKFIVALGYAGWS
AGQLEQELAENSWLTMEADAEVIFETPINERWDTAVARLGINPANLSIEK
GHA
>PBPRA3487 STY3849, conserved hypothetical protein
MFRLITPKTDDDFARYYDFRWRMLREAWRMPVGSERDAYDELSAHRMIVT
DNGETIAIGRLYMTPDNDGQIRFMAVHPNYRHQGMGAIVLMALESLARQD
GAKRLVCNAREDAIPFYLKNDFTSQGELSDERGPVRHQQMLKHLDPLTDV
VRHPEWCQELQELWQYQIPISDKMGIKISQYTGYRFEVSALINANLNPSE
FMFAGSIFTMATLAGWGFIWMLIKERKLEADIVLVDSHIRYVSPVKERPR
AVVSVETLSGDFDRLAAGRKGRVIVEVNVYSGETLASTFTGTYMLFPSQA
EADSRC
>PBPRA3418 STY4386, putative transcriptional regulator, MerR family
MYLIGQLAKLCGVSNDTLRFYEKNGLMKPAGRSNSGYRLYSEENLSRINF
IIRAKAIGLSLDEIRELLGIRLEASQHSCAEVKAITQTKLDEVDVKIAEL
TRIRVALKKLNDACCGHADDDASHCSILEALDERDCCSTLE
>PBPRA3342 STY4724, conserved hypothetical protein
MGERGVIVQLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMV
KIINKLGQLGYVDTVRGKNGGIRLGMPANRIILGDVVRATEPLQIVNCSE
DFCHITPACQLKGILASARSAFLAELDKHTLLSLIDNNPPLLVLLDRPVT
E
>PBPRA1648 T1507, hypothetical protein
MHCSSFSKSLVAGFRIGWVAAGQMALPIQKLQLMSTLSASAPIQLALAKY
LSTRNYENHLRQLRRKLEQRKFATWQLLRSYFLPNVSVNYSEGGYFLWVE
LPEHLDATELYQRALKDNISIAPGKMFSASKQFNHCFRLNSSFECSEPEE
RAIKRLAELIQNMLDE
>PBPRA2437 T1593, hypothetical phage shock protein C
MSKILYRDTKNGKLGGVCAGIAEYFGMEIWLVRILAVSAFLLGVGFFVTL
AYIAACLILDKMPEERTQQQTTYKEHNVKQKPWQAGQPAEQILRNVESEL
NGMEGNLRKMEAYVTSSAFNVDREFKNL
>PBPRA2421 T1689, putative transcriptional regulatory protein PhoP
MVIKIMRILIVEDDQILSHHLKSQLSELGHQVQCAGTAEEGLFFAQNYPN
DIAVVDIGLPDRDGISLIKDMRKKGLRLPVLILTARANWQDKVTGLEAGA
DDYLVKPFQKEEMVARLSALVRRSAGFVKPEMSAGDIRVDLLAKQVFVGE
TLLELTAFEYDLLEYLMRHSRQVVSKQRLLDVLYEDQEGDPNTIEVMISR
LRKKFMSAGQDNPISTIRGQGYIFELQAQ
>PBPRA1747 T1700, Putative ROK family protein
MYYGFDVGGTKIEFGAFNEKLERVATERVATPRDDYDKLVDTIVGIIQKA
DNDLGCEGLVGIGLPGMEDARDGSVLTSNIPAAKGRFLRKDLEAKLGRTV
TIDNDANCFALSEAWDESLQGEKSVLGLILGTGFGGGLVFDGHVFSGMNH
VAGELGHTRMPIDAWFSLGEKAPLFTCGCDNKGCIDNYLSGRGFEQLYAH
YYGENLKAIEIIKLHATGEAKAVEHVDRFMEMLAICLANIFTGLDPHVVV
LGGGLSNFELLYQELPKRIAKHLLSVAQVPKIVKAKHGDAGGVRGAAFLN
IKK
>PBPRA0611 T3205, putative transcription pausing L factor
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKHEAEIDVRVAID
RKTGQVATFRRWLAVDEVTQPTLEMTIEAAQYDDETIELGGFVEDEIESV
TFDRITTQTAKQVIVQKVREAEREQIVEQFMDNEGELITGIVKKVNRDAV
IIDLGNNAEAVIQRDDQLPRENFRSGDRIRGLLYAVRPEARGFQLFMTRS
KAEMLLELFRIEVPEIGEELIELMGAARDPGSRAKIAVKTNDKRIDPVGA
CVGMRGARVQAVSSELAGERIDIVLWDENAAQYVINAMAPAEVASIIVDE
DSHTMDIAVEKDNLAQAIGRSGQNIRLASQLTGWELNVMTVEDLQKKHKE
EAQVSIDTFTKYLDIDEDFATLLVQEGFTTLEEIAYVPVSELMDVEGLDE
DAINELRKCAKEALTTLALAQEESFEGVEPAADLLGLDGLERELAFRLAA
KGICTLEDLADQGTDDLLDLEEMGEAKAGELIMAARNICWFSDEA
>PBPRA2643 T3320, putative transcriptional activator RfaH
MKDWFLLYCKRSEQERAVINLDRQGVECYYPQVNVNKIVRGKRVEISEPL
FPSYIFVYFDPEHLSYTTVRSTRGVADFIRQGARPQMVQQELVYGLMMNE
NCEVHQAKLSSLPIPGECLQLKQGQFKGIEAIYQEADGEKRSFMLINLLG
KPVKVSVENEDIVKD
>PBPRA3586 T3631, Hypothetical GntR-famly transcriptional regulator
MEQQKSALNRNLSYKLAESIGRSILQGENAPGDILPGEIELGEMYGVSRT
AVREAIKMLAAKGMVHPRPRIGTRVLPKRNWNYLDQDLLAWLNFSEHSEL
VAEFQQVRMTLEPEAAALTALNASDADREELQHLMQEMHLLGDDFNQDKW
IEIDTRFHQLIYFASGNHFISPFGNLFKAVFENYFRIITRERLLKLDIHQ
QIVDGIIARDPDRARQATVDLLK
>PBPRA3535 T3643, putative transcriptional regulator AsnC
MTQPLRIDDLDRDILKALMHDARIPYAEMAKRFNVSPATVHVRVEKMRAS
EIITGTEVVVNPKLLGYDVCCFIGINLNAARDYHSAIEKLKELDEVVEAY
YTTGAYNIFVKLMCHSIEELQYVLIDKLQAIDEVQSTETLISLQNPISRN
VKP
>PBPRA1022 TOXR, transcription activator ToxR
MLKISTKYLIGQRFLFDPYDNSLIDQHESDELTRLGSNESRALGLLIEDP
GAIITRNRLHDHVWREQGFEVDDSSLTQAISTLRKALKDSTKSPEFIKTV
PKRGYQMIAPVEEYNSDTDSTETPVTEAADNTDSIHESSHHQNEPRHNTA
ATAHVNHSSGKATVTAAVPAQKNMVLGWVALALACLLPLLVNLSFPPKSA
AFTPLLTVDGITVSTTKIHPVLSNWKPMISECVTTYLESHKDKIRPVDII
VTGGQNNSIWLNYIHDTSVPNENITLRLLTSQEDNSKLCQ
>PBPRA0642 TRPR, putative trp operon repressor
MSTTPETADFTEWQQVVDLLRQAALEQKDDVMLKLLLTPDEREALLARVN
ILHELMNGQRSQRKISELLGVGVATITRGSNELKHQSDDTKEWLASLLKK
QQQ
>PBPRA2286 TTE2419, putative rpiR-family transcriptional regulatory protein
MTDQQTLLKAGKVIDTLGSLYDSLTPSAKRISDYVLAHSSEVTKLSIAEL
SQVANVGEATIIRFCRTLGFKGFQEFKMELAIELSSLNQQEKSILDTDVT
PQDDAELIGQKLHKTINNVLAETLNLLNFDTLEKVAKQIKSAKAVYFFGV
GSSGITAEDAKNKFMRIGFNVDALTNNHFMYMKASLLQKGDLAVGISHSG
SSKETTKALQLAKEAGADTVAITHNPRSAITEFSDFVLVNGNRQGKLQGD
SIGTKISQLFVLDLVYALLVNEDADSAKENKIKTTNALES
>PBPRA2434 TYRR, hypothetical transcriptional regulator TyrR
MRLQVFCEDRLGMTRELLDILASQEINLRGIEIDRIGIIYLNCPEIEFEQ
FSQLMSQIRQLDGVTDVRKIQFMPSEREHKELKALLQTLPDPFFSINLSG
KVDLINEAAEQLMSNVSTDVLGEYIQILLGFNYTRWVEKEGANKRSEMVV
IAGLDYLMDVMPVYVTNENEESVMVSAVILLKSLSEAKMPIAMREISGDN
GFEHLVGQSSRFKHLLVQAKKLALLDAPLLIQGETGTGKEMLARACHQRS
IRREQPFLVVNCVSMPDNAAETELFGFSGGANEVGKKGIFEQAAGGTVFL
YEIGEMSAHLQIKLLRFLQDGTFRRVGEEEEIKVDVRVICSTQKKLPDLI
AAGEFREDLYYRLNVLALVVPPLRERTADIVPLAELFLAQFAQELQQAKP
KISDKLSQYLSQYAWPGNIRQLRNVLFRAMTQVEGSEITIDDVQLPENET
TSIISDETLNGSLDEIMKRYESGILSNLYSSYPSTRKLAKRLGVSHTAVA
NKLREYGLSKR
>PBPRA0420 VC2489, putative transcriptional regulator
MAGKAGRPTGVSDARQRLIHQARLLFVALPYSKVSTRMIATRADVNVALI
RYYFGNKAGLFETMLRETVEPIQSQFAKVLNKGDIESIGELMRTYYRIMA
PNPDLPKLNSRAMMMEPGALQRQTIENMFSNIAYSATELMFKPMKLKGQL
REGINPDKARMTFISMMVFPFVAPPAMLELQGIKLDEAYLMELADHNVRV
LTQGILAETEDSSA
>PBPRA0061 VP0027, Putative transcriptional regulator, LysR family
MELEEVYRRDLNLLVALKVLLDECSVSRAAIRLNLSQSAMSRVLGRLRDL
LADPLFTRQGQHLIPTQRALEINESLDDPLEALRILLTPSDFRPELCDQR
FVIATTDYAMQTILPFALPRIYEEAPNISLKFEPLQHDHLLTQLTTDGCD
MAICRPTSIDTSLCRDHLGLVSVFCLLSRNHPMADKDLTLDDYLSFPHAM
IAISDGVKALIDEALRGYPERKMALRASHLEAALAIVDKMPLIITVPADL
AYLVADKYDVVVKSLPFEFEPFDYSLLWHPRCEHSASQVWLRNLIKEECG
RLIGQRIRDMGLA
>PBPRA2353 VP0475, putative transcriptional regulator, LysR family
MDNSVLLEGIETLLVLAKEGTMSKTGSRLYISQSAVSKRIARLEKRLGKK
LIEPAGRYIKLTADAITLIDNVGPSYKEIKGLIFDQQPYQDHTPIYLACS
ETLVAGYLGSMMGAYIQHDPYISITTHHTPVIIEKVQSGDATIGFCAGHL
TPQHGLSTRHLFNEPFSVISHQPLRQQPLQLLVNDFNNPSNANQASLLQK
AGIIPLMEMDSYTAAAQLALGGVAPALVPVSIIKTLKIEPIYCHHFAFLD
ELTRPVHLCYRQKSYQSERVSKLIETIADSVPKAI
>PBPRA2167 VP1985, conserved hypothetical protein
MQHVLPKGLKHLHDYGLNTRINPLTAVSGHTDKSLIFIKRTISQLLPFSF
YSNFLVNYWAVLYHSHHGFIILHTLSQLKSGELAGTQRLKLSENLTSFPL
EILSLADSLEILDLSNNQLTSLPQELVQLKKLKIIFASNNQFEVLPEVLG
QLPHLEMVGFKANKIHSVPEHSLPAQLRWLILTDNQIKTLPNSLGERPRL
QKLALAGNGLTHLPQSMSQLDNLELVRISANQLTECPEQLLSLPKLAWFA
FAGNPFSQTKSAIQSVPVLPSSSFSLQDVLGQGASGVISKATWNNKYQTD
FPEDIAVKVFKGEVTSDGYPDDELQACLKVGNHPNVVQSLAQVNEDGYLA
LIMNLIPSHFRNLGLPPCFNSCTRDTFSPDFTLSVEHIDKIVKQMEEVFV
HLHSNQVCHGDLYAHNTLYDEEANIIFGDFGAASMYHMLTEAQQACIKQI
EHRALCHFIDDLLSVCAEGNRDEKTFDLLKQKLSH
>PBPRA3447 VP2933, hypothetical protein
MTKLRFHHLEPLRFPLVNRLYKSYYPAGKAKKDEIIWVGDNEKGIICVVR
FKQFENIQLLTGMLVHPEFREQGLAKNLLAATKTQINCKPCYCFAFRELI
PLYSNANFHLVDKIELPEVLSNRLIRYISSGKDLVAMRYEA
>PBPRA1896 VPA0331, hypothetical transcription regulator protein
MQRKKPDYYSLKLKKSINXLGILHSLTNKIKKGSQHLRIGATPILATSLL
TPTIADVCQDADLSIELATDNRDGLCQSLIQNQLDLAICFGNNTPPAITS
EHLLSDNMILVCHPNDATTLKSLPSNTVSLSKLLLNSVTPSPKIIGLDSR
DPLGYALNHAIHQIDPTYQPQIVVRTYSAAAELVLQGAGIAIVDPWTATL
YEGKLKQFKLEADISFSVSILFADHSPLNITAQQFVSQLRSNIIKPI
>PBPRA2823 VPA0662, hypothetical SoxR, transcriptional regulators
MSKRESSQNNRVQQPYISCNVQEAGMNISNVATKTGLTTKTIRFYEGKGI
ITVPERSSNGYRLYGEKHVAELNLIRRSRLVGFSLEECGELLALSRDPKR
KSADVKLKAQEKLIEIDHKIEELLKMKKTLETLTKQCPGNEGAACPIIEG
LSQD
>PBPRA1753 VPA0938, hypothetical AraC-family transcriptionalregulatory protein
MSWPEYYEISDQCRTTTIDQGQLMALEKHQIVQCGVNYARQSFTVYRRNP
NMHMLLFTCCGEGWLETPVRKWTLESGSVIHVPPGSANGFGITQKEKDAD
NETLDAENENTWDIAWVMLSDNGEWAKTMPNEVTYSKTQCADMLRKTIDC
LHQSMSLPYPVGNQLGDNLVEQIRLLVTNRLPTSMPISLQRLEKVFDRAK
EQLHRQWSVAELAALHPCSEPHFHRLCQQYYCHSPIAHLTRLRMEYAARL
LSATEWPIQHISESSGYPNPANFSTRFKKWSSLTPREFRQRFKY
>PBPRA0657 VPA1044, hypothetical serine/threonine protein kinase
MFLHISITLFSLTLGANTKYNKNTIAQESFEYTILSQLLLEKTLMEKQPH
KNNNQPQHSKNHEISNQEDDNNKTIINTSKASSLKSTKGNDNGSGDINSD
LLNTVIKGRYRIESRIGHGGMCDVYRATDLLLEAAGASSPFVAIKALQNE
FFNQPEAAKVLINEAQTTQKLSHPNIIRVYDFGIDKKICYLVMEYLDGET
LDVVIQRSRPHGLPYKRAIPLLDQMLSALKYAHQNGIVHADLKPSNIMLT
RDGEIKIFDFGVAKKLGENNDQYAAVQEETLSELGGYTPNYASINLLEGN
DPEIKDDIFAFSCISYELCSSKHPFNRKPADVAQKEKIQPIKPKHLNSSK
WRIIQQGLSLSAKERIGDAALISSQLHRQYKSTAIMITAILSLNSVVGYV
LYQQKEAILELTTDNRNLHQHIEERAKLANLSAREIIKQLPELSINAPII
ASGLLKSKQRDVIALYEHNIDLIFNTRENYYPNYYAIEAELAEVSKLYPD
SHAINVLSTDISTSWQSTIDILSNQLNTALEKAHYQISADSNIYELLTNL
KNLRHDIQFKPTSLAEKTYATQYKKAANQQDTETLATLIQVGETFFSTTD
EHIAQLQHTKILHKATLQLEQFKAAREGDKPAPFPYESAELLYANKFDKF
NHQLKRVNSESKLDKLLKQVDEIAKELPADFSSLITLRLASANQYLDFSE
KWQKKRKQSAARNAMKKATHQFNLVEKAHSRS
>PBPRA1963 VPA1289, putative Cold shock-like protein
MSKTTGIVKWFNDEKGFGFITQDNGGADVFVHFRAITGDGFKSLAEGQKV
SFDVEQGQKGPQAANVEIA
>PBPRA1805 VPA1393, conserved hypothetical protein
MKLRKWQSACVKQVLQKYNNYLKHFMCLATPAAGKTTMAAEVALQLVKQD
KIDFVICFCPTKEVEQGIRRTFERHLSRSFNGSIGALGGVYTYQSLLTLT
PEFWQILREYRVLVIFDELHHCAGDRLPNANAWGAQILINICDYATYTLG
LSGTPWRSDRLPITLGRYLDDNQIECDFTYGLKEAVADAVCRQPRIVLID
NDRITVTSRKEGAKTFGSLTDAFSGSDLAYKSIISEQETMKHILSQGVSK
LSELREQNPDAGGLVVASSIEHAIELAQMLQSEFGQSTVMVSHQDSMPSE
IIDSYRKQTTEWIVSVGMVSEGTDIPRLQVCCYLSHVRTEMYYRQVLGRI
LRVNSSVNQEAWFYTFSEANLVKYANRIQNDLPDTSVIYELENEAASYSH
GGQTGQSQPNGISELSLRFDGRTNTNLNNNVNSNELYKAPDYQLIGQYRQ
KVISLFKV
>PBPRA1786 VV0135, hypothetical transcriptional regulator
MYRISELAERVGVSRTTLLYYEKLGLIKGKRLSNGYRSYSELDVQRLLLI
QQLQGGGLTLKECQACIEAKVDRQLLLERLEQLDVEIAQKQKSRQLLAAL
LGESQLTEWHELLDEIAPDAHLDWLIKQGFSEKCALRLKWLSKDMNQHTS
YMADFNKVFAQLDRWGPGSEEDTLQALAKVPHKPQEILEVGCGPGIATMV
LTNHSSANITAVDNDEQSLTHLMALATEQGIADRISTVCVSMMDIPFEAK
TFDLIWSEGSAYIMGVANALKQWRPLLVNDGILVLSDLVWSTKNPSEDTF
DFWRKEYPDMVTAQHRIEQAEAAGFEVIDSFALSEQAWASYYQPLQTRIN
ELKSGMRDSRALTDLEREYDIYRRRLDEFDYQMFILKKA
>PBPRA3035 VV0691, putative response regulator
MIKAIVIDDELYAREELIDLLLDSGEIDVIDSCNNAIEGLKKINTLKPDV
IFLDIQMPQITGIEMLSMLDPDTMPKVVFVTAYDEYALKAFEDNAFDYLL
KPVETCRLDKTIKRLKREYEAKDYSPLIADMLELIPCSGHNRILLLRPED
IEVAYSDLSGVHILSTETKASTQLTLKILEEKTPLIRCHRQYLVHPQAIR
EIKLLDNGLAEITTQYGHQVPVSRRYLKELKDRFGLS
>PBPRA3071 VV11588, putative RNA polymerase sigma-38 factor
MLTRHLGGAMSRSSTAKKTDTLNLDQDIDIEAIADAAAASTKAESEESSN
DVDVSKYGTTQKALDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEIAR
KRMIESNLRLVVKISRRYSNRGLALLDLVEEGNLGLIRAVEKFDPERGFR
FSTYATWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAQKLDH
EPTAEDIALKLEKPVDDVNRMLRLNERVSSVDNPIGGDSEKALLDIIPDE
KGGSPESSTQDDDIKNSIVHWLQELNPKQREVLARRFGLLGYEASTLEDV
GREIGLTRERVRQIQVEGLRRLRDMLTHQGLNIESLFNQGAQ
>PBPRA2064 VV13183, Conserved hypothetical protein
MTFQRHEQPQDIIQKLNTIGSAQRERLAFIDFALYFLGEVTRKDLIDRFA
VGHAATTRDLALYKEILPDNLKLDMRSKKYYKQDAFSPMFTLDLEKTLAT
VSLGYGDGFSGHQAFPISCESPQLLTLPKTPIMAVLCEGIYRNKLIEVEY
ISTSSGKSRRIIAPHSLVDSGNRWHVRSFDRKNDRFMDVVCNRVVSANIL
IDAPHNHELITEDRQWQKFIDLELTPHPEQQNPEAIELDYEMVDGKRVIE
TRAALAGYLLRKWEVDCSKDRSLHKTVGYQLALGNHQALYQVNSATLAPG
YTA
>PBPRA1207 VV1446, hypothetical protein
MSAFKEDYLTYLSHFGCYEKRSMFGGTGVFIHGAMYAILTDTTIFIRGGG
ELDDKLLQLGCLKFKHIKKSTTATVNYYDITKLFLRDKNKCHSLINESIS
FSQKEKAFKCSEESRRLRDLPNMRLTLERMVKKAGIPDVNSFLLLGAAEV
FRKVRKTHGTDIDLKLLWMFAGAINGCHWSLLNDDHKEKLLNAIE
>PBPRA1859 VV1691, Putative NAD-dependent protein deacetylase
MLFPYRNIVILTGAGISAESGIRTFRDQDGLWENHHIEDVATPEGYRRDP
DLVQNFYNQRRQQLESGTVAPNAAHLALSKLEAELDGTVTIITQNIDNLH
EMAGSKNVIHMHGELLKAQCSGTGQSIHWQGDIKLDDHCHCCQIPSPLRP
NVVWFGEMPIGMERIHDALLTADLFISIGTSGAVYPAAGFVHEAAMHGAH
TIELNLEPSEVQSEFAEKRYGPASKVVPEFIDEILSAK
>PBPRA1950 VV1908, hypothetical acetyltransferase
MVLIQEVESDSQYLITLYQWFESEWDDVEPLASTKDGKVIPSPIIALKDG
ELVGGLVFTRFLSPMTNEQAVWINAVFIKPENRKQGISSQLINRAEKLVE
SIGESELLVFAQIPELYSKLNWQVIETHDDHFVLKSALVK
>PBPRA2008 VV2061, putative transcriptional regulator, LysR family
MDLIKLSRISMKHLITLHVMLDTLSVTGSAERLCVSPSSVSKTLSQLRDS
LNDELFYRHGNKLVATPLARRLGPSVHQMINDMNQIMTQEAFDPSRYEGG
FSLAMRESTFELIAAKLSTHVLNLAPNIRLDIWSKDSLGFDALAKGKLDF
VILPHDRSQPPSTQNNLIWETLIDDDMVCLMNPSHPLSDQTLSIDNYLSY
GHIGIMDTDLNVPFFEMQLAQQHKKRKITVTVSDFGSAALMCHHSDLLFT
CSRRWANIAFQAKGLINKPLPFNYGDVAYSLVWHQPSMNDPAHRWMYEQI
KACCKDIDM
>PBPRA2343 VV2111, conserved hypothetical protein
MRISHKRKVQLKLQKRIKATVAVAKPTAEKVVVKKAPTAETVKAAAPAPK
VVEEQKPVEATAPAAAQVSLTPKQQQVLDIVVSNPEGLNPKGIGLQAGQE
DAKAASWATGALKKLAEEGLVERIQLAGNKVLYKAA
>PBPRA2608 VV2121, putative fatty acid metabolism regulatorprotein
MVIKADSPATFAEKYIIESIWNGHFPQGSILPAERELSELIGVTRTTLRE
VLQRLARDGWLTIQHGKPTRVNNYMETSGLSILDTLITLDGQDVQSVLED
LLAARTDISSVFMRYAVKGNGKESSELIEHVIQSCEELLNANSFAEFVEN
SDDKLPLMQQVKKIVDKYGKTDPELCEAICRARAFNYYDYRLFQGLAGKS
GNKLYVLTINGLRKIYTRVGGYYFMSPEACQLALDFYREMQSYCDNNQPD
HVADRLKKYGRESGAIWYSNRIEIAHYLYEEEQ
>PBPRA1903 VV21522, conserved hypothetical protein
MQYTEQDRNILHDTWMSYKAKMRITQIEMAKRLGVSQLVFSDILRGKLPL
EHHFVTQFCGFIDVDPALTLPSLRNKVGASMPNSVTVKNTYILDGDIKKV
YYTGNQLVVEYEHNVSETAA
>PBPRA2361 VV21654, Hypothetical transcriptional regulator, LysR family
MPQIDDLVLFTQVIEHASFSKVAELNKITKSVVSKRISKLENQLGVQLIY
RTTRKLTLTEPGSILYHRSKDINQVAQSAFDAITGYNEALSGNIRVSVPT
ISGELLLAEALSDFCQKHPGLTVEMSMDNHFVDLVAQNYDLVIRTGYLED
SSLIARHIFNSRWVICASADYLEKHGVPETPKALHHHNCLGYTQQSTGPF
DWLFVRNNTETYTLKVDGNFSSDNAVALRKATLANNGIAYLPTCLVFDDL
KSGKLIEVLAEHSGKVVGIYAVYPYTKKPSKRIQALIEHIRERYITMKER
F
>PBPRA2222 VV21654, putative transcriptional regulator, LysR family
MAFNIALLIDILPHTLNFVAKSALIMRNTDNFLIFYHLIEQGSFSKAADQ
VGLTKSVVSKRITRLEQDLGVQLVYRTTRKLTLTEAGEVFFGHAREVYYS
VQNAEEAMSGLGESLTGTIRLTVPTISGELLLPKAISEFSAKYPEIHIDM
DLDNRFVDIVKEGFDLAIRTGELPDSSFIARRLVDAHWVICGAPEYFARN
GVPKIASELVNHNCLAYSYQETGAKEWLFKGENKPYTIKVNGNFTTNNAS
ALRRAALFGQGLVYVPKVLVAEDLKAGSLIEVLQEQVAKCLGIYAMYPYT
RHQPIKVKLFIEHLYQCYQKHEDKF
>PBPRA2543 VV2241, Conserved hypothetical protein
MNKWPIRWDLLFRYRMIEIIALWEGRLTTNHLIQSFGIGRQQASKDINSY
LTDIAPGNLVYDKSLKGYKPSDSFVPQLTSGHADEYLHILSRSEDMTVTF
NELDMGFEHTAMVRPVTRNIAPEILRSLVQAIREKKRVDICYTPLKDGEK
VDRIISPHTLVCTPLRWHVRGYCEHAKDYRDFVLSRIHGIPDLNDHAVHG
KQGDKLWNAAVAVELSPDSRFSEKQKSVIEKDFAMVDGVLSISTNASLIR
YVLDSYNIDIHVQKSNPQVQQIVVRNMDELLRYL
>PBPRA3393 VV2418, putative transcriptional regulator, LysR family
MQRCKNGMKLDDLRALIAIAQHGSFRAAANALDIPPATLSRRLQRLEDTL
GSQLVIRDSRNVALTPLGQNYFERCQPLLDELQATTSELMDTSSSNPRGA
LRISAPVGLLTYQLMPLFNQFLALYPEVTLSLNHLSNQHHDYSQEQYDVV
FRVGQQPNSSFAAAKIGESQRTLVASPEYLAQYGIPHHPDELNHHSRLAT
VPEFEWALTCKTDVAHPETIWINSPVRMAIADLNSVKQAAISGLGIACLP
NYVVADALEKSTLTTMMDDWYSPPRPIYMLYQRLGYVPNHITCFIDFMRN
ALTGT
>PBPRA3111 VV2648, hypothetical LysR-like regular protein
MESKSKDINWRGVDLNLLVAFSALMETRSVTKAAAKLSIGQSAMSHNLSR
LRLLLNDPLFERQGHQMIATQRAIELSSTIENILNLVMTQVLRPDDFDSQ
HYQGTFRIGLTDYAELLFAPALFDAISRLAPKCQLSFCNVDRHNYINSFN
DKNLDVVIGSMTDLPKELESQYLYTEDHVCLFDQSATGLTVPVSLARYII
TPQALVSPDGKLASPIDNQLQEQGFKRHIALGSSNFLTIRHLLKDRNLLC
VVSRLMAKIDIFNDNLTQCKPPVDIPDFHINMLWLRRNSTHQRMEWLCQI
VSETVSERVASLREKSEAR
>PBPRA1305 VVA0790, hypothetical helix-turn-helix XRE-family like proteins.
MQRFITDRKALAQRIRVARECRELTQVRMAKYLGLARQTYLDIETGKTEP
KAGTLLAIAQILKTDYRFLLTGEKYNGGIPLTVDDVNQYFARNCGDIHLQ
VTLN
>PBPRA1909 VVA1052, putative Cold shock-like protein
MSNTTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIASEGFKTLAEGQKV
SFEVEQGQKGLQAANVVAI
>PBPRA1962 VVA1052, Putative cold shock-like protein cspG
MPITVDVEKSGDNMSKATGTVKWFNEEKGFGFITQDNGGADVFVHFRAIT
GDGFKTLAEGQKVSYETEQGPKGLQAANVEAI
>PBPRA1008 VVA1156, putative transcriptional regulator, MarR family
MKDIEQLNHTIIEFYEKLSSWEQSVVRGKGFSLPQIHIVEILGAHGAMRM
KELADKIGVTTGTLTVQVDKMVQAELIQRRPHESDRRSILVDLTEQGVEM
YQEHDHLHLSLTQDITAKLDDTERKNLLMYLTKMNQEF
>PBPRA1482 VVA1240, putative transcriptional regulator, AsnC family
MDKFDQAIIAELRKNARQSVSAIAEAVNLSRPAVTERIKKLEQTGTIRGY
QVLLSESQKEGVSAYFEIRHQCARCADVVEIFKTLPEVQSCHGVSGDMDL
LVFVKADSIQRLHQIRETLDAHADIVKIKTHVVMSEWL
>PBPRA0210 WAVC, conserved hypothetical protein
MEELCFDNQRIWFDPNLLQEDPKACFDASFWQQQGKVIGSAQGRGTTWFV
QGETLPMALRHYRRGGLFGKLIEDAYVFTGWEKTRCAEEVALLSTLAVGG
VNVPRPVAARATRHGLVYRADLLVEKIDSAKDLVDLLQQAMLPDHVWYAI
GRTVRKMHDLQVCHTDLNAHNILVDSRELVWLIDFDKCYTQEGEAWKAKN
LSRLHRSFVKEQGKRNIHFSATSWQVLCQGYELPDN
>PBPRA3612 XAC3906, Putative ParB family protein
MNMSKRGLGKGLDALLATSSVAQAKQQSAEKAQSLSADGTLRELPIHLLQ
PGKYQPRKDMSDEALAELSDSIRAQGIIQPIVVRRLASQQYEIIAGERRW
RAARQAGLQNIPCIIKDVNDRAVIAIALIENIQREDLNSIEEAQAFERLQ
SEFSLTHQQIAEAVGKSRAAVSNLLRLNQLEAPVKRMLERRQLDMGHARA
LLSLDADMQLEAAETVVTKMLNVRDTEKLVKKLLNPVSERVRPVENLEIK
ALENSLSERLGTQVAINHQKNGKGKIVISFDEAHKFKQLIAIFGQEL
>PBPRA3395 XAC4180, putative transcriptional regulator, LuxR family
MLNSTLFFDFFSNTRIEHDYYIYRQALPDPALILSVNELIWFYSSDSVIK
NNSEKVAMDAQYTIVIADDHPLFRNALFQSVHMAISGANLLEAESLDTLL
SLLEKENDVDLLLLDLKMPGANGMSGLIQLRNQYPDLPIVVISASEEITV
VKQVRSHGAFGFIPKSSDMRALISALHQVLEGEPFFPEGLGDEDDEINDL
AQKIASLTPQQYKVLCMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLG
VKSRTQAVILLQQMDLTQ
>PBPRA1807 XCC1604, putative transcriptional regulator
MYTESPLPIRLKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGRHMP
DIATLRRIADELGVPLSYFFCDSDNSAKLACLIEKLSEEDKKELIRKLEG
G
>PBPRA0232 Y0067, putative transcriptional regulator CpxR
MAKILLVDDDIELTSLLTDILEMEGFDIVEANNGIEGLEKIDSSIDLILL
DVMMPKMNGTQMLRKLRESFATPSIDANGKR
>PBPRA3243 Y0141, putative BolA/YrbA family protein, transcriptional regulator
MEIAEIKQILETALTLDEVIVKGEGSHYEVIVVGAMFDGMSRVKKQQAVY
APLTEHIATNAIHALSIKTYTPAEWARDKKLMSL
>PBPRA3540 Y0361, putative transcription termination factor
MHINCYSVHFLTSPLVNSILNQNRTPILTDKKPTTMNLTELKSQPIPKLV
ALSESLGLENLARLRKQDIIFSILKQHAKGGEDIFGDGVLEILQDGFGFL
RSSDSSYLAGPDDIYVSPSQIRRFNLRTGDTVAGKIRPPKDGERYFALLK
VNAVNYDKPDNARNKILFENLTPLHANDRMRMERGNGSTEDITARVLDLA
SPIGKGQRGLIVAPPKAGKTILLQNIAQSIAHNHPECVLMVLLIDERPEE
VTEMQRLVKGEVIASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLD
SITRLARAYNTVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTI
IATALVDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDFNRSGT
RREELLAKPDELQKMWILRKIVHPMGETDSMEFLIDKLSMTKTNNEFFDA
MRRQK
>PBPRA3082 Y0811, putative GTP pyrophosphokinase
MVAVRGAHLKENDTFELSSWVDSLQQDAKASKRLKKTYQRCIEITTKEES
TPLLLWRGREMVEILVTLSMDADTLVAALVVPLVEAGIYQHEQVKEDYNT
TIMQLVKGVEQMAAIGQLNATTEGAEQSAQVDNIRRMLLSMVDDFRCVVI
KLAERICNLREVKDEPDEVRRSAARECANIYAPLANRLGIGQLKWEIEDY
AFRYQHPDVYKQIAKQLSERRIDREYYIDHFVSDLDESMKASHIKAEVHG
RPKHIYSIWRKMQKKSLEFDELFDVRAVRIIADQLQDCYAALGVVHTKYR
HLPKEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKQMHEESELGV
AAHWKYKEGSSSGAAKSSYDEKINWLRKLLVWQEEMSDSGEMLDELRSQV
FDDRVYAFTPKGDVVDLPLNATPLDFAYHIHSEVGHRCIGAKVEGRIVPF
TYHLQMGEQVEIITQKEANPSRDWLNPNLGFVTSGRARAKVHAWFRRQAH
DKNMVAGREILELELNKIGAKLKDAEVYALKRFNAKNVDELFVGIGSGDL
RINQVVNHISMIINKPTAEEEDQQLVDKLTEASTKISTSAKKPQRDAVVV
EGVDNLMTHLARCCQPIPGDEIVGFVTQGRGISVHRNDCEQLAELRHHVP
ERIIHTVWGGGFVGNYNITVRVTASERNGLIKELTNTLANEKAKVAGMKS
RIDYKKQMSIMDFDLELTDLDVLSKVLKRIEQVKDVAEAKRLY
>PBPRA0970 Y1038, putative transcriptional regulator, AsnC family
MNNLDNVDKTLLRLLQQNGTMALADLAEAVNLTTTPCWKRLKRLEESGIL
RKRVALLDPIKLGLSFTAFVQIKTSNHSKEWYHCFVETVSEFPEVMEFYR
MAGEYDYMMKVQVADMAAFDNFYKKLVNSIEGLTNVTSTFAMEPLKYTTA
LPL
>PBPRA3095 Y1290, putative rpoE protein homolog
MSEQQTDQVLIERVQRGDKQAFNLLVIKYQNKVCNLVARYVSNSGDVPDV
AQEAFIKAYRALPTFRGESAFYTWLYRIAVNTAKNYLVAQGRRPPASDVD
AEDAEYYETGGALKEISNPENQMLSEELKRVVFGTIESLPEDLKTAISLR
ELDGLSYEDIAEIMDCPVGTVRSRIFRAREAVEKRIRPLMQR
>PBPRA2120 Y1949, Hypothetical transcriptional regulator, LysR family
MFSYNDLQVIDVVARRGSFSAAAEELHKVPSAISYTVRLIEERLAVELFV
RLHRQVKLTPAGEYFVEEARKLIKQMELMRLQTQRVANGWSQSVSVALDT
VVRESRVNTLVRDFYCAFPDVELHLSMEVFNGVWDALADGRADLAIGATA
AVPVGGAFDYRDMGTLTWKFVVSKDHPLANVEHKLTAEELVQYPAICLED
TARTLPKRVTWIMDNQRRIMVPNWYSALQCLKAGLGISVVPTHMAIPRIE
SGELVEKQLVNKPAVSPCCLAWNTECVNPALEWLLAYLGDSEQLHREWMR
>PBPRA2439 Y1980, putative phage shock protein A
MGIFSRFADIVNANVNSLLDKAEDPQKLIRLIIQEMEDTLVEVRTSSARA
LADKKELQRRINSIEAQSNDWQQKASLALQKGREDLARAALIEKQKISDV
ALTLNEEFKLVEETIDKLSSEVAELERKLQETRARQQSLVLRHKAAGNRR
DVRRQLDTGKVDEALSKFEQYERRIDEMEAEADSYNLGRGKNLEDEFANL
QAQDSIEQELARMKANIKDKE
>PBPRA2146 Y2113, putative transcriptional regulator
MATIKDVAKLAGVSTATVSRVINNTTYVEPVTQERVQKAMKELNYHRNAR
AAALASRSNNTLGLLTGNLADPFFALIAKSVEAVARSQNCQLVVVSGGHN
AQREKEGLDFLISQGCEAMVVHSKMLDDATLLRYSAQLPAMVLINRTIPQ
LAHRAVWVDNRAGATKSVDHLIASGHRKIACVTSDLPIEDRTERLEGYRQ
AMVSANLTIQPNWIINQPFSEEGGEAAGKLLIKQCPEVTAVVTFNDVMAA
GLMASLYEQGYKIPSDYSIIGFDDVLLARYLYPRLSTMHNPIDLMSTHAA
TLALQLREQSEVLPSTNRFDANLVCRQSVSIPRQA
>PBPRA2238 Y2443, putative transcriptional regulator, LuxR family
MINVFLVDDHELVRTGIRRLLEDVRGIKVLGEADSGEEAVKWCRAQHADI
VLMDMNMPGIGGLEATRKILRFNPDIKIIVLTIHTENPFPTKVMQAGAAG
YLTKGAGPDEMVNAIRMVNSGQRYISPEIAQQMALSQFAPDSENPFKDLS
ERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLDIGGDVELT
HLAIRHGMLDTETL
>PBPRA2110 Y2733, hypothetical protein
MDKPVLKDALKIFDCFESVKSRSMFGGFGIFAGETMFALVVNDKLHLRAN
ADNEEEFKKSGLEPYVYKKRGFPVVTKHYAIPDEWWNDTTKIILQAQGSL
TAAEKDKEAKSNTGPNRIKDLPNLRLANERMLKKAGICTIDDLFDAGALR
AYRALQDNHQNSLSIELLWALEGAISGQHWSVITEQRRTELLSALS
>PBPRA0184 Y3916, putative transcriptional regulator OmpR
MQENYKILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFH
LMVLDLMLPGEDGLSICRRLRNANNKLPILMLTAKGDEVDRIVGLEVGAD
DYLPKPFNPRELLARIRAVLRRQTIEAPGAPSVNSKIVEFGEFRLNLGTR
EMFRGEAPMPLTSGEFAVLKALVTNAREPMSRDKLMNMARGREYSAMERS
IDVQISRLRRMVEEDPSRPRYIQTVWGLGYVFVPDGNEK
>PBPRA0239 Y4095, conserved hypothetical protein
MKTIDKILYHIKREGPVTAKVLSQEFSLTTMGVRQHLQGLEDEGLVDFHD
VKVKVGRPTRHWSLTPQGHSRFTDRHGDLIIQMLDSVEDIFGSVGLNQII
ERRENQTFEQYQYAMANSSTLKEKLEILTTLREHEGYMAELQQDGDAFIL
LENHCPICHAAKRCPSLCKSELSVFRRLLGNNCSIERHEHIIAGERRCAY
RIHNSE
>PBPRA3001 YEIE, hypothetical transcriptional regulator
MNIALKQLKVFVTVAQERTITAAADKLFLSKPAVSMALSELEKQLDHKLF
DRNNNRLIINEQGKRLLPLADELLSRSHSIENLFDQTGPVTGNLKIGSSD
TVGNQITPFLLRDFRESSQHYNQSLFISNTAQICHKLSEFELDIGLVEGK
VQQNDLVTEPWLDDEMVVVCHPSHPLTLINNLRLVDLENSEWVLREPGSG
TREFFLNRISPRLEKWHQAFELNTTEAIINCVAANLGITCLSKLAIQHAV
NDNRLVILELPLDMRRQYWLLFHKEKYQSPLLKLFLNFCQKWDLKR
>PBPRA0427 YGAE, putative LuxZ
MSSPTLTNKIMEVIRQDILLGELSPGQKLVVADLKARYNVGASPIREALV
QLSWKKYVKFAPQKGCWVAPISVDELEDLFETNLILSRVLLERAIINGDE
AWELNILTTYHKLSKINPAASDVDFTEWEDRHSEFHLALLAGSQSPVMLE
LYREVYEQIERYRHVWVSRNRHYEERYHDNGEHDAMMKAVLGRDTQRALD
LLNNHFKRAVEIIKAYI
>PBPRA1995 YGEV, putative transcriptional regulator
MLNTTHQSELMQLQPTILRFTQMLSAVLQLDAEVVDANLVRIAGTGPYSK
FFGKKLNTSSRIFRYILETHQEKVVVKSRTDPLCDGCTNKTNCRETAFLG
VPIMIEGRCIGVISLVAFTVESREKIKENAQLFSDYIRHISELFVSKVLD
MNDSEHGLDKVFTSLIENMDQGVLVLDEHSRVQYGNTPALTNLNIEKEEL
VRVEVNIQPLSIHNNDLKGHQQHIISLGKRQELVVGQFHDIQGHQLFIMA
FYQPNTSFSNNEAPKAQFTGVIGECKKMQQLKVLISRIASSPSSVLINGD
SGTGKEVVAHAVHNMSDRVDKPFIAINCAAIPDQLLESELFGYVKGAFTG
ASSKGKTGLIQAANQGTLFLDEIGDMSMTLQAKLLRVLEEREVMPIGSNT
AVPVNIRIISATNRNFSEMIATNKFREDLYYRLNVIPIHLPTLKERGKDI
ELLIHFFLDIHTRKIGVSYPGITPAVMLRLNAYHWPGNVRELSNLIEYLV
NVVPEGDVIDIDLLPPYFEGTVLEQKNDHQIIDESIMSLEEMEKIRIEEA
ISRLSNRKLVADELGIGIATLYRKIKKYGLSSHSS
>PBPRA3467 YIJC, putative transcriptional regulator, TetR family
MGIRAQQKEKTRRSLIDAAFSQLSADRSFSSLSLREVAREAGIAPTSFYR
HFKDMDELGLTMVDEGGLILRQLMRQARQRIAEEGSVIRTSVETFMEFIE
SSPNVFRLLLRERSGTSTAFRAAVAREIQHFVAELTEYLEAKTGVTHEEA
YIQAEASVTLVFSSGADALDLDPQAREEHEEKLIMQLRTIAKGAYWYRKE
RERRELRHKL
>PBPRA1539 YPO1265, putative ATP-dependent helicase
MYIIEFMYTLRPYQQDSVKATVHYFRKNTSPAVLALPTGAGKSLVVAELA
RIARGRVLVLTHVKELVEQNHAKYESYGLKASIFSAGLGRKETDQQVVFA
SVQSMANSLELFANEFSLLVIDECHRVPDDENSAYRRVITHVQSINPGIK
ILGLTATPYRLGTGWIYKYHTRGQVKTEQERFFRDCIFELPIRYLLDENF
LTEPKVMDMAVIGYDFSSLTPSASGNYRESDLDSIIEKSSRATPMIIEQV
IDYAKDRKGVMIFASTVNHAQEILGYLAHENAALVVGDTPLDERDRIINA
FKRQEIKYLVNVSVLTTGFDAPHVDLIAILRPTESISLYQQIVGRGLRLS
EGKKDCLILEYAGNCYDLYQPEVGDPKPNSDSEVIMVPCPACGFNNSFWG
KLDPAGFLVEHYGRRCQGYFEDDDTGEREECGYRFRAKYCEECGADNDIA
ARRCHQCNAVMVDPDKKLRDALKLKDAMIMKCTDFRLEPGKNKFDKPQLK
VIYVSDEGAEISEVWPLSNKTQKENFLKKFINPHLVDRHRPFTDTAPTKV
ANNEHRLRPPEIVIARKSGRFWAIRDKLFDLDQYQKVEVTTTS
>PBPRA2347 YPO1576, putative response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family)
MFCCIFSTLLAMKDGCSLASFLHFLGYLQMIKVALVDDHIIVRSGFAQLL
SLESDINVVGEFGSALEARKGLPGSDADVCILDISMPDESGLSLLADLPS
GISCIMLSVHDSAAIVEKALESGARGYLTKRCSPDELVQAVRTVASGGCY
LTPDLTMKLVTPNRSRQPIEQLTKRERQIGEMLALGLDVKAVAVRLGLSH
KTVHVHRANAMDKLNVKNNVELAKCFESETV
>PBPRA2440 YPO2352, putative psp operon transcriptional activator
MHNKDNLIGESEAFLTVLDQASRLASLNRPILILGERGTGKELIAQRMHY
LSRRWDQPLITLNCAALSDGLIDSELFGHEAGAFTGAKGRHQGRFERAED
GTLFLDELATAPLGVQEKLLRVIEYGEYERVGGSKTCQANVRLICATNAD
LPQLAQDGKFRADLLDRLAFDIIHLPPLRERFNDILPLAEYYAVRMCQEL
GFGYFSGFTPQARAALLEYHWPGNIRELKNVVERSVFRHSLEDEPVEHII
INPFHAPWHNKQDHTRTTEGSTNALATDVIFPMDLRQWQQDQEIEIMRNA
LEQAKFNQRKAAELLGLSYHQLRGLLRKYQLVGSNEE
>PBPRA3430 YPO3737, putative regulator of sigma D
MLSKFEQVQQQWGGTSDVIDHWLVSRQQLLIDYCKLAGLPPFESNTRQLP
TSSQLQLFCQQVVDYISAGHFKIYDMVMEKWNTAGYSPTEDISLLYASIT
QTTDPILNFTDRYSDIAEENTLTDLDKDLSSIGELLELRFGLEDSLIELI
SESLACPPGA
>PBPRA3188 Z0174, putative sugar diacid utilization regulator
MQLNATIARQIVERTMKIIKYSVNVMDEQGRIIGSGDTSRLNQRHEGAIL
ALNDHRIVEIDDATSKQLKGVKPGINFPIIFQHKAIGVVGISGEPDLVRN
YGELVKMTAELIVEQAALMAQVQWNKRHREELVLQLIEEGSELNENQLLS
IAERLGLDLAQPRIAAIVKVYPVKGKSLSLDHLQRLVHLLEYPERDNLVG
IASVSMNEVVVLKPITLSDNGWSRALEQKRVNQLMKRVTKEGDFTIRIAL
GDYFPSLQGLSQSFMTAKATMEASNTINSQQDNVLFYQDHILPVLLNGLK
DDTWRQEQLLMPLVKLQQNDPRGVLIKTLKAFFVQNCDLAQTCEMLHIHR
NTLRYRLEKIEQETSLSFNNISDKTRLYLSLLSQP
>PBPRA2430 Z2905, putative transcriptional regulator
MNTLEKVQKNLDNFSKSERKVAEVIIASPQTAIHSSIATLAKMADVSEPT
VNRFCRRLDTKGFPDFKLHLAQSLANGTPYVNRNVEEDDSPDAYTSKIFE
STMACLDVAKNSLDPVQINRSVDLLTQAKKISFFGLGASASVAHDAQNKF
FRFNIPIVCFDDIIMQRMSVINCSDGDVVVMISHTGRTKSLVDIARIARE
NGATVIGITAKDSPLDRECSLSICLDVPEDTDIYMPMASRVVQMTVIDVL
ATGFTLRRGSGFRENLKRVKESLKDSRFSKENIL
>PBPRA0200 Z5065, putative transcriptional regulator, TetR family
MAGNKKTNRREEILQALAQMLESTQGSQRITTAKLAAQVGVSEAALYRHF
PSKARMFEGLIEFIEDSISTRINRILDDEKDTMNRLRMVLQLILVFAERN
PGLTRIMTGHALMFEQDRLQSRINQLFERIETQLRQVLRERKLREGKGFP
VDESVLAAQLLGQVEGSLNRYVRSNFKYKPTENFDHYWQLLSAQLG
>PBPRA2717 Z5512, putative transcriptional regulator
MSTVFLDIIDTVLSERENFNRIWFAGDQHAPPAFSYQVNFPRLELVLSGE
YINQLEDPVMGISEVSLMAGDAIYIPPNTWNKPNWENECSVLSLLFGKRQ
LGFSLVSKGKESVGFYDVQKHSIQAWTGHAIDHILSALNTLAKEPNHSPM
DEHLLMALLSYCRTMIHSPTQSAKTRSEDLYQGICIYIQENFHRAVTRET
IAHRFNVSPNHLSRLFRQQGHMRLADYICWVRLERAKFMLKKYPFRLHEV
ATRCGFQDVNYFCRVFKNKTGRTPTEYREIT
>PBPRA2355 Z5926, hypothetical transcriptional regulator LYSR-type
MLEIYLDSLLVSIYYFFIFSSNLMNIESKWLEDFLALADVRNFSMAAKIR
NVTQPAFSRRIKALEHMVGTELVDRSKTPVSLTPSGRLFRITARSLMNQM
VDGIGQLSDLSKLGGNMVRVAAAHSLATSLVPAIQPKLLAGKHSPLLSVE
AIDVDQAIEELQEGSCDLLLAFDDELLRLPPYQSLQIGQAELLPVCACNS
EGQPLYQLTKDKEVPWLAYSPSSYMGRQIEAIRDQVNLKAVFLSSMTDLL
KVLVLKGQGVAWLPDYAIQEELASGKVAVVGEPYLRLPITYYAYRYQARL
HPAGEQVWQTLRNLNGE