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# Vibrio fischeri ES114, ES114

>VF1469 transcriptional regulator, MerR family
MMGCMMIYNPKQLANHLKLIRTKHNLTQTELAKKVGVKQSTLSSFENHPE
TTQLQTLFKILHALEVHCIIQEQVPASHEDNLDDEAW
>VF1677 transcriptional regulator, AraC family
MKSLGELMQSYADHCGFNDLEGIKETAIPGVWFYRSSKGNQRQPFVYQSG
IIVLGKGHKNIYIGNQPVHYGPDDYLVVGVPMPLECEAFPENGEPLLGLS
IDVDSALLHRLVNELEEAKFQPCIQTSSDGFGLTSVKMANDMLESCKRLM
AALHTDLDTKMLGEALLTEIVYRVLTGPEGHVLFNLAHHDSQYARVAKAM
NKMHQSYANSLTVQNLAEEANMSVSAFHSAFRKITLESPLQYLKKVRLNK
AKELIQLEGKRVNDAAHLVGYTSTSQFSREFKRHFNVTPKGCLA
>VF0864 hypothetical protein
MYTLRPYQQDSVKAVIHYFRKHTTPAVLVLPTGAGKSLVIAELARIAKGR
VLVLAHVKELVEQNHAKYEGYGLEGAIFSAGLGRKETDKQVVFASVQSVV
RNLDEFKDQFSLLVIDECHRVPDNKDTSYRKVIEHLQTQNSGIKVLGLTA
TPYRLGIGWIYQYHTRGQVKTDTPRFFRDCIFELPIQYLLDEGFLTPAKL
LDAPVLSYDFSQLKPASTGKYKESELDLVIEESKRATPQIVQQIVEYAKD
RKGVMIFAATVRHAQEILSLLPPTESELVIGDTKLGDRDAIIQRFKNQET
KFLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAEGKTEC
TVLDYAGNCYDLYQPEVGDPKPDSSSEIITIPCPACGFNNNFWGKLDSNG
FLLEHFGRRCQGYFEDDEGTREECGYRFRAKYCNECGADNDIAARVCHEC
DAILVDPDKKLKEALKLKDARILNCIDLTLTAGKNQFNKPQIKVTYFGDD
DSEIHEVWQLATKKQKELFLKSFVRPHLVDRHRPFEETAATKIANNQHRF
RPPSFVIARKQGKFWSIRDKIFEE
>VF2343 transcriptional regulatory protein CpxR
MAKILLVDDDIELTALLKDILSLEGYNVIEANNGIEGLAAITDDLDLILL
DIMMPKMNGMDMLRKLRETNETPVLMLTAKGEEIDRVIGLELGADDYLPK
PFSDRELLARIRAILRRTQGKTKESNSSSIKYQDIELFVGKQEAYRNGEL
MELTGTEFGLLSQFIQKPGEIISKEDLSLEVLGKRLAPFDRAIDMHVSNL
RKKLPPLSEGKPRIKTLRGRGYLFVEE
>VF1572 transcriptional regulator, LacI family
MATIKDVAKLAAVSTTTVSHVINKTRFVAEATQKRVWEAVEELNYAPSAV
ARSLKCNTTRTIGMLVTQSFNPFFAEVMHGVENYCYKQGYTLFMCNTEGD
LEKQKHYLRMLAEKRVDGLLVMCSDLNEQLLTLLEKNTELPMVIMDWGPD
SPRTDKIIDNSEEGGYLATKHLIENGHTHIACITGQADKVTCKERVRGFE
RAHIDANLTFNPEWILEGDFECASASRAVDKILAIEENKRPTALFCFNDI
MALAAISKIQQSGLRVPEDISVIGYDNIELSAYFSPPLTTIHQPKRRVGK
TAVEILLERIKDKDHERRVFEMQPEVVTRSSVSNRLK
>VF1333 transcriptional regulators, LysR family
MTPYPTLPYSHNGFKAFESVARLMSFTSAANELNVTQSAVSRQVKQLEDD
LNASLIIRKHRSIQLTTQGLELYKTLQDNFTSLESVISSWQDPKPKRIVI
KAALSFATRALLPKIKEMNERYSDYEIVIIPSLEEDEALNTTDYDLLIFH
TRLRNHYDNKSNFSLLREEFMAPVCATSITTKDTVLDDVLQLPRLHPTVD
HLDWITWLNNEKYVPHQKVRNTSFHSLDLALSACLSGQGATVTDLLLILP
ELERNFYYCPRHTTLQHSAWVYYIHQHTHSSAINELIEWLQQEAKREIES
LKCLAKTHHWGGIINQIN
>VF1144 putative ATP-dependent RNA helicase RhlE
MSFSSQGFAPEIVKALTECGYQKLTPIQQKAIPLARKGHDILANAQTGTG
KTAAFALPVIQQLLDSKKSATRRTARALILAPTRELAEQIAVNIADYIKY
TSLTVTSVFGGKKMSSQERALEPGVDILVATPGRLQEHIEEENVSIANLE
FLVFDEADRMLDMGFVNAIRNIMMEVNTSPQIMLFSATSSAQMNKLASDI
LRKPKRISVDPENTTASTIAHVVYPVDEERKTELLSELIGRKNWQQVLVF
VNYKETANEIVKELKLDGIKAVLCHGDKAQSARRRALEEFKEGKARVMVA
TDVAARGLDIADLPHVINYDMPFLAEDYVHRIGRTGRAGKKGHAVSFVSR
EEELTVVQVETLIQQRIRRVEQPGYEPKNRDAYIDKVNTKSAFKNRKGRT
NNPNEDQSSAERRMRLKNVIQNKARITKLKK
>VF0119 hypothetical protein
MIFSPNSVSVPLIAPSVNLPTEQVARENRVKKPVAPTTKMSETTSEKAIK
GDDKQHKRDAWEPSDHPGYDVMEEKEEPKPHFATLYDIDDDLAKLARLLS
LDTYAQGEGTGYTIRFNLPKNLLDKLEEMGRMVRRRSVISFHYDKAVVPN
NPSDILAVL
>VF2450 RNA polymerase sigma-32 factor
MSKEMYSMAVVSQDSIDSYLRSVNSYPMLTVAEERELAERLHYKEEIEAA
KELILSHLRFVVHVARGYSGYGLPLADLIQEGNVGLMKAVKRFNPEVGVR
LVSFAVHWIKAEIHEYVLRNWRIVKVATTQAHVNCFLI
>VF1664 transcriptional regulator, TetR family
MARRNDHSHQEIREMALDNVKLFLNEHSHHELSLRKLAKSIGYVPSTLVN
IFGSYNLLLLRSIAQTLDELMLQISQGIENSATPEEALKAIAYCYYDFAQ
QQPNRWKLVFQHNMNGEALPEWQENRINQMMSILERMIFTINSTKTHEDI
VETSRVIWAGVHGITLLSLDDLLFSATPIDGHKLIDNLLLNYINQWKLH
>VF2427 conserved hypothetical protein
MNLTVSHLDKLRLPLLHKIYKENYPSGKPKGKEEIIVIEGDKKILGAMRI
KTYEECHFLTGMMIIKERRGESLGSQLLFKLNEFLSLEHCYCFCEPQLSE
FYLKNDFIHIDKKNIPHVLKSKHDRYTNTGKELDILLYKKTNN
>VF2060 transcriptional activator CadC
MVGICFQINDWTLVIEENKLYRQDREVSVEPRLINLLRFLAQHSGEVFCR
DELIKHVWDGAFVTDQVVTQSIFELRKVLRDGRLDNTRYLVTVPKRGYKL
VAETKQIRLEDTPYWKPCDTFTSTEADENQNHNVELNTEEQEKEQDETAQ
LSFPAGPLTRAVTNISNQVSNEKKKQGESFSFLHRWKLLAFDFFLVGVLI
AVIFSVTYQQTTTHITKAVDTDLIEFTYHASRNSNNETEYLADGISQKLM
ADLASVGHYRVQLNKTAFTTGILPGKAVNVRVEEQQNKTYLDVEYRSNIS
NRVLFSRQYLMTNANLEHVLRQSSQDLMRALGVQASEQDMNRLMLGLPKE
HGLLEMLVRANHFINQTDQKNFEKGIDLLENIALAEPNNDYVLSELYIAY
NAYSALNPELELDENTAKIEKLSQDLQARYALSDVGVLPSRIYEALAMIA
IKQDNKEDARAYLNLAFKNRESAFSYILEGKLAELDGDLDQAGESYSKAF
FMDTSLETYMLAENLAFYSDLETVAYFMYRAVNPSEVRLMG
>VF1255 transcriptional repressor
MATISDVAKLARVSTATVSRVINNSAYVEPVTLERVQSAIRELNYQRDAR
ASALAKKTNNTLGLLTGNLADPFFALIAKHVEEVARKHKCQLVVVSGGHD
AQREKEGLDFLISQGCEAMVVHAKMLDDATLLRYSAQLPSMVLLNRTIPQ
ISNRSVYIDNRAGAKESVVYLIKQGHRKIACVTSDLPIEDRTERLNGYRD
AMAEANITIEPNWIINQNFSEQGGELAGEQLLFQCPEVTAVVTFNDVMAA
GLMASLHENNIRVPDDISIIGFDDVLLARYLYPRLTTMHNPIDEMSSYAA
DLALKIKNTGYVPPSNHRFNASLVERQTVIPFSNKQALKV
>VF0454 transcriptional regulator
MGTQFRMDSVPGSLVVVGGSYEPWLAVLEQVGWRCHRCYDLRAAQALFDE
IGPCIGIVDLSQDDFSLNGIATLVNNNKQVRWMAFIRESQLSSDTICQFI
VNFCIDFFTAPIPDAQLLSTIGHQLGMLKLERKVWPNMGNKSDLGILGEA
PAVKRLRDQIRRVAPTDVSILISGESGVGKDAVAKAVHESSGRNKGPFVS
LNCGSLSENKIEQELFGSHSSSPEESKLFQANGGTLFLNDINDLPASQQQ
HLLRFLQEGNIETEKGFVDLDVRVIVASHIDLEKAIEEGSFKEELYYRLN
VLRIHVPSLKERSSDISVLAEHFLQRYAKEYNTQARTFSEEALQTMLHYQ
WPGNVRELVNQVKRAVLLADSMTIDLEHLDLPQRSETKRSLRVIRENSER
DALLMVLESHDGQVSSAAKELGVSRATMYRLLNKHNLISEPRSYS
>VF1654 IAA acetyltransferase
MKYRIVDISSEHDNDICYIIKNVGVEFGAVGEGFGPGDDEVLEMSAHYNP
KEKSKYLILLLNDRVVGGCGLSPFNNSGTICELKKLFLLPEARGRGFGKT
IAGKILKFAKEVGYAQCYLDTLSSMKSAIFLYEDLGFKRLSKPLDGTEHN
GCDVWMLKNLTECEIK
>VF1419 transcriptional regulators, LysR family
MSVIMKSTELNLIPIFVAIYEEKNLSKAAIRMNISQPAVSKALKRLREIY
DDALFHRNTTGVEPTVFASDIYPAMSAALKNFTSTLSASREFDPKTSNRI
FSIAVVSTVNYSLIPKLVKQLRSSAPNISLEIHPQFTEDLESDLRLQRYD
LVIDMAIRGRTILKSEVVYTERLRVVCSKDHPRIGDSISLEQFLSEEHVA
ASRWHSRSSLLNAEDIGELEARNIVIRAAGAFEMMPIIGSTEMIGMLPQS
SIDDLGDYYNLKSLDLPLNRQQHDLCSIWHPSRSNDSGHRWLRQQIQKAA
KNVF
>VF1396 transcriptional regulator
MKILVVEDDLRLGAQIVETLESADWVPELSQDGVDALYRATTEEWDAIVL
DLGLPKLNGLTVLKSIRDENINTPVIILSARDTLSQRVEGLNAGADDYLT
KPFEMVELIARIRAQLRRASGNASPILKIGDLSLDTRSSKVLWQDQAVSL
TALEYKVVAYFMHNPDKVISRTTLVEHIYKQDFDRDSNTVEVFIGRIRKK
IAPNIIKTVRGLGYQLNS
>VF1111 transcriptional regulators, LysR family
MEEKLGVRLLEKRGRELVPTETGKHYYQLLESQFSDLESNCHQLNEHVDE
VTGMIRLSLPYRFYHHYVRDLIVDFLLEYPKAQIEVNLCAEDTLPATDRD
LVLTFDISRADGMIARPLFLAKHGVFVTKSYWEHNQTKNIEELDWIRLND
QKNLTYTDEKQTLKEIHVRPRLEVNDLDQVLHATVKGLGAARLPVHLVTS
DMDLVEIFPDYSFPPRQSYLVYKQRKYQPRALTILVERIISVMER
>VF2529 transcriptional activator protein ilvY
MNIKLLQTFLHLCESHSFTHTSKAMHLSPSALSRQIQKLEDDIGHPLFIR
DNRSVELTSAAKQLIPIALNICSEWSGYKASSNVVNNALKGQLKLFCSVT
ASYSHLPQLLNDFKVNYPHIDIKLSTGDPAQAIEKIESSEVDIAISAVPE
KPSNKLAFEIISEIPLSIIAPLGNNQFISEINKENSNWELLPFILPESGT
ARNRANQWFKEQGIKPTIYAQVSGHEAIVSMVALGCGIGIAPDVVINNSP
VKDKVQRLNTLPIAPFKLGLCCKKSKLNDSVIQALWQVAENTFI
>VF0667 N-acetylmannosamine kinase
MKPCLTVDIGGTKIAAAIIESGKVLRRQQIATPSSSQPEEMDKALEELLT
PFLDDISTVAVASTGIIDDGVLTALNPLNLGGLNNYPLRAVIEKITKKPT
TVINDAQAAAWAEYQTLELNMVNMAFITVSTGVGAGVVINDDLLIGANGI
AGHAGHTLADPNGPICGCGRRGCVESIASGTAIGQAGKTYFGDNCTGEMV
FKHFSQNDPNATDIVNGSAKAIANLIADLKMVLDIELVALGGSVGLAPHY
LELVQHYLAQQPSPYQTKVQHARCGADAGLIGVAHWASKIR
>VF0574 transcriptional regulators, LysR family
MSSRLRVTIKLFKSIVLLLTMNEINWKAVDLNLLVAFSTLMETKSVSLAA
NKLFVGQSAMSHSLSRLRELLHDPLFERQGHQMIPTAKAIQLYPLVNKVL
QTISGDILKVDTFEASEFTGTFKIGMTDYAELLFAADIFDAIHQLAPNAQ
LCFTTVDKANYQDRFDSEPLDLVIGSMKPELKEFQYQTLYTEKHVCMWDG
QRHLFSSPITLDDYISLPHALVSPDGALKTGVDKELKALGVGRSVSVASK
HFLTIRHLMKKRDLICVVPELMAQLDLFSEKLVHSEPPINVGEFDIQLIW
QTRNKENKRYQWLKELLIQTIEKSVAVYRA
>VF2093 RNA polymerase sigma-E factor
MSEQLTDQVLIERVQRGDKQAFNHLVVKYQNKVCNLVARYVKNSGDVPDV
AQEAFIKAYRALPTFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPASDVD
AEEAEYYEGASALKEITNPENLSLSEELREIVFSTIDGLPEDLKTAITLR
ELEGLSYEEIAAVMECPVGTVRSRIFRAREVVEKKIQPLMQR
>VF2051 transcriptional regulators, LysR family
MFKLMLQFIQVAKAQNVTQAANTLCLSQPTLSHNMQKLEEKLGSKLFYRN
SKGITLTSSGEVLYEQAKMMQHLYENTLHKLEKNKLRHQTELKIGCGDAW
WHLFVRDCVQDFRDTNPHSNITIDVGDHLQLMNLLLSDEISIFVGHEILG
LAQYEDILFHPLFSSHEEVYVRKDHPLLERVCSDEDIARFPSVDLGASKK
RYAHLVQQQNNELSTFQKRHYLQEKVIYNTNSLLTALDLLQNSDAILPYP
VGMKVYFEGFGIVPLKMKKCFGKATIGAYLHKDGQQNKQSIALLEQFKEL
IKNNPQIKGKE
>VF0124 Ttk protein
MATPRKPNRRDEILQALAEMLESNEGAARITTAKLAKQVGVSEAALYRHF
PSKAKMFEGLIEFIEDLFFRVLTAFLKMKKIL
>VF2449 RNA polymerase sigma-32 factor
MFFNLRKNKKRLGWFNNGEVEAVAKDLGVAPSEVREMEARLAAQDSTFEA
PAEDDDRDMAFTAPVYYLEDKQSDVAYSLEEDNWEDYTNNRLANAIATLD
ERSQHIVQSRWLADEKATLQELADTYQVSAERIRQLEKNAMKKLKDAVGD
VL
>VF0606 glucokinase
MATYISFDIGGTDIKFGVLNEQGKVLEQGKVKTETCGEKIIATLVDIKEQ
WSKKYTFDGAAFSLPGFVDVNTGYLKTGGAIDDFYGFQFKDELTKKLSLP
VELENDVNCVALAEKWLGKAQHVENFICITIGTGIGGAIYINNQMVRGHG
FMAGEFGYMFTRNVFDIEDKATASMSFTASVREGLRRRYSTLKNINSIDN
ISGKDIFELASTGDEVAIKVIDDFYNNIAIGLYNLTFILNPEKIIIGGAI
SSREDLISNIEKKFNQIIKSQSSINEFNVKELVSIEKSTFNNDSGLIGAV
YHFLTMKNKFK
>VF2412 DNA-directed RNA polymerase beta' chain
MKDLLKFLKAQHKTEEFDAIKIGLASPDQIRSWSFGEVKKPETINYRTFK
PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRD
RMGHIELASPVAHIWFLKSLPSRIGLLMDIPLRDIERVLYFESYVVTEPG
MTDLERSQLLSEEEYLDKLEEFGDEFTAKMGAEAIKDLLASMDMQAEIED
MREELETTNSETKRKKVTKRLKLVEAFVQSGNNPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVITVGPYLRLHQCGLPKKMALELFKPFIYSKLEGRGLATTIKAAKKM
VEREEAIVWDILDDVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPASGDPII
VPSQDVVLGLYYMTREKINAKGEGMYLEGFAEAEKAYRTGVAELHARVKV
RITEVLR
>VF0462 transcriptional activator protein NhaR
MSHLNYNHLYYFWMVCKQGSVTKAAEALFLTPQTVTGQIKALEDRLDGKL
TKRNGRNIEPTELGQLIYKYADRMFGLSYEMLDIVNYSQQANVLFDVGVA
DALSKRLVSKVLSTTVPEDASIHLRCFESTHELLLEQLSQHKLDMILSDC
PVDSSQNSGLFSKKLGECEMSFFCSKELKGVTFPEVLEKHKVLIPGSRTS
MGRKVVQWCDQQGVTPNILGEFDDVALMKAFARENNAVFLAPSVYMNEAD
SDLSLHKIADVRDLKEEYYVIFAERMIQHPAVKSICEADFSHLFDF
>VF0608 transcriptional regulator, LacI family
MATINDVCKLAGVSKATVSRVMNGKGPVKEETKKLIFDAMETLDYKPSLV
AQALATNSSNSIGLIVSFFDGYYFGILLKEATRIAEESGKQLIVTDGHNQ
VETEIEAINSLVARKCDAILIYSRTMTADDYCEIQKKLPIPLVVINRTLP
DGLGHAVAFDQYNASQMAIEHLVGLGHKNIAIITLNMTSSTGQIRLKGAK
ETLEKHGIAYDDNLTIIKNGKLEDGYQACKELLKRSQDISAIFCFNDHLA
LGAIKALKEMNIRVPEDISIVGIDNDEISAFLSPALTTINIPIQKVTQLA
MDKALRLISDKEVKATTEILKGNIIVRESTKNIN
>VF0262 DNA-directed RNA polymerase alpha chain
MQGSVTEFLKPRLVDIEQVSTTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVTEVEIEGVLHEYSTKEGVQEDILEILLNLKGLAVKVEGKDEVII
TLNKSGAGPVVAGDITHDGDVEIANPEHVICHLTDDNAEISMRIKVERGR
GYVPSTARIHTEEDERPIGRLLVDATYSPVDKISYAVEAARVEQRTDLDK
LVIDMETNGTLDPEEAIRRAATILAEQLDAFVDLRDVRVPEEKEEKPEFD
PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIAED
>VF1690 transcriptional regulators, LysR family
MKLDDLNLFRQVVENGSYTAASRKTLIPVATITRRIQALEDSLDIRLLNR
HARKLSLTEAGQKFYDECAPILATLVNTSEYLGEECRGAAGKLKIAAPSN
LTKRMIQPILNKFMLLYPDISINLTMSNQPEQLDPTDWDIIFRVGKQRDS
SLIARQIGSLEDILVASPSYLEKNSEPTHAQELHKHSLLKGNPLMRWRLT
NKDGESVTITDAGRFEASELNVIRMACSNGLGITLMPDIMISQYLEEGSL
IRVLSDWSANPRDIYMIYNYKDHQPEKVRLFIDFVSNHIPD
>VF2460 ATP-dependent DNA helicase RecG
MTNTMLSAIPLTSLAGVGAKVAEKLEKIGLVSIQDLLFHLPLRYEDRTRV
YPMARVHSGLFAAVQGKVMSCDMQFGKRKMLLVKISDGNGTITLRFFNFN
AGMKNSFSEGKLVHAYGEIKRGGSGLEIVHPEYQFHVPSQPLEIEASLTP
VYPTTDGLRQNTLRSLTDQALELLDKAAVTELLPQGLYNNQITLNQALHI
IHRPDPSINLDAFDEGKHPAQQRLIMEELLAQNLSMLSVRSKGQQEDALP
LATLTNLKQKLLAQLPFTPTNAQQRVVAEIEQDLAKPHPMMRLVQGDVGS
GKTLVAALAAVQAIEHGYQVALMAPTELLAEQHAANFAHWFESMGITVGW
LAGKLTGKAKEKELERIASGEAKMIVGTHALFQQNVEFHHLALVIIDEQH
RFGVDQRLELREKGQKNGAYPHQLIMTATPIPRTLAMTAYADLETSVIDE
LPPGRTPIQTIAVPDTRRDEIVNKVRSACMNDGRQAYWVCTLIDDSEVLE
AQAASDTAEALRLQLPELNIGLVHGRMKPKEKQQIMQEFKEGNLHLLVAT
TVIEVGVDVPNSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHS
PLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQTGLADFKIAD
LVRDQHLIPEVQRIARHLHDNYPKNAKAIILRWLGERDIYSNA
>VF1676 hypothetical protein
MSVKEKKRGRPSGSNKQLSQKSIMIMAKELMKSEGKIPSIRKLATHLNVD
AMAIYYYFSNKNALLEAITVSLIEEIHQPKEQTDWQDELHLLCVSYLRLL
NTYTGLLETLLSMTSQGPADIFTERFSMIIEPLELDNTAKKNALDLLADY
LHGFALALHCNPSHELDISEYIKGPLNFYCLALKYSH
>VF0123 Ttk protein
MTGHALMFENERLRSRINQIFERIELQFKQILRERKLREGKAFPIDESIL
AAQLVGQVEGSFCRFVRSDFKYQPTENFNEYWALLSAQIQ
>VF0896 DNA transformation protein TfoX
MTGTGDVNLKIKEIEMSHLEERFFNFVKKLGRFNKRSMFGGVGLFNEDAM
FSLVTDGRLYVRGGGEVDARFEELGCERFKHVKKTTIATVNYFDVTELFE
KKPASLLSIVQEAMENSRLEREFKKSKENRRLRDLPNMQLTLERMVKKAG
VPDVDSFLEIGAVDVFKKVNHTYGGDVDVKLLWKFAGAESGVHWTLLQEP
AKQALLQQV
>VF2442 LexA repressor
MKPLTARQQEVFDLIKAKIDDTGMPPTRAEIARELGFRSANAAEEHLKAL
ARKQVIEIIPGASRGIRILLQDADHHDEELGVPLIGQVAAGEPILAQEHV
ESHYKVDPGMFKPQADFLLRVNGESMKDIGIMDGDLLAVHKTQDVRDGQV
VVARVDDDVTVKRLERKGSMVFLHAENEEFSPIEVDLTSQSLSIEGLAVG
VIRSTTWM
>VF1063 transcriptional regulator
MSMLDLHWLKTFVTLAELKHFGKTAAALHMTQPNVSLHIKQLEAATRVKL
IERNPFHLTEAGNRLLMTSQNTLMELQVCQADLNAINDLSRGTLTIAASD
IISRLLLIGPFQLFKQEFPGIDFSLLNTTSSQASELVKSAEADLGFVIAQ
KESQPLHFTELQQIKWCALGNHLEEWQQAYLDPTIVVDEEPTLILLGHDT
RTRDLLDLALPSLKLPKYRIMEVGSVDAQIDWAEAGFGVAIVPEFSIHPK
RDLKTKVTPLPEFPTTSLGYIVRQNQILSKAIKQLLKWVDDEIIRSQK
>VF1627 response regulator, GacA
MIKVFLVDDHELVRTGIRRILEDVRGIKVVGEADSGEDAVKWCRTEQADI
VLMDMNMPGIGGLEATKKILRFNPDVKVIVLTIHTENPFPTKVMQAGAAG
YLTKGAGPDEMVNAIRMVQSGQRYLSPEIAQQMALSQFTPDAENPFKELS
ERELQIMMMITKGEKVTDISEQLNLSPKTVNSYRYRLFSKLNISGDVELT
HLAIRHGILDAETL
>VF0877 transcriptional regulators, LysR family
MMDLNNITLLNQVVDSGSFTQAATNLGMTKSTVSRKLAELEEHLGVKLIT
RSTRKLGLTQEGEIFYQASVKVLDIMQQTELELTANQNLIRGHLNLAMPV
EIGHNVMSDYINSFLKHYPEVSINLEMTNREVDIIGDNIDLYVQIGEIND
SSLVARTIDFSERIIVASPEYLNNYGYIQTPEDLQAPHHQIRVVNAVKVP
NLYFNQVDKAIRVNLPYRLKVNTVTACKSACLSGLGIASLPEFICREHIN
NGELIRILPDWDLPRVAISLVFPQNKLLPKRLRAFIDHVLERFESKNAAR
K
>VF2421 transcription antitermination protein NusG
MSEAPKKRWYVVQAFSGFEGRVSQSLREHIKMHNMEELFGEVLVPTEEVV
EMRAGQRRKSERKFFPGYVLVQMIMNDESWHLGT
>VF2414 DNA-directed RNA polymerase beta chain
MKAAFRSVFPIQSYNGNSKLEYVSYNLREPEFDVKECQIRGVTYSAPLRV
KLRLVVYDKDAPANTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQ
LHRSPGVFFDSDKGKTHSSGKVLYNARVIPYRGSWLDFEFDPKDNLFVRI
DRRRKLPATIILRALNKTTEEILDLFFDKVFLK
>VF2361 transcriptional regulator, ArsR family
MLPHQFFKMLSDETRMRCLLLIAREGRLCVNQLTEALDESQPKISRHLAQ
LRQSGVLVDTREGQWVYYQVSSNLPGWLNKIIEGLKQSNCLQAQYQKDTD
KLNAMKACC
>VF2411 DNA-directed RNA polymerase beta' chain
MLWQIVPEGLPYSIINQKLGKKQISNLLNEAYRTLGLKDTVVFADQIMYT
GFAYAALSGASVGIDDMVIPDAKYTKVADAEEEVKQIQEQYQSGLVTAGE
RYNKVIDIWAATNEQVAKEMMDNLSSETVLNRDGEEEQQESFNSVYMMAD
SGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVNQYFISTH
GARKGLADTALKTANSGYLTRRLVDVAQDVVVHLDDCGTYEGVTMTPLIE
GGDVKEPLHERVLGRVVAEDVLKPGTDEILLPRNTLLDEKQCQIVEENSV
DQIKVRSVVSCEADFGCCANCYGRDLARGHMVNQGESVGVIAAQSIGEPG
TQLTMRTFHIGGAASTAAADNSIQVKTTGSIKLHNAKHVTNGEGNLVITS
RASELTVIDEHGRTKESYKLSYGTILTKKDGDAVNQGDKIASWDPHTMPI
ITEVQGQVQFVDMIDGVTITTQTDELTGLSSIVVLDAAERASAGKDMRPT
VKLVDANGNDIMIPGTEMPAQYFLPGKAIVNLADGGNVGIGETLARIPQA
SSGTKDITGGLPRVADLFEARKPKEPAILAEHAGIVAFGKETKGKVRLLI
TRDDNGEVYEEMIHKHRQLNIFEGDKVERGDVISDGPETPHDILRLRGIH
AVTEYITNEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHSGDSTFLEG
EQLEFANVTIANRQLEAEGKQPARFERDLLGITKASLATESFISAASFQE
TTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQERQKQKAVEQ
EGPSAEQATDNLAALLNAGFSSEE
>VF2299 hydrogen peroxide-inducible genes activator
MNIRDFEYLVALAEHKHFRKAAESCFVSQPTLSGQIKKLEDEVGLALLER
TSRKVLFTEAGLQLVEQAKKILLEVKRFSELANQQGKEMTGPLHLGFIPT
VGPYVLPWIVPTLKAQFPDLNLYLHEAQTHQLVKMLEEGKIDCMILASVE
ETNMFIEVPVYDEPMVLAVPKDHKWAKEVSIDMSRLSGESVLMLGDGHCL
RDQALGFCFAAGAKDDDHFKATSLETLRNMVAAGGGITLMPYLSVPKEKE
RDGVCYLPAQDPVPHRQIVLAYRPGSPLRARYESLAKEIENKMSNVIRS
>VF1790 ATP-dependent RNA helicase
MPFSKLGLSDPILKAIDELGYKAPTPIQQKAIPVALTGKNLIAAAQTGTG
KTASFVLPILEILSEDPTKVRAKRIRALILTPTRELAIQVEENIQQYSKH
IDITSLAMYGGVDYKEQKQRLIEGVDVLVATPGRLLDMYTQRAIHFDELD
ILVLDEADRMLDMGFIEDINKIIERLPLDRQNMLFSATLSDQVRYLAKTA
INNPIEISISPKTTSSPQIDQWLTTVDKDKKSALLSHLIKENNWNQALIF
IETKHGAAKLVSQLEKRDIRAEAFHSGRSQEARAKVLNDFKEGKLQYLVA
TGIAARGIDIDELTRVVNYDLPFPADDYVHRIGRTGRAGAKGEAISFVSK
DDFKNLCMIESRLGHLIVRKEIEGFAPRKEVPISILNYKPKRKPTPKN
>VF2393 transcriptional regulator, MerR family
MYLIGELAKQCNVTSDTLRFYEKNGLLVPSGRSSSGYRLYNDDNLAQIRF
ILKAKQLGLALDEIQELLAIRLEATKHSCAEVKAITQSKLNIIDEKIAQL
TDIRLALKSINDACCGHVDEDASHCSILSALAELEEKKD
>VF1269 DNA polymerase V subunit
MNVIPLHASAGISGFESPAAEYSQLSFDLDELLIEHPSSTFIGRASGDSM
QGVGIFDGDLLIVDRYVTVQSNDVIVANFNGEFVCKILDTQRRLLVSANE
RYQTVPINDYDTFTIEGVVTRSIRCHRPSYLLSQS
>VF2314 ribonuclease R
MSKIIQNDPFQDREAEKYENPIPSREFILEFFEKADAPLNRNDLFEALGL
SGEDSYEGLRRRLRAMERDGQLVFTRRQCYALPERIEMLKGVVLGHRDGF
GWIRPEGSLGKDNDVLLPFHQMKKVIHGDVVLVQPTGTDKRGRKEGRVVR
VLEPRNEGIVGRFFIEDGMGFVVPDDSRISQDIFIPKEHKMGARMGNVVV
MDITDRGSRARGMTGKITEVLGENMAPGMEIDIALRTHNIPHVWPAAVEK
QVEGLGEEVPEEAKEGRVDLRELPLVTIDGEDARDFDDAVFCQAKASGGW
RLWVAIADVSYYVRPDNALDKEAIQRGNSVYFPAQVVPMLPEVLSNGLCS
LNPQVDRLCMVCEMTISASGKLSGYKHYEAVMNSHARLTYNKVSDILDGD
EELTQRYEPLVPHLKELHNMYQVLKTAREARGAIEFETIETKFIFNADRK
IDSIEPVIRNDAHKIIEECMILANIASATFVEKAKEPALYRVHESPGEER
LQGFRDFLGELGLSLSGGLTPSPTDYGQLVHVIADRPDKELIQTMLLRSM
KQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEKGQN
NDRWTPTGGYHYSFDDMDVFGEQCSMTERRADDATRDVSDWLKCEYMQDH
IGEELEGVIANVTGFGFFVRLNDLHIDGLVHISSLANDYYQFDPAGQRLT
GESSGQIFRLGDQVTVKVVAVNLDDRNIDFECTSSMRKARGHGKTAKENA
KKRGAKEPRRDPNFKPKKKGDKSEPKGLGQLGERKSKGKKGKVKSKAQAM
VEPTKRPDGSTEGVKAKKKPKHKKKVRARKPKANK
>VF0526 transcriptional regulator
MQIALVEDNEILNHHLSSQLKDQGHVVYSDKTASAFLQTVQKKEHIDVMI
VDLGLPDFDGITLIKQIRRKEIHSPILILTARGNWQDKVEGLEAGADDYL
VKPFQSEELIARLYALARRAAGFTQSKVTAENIELDIKAKTIHVDGQFLQ
LTSFEYDIAAYLIKNSLKIISKQQFVDALYQEDSEVQLNNIEVIISRLRK
KFAAVGHNELITTVRGQGYQFQIKAK
>VF1095 transcriptional regulators, LysR family
MHDRASQMVIFYALAKAGSFTAAAKQMGVSTSHVSKQLGALEETLNLKLV
HRTTRSLILTDAGQQFFLYCETIYNAMTEASAIMDDERDEVAGILRLGLS
QSFGTMHIIPAIDKLRNQYPDLQVEVRLFDHQADMLKDGLDLWVTNFEDL
PEGYVAQRLADSNFVLAASPDYLIDKKVPHHPLDLVEHNCLTYQSRYRDY
SNWDFSKGNESLCVKVSGNYRVDLAEAVRDATISGWGIAYLASYLLTNEF
NDGKLIQLLPGWKASQKMPIYAVYPSRKHLPRKISAVIDFLREHIGQPPY
WDKALMKRVKL
>VF0270 superfamily II DNA/RNA helicases, SNF2 family
MSFALGQRWISDTESDLGLGTVVAVDDRTVSLLFAASEENRLYAKHDAPV
TRVMFNKGDTIESHEGWSLDVEDVIEEGGLLTYIGTRVDTDEANVVLRET
LLSHQIRFNKPQDKLFAGQIDRMDRFALRFRALQNQYEQHKSPMRGLCGM
RAGLIPHQLFIAHEVGRRYAPRVLLADEVGLGKTIEAGMIIHQQVLSGRA
ERVLIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAYADSENPFDTAQ
FVLCSLDFIRKSKRRFEQVVEADWDLLVVDEAHHLEWNQTKPSREYQVIE
AIAEETPGVLLLTATPEQLGHESHFARLRLLDPDRFYDYDAFVEEERQYQ
PVADAVTALMSGEKLSNDAKNRITELLSEQDVEPLFRIIESSAAEDEQAQ
ARQELVDNLMDRHGTGRVLFRNTRAAIKGFPQRNLNLMPMPLPSQYATSM
RVATMMGGRMTDEARAMKMLYPEEIFQEFEGDSATWWQFDPRVNWLLELL
KENRNEKVLIIASRASTALQLEQALREREGIRGTVFHEGMSIIERDKAAA
YFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQKRDIEIHVPYLQGTSQELLARWFDEGLNAFGETCPTGRAVYDKFAD
AIIAILATGKSDGLESLIEESATLNKALKSQLEQGRDRLLEVHSNGGDKA
KEIAEQIAATDGDTNLVNFALNLFDTIGLNQDDKGENAIVVTPAENMLVS
SYPGLPYEGCTITFDRETALSREDMNLISWEHPMIQGGIDLVLTEGVGAT
AVSLLKNKALPAGTLLLELVYVVDAQAPKQSGIARFLPKTPIRIMMDGKG
NDLSAQVEFESFNRQLSPVNRHMASKLVNSVQKEIHGLIDKAEISMEERL
ESVRTDAEKEMKAALNSELERLQALKAVNPNIRDEELTQIGNSNERTIWL
YW
>VF1570 TorCAD operon transcriptional regulatory protein TorR
MSYHILVVEDEVVTRSKLVGYFEAEGYQVSEAETGAEMRSILAEQKVDLI
MLDINLPGEDGLLLARELRSQSNIGIILVTGRTDSIDRIVGLEMGADDYV
TKPVELRELLVRVKNLFWRMSLANEPVELDESNVVRFGEWTFDIQRRALS
NNGEPVKLTKAEYELLVALSSYPNTVLSRERILNMISHRVDAPNDRTIDV
LIRRMRAKMEVDPKNPQIFVTVHGEGYMFAGD
>VF0155 transcriptional regulator, TetR family
MKTKDRIIHGALTLFNENGERSVTTNHIAAHLEISPGNLYYHFRNKEEII
SGIFDNYAKELKTRFQPMAEDQQSNMPSVQVMLSYLDSIFELMWNYRFFY
ANLPDILSRDDALKLKYTKAQQALNENLIAIMHSFRDSGLIDLEDDELQA
LTKTLHLVASCWINYQTALLSDNEITEAVIYQGMLQMLNVVRPMATEQGR
KQILELEEHYKGRL
>VF1460 transcriptional regulators, LysR family
MLLEGIETLLVLSKEKTMSRTGSVLYLSQSAVSKRITKLEKRLGKKLIEP
NGRYVTLTADAKSLIDNIAPTFSELCGRIYEQQALANDSLLRIDCSETLV
AGYFSQALSTCFHDDPNFTVTTNHTPRIVENVKSGKATLGLCAGYLPSGH
GLLSFHLFDEPFYVVSNKHLDKLPNELITTDLTNSANTHQSVILEALKVN
PIMELDSYTAAAHLALQGTAPALIPFSVIKALNIEERYLYQYSELKPLFR
PIYICTRQNNYRLERVQKVITALSEHVNIKL
>VF2404 transcriptional regulator
MLTRLNQFQAQWGGNSDVIDHWLSTRQDLLVEYCKLAGLPPFDSSVSTLP
DFASIQSFTQHLIDYISEGHFKIYNMVMEKWDATGFSPTEEMSQLYAHIT
KTTDPILNFTDKYSKDDEELLLSDFDNDFSTLGEIIEARFELEDGLIEQI
SSSLAHPPGA
>VF1542 acetyltransferase
MAPVIRRAKEIDLYCLNSLMYKLHDEHHQQCPDLFKTASEIEEEKSIARY
LDDPECMVYVAEMDDVIIGFITGHFCELISTVSKLVMMATIDELYIEKEY
RREGVAEQLMMRIEQELKDYGVKEIFVEVWDFNKGALEFYNKQGLNEHIH
YLRKPLNR
>VF1429 hypothetical protein
MQTNADFTFDEFSEKLWSIFHGQALITKFSFPLNDACFTFKSLKRNNVNF
YLFESPDPLSLFSFHLPSTSQPKTLLLLDVDNAGMLFNGILCEEHQFALI
SEKSQQPFCLQIPAHSPILVCDINTDNKQFHQLCGSLVPVGIDIKYAEEL
KIAVRNANNMFPNNHSNVGATLLMHIVELLSLHPIPMRRQALMGRSRLPR
RNFIPKCIDYMMEMSSTEAIKQLSKERNISEKTIRNAFKETTGFTPKEFE
QISKLFAFRRALKQPDIKTVFEAAIASDVYRWSRYASRYFKIFNELPIQT
L
>VF0444 ATP-dependent RNA helicase SrmB
MLKTFADLDLSPNLLRALEEIDYQRPTQVQAMTIPEALEGKDILASAPTG
TGKSAAFLLPALQHLDDFPRREPGPARILILTPTRELAIQVADEARQLAK
YTRHKVFTITGGISYQDHADILATTQDIVVATPGRLMEYIEAERFDCRAI
ETLILDEADRMLDMGFGPVVDRLSKECRWRKQTFLFSATLEGRGVEGFTA
DLLNEPAEINAEPSRRERKKITQWYHRADNMAHKIDLLKNILTEQAERSI
VFVKTRERLAELRGHLETAKIPCAWIQGEMAQESRNNAISRFRDGTVNVL
IATDVAARGIDLPDVSHVINFDMPRTADVYLHRIGRTARAGKKGNAVSLI
EAHDQPMMERVGRYIKEDDIIKERFIEGLKPKHKKPVFKNKQKKNAKKKA
ALAKKKAPKKKKK
>VF1408 glucokinase
MYYGFDVGGTKIEFGAFNEKLERVATERIPTQTENYSLLVDDIASLIAKY
DAEFGVEGKVGLGIPGMEDAETGALLTSNVPAAKGQFLRKDLEAKIGRSV
KIDNDANCFALSEAWDEELKDSPSVMGLILGTGFGGGLIFDGKAFSGYSH
VAGELGHSRLPIDAWFHLGENAPLLECGCGNKGCIDNYLSGRGFELLYAH
YYGEQKKAIDIIKAHAEGDANAVEHVDRFMELLAICFANLFTCFDPHVVA
LGGGLSNFELIYEELPKRLPKHLLSVGRVPRIIKAKHGDSGGVRGAAFLN
IKD
>VF2067 RNA polymerase sigma factor RpoS
MSKSNAVTKEVEEFDLDTINDAELTSIEEESERLEVSSSQKVMDATQLYL
GEIGFSPLLTAEEEVYFSRLALKGDEAARARMIESNLRLVVKIARRYNHR
GLALLDLVEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQT
RTIRLPIHVVKELNVYLRAARELSQKLDHEPTPEEIAEKLDKPVSDVSRM
LRLNERVASVDSMVAGESDKALLDILPDTKNSDPESETQKDDINTSLVGW
LGQLNPKQKEVVARRFGLLGYEAATLEQVGIEIGLTRERVRQIQVEGLRR
LREIMTNQGLNMETLFAVEEY
>VF0972 RNA polymerase ECF-type sigma factor
MLSEWQNHKAQLRNYVYKRVDDASAVDDILQDVYIKASSNLHQLKSKGSL
KGWLYKIAYNTIMDFYRDKLPYDELPEDLVAEDEDAVEESRKEIAECMRP
LIDELPDKYSVPLRLAELDGIPQQEIADKLGLSLSGAKSRIQRGRVKFRE
NLMTCCDFEINDGGMVTGYTPKKTNCSSPKR
>VF0105 DNA-directed RNA polymerase omega chain
MARVTVQDAVEKIGNRFDLVLISSRRARQMQTGGKDALVPEENDKTTVIA
LREIEEGLITKELLDARERQEQQEQDAAELAAVSSITHNR
>VF1716 transcriptional regulator, AraC family
MPFRTPNIANMTDKKFLPQLDENLPTDVFFHYFFLEAKTETLSHSHPWGQ
LHLIKQGRLEMEVDKQKMFCPANYAIWTPAHLLHRAFNHNDVEYCAINIE
FELSQKLPTSACMFPLTPLLRAIVDDLVERQTTEVLSTEDKYLSHVLIER
LSKTNPIENYLPFTDDKLLAPILMQLQENPADDSSLEIWAKRVFSTERTL
ARRFQKELKMSFNDWRQRAKLAKAMVLLKDAISINEIAYQLGYSQGSSFI
KMFRKHTGVTPEQFRKEQQGK
>VF0699 putative regulatory protein
MHCPFCSATDTKVIDSRLVSDGHQVRRRRQCLACSERFTTFESAELVMPK
VIKSNGNREPFDEDKLSGGLYRSLEKRPVSADLVELALNTIKSQLRATGE
REVPSDMIGNLVMDQLKELDKVAYIRFASVYRSFEDIKEFGEEIAKLEK
>VF1072 transcriptional regulators, LysR family
MKHKIHQLDLNLLKVFTVLLEVRNTRKASERLFLSQPGVSRALARLRDFF
EDELFIRSHYGLTPTPKALEIGDNIAPAMTLLFSALEPSDKFDSSQLEGR
INIAMNGFIAPSIASNLCGIILEKAPNVEVVFSNWDRATPENILHDQIQL
GLNYFPLEISKQLSQSVLTTDRFVLIGRKEHPLITGEESFENAAQLDIAT
LVIPNWNEHKAYVVNSLKSLNKECRMRLRSSYLDVILNSIQRTDMLFPCS
ESLANTLGSDFQKLLLPDDVIQPGGEIGLVVASKNRRTPLIKWLKECTQE
AAAEIKTYNLSQ
>VF2037 transcriptional regulator, Cro/CI family
MDTFGSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMA
LASFLKCDVNWLLTGQGSPEPAKQEQETTVVSVALKPQGSYPVISWVQAG
GWNDIHLTDLHDADYYPCPVRCSKNTFLLKVVGKSMNPVFREGELIFVDP
DVEAVNGKYVVARLDDENQATFKQLIIEDGKKFLQAANPDWPTPIIPING
NCTIVGVVISSMKLF
>VF2373 transcriptional regulator, DeoR family
MSKRNTKQRRHMILSLLTEQGEVSVEHLSDLFDISEVTIRKDLTELEKNG
LLMRKYGGAVLMPSNIIQEDNCEEVSNRKLSIAVAAVELIKDHNRIIIDS
GSTTAALINQLSKRNGLVVMTNSLPVANALQEIENEPTLLMTGGTWDSHS
DSFQGKVAESVLRSYDFDQLFIGADGIDLERGTTTFNELVGLSRVMSEVA
REVILMVESEKIGRKIPNVELPWESIDVLITNNDLSPEQQKKIESHNVKV
IRA
>VF0058 transcription termination factor Rho
MNLTELKNRSVSDLVALGETLGLENLARLRKQDIIFSILKQHAKSGEDIF
GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTIAGK
IRPPKDGERYFALLKVNAVNHDRPDNARNKILFENLTPLHANDRLRMERG
NGSTEDITARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAHNHP
ECELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA
KRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIA
EKRVFPAIDFNRSGTRREELLTKADELQKMWILRKIVHPMGEIDAMEFLI
DKLSMTKTNDEFFDAMRRQ
>VF1125 hypothetical protein
MMNIKPIRTEDDYKAAMARISELTSSDPDALLDNEFDELEVLTALAEAYE
NEYYKNEAPDPVIGH
>VF0670 urease accessory protein UreG
MQDYKQPLRIGVGGPVGSGKTALLEVLCKTLRDTYQIAVVTNDIYTQEDA
KILTQAEALAADRIIGVETGGCPHTAIREDASMNLAAVEELAQRHKNLDV
VFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITKSDLLII
NKIDLAPYVGASLEVMESDTARMRPTRPYVFTNLKEGVGLDKIIEFIVDR
GMLDAK
>VF0579 transcriptional regulators, LysR family
MRISLKQLNVFTVIAQEKTMTKAAERLYITKPAVSLSLSELEKNLGYKVF
DRVNNRLVLNSEGRQLLPLADELLERAEVIEHQFATDSQLTGSLNIGASD
TIGNHIAPVLLSKFQQQYPCDIQQLFISNTAQIINRLLEFQLDIGLVEGK
AHHPKLNMIEWRRDDMYLVCSPSHPLATKAQVTLDDLEHSTWLLREEGSG
SREYFINHIAANLNDWHESLQLHTTEAIINCCAENMGLACLSQLAAQNAI
NDGRLVKLAYNKTLARQYWLLVHKEKYQTPLLQYFMNFIQQK
>VF0485 N utilization substance protein A
MNKEILAVVEAVSNEKAVPRERIFEALEIALATATKKKSEMEIEVRVAID
RKTGDFETFRRWVAVENVENPTLEISIEAAQFEDETIEIGGYVEDDIESV
TFDRITTQTAKQVIVQKVREAERAMIVEQFIDNEGELITGIVKKVNRDAI
IVDLGNNAEAVILREDQLPRENFRPGDRVRGLLYAVKPEARGFQLFMTRS
KGVMLTELFRVEVPEIGEELIELKGAARDPGSRAKIAVKTNDKRIDPVGA
CVGMRGARVQAVSGELGGERIDIVLWDDNPAQFVINAMAPAEVASIIVDE
DNNTMDIAVEADNLAQAIGRSGQNVRLASQLTGWELNVMTVADLNKKHQE
EAQGSIDAFVKHLDIDADFAQLLVEEGFTTLEEVAYVPVNELLEIEELDE
DTVDALRTRAKEALTTLALAQEESLDGVEPAEDLLALEGLERELAFKLAA
KGVITLEDLADQGVDELSDIENLTEERAGELIMAARNICWFSDEE
>VF2268 Met repressor
MADWNGDYLSPYAEHGKKSEQVKKITVSIPTKVLQILTDERTRRQVSNLR
HATNSELLCEAFLHAYTGQPLPTDEDLRKDRPDDIPAEAKALMTAMGIEF
EAFDEE
>VF2522 transcriptional regulator, TetR family
MKEKRQLILESAEKLLATDGFHGLSMQKVANQAGVAAGTIYRYFDDKEAL
IEEIKLNIMQRVATAIQKDIDDNDPIKVRFRSMWLNIWHFAISEKNTFLN
RNQYEALPSSNLIKLKELEKKIFAQVNQLFIDGLEQGVFKPLSVEILVGL
SLEASVCLARKHSQGFFTLTDDDLNSAIEASWDAIIKH
>VF1066 transcriptional regulators, LysR family
MGQLESMRIFITVVETGSITKAAERLNLAKSAISKRLSELEHQLGVKLLN
RTTRTSSLTEAGQVYLNKCKLILDEVDDLHCHISSTSSKLNGVLKLAVPL
TFGLKHLVPALDNFAKLHPELKLDIDFSDKKIDLVEDGVDLAIRIGSLSN
STLRAKPLAPIHHVLCVSPDYLTEHGHITTPNDLKSHKLLRYSQQPLSGV
ELIDNNNKTMTVPMESFCIANNGDFLKTMAVSGHGVLFTPKFIVWEELAN
GSLIPIMTDYRFNSIKAYAVYPETRYLPRKVRMLIDFLSEYFGNEPYWDK
>VF0803 transcriptional activator RfaH
MKQWYLLYCKRGEQERAKLHLENQMVECFYPEIVVEKIVRGKRKQVKEPL
FPCYMFIYFDFEVGPSFTSIRSTRGVSDFIRFGAQPKVLQGDLIYSLKAL
DENNNKEKLECLPEAGQKVAIKEGPYSGIEAIYKEADGEKRSILLITLIN
KKVEIKIPNSDIEY
>VF0871 transcriptional regulator, TetR family
MSKKSQIIETATRLFAEHGFENTPVSLICEEAEVSKGAVFHHFKNKNDIL
REVFIHITTIIEETDKNDVHLATQEDPLEAAIHEIFDGMSVAKYRKMYQF
NFSVMVHPTTRAIVADLIEDRYQQLQTSAEEIFRAVGYSNPVVITKMFIA
EIDGIAMNYLLNNDFPLMDIKQEFIKKYCQ
>VF0275 arginine repressor, ArgR
MRNNEKQELLVKEFKAILKAERFGSQGEIVDALRQSGFDNINQSKVSRML
TKFGAVRTRNAKMEMVYCLPVELGVPTVSSSLRELVMDIDYNNALVVIHT
GPGAAQLIARLLDSLGKAEGILGVVAGDDTIFITPTRNIEVAELFDSVCD
LFEYSV
>VF0121 transcription elongation factor greB
MKTNLITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQY
NKKRLREIDRRVRYLRKRLDQVKVVDYSPQQDGKIFFGAFVEIENEQGDT
LSFRIVGPDEIFGRNDYISIDSPMARALIKKEVDEDVIVKTPDGDKEWFV
NSIRYQV
>VF2120 aerobic respiration control protein ArcA
MQTPQILIVEDEHVTRNTLKSIFEAEGYNVFEASDGEEMHKVLSEQQLNL
VIMDINLPGKNGLLLARELRERGDMALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLTRSMNQNTVVEDKKMVERYVFNGWTVEINSRS
LVSPSGESYKLPRSEFRALLHFCENPGKIQTRADLLKKMTGRELKPHDRT
VDVTIRRIRKHFESVTDTPEIIATIHGEGYRFCGDLEEL
>VF0387 RNA polymerase sigma-54 factor RpoN
MKASLQLKMGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLDVE
EEALSTPETLTSPEPKSEKETASAEQETPITDSSDVIESNNISEELEMDA
SWDDVYSANSGSTGLAIDDDTPIYQGETTESLQDYLMWQADLTPFTDLDR
TIATTIIESLDEYGYLTSSLDDILESIGDEEVEMDEVEAVLKRIQQFDPL
GVASRDLAECLLLQLATYPANTPWLPETKLILKDHINLLGNRDYRQLAKE
TKLKESDLKQVMMLIHELDPRPGNRVIDTETEYVIPDVSVFKHNGKWVVT
INPDSVPRLKVNAEYAALGKTMGNTPDGQFIRTNLQEAKWLIKSLESRNE
TLLKVARCIVEHQQDFFEYGEEAMKPMVLNDIALDVDMHESTISRVTTQK
FMHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALVKKLVAAENQAKPLS
DSKIATLLAEQGIQVARRTIAKYRESLGIAPSNQRKRLL
>VF2003 phage-related protein
MTNQLTFQNTHFNLIEQNNKIWLSASQIGAALGYKDTSALNRIYARNIDE
FSSSMSGSVKLTDPRGVEQNARIFSLRGAHLLAMFSRTNKAKEFRKWVLD
VLDKETSPQKNDYLQSHPKRRTRILTMLEMDSVVSVTPVPDDAMVFAPSD
IPSIVREPGFFKVKDLLEIANAVNEQLRLICK
>VF0591 glycine cleavage system transcriptional activator
MSRRLPPLNSLRVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGL
KLFRRRNRSLLLTEEGQSYFLDIKEIFSSLSEATDKVLERSAKGALTISL
PPSFAIQWLVPRLSDFNNQEPDIDVRIKAVDMDEGSLTEDVDVAIYYGRG
NWPGLRVELLYQEQLLPLCSPQVLLNEKPLATIDDLRFHTLLHDTSRKDW
KQFVKHYELAGMNVNQGPIFSHSTMVLQAAAHGQGIALGNNVLAQPELDA
GRLVAPFEEVLVSKNAFYLVCNEKQADTGRIATFREWILSKARSEQEIVD
DE
>VF1578 transcriptional regulator, AsnC family
MGKHELDKVDTTLLSLLQKDCTVSLQELADAVNLTTTPCWKRLKRLEEEG
ILEKKVALLNPEKLGLSFNAFVLIKTSNHSQEWYNRFVDTVSDFPEVMEF
YRMAGEYDYMMKVLAEDMKAFDGFYKKLVNSIDGISNVTSTFAMEPLKYT
TELPL
>VF0791 toxin transcriptional activator ToxR
MNTENNKIIIGDRFLFDPNDNSLIDTLNDDEIIRLGGNESRVLSLLIQEP
GKVVSRHELHEYVWRDQGFEVDDSSLTQAISTLRKMLQDPTKLPVYVKTV
PKRGYQFISTAVAQVDPDQQTEVETEHNLENTPSIDSLNTASVHQDDAQE
AQAVAPQQNATINQPSTTNSAPQAHLSLLGTIMLIIAFVLPIIAYVNHTP
KSDAFVQVANYDNTPVFVPVNHPSIEQWKPLIEQCTNFYNSKHTDSLKPI
EVIATSGQPNQITLNYIHSEEHSDQSISVRLLIDQKGVDKVCG
>VF2413 DNA-directed RNA polymerase beta chain
MMELIPERLRGETATFDIEANGKVYVEAGRRITARHIRQLTKDDITHIEV
PVDYIVGKVASHDYVNEDTGEIIIAANQEFSLEDLANLSQAGYKKIEVLF
TNDLDHGAYISDTLRADSTVDRLSALVEIYRMMRPGEPPTKEAAEALFES
LFFSEERYDLSTVGRMKFNSSIGRDNDEGAGVLDETDIIEVMRKLIDIRN
GIGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVRERLSLGDLDAI
MPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGG
LTRERAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLSAFAQCNEYGFL
ETPYRRVVDGQVTDQVDYLSAIEEGTFVIAQANAVLTEEGTFADELIIAR
QKGESGLHPREHIQYMDVATNQVVSVAASLIPFLEHDDANRALMGANMQR
QAVPTLKADKPLVGTGIERNVAVDSGVTAVAKRGGVVQSVDASRIVIKVN
EDELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVTRGDVLADGP
STDLGELALGQNMRIAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELS
CVARDTKLGSEEITADIPNVGEAALSKLDESGIVYIGAEVKGGDILVGKV
TPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNSVSGTIIDVQVFTRD
GVEKDKRALEIEQMQLKEAKKDITEEFQILEGGLLARVRTLLVAAGVSEV
KLDAMDRKQWLEITLDDEAQQNQLEQLAEQYDELKAEFDKKFETKRRKIT
QGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPVEDMPY
DEKGQPVDIVLNPLGVPSRMNIGQILEVHMGLAAKGVGDKINQMLKEQQE
LHKFRNFLQKVYDLGETRQEVDIAALSDDEVRTLIKNLRGGLPIATPIFD
GAPEASIKELLKLVDLPESGQLKLFDGRTGDAFERPVTVGYMYMLKLNHL
VDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIE
LEDEE
>VF2265 probable activator protein in leuABCD operon
MNTPETSLSSVARTEQILRGVDLNLLTVFDAVMQEQNITRAAQNLGMSQP
AVSNAVSRLKLMFNDELFIRHGRGIQPTQRARQLFAPMRQALQLVKNELP
SSTFSPETSMRQFKLSICSPSDIRFAPRIMKDIQNKAPHISLKLSGEHEP
DIAQKLRYQEVDFVIDYVRFDEPGFMSTELFTDELVVVASVNHPRLQNGI
NKEQLASEKHAVPARIANTKGFADHLYVDSLYEQAYKGASISNILYVVSQ
SELITVAPKWLVNSMPNRDQLMVLPLPIESKGISGYLSWHDSYQKDKGHI
WMRDQLMLICGEEVVASSKGMMF
>VF0102 acetyltransferase
MFRLITPTTEAELKAYYHFRWKILREPWRQPEGSERDAYDDMSQHRMILD
GRDQPVAVGRLYLTPDNDGQIRYMAVAPHCRGKGIGALIMVALESYARQE
NAKRLVCNAREDAIPFYVGNGFTSQGELSDERGPVRHQQMLKHLDPLADV
LRRPDWCAELQKRWENEIPISDKMGIKITQYTGYRFEVSAILNANLNPHN
SMFAGSIFTMGTLTAWGIVWLLLKERGLDTTSIMLVDSHIRYRQPIVDNP
KGITSLNCLEGDFDRLQSGKRARVKVKVDLCNGDNPAAEFTGTFMLMRD
>VF0782 transcriptional regulator, MerR family
MNISEVAKLTGLTAKAIRFYESKGIIKEASRGANGYRQYTQHQVDELLLI
RRSRLVGFSLDECQELLNLSNNPNRRSADVKQKTLEKVSEIETKIEELER
MKKTLLDLADACPGDDSNDCPIIKGLTCCHEKK
>VF1009 ATP-dependent helicase, DinG family
MLNKSVTDSIRQSYKTLQDQLPGFIPRRAQNYLVAEIAKSLAGEYSDSNR
MIVAEAGTGIGKSLAYLLSAIPYAKLNNKKVVISTATVALQEQLAHKDLP
FYRRISPLPFSFIIAKGRQRYCCSHKLSLLTESNNEDDKQVALFTEKPKK
KELDLLKRMYKALAEGKWDGDIDSWPTTIPSSIWQSIVSDKYSCHNGLPM
HRECPFQKAREHLDKADVVIANHSLVMADIDLGGGVVLSEPEQTIYIFDE
AHHLPNVAREHSSAAASLKGSASWLESLNKSVSKFCNLADQKRVNRFQNS
LHEHIQELIPTLNQLSKQFDPTLFNDDGVYRFEHGEIPNWLAEQSKELKE
VSTKANQALAKISDLISERMKDGELAPRMAEPALAEIGFYLQRLENLAQV
WFLMAKPNSDKGAPLARWLEKSQDRDGDTFINVSPLEVGWQLDQNLWSRA
AGAVVVSATMRALNSYSFFCKQAGISEKPEDGVRFLSLASPFNYQENAQL
VIPKLPMEPSAAGFTDLLIEELPFYLAEQSSSLVLFSSYWQMNKVAEGIE
KIVKKHGWNLLIQGQESRQEILKKHKKLCEENKISILFGTGSFSEGLDLP
GNLLTNLIITKIPFGVPTSPVEEAHSEYIESRGGNPFMQISVPEASKKLI
QSVGRLLRKEEDSGRVVLLDRRVITKRYGKALLDALPPFKRLIE
>VF0400 toluene tolerance protein TTG2F
MDSAEIKELLDAALQLEEIHVKGEGSHFEVIAVDASFAGMSRVKKQQTIY
GPLMEHISTNTIHALSIKAFTPEEWARDKKLNSLF
>VF1353 virulence gene repressor RsaL
MSNRDLFTELSSALVEAKEHSEGKVTLKTHQVNDISELDISPDEIVSIRE
QFNMSRGVFARLLHTSSRTLENWEQGRSAPNGQAVTLLKLVQRHPETLSH
IAEL
>VF0559 Trp operon repressor
MSGSAKYSDWSQVMTLIANAAEQGNHQPLLTMLMTPDEREALVARVNIFH
ELLQGELSQRQISQLLGVGVATITRGSNELKSHTDEEKVWLMDLLEKSTK
SELDVEKE
>VF2510 transcription antiterminator, BglG family
MIQLPYPRLNVIFEALRYEALPQQELAQRCDISTRTIRTDISALNDILAS
YGAQIQHQRGKGYHFDIYDETRFLDIEKQTKKMKSSPRNAKDRMVYLMMR
LLSQEEECKLDDLANQWFVSRTSLQADMGEIREQLEQYNLELISKAHCGL
RLFGEEQAIRACIAHILFQFKPSDHTFIDVCEYFFPEINQPSLKTDLLEL
INKNHIKLTDEGLHHLVVYCGVALHRLKQNACIHHVDQPNLSEEAQKTAA
ELSQTIESLLGAPLPQAEIDYLSIQIAARRVTGVPEIDTQKPTEQLELTQ
YLLDYVNTHYNYDLRNDEQLKRDLLCHITTMILRVKYQITIPNPLFDHIK
RYYPLAYDMTVAAISHWGKHLIPDGEIGYLVMHIGVGLERNFSLEEQLPP
KALLVCDSGTSIVRLLESQLIRSLPQLTIEKVESLRDYEELSKVDADFVI
STEKVSQKNKPTITVSPIPTSFQLEQVNKLILMNRSHPYMLDKFFDHRYF
SVLDEPMTQGEVLKKFSAHFTEDNITPIEFYDSVIERESITSTILGEGIA
IPHSLGLLANETKVYTIISPHGVDWGNGKIAHVIFLFAINKDDYEEAMSL
YDLFVTFMNGKAVDTILGCHSYDEFQYVAKECWFNRKKDW
>VF1545 transcriptional regulator
MNVESKWLEDFLVLAKVKNFSQAAELRNVTQPAFSRRIRLLEDTVGAELV
DRKSKPIELTPSGKLFRITARTLVNQIEAGISQISDLSQLGGNVVQVAAA
HSLATSLIPKMQQAFDEGDYKPILSVEAIDVDEATKELREGACDILLAFD
DDILRLPPYQSQLIAKTELLPVSACDEMGKPIYDFISQGAVPWLTYSSTS
YMGRQVEIIREQVALTPIFSSSMTDMLKILVLNKQGIAWLPAYSIQEELA
QKKVAIIGEQSLRLPIEYYAYRYQARLHPAGEKVWSILCNLDT
>VF0806 N-acetylglucosamine repressor
MTGGQIGNVDLVKQLNSAAVYRLIDQKGPISRIQIADVSQLAPASVTKIT
RQLLERGLIKEVAQQASTGGRRAISLTTETSPFHSIAVRLGRDYIQLSLF
DLSTKELASEYQEFHYSNQEHLLDGLKLLLEGFISKNQDTIKQLIAIGIT
LPGLVNPETGVVEYMPNTDVNKLLLADFIKDNFNTECFVGNDVRGLALAE
HYFGASQDCYDSILVSVHRGTGAGIIVNGKVFLGHNRNVGEIGHIQIDPI
GDKCQCGNFGCLETVAADPAIIARVESLLKQGYPSSLSQLPKITMTDICH
AANHGDELATQTILRVGNQLGKAIAMTINLFNPQKIVIAGAITHADKILF
AAIRNCIKNQSLTTFHKDLPIVASELYDQPTIGAFSMVKRAMLNGVLLQK
LLDE
>VF0039 virulence genes transcriptional regulator PhcA
MSYILNKAPNVMLDTHAWDTNTLKKLQSGEMDIGITGKDLDPKYANITMH
TPEDICSKEIYRDSQMCLVRRNHPVLKQEWTLDTYLQQRHVQVRCDGKDQ
WLLDYKLADRGLERSIGIIVPDFNSAASLCTHTDLVFTAPSHFIKLIAEQ
LNLVVLPLPTDLPQMAYTLFWHQQKENDAANCWLRNTIINHCKDLSISTI
ADEH
>VF1633 fatty acid metabolism regulator protein
MVIKAKSPAAFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLRE
VLQRLARDGWLTIQHGKPTKVNNYMETSGLHILDTLMTLVDANNATSIVE
DLLAARTNISCIFMRQAFKTNKEGSLRTLNRVIESCEQLLAAESWDSFIE
ASPFGAKIKAEVKEDNEKDPVKREEILIAKTFNYYDYMLFQGVAFKSGNQ
IYGLIFNGLKKLYARVGSYYFSNSEARELALQFYRDLKLICEEERKDAVM
PRMRQYGMEGNLIWNEMKLNLPSNFREDDS
>VF1354 ATP-dependent DNA helicase recG
MKIVELQEKESLYYCTKDEDHFFDRKAFGLKGEKVQKIAVAFANADGGEI
LVGIADDKDEVIPEKRWQGQESTEAYNSVIQALSELVPSVDFRFDFLTRV
NESRNYVLRVKINKGLSVHETAKKKIFLRQGAQSLPVTAPIKILELTHAK
GIISEEDSLVNSASIDELDSSIELTKFLSELPIRAPDPITFLLKEKLVDS
ETWAPTVAAVLLFAENPSAELPKQCAIRIVRYDTDGEDIDRDALTEDNIA
IEGSLYQQIQDAYSKIELFLSKNKVWKVEGLVETKYPKETIWEILVNTVI
HRDYAISDNVLVSIFNNRIEFKSPGRFTGFVTAENILENRCSRNSKIVRI
LSKYKDSPNKDLGEGMNTAFQRMRSMGLRDPEILEDGNYVKIILRHSSND
DPETLIMKFIESNGEINNRQARDLTGIDRTEKVTYQFSKLRDKGLIQRKD
SSTGLKSSWIAV
>VF2490 hypothetical protein
MARITAEEKEQKKNQYDALIFQIFTEEGWDAVTYDRLAKELDIGKSSLQR
YYPSNLFFATALQGKVFPLAIQKLDLSSKSAFIQSWLTAYHDENDHIFHE
VIRMLMANIMNHGGAPATKSAIGRLIALLAQTLGEDDAKDAVITALGYTI
YSYIEQ
>VF2572 chromosome partitioning protein ParB
MSNKRGLGKGLDALLATSSIAREKQTAAAQSESISKDAQLVELGIHQLSA
GQYQPRKVMEEEALEELSASIRSQGIIQPIVVREVASQQYEIIAGERRFR
AAKKAGLKHVPCVVKSVEDKAAIAMALIENIQREDLNAIEEAQALERLQQ
EFELTHQQISDVIGKSRTTVTNLLRLNALTDEVKGLVEQKELEMGHARAL
LALENEQQVELAHLVIKKKLTVRQTEQKVKELLAPQKEEEPKEVDTEMMT
ISDKLSSTLGSKVVISRNAAGKGKVTITFDEAHKLEQLIAKLES
>VF2374 two-component response regulator
MDDNYTIIIADDHPLFRNALFQSIHMAISGANLLEADSLEALLKVLEKEP
EPDLLLLDLKMPGSNGMSGLIQLRSQYPDLPIVVVSASEEASIVSQVKTH
GAFGFIPKSSDMKSLIGALNQILAGDSYFPAGAIKNSAACDDLATKIAAL
TPQQYKVLGMLSDGLLNKQIAYDLDVSEATIKAHMTAIFRKLGVKNRTQA
VILLQQTES
>VF0998 transcriptional regulator
MPELLMNITSEQQSDFNKFTQCWLSGILKHSGAQKVICFLSQPSGAQLFK
MAEGYSDSKHQPQITSLPFENKNDKNNIINTDYREFNTLTLCMSEGRNFN
LHFSQCTDDIKHILFEQSEYYTLTDGEVEFMPLRNSQQRISGVLMFYFSN
FSTYQKSDRQTIYTLNSLAIDRIALAIKNSYALLDQKIAPHSSTTHIPSD
FNIVGDSSAIKEVRLNISKALHINRNVLVTGETGSGKELIAKAIHQFGNR
RNEPYVVQNCASIPEHLLESELFGYQKGAFTGADRDYIGLIRSADKGILF
LDEIGDMPSSLQAKLLRVLEEKKVRPLGSTTLYDIDVKVVAATHQALIKK
IEQGEFRQDLYFRLAQFTIALPPLRERYGDIALLSHFFTKHYALELHQPT
PALTNEFISYLDNYSFPGNVRELKNIIERCCMEAPDCQQLDKSVIEKVLN
SIMMMTPKENKEQALTGSLSSQIDQFEKNVLMQYLEKHQGHLQTIANHLE
LSKGSLDYRLRKFNLSAKEWRY
>VF1081 transcriptional regulator, TetR family
MAKNSKFDRVQVVDKAVDLYWEKGFHGTSMRNLQEVIDMRPGSIYATFGS
KEGLFKESLQRYTQSGILHLEQCCHEQKSPLLGLKSFIHNIVVEKRSSAP
SGMCMLVKTVTELTNENEELLTEAKRSLKIMESEFEKVLRQAQEIGEIEK
EKDTKQLAQFVQVQIAGLRTYARTVDSDLPLQNMLDNMFSHYPF
>VF1783 nitric oxide reductase regulator NorR
MKNIKDEWVQIALDLTSGLSSKDRFERLLSTIRNALKCDASALLLFKNQY
FSPLATNGLDGDVIGRRFAISQHPRLEAIARAGDIVRFPSDSDLPDPYDG
LIANEERQLQVHSCIGLPLLVNERLIGAVTIDAFDPTQFDSFTNKELRII
SALAATSLHTALLMERLENQSGENSNNSSFERSPDNHVEMIGESLAMQEL
QANINAVANTELSVLITGETGVGKELVASALHQRSTRAQQNLVYLNCAAL
PESVAESELFGHVKGAFTGAISNRKGKFESADNGTLFLDEIGELSLALQA
KLLRVLQYGDIQRIGDDNHIKVNTRIIAATNKTLSDEVKNGDFRADLYHR
LSVFPIFVPPLRDRGNDVTLLVGYFAEKSRIKLAATSIRITPEAITLLND
YSWPGNIRELEHVISRAAVLSRAQSDDSDLVLSPTHFLIKKENHAEKNIA
NQIVTPHSKNTKDLRSATDEFQANLIKKTYQEQQQNWAATARALQLDTGN
LHRLAKRLNLKE
>VF0656 transcription elongation factor
MINKEALLDSIIDELRKIHQLALDATQRAIDQATDKEAIARSKYETFGLE
ASYLAHGQAVRVSECEADILAYRKLPRLVYTENSSINQGALVTLVNQDDV
ESTFFIGPSAGGVKVAHQDLVFSLITPSAPLGKAMIGQQVGDEFELNLAG
KKQQYEIIDVQ
>VF0040 transcriptional regulatory protein
MFFEKLAKIDLNLLLTLHLLLEEKSVTRAAQRLCLSQSAVSKNLAKLREQ
FNDPLFSRTSYGLQPTAKARNLQEQLHTLLSHLESITEASILILKAVIID
FA
>VF2155 carbohydrate diacid regulator
MQLTTMIAKQIVERSMKIIKHSVNVMDEYGVIIGSGDPSRLNCRHEGAIL
AINENREVEIDYSTAQQLRGVKAGINLPIVFQNKVIGVVGISGKPSEIQQ
YGELVKMTAELIIEQAALMTEIQWSKRHKEELVLQLIQPSDLNTQQLYSI
AERLELDLNQPRIATIIKVDSFNGENLSLSHLQKLVHLLEYPERDNLVAI
SSVTLNEVVVLKPITLTDTGWNRSHEEKRIRQLFQRISHDEKFTIKIALG
DYFPNLEGLAQSYMTAKATMSTANAKNRILFFQDNKLPVLINGIKSDTWR
MEQLKQPIVNLQKSDPKGILLKTLKAFFNHNCDSAQTCKSLHIHRNTLRY
RLDKINKETSLDINKINDSTYLYLASLMSNK
>VF0704 N utilization substance protein B
MGVSVKPAARRNARQFALQAIYSWQLSKENVADIEEQFLTAEKYDEEEHH
ANEPKLQTPETDVAYFRDLFSGVALNHMKLDGKMRPYLSRPLQDLDQMEL
ALLRMSIYEMMNRDDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAP
TLRKK
>VF1320 SIR2 family protein
MLFPYKNIVILTGAGISAESGIQTFRASDGLWENHRIEDVATPEGFLNDP
DLVQDFYNKRRALLKSDNIQPNAAHKALAKLEKELDGTVTIVTQNIDNLH
ERGGSTNVIHMHGELNKIRCEESNQVFECTDDIHTGDFCHCCQIPAQLRP
HVVWFGEMPLEMGRIHEALNQADLFISIGTSGSVYPAAGFVHEARLHGAH
TIEINLEPSAVDDEFEEKRYGKAGELVPELVSELLEI
>VF0904 leucine-responsive regulatory protein
MVDNKKPSKELDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRR
LERQGYINGYTALLNPQYLDASLLVFVEITLNRGAPDVFEQFNAAVQLLD
DIQECHLVSGDFDYLLKTRVSDMSAYRRLLGDTLLRLPGVNDTRTYVVME
EVKQTNHLVIKTR
>VF0434 transcriptional regulator, AlgH
MNLKNHFLVAMPSMKDPFFQRSVIYICEHDSDGTMGLRINEPVQISLKGM
LDQIELDNPSPIIFPQTLSQPVLNGGPVSDDRGFVLHSNKDNYLSSIQVT
DELSVTTSKDILATLGTEYQPYKYLVALGYSGWEGGQLEKELSENTWLTL
EADPSVIFDTPIPDRWRKALQLLGINPANLSSEIGHA
>VF0463 transcriptional activator HlyU
MDLQMMEDNAPQAVTLLKAMANERRLFILCLLLDGELSVGQIAEKLELSQ
SALSQHLGWLRRDELVSTRKESQTVFYSLNSQEVRSMIQLLHDLYCQK
>VF1086 hypothetical protein
MHKIIIANLVLEPESRTLTNQFGHKVMLRPLPYEVFRLLLDQQGKSVSRD
QLFNVCWEGMVVTDQALTNVISNLRRNLVQLKAENVTIKTVSKIGYLLAI
EQPITIVENTNEIAPLKKQSEPSSVANKIKKKEAFNRKTADAILKQLLTK
PSVKSVSCCFFLVAMIIVGVVYQRYISIPHFLVSNNYEHFSVNNTDFYLL
NKTKEKTDIEKIKSGIESLNLAECNANVYIRMYDSVYEDDTYSLKGYIEA
KNNNRNGNYSLSQFSYDDLPNIIGEALKRAKLVCD
>VF0476 transcription elongation factor GreA
MDKVPMTVRGEKLLRDELEVLLKRRPLISKAIGEARELGDLKENAEYHAA
REEQGICEAQIRDIEYKLSVAQVIDVTKMTNTGKVIFGTTVTLIDVNTDE
EVKYQIVADDEANIKEGRISVNSPIARGLIGKMEGDEVNIQTPGGTKEFE
IDAVDYI
>VF0977 acetyltransferase
MFEVKNVAYINKEKEEIRSIRDSVFIQEQEIDPEIEFDGLDSSAVHALVY
CDGEAVGTGRILSDGHIGRIAILKAYRSKGLGSKIVLSLIEEAVSQNYER
VYLGSQKHAIQFYEKLGFRPYGEEFIEADIPHLSMEKMIK
>VF1834 RNA polymerase sigma factor flagellar operon FliA
MSDGLTYDHKGNVNSQKAFLERYSDLVKRIAHHLMARLPASVLVDDLIQA
GMIGLLEAQQNYDGSKGASFETYAGIRIRGSMLDEIRRGDWVPRSVHKNS
RMINSAIRELEAKLSRDPTDKEIADYLELPLDQYYQILNDVNCGKLVGME
DLGVSDDVIATEEQADDNLPFQGVADEHFRVALVEAIKTLPEREALVLSL
YYDEELNLKEIGAVIGVSESRVSQIHSQSMQRLRAKLSSWTVE
>VF1443 virulence gene repressor RsaL
MSSIADDIIKSLEQAVEIKKGNLEGNVTRYEIADVKAIREQLHVTQKELA
MAIDVSVDTVKSWEQGRRNPTGLASKVLNLLSKEPELYSKFSD
>VF1979 transcriptional regulators, LysR family
MAKDLFATLDLNLLRTFLILSQELNMRKASERLFVSQPAISQALQKLRNH
FNDELFIKVRHGLKPTPFAEELAENIQPYLDGLSSVLNASQEFQPENLNK
TLKIALAPQVLTCLSGALFHEVREKAPNVDLQLVNWSESTFDDLSKGKLD
IAISYEYDKFPKELLSKSLITITGCVIVRKDHPIEKMIATPYDFEGYELA
SLIIPGWNDNKSLASELLTKMNIEHKIGFRSELPMALVDVVQHTDMYFPS
TSLFPIHQYSGLRRIDLSLDDVPLNYPIYSYFHQRHKKNALHAWVNQLIT
NLLSEANIK
>VF1713 ATP-dependent helicase, DinG family
MIAKIFSSSGALGKAIPGFQPRQPQLDMAHAVHDAIKNGTQLVVEAGTGT
GKTFAYLAPALVSGKKTIISTGSKNLQEQLFHRDLPLMVSSLGFYGQVAL
LKGRSNYLCPERLNRQLIESHTPQADPELLTQLVKVRTWSSETKTGDLGD
CEAIAEDSPIIPSITSTNDNCLGKECPSFEECFVVKARKKALDADVVVVN
HHLFLADLAIKETGFGELIPEADIFIFDEAHQLPDIASQYFGQSLSSRQL
TELAKDIEIGYRTEARDMRQLQKVAERLAGAAMDLRIILGDTSFRGNWRE
AIKSQAVQREILRINDAFELAYDVLKLALGRSQLLDAAFERCTLLKNRLE
RVCDTTISGYSYWYECTPRHFSLHITPLSVADKFKEQVAEKEGAWIFTSA
TLAVNDDFSHFTQRLGLEPTKQFSLPSPFDYQSQALLCVPRFLPEPNSYG
VAPKLVELLEPVIKQNQGRCFFLCTSHQMMRDLAELFRQTLDLPVLVQGE
TTKQKLLTEFMELGNALLVATGAFWEGIDVRGDALSCVIIDKLPFTAPDD
PLLKARIEDCQLSGGDAFSQVQIPDAVITLKQGVGRLIRDTKDKGVLVIC
DNRLVTRPYGSTFLQSLPPIPRTRDLKKVSEFLAQTNQTEVEQVEQKAIL
EN
>VF1722 transcriptional activator protein MetR
MIELKHLKTLTTLRDTGSLTATANALHLTQSALSHQLKDFETRLGSSVFL
RKTRPVKFTSEGEILLKLADDLLPKLAKAEYEIASLKEDLHGRLHMAIEC
HSCFQWLMPAIKEYQISWPEVELDFSSGFGFEPLPALVNGDLDLVITSDI
QPRSEVHYEPLFDFEMRLIMATNHPLANKDSIEPKDLLDQTMLTYPVQKQ
RLDVVKHFLSPNHVEPAKWKQAENTLMLVQMVSAGLGVAALPNWAISEFS
RQGLIESKPLGKGLWRRLFAAVRDSEHDKKYLQAFFSTAKQQSQSHLVGI
KMT
>VF1767 cold shock protein
MATGTVKWFNNAKGFGFICPEGEDGDIFAHYSTIEMEGYRTLKAGQAVTY
EIHEGPKGFHASEIKLLEGENAK
>VF1573 DNA transformation protein TfoX
MDKPVLKDSLRLLSSLGKITSRSMFGGFGIFIDDTMFALVVQDKLHLRAS
DETINLFKEQGFEPYVYKKRGFPVVTKYFAISPECWDEPDSILIQAVVAL
DVAKKDKEKQKSAGPSRIKDLPNLRLATERMLKKAGITTVEELKNTGSVN
AYKAIQQTHSSSVSDELLWSLEGAIKGMHWSVISAETRNELRKQL
>VF0150 hypothetical protein
MNVFLVTSPFQYICAIEAKFHYKSKNNILILIEQNSHIGKKQMSSLIKNE
DWDYIFTFPRSNRTFITPKIIKKIKQISSNKLDTLFYSEYNAWRSKLIIK
NLDFQKHVFFDDGTMTYFDYYDYIEPKASFYRPRFLQDIQLRLQGITPIS
KLDFFDNTEIFSIFEFKNCVITYTENKLNVLKKRINRLNNTSQFEYDVFI
GQGSVDEKNRISLKEYITLIKSVLSESKSYLIYIPHRTEATHVTESIKKI
NGVIFHQPNYPIEVELVENNITPLTITGLSSTALYTLSKIYPNSKIKLVD
QQSISKGERDKRIQLYLNEYFDKIK
>VF0114 transcriptional regulatory protein OmpR
MQENHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFH
LMVLDLMLPGEDGLSICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGAD
DYLPKPFNPRELLARIRAVLRRQVIEAPGAPSAEDKMIEFGEFRLNLGTR
EMFRNEEPMPLTSGEFAVLKSLVTNMREPMSRDKLMNMARGREYSAMERS
IDVQISRLRRMIEEDPSRPRYIQTVWGLGYVFVPDGAEA
>VF1720 maltose regulon regulatory protein MalI
MINKKANIKDVAERAGVSVTTVSMVLSEKGRISSDTIDKVNQAVQDLGYI
KNRTASNLRSQKSTLIGLILRDISDPYYAEVAAGISEVLEEKGYMLFLAQ
SGTSQEKFDQCLATMIAQDIGGIIFCPIRDSELPNLDKVKNVGLPIVCVA
RAKINQPIDFVGPDNMQAAKIATEYLIKQGHRQIAYVGGQSDSLSRAERL
GGYCSTLMQFGLPFKSEWVVECDKSQTASAEAVSQLINKNPKITAILCHY
SSTAFGAVYGVNRANRSVGKDNYIGQQVAIIGFDDVPEAELIQPSLTFVS
SPIRDIGRQAGHRLINQINDKGSVPQSLILSPELIARNSA
>VF1449 transcriptional regulator, LacI family
MATIKDVAKHASVSTSTVSHVLNKTRFVSEDISERVMAAVAELNYAPSAL
ARSLKVNHTKTFGMLVTTSTNPFFGEVVKGVERRCYEKGYNLILCNTEGD
AERVHSSLDTLLQKRVDGLLLMCTEIENQVLELFSRYQPVPTVVMDWGLI
DFPSDKIQDNSHHGGYLATKHLIEQGHTEIGCLTGPLNKLQAQQRLSGFV
QAMEESGLEINKNWIASGNFECEGGEAAFNEIHAKGKLPTALFVCNDMMA
MGMINCASKKGISVPNDISIVGYDDIKMAKYITPSLTTIHQPKHRLGQQA
VDSLLEKIATKSETNRVFQLEPTLMVRDSVKTLSN
>VF2177 LitR, transcriptional regulator
MDTIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADIAEIAQVSV
ATVFNYFPTREDLVDDVLNKVENEFHQFINNSISLDLDVRSNLNTLLLNI
IDSVQTGNKWIKVWFEWSTSTRDEVWPLFLSTHSNTNQVIKTMFEEGIER
NEVCNDHTPENLTKMLHGICYSVFIQANRNSSSEEMEETANCFLNMLCIY
K
>VF1378 transcriptional regulators, LysR family
MLNLKQLETFVWIAHLGSFRQAAKHLCTTQPAISTRIANLEETLNTALFY
RDTGSISLTAKGRELLPLAEKLLSNADQLQVLANSAEAISGILRIGVSET
VVHTWLPHYLALIHQNLPHLEVELIVDATINLRKELLARNIDIAILLGVV
DEPNVVSQAICNYDLHWVASPALQQTQKNKVLNFAQWPLITYARNTSPYY
EIERYFNTHNNQATRFYSASSLSASIRLAESGIGIAILPKEVIHTSLQNN
TLEIIEADWSPSPLQFSVAYIDTPVNLMTMESVKLTFEAVKQYKNVN
>VF0056 ATP-dependent RNA helicase RhlB
MKKTHITEQNFADLGLQPQVIDGLNAKGFIKCTPIQAKALPVLLAGQDIA
GQAQTGTGKTLAFLTATFNHL
>VF2275 transcriptional repressor CytR
MATMKDVALSAGVSTATVSRALMTPEKVSLSTRKRVEDAVLETGYSPTTL
TRTLRRNESKTIVTIVPDICDPYFSDIIRGIEDAAVENGYVILVGDSSQQ
KKREHSFVNLVYTKQVDGMVLLGSDLPFNVSRQEQKNLPPLVMACEYAPE
LELPTVHIDNLTAAYEAVNYLTKLGHKNIAELSGPESSALCQFRHQGYQQ
ALRRAGITMNASYVQYGDFTFEAGAKAITQLLSLSTPPTAVFCHNDIMAI
GAIQKAKQMGFRVPQDISIMGFDDIEFSQYCDPALTTISQPRYEIGRQSM
LMLLDLLKGHDVRSGSRLLESSLIVRESTASPKNK
>VF1439 putative ATP-dependent RNA helicase RhlE
MTTTTAPANFTELGLISPLLARLTELEYQQPTPIQAQAIPSVLAGRDLIA
GANTGSGKTATFALPLLQQIAELQSGKAQASKGNFVTGLVLVPTRELAKQ
VADSIKSYAVHFNGAIKTVSVFGGVSVNTQMLALRGGADILVATPGRLLD
LISSNAVKLDKVKTLVLDEADRMLSLGFTEELNELLALAPKQKQTLLFSA
TFPEEVQTLTQALLNNPVEIQLQSADASTVVQRVFTVNKGEKTSVLAHLI
QKNQWRQALIFVNAKNACNHLADKLAKRGIAAEVFHGDKGQGARTRVLEA
FKAGEIDVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAG
EVGLALSLIDYEDYHHFKIIEKKNKIRLEREQVEGFEVNEEITEALLASI
KPVAKPEGTGKKNKKKYKDNW
>VF0120 transcription accessory protein
MIINIIAKELNVRPQQVSAAVQLIDEGSTIPFIARYRKEVTDGLDDTQLR
TLDTRLTYLRELDDRRQSILKSIKEQDKLTPELEREILDADSKTRLEDLY
LPFKRKRRTKGQIAIEAGIEPLADLLWTQPENTPEDAAQSYIDEEKGFAD
TKAVLDGARAILMERMAEDANLLEKVRTYLTANAELVSKMVDGQEQAGEK
FKDYFDHHEALTKVPSHRALAMLRGRNEGFLQLSINADPTQEEGARGSYC
EIIIANHYGITLGSQPADLWRKQVISWTWRIKILMHMETELMGGLKERSE
NEAIDVFATNLKDLLMAAPAGLKTTLGLDPGLRTGTKVAVVDATGKVLAT
DTIYPNQPHNQIAKSAQIIEALIKQHNVDLIAIGNGTASRETDAFVGNLL
KDAGLSTAKIIVSEAGASVYSASELAAKEFPDLDVSIRGAVSIARRLQDP
LAELVKIDPKAIGVGQYQHDVSQSQLAKKLDAVIEDCVNAVGVDVNTASP
ALLTRVAGLSATIAQNIVDYRDENGRFENRTTLKKVARLGPKAFEQCAGF
LRVMNGKNPLDASAVHPEAYPVVKTIAEKNGKAIDAIIGNTEFLRSVAAN
DYISADFGLPTVTDIIKELDKPGRDPRPEFKTATFADGVNTVSDLELGMV
LEGVVSNVANFGAFVDIGVHQDGLVHISALSDTFVSDPREVVKAGDIVKV
KVMEVDVQRKRIALSMRLNDKPGEDNRPQRQSNKPQQRNERSQAPRQQRN
NDVGGGAMGGAFAAAFAKAKK
>VF2182 pyruvate dehydrogenase complex repressor
MTYQRIRQPKLSDVIEQELERLILEGILSPGQKLPAERELAKQFDVSRPS
VREAIQRLEAKHLLTRRQGGGTFVNKGLWQSFSEPLLDLLATHPETQFDL
LESRHALEGISAYYAALRGNEEDFKRIKESHRLIQQAQKNGDLEAEASAV
MHYLITVTESAHNVVLLHMVRSLEPLLEQNVLQNFTLLNRRESVVEKVRE
HRAEIVEAIVSGKPEEARLASHSHLAYIEETLLELTKEESRRECSLRRIQ
QNNDMN
>VF2254 RNA polymerase sigma factor RpoD
MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPEEIVDSEQVEDIIQMIND
MGIKVVETAPDADDMSLNDDDAVTDEDAAEAAAAALSSVESEIGRTTDPV
RMYMREMGTVELLTREGEIDIAKRIEEGINEVQCSVAEFPGAISYLLEQF
DKVQTEEIRLTDIISGFVDPNDDGSSAPTATHIGSELSESELDDEDDEDA
EGETEEEEDAGIDPELALEKFTELRTSYHNMQLAFEEFGRDDAKSREAIG
ELTDIFREFKLIPKQFDYLVKEMRDGMDRVRTQERLIMRMCVEYGKMPKK
SFIALFTGNESSDEWFNEIMASDKPYVERLQRYEEDIRRSIAKLDSIEKE
TGLPVENIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
RIPVHMIETINKLNRISRQMLQEMGREPLPEELAERMQMPEDKIRKVLKI
AKEPISMETPIGDDEDSHLGDFIEDNTLELPVDSATSTSLKFATNDVLAG
LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSEVLRSFLDE
>VF2259 transcriptional regulator
MSSLTLTDKVSKMIHQDILSGKLKPGQKLVVAELKERYNVGASPIREALV
QLSWNKYVKLEPQKGCWVASISLSELKELFESLRTIGQVLLAKAITNGNE
NWELNVLTSFHKLNKINLQDAKIEELREWENRYTDFHNSLLEGAQSPIMY
QFYQDISHQITRYRHLNNNPQVISETYAQYLEEHEIMMKLTLSRDSEQAI
KYLNNHYSKASDLISTYFSA
>VF2420 transcription antitermination protein NusG
MFEAGEVVRVTEGPFADFNGTVEEVDYEKSRLKVSVSIFGRATPVELEFS
QVEKN
>VF2391 DNA-binding protein Fis
MLHCNSLNLKAISTTLHHNKRRAKQNMFDQSMTSEALTVTTVTAQDQITQ
KPLRDSVKASLKNYLGQLNGQEVNDLYELVLAEVEQPLLDMIMQHTRGNQ
TKAANMMGINRGTLRKKLKKYGMN
>VF0021 transcriptional regulators, LysR family
MELEEVYRRDLNLLIALKVLLEENSVSQAAVRLNLSQSAMSRVLGRLRDL
LGDPLFTRQGQHLVPTQKALEINEQINLPLESLRQLLTPSDFTPMHCDQH
FLIATTDYAMQTILPYALPKIYEQAPNISLEFAPLNHENLFKQLSTEKVD
MAICRPIGSVLPLKQEVLGQVGVLCLLSKNHPLSGSILTLDDYLSLPHAM
IAISDGVKALIDAALSGQRERRQVLRAYHLEAALAIVDKMPLVITVPADL
AYLVAERYDLVIKPLPFEFTPFDYSLIWHSRCDTSPAQTWLRRVVKEECG
KLIEKRIEDIGFA
>VF1074 transcriptional regulator, AraC family
MDVMLANSNPHFLRSSILPFELRYSSNSSACYKKHTHQEFSIGVVDSGIS
EYFNQNKKQTISPGSTVIVNPEEVHSCNPQKGTNWSYKMLYVEPEWIAKL
QSQILNDNNNTFRPFQITHTDCPFIYRGFQSLSHTLIEDESKIKVEQTAI
NFFSELILKDTNNPSLDVISKKAIDCAYQYISDNFDKNISISEIAEVSGL
SEFYLIHSFRKQYGITPHAYQIVMRINKAKALLKNGENIASIATDLGFTD
QSHFHRNFKSVVAATPKQYKQSL
>VF0649 transcriptional regulators, LysR family
MIDWEGVTEFVAVAEAQSFTGAARALDTSVAQISRKVAALEDRLSIKLLI
RTTRKVSVTEAGQTYYQHCRHLVEGLKQADRAITELNATPQGRLKITSSV
TYGEQLIAPLLSDFMLMYPQLELELVLSNQTLDLVEQDFDLAIRLGRLTD
STMMAKRLSSRQVRVCASPSYIEKHGEPHTLSELSQHNCLVGSLPIWRFI
ENKKEKSVRVKGSVHCNSGAALTNAALKGLGIVQLPDFYVQESMDKGELV
EILVPYREPKEGIWAVYPNNRHLSTKVRLLVEFLAQELAE
>VF1475 transcriptional regulators, LysR family
MHTLEQVSAFVAVYEHGSYSSAARELKKSRTTVREHVVTYEDLLGYSLFV
IEGRKAIPTEKAEQLYHRAKLVEKQNRSLFVQSQALYDSNVHTITIYYDV
ITPLSLITHIENRVMDYNSDIIINWKHRTRQEAMDKLQEGECDIAIMPYR
GQLFAEKEVTWKAIKPIQVGCYASVNSPLALIDDLRLENLMLETQYVTEN
FATLKLNFASIQVSPKMHTVSNNDLLCELVKQHGWTIMPRHYMTPYVERG
ELVDLNLKELGNNLSFGLNAFYCYGKPDAEVFGFILEWIEEWTEALERC
>VF2561 cold shock protein
MSKSTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIATEGFKTLKEGQAV
TFTVEQGQKGPQAADVTPA
>VF0616 Rrf2 family protein
MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLR
KAGLVASVRGPGGGYRLGLKAEQIAVGMVISAVDESVDATKCHGKEGCQG
GTRCLTHTLWRDLSSRISTFLDGITLGELMQDNEVQQISDRQNVDLAITN
GLTTNSKLTNSVGVNVRS
>VF1881 negative regulator of flagellin synthesis FlgM
MTSIDQLRASQAMASLRNQARVDSGDKAPETQAPALSAKSDAVSLSNQGK
EIGQMHQQLATEPSFNEDKVAAIKAAIANGSYTVDPERLADNMIKFEDEL
AGL
>VF1386 acetyltransferase, GNAT family
MESKMKIEIHQGAVADVLIVDQQIPEFDNRNTHEKLTQRLSDKKHLILVA
VSEGIPVAYKMGYQLSDSEFYSWLGGVVPSARKQGIATQLRVTQEEWAKK
QGYEAISVKSMNRYPAMLQLLISSGYHISGYEDEGSSDNSKIKFLKKL
>VF0990 serine/threonine protein kinase
MTDINIDHFIADDSDELNTESTRKEANTLPLPKVINERYKIKRVLGVGGM
GIVYQVDDLLLKSIGLNNYHMAIKVLNSEASHFADADLLLVNEYIQSSHL
HHPNIVSVQHLAVCNESQRGFLIMPVIKGELLSLLLDSPFENIPIDARLK
YAYSLINCIHHCHKRGVIHGDLKPGNILISDSNELFLFDFSISRNLDPEK
NKFTINFNQVHAWSGDYAAPEVLQGNAPTIKSDLYSVAILLYKLLLRVHP
YQQNEEGPKPRTKEEQKLHHILLQAMRPVPSERQLNFKALLNIFKEMKNH
QIDNHTPIMKKVTSIFSKK
>VF2438 transcriptional repressor of FabB
MYPEFEVDDLNAVSEVKRPVSAKGVRAQQKERTRRTIIDAAFCLLCAERG
FTSLSLREVTREAGIAPTSFYRHFKDMDELGLTLVDEGGLILRQLMRQAR
QRIVVEGSVIRTSVETFMEFIEGSPNVFRLLLRERSGTSPAFRAAVAREI
QHFVAELTEYLVATTGVAREEALVQAEASVTLVFSSGAEALDLDSASRTE
LSERLIFQLRMLSKGAYWYRKENEK
>VF1050 Protein YciN
MSDKKSISEADLLLIANQIIQDHENYLEGMRATSVEEKDEVLVFKGEYFL
SDQGLPTEKTTAVFNMFKYLAHHLSKEFTVK
>VF0664 transcriptional regulator, RpiR family
MSNHNIQIKAGNIIDTIGSLYNSLTPSSKRIADYVMSNATQVSKHSIAEL
SQIVNAGDATIIRFCRTLGFKGYQDFKMELAIEVSNLQGREKEIFDTDVT
AEDNAEVIGHKLQSTIESVLAETMNLLNFQSLESVAEALKDAKAIYFFGV
GSSGLTAESAKHKFMRIGLNVDAFTNNHFMYIKSSLMQPGDFAVGLSHSG
NSVETTKALRLAKESGATTIAITHNPRSDITKYSDYVLVNGNRQGQLQGD
SIGTKISQLFVLDLIYTLLVKRDISGAKANKLKTTEALSNQS
>VF2087 ribonuclease III
MNSSLQRLEKKIGYQFKDESFLKLALTHRSANGTHNERLEFLGDSILSFV
VADDLYHRFPKVDEGDMSRMRATLVRGHTLAELGREFQLGDYLYLGPGEL
KSGGFRRDSILADAVEAIIGAIYLDSDTETVRGIILSWYNTRLESIEPGV
SQKDPKTRLQEYLQGRRKPLPTYTVTKIKGEAHNQEFTIECIVAGLDKPV
IGKGSSRRKAEQSAADIALGQLN
>VF0104 GTP pyrophosphokinase
MDLFDSLKDVAKDYLPEPHIEALRRSYLVAKEAHEGQTRSSGEPYIIHPV
AVARILAEMKLDHKTLMAALLHDVIEDTAVSKEELAEQFGDTVAELVDGV
SKLDKLKFRDKKEAQAENFRKMVMAMVQDIRVILIKLADRTHNMRTLGAL
RPDKRRRIARETLEIFSPLAHRLGIHNIKTELEELGFEALYPNRYRVLKE
VVKSARGNRKEMIQKIHSEIEGRIAEAGITGRVIGREKNLFAIYNKMKNK
EQRFHTIMDIYAFRVITDNVDTCYRALGQVHSIYKPRPGRIKDYIAVPKA
NGYQSLHTSMVGPHGVPVEVQIRTEDMEQMANKGVAAHWSYKEGDNSSTT
AQIRAQRWMQSLLELQQSAGSSFEFIENVKSDLFPNEIYVFTPKGRIFEL
PVGATAVDFAYAVHSDVGNSCVGSRVNRQPYPLSKPLKNGQTVEIISAPG
ARPNAAWLNYVVTSKARTKIRQVLKTMRREDSVVLGRRLLNHALGHNVSL
DDISQENIDHVLSDLKLAELDDLLAAIGLGELMSIVIARRLLGSADELTE
QTSNIETTTGKKLPIRGADGILLTFANCCRPIPGDHIIAHVSPGRGLVVH
MEECANVRGYQKELDKYMGVEWADEFDQEFDTALDIDIQNHQGALADLAN
VIAGTGSNIRGISTEEKDGRLYTVTIELTVKDRKHLAEIMRRIRVMPHAL
KVRRHKN
>VF1510 transcriptional regulator
MFEFKWLEDFMSLIELGNFSAAAKSRYVTQSAFSRRIQALELWVGVPLFD
RSSYPIGLTEHGNKFVPYAENLLNQIKVTKEDFSLASLKTDNTVRIVCLH
SFAINLLPNLLAQFNNQLSHLNISINPSVQGIDNHFQTLLDDSSDLLFTY
NMIGMRPSISLENKLEKHILFKEKIIPVISPDLLKNHEDNTPWPLLSYSE
HTFLYKVVNQLTKSISVPFSQVFETTLSESLIEMAINGIGVAWVPMHAVE
KELIKGTLVTAFTEYSDWTIQLDVVCYHSKANSRPAVLQFLEEIHSLKN
>VF1988 phosphate regulon transcriptional regulatory protein PhoB
MARRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLI
LLDWMLPGGSGINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGAD
DYITKPFSPKELMARLKAVIRRVSPTSIEELIDVQGLKLDPVSHRVTAND
KPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVWGTNVYVEDRTVDVHIR
RLRKALEVEGHDRLVQTVRGAGYRFSVQAS
>VF0081 transcriptional regulator, AsnC family
MNQTSKIDDLDRDILQALMNDARTPYAELAKRFDVSPATIHVRIEKMKAA
NIIEGTEVVVNPKTLGYDVCCFIGINLYAARDYHSALAKLDALEEVVEAY
YTTGAYNIFVKLMCKSIEELQYVLIDKLQAIDEVQSTETLISLQNPISRN
VKP
>VF1344 acetyltransferase
MIVIKTYQEENASALWDVFFNTVRKVNRKDYSNEQVTAWAPESFDTDVWK
NKMQSLNPFIAEIDGVIVGYSDLQDDGLIDHFFCHYQHQGKGVGSALMTH
ILELAKERKLPRVYSHVSITAKPFYERFGFTVVKPQCIDVRGEQLINYVM
ERQIL
>VF1260 transcriptional regulator, TetR family
MKEEKRVNALKKTIELCALHGFHGTSMDKITAATGLSKATIYKYFQSKEN
LIANALELFSQQSLSHVQALFENTELTLEEKIALRFEGLAGCIDIESFNG
CYFQLAYSEYSSEDQGITEVSAQYKQRTQELLIELFKRHDIKDAELKAKK
AGLVYNGLLASLQLTKDAELIELAHQMFLGIIFKSE
>VF1385 hypothetical protein
MDKIIFQRVTDCEYPSLFSIYKKYLKPTIEEALGWDELYQQQRFNQSYQK
EWFDWIMYNGERLGIICTKPDAIRSTIHIHLLIVFEKYQNKGVGTAVMKC
YQKHYSDAVTKSCLSAFKVNKSVINFYLSLGYQIVREDEHFVEMERSLCF
SGYMGES
>VF1321 transcriptional regulators, LysR family
MLKQAKQMIVFNALTQQQSFTKAAQLLDISRTQVSQQIQLLEERLGVQLV
QRTTRSFSLTEAGQTFAVHCANIADEINEAENELLTNIDNLQGKLRVGIA
QSFATNHILPYLSELHHAYPQLNIEITLFDHKIDVIAEQLDLWIGVMDSP
PEGFVARHLIDCHFVLVASPLYLAKQGIPYHPYDLKKHNCLTYISRERKD
DVWGFHKEDENLQIKVSGNYRIDSADAIRNATIAGNGIGYIATYLLSDEL
QAGKLVQLLPDWELNQSMPLYAVYPRRKFLPKKVHVFMEFVRQHINETQI
GKI
>VF1787 transcriptional regulator, AraC family
MKANLERVPIRIGSSWRYKKIDGVEKNCHWHFHNEYELVLFRKNNAKGMV
GHFERVIEKNTLWLIPPKMPHAIELLEEKELQCESHIIWLPKEWVENMIF
SCTELRRMGELFKRSSNGLCFSTSTAEKVYQLIEKLFKDSILDDLGYLIQ
ILGCLCSDKETRPLQLFSKQEASDKEGKEKIDLVCQYIDDNYQNSITLLN
VAEHLCTSESTIHRLFQSHFGESFSQYLKKLRLNHAANLLTHSRLPIGIV
AEQVGYRNQTNFNRLFKDYKQLTPNQYRKKFSSL
>VF1148 two-component response regulator
MLKAIVIDDELFAREELIEQLNEIGHIDIIAECGNAIDGLKQINILKPDV
VFLDIQMPRITGMELISMLDPETMPNIVFVTAYDEFAVKAFEDNAFDYLL
KPIEPARLQKTIKRLIQADKKQDLTPLSQPDIDLIPCSGHNRILLLPSNE
IEVASIQASGVELLSKTEKACTQLTLKVLEEKTPLIRCHRQFLINPHFIR
EIKLHENGTSEIVTQNGHIAQVSRRYLKEIKERLGIHH
>VF2496 serine/threonine protein kinase
MLLGTSSTQIFYHLLDLDDEQQQKVLDTLKENQPEIHQEITALLGSSPSE
HFSDLLGFHAQQTCHFDWDLSNQTIDKYQLRDELGRGGMGVVYSAHRANG
TFEQELAIKFIQPSFNNLLDKRALFEEAQLLARLNHPYIAKVFDGGEHQN
LVYVVMEKVIGSTLNDFLVMHELSKAQKLHLFSQVCKALEHAHQHNVLHA
DLKPENILIDKQHSPKLIDFNLTQKVKESTIEPQQGVLAFSEQFASPEQK
SGGFLTQQSDIFSLGKILHLLFPVTNENDDIHCIQTKAMQESLDKRYRSV
LELRLDIEAVIASRPISLKQHRPCYTLTCLLKRKPIPSFLCALLMITGIA
FSSLLALKNHQLEQEKIVAENMMYEVTQLLFHSKGSSVSQASINSMLELT
RRRILSNPDLPAHIKQRMLLAMMTPIPTKQKLTTHHFTNNN
>VF0136 3-deoxy-D-manno-octulosonic acid kinase
MKIIRNKKQTIWYDDSILNDSPEQCCNPNYWQQQNRIIGSAQGRGTTWFI
ALEKMDAALRHYRRGGLFGKLIKDHYLFTSWEATRSHQEFQLLKVLRSAS
VNVPKPIAARATKRTFCYQADLLSEKIPNARDLVAILQEKPLSEEMYQKI
GNEIRKMHAVQVNHTDLNIHNILIDDNDKVWIIDFDKCYQQKGDDWKQSN
WDRLQRSFKKEVNKRQIHWSENEWSHLLSDHHTM
>VF0055 ATP-dependent RNA helicase RhlB
MAPTRELAIQIFNDAESLIASTGLKAALAYGGERYEKQQQVIEQGVDILI
GTTGRIIDFYKQGHIDFKMIQAVVLDEADRMFDLGFIKDIRFIFRRMPAP
TERLNMLFSATLSYRVQELAFEHMQEPEHVVVEPEQKTGHRIKEELFYPS
NDHKMALLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADKHRVGLLTGD
VPQKKRERILEEFTQGNVDILVATDVAARGLHIPQVTHVFNFDLPNEAED
YVHRIGRTGRAGASGNSISFACEEYAINLPAIEEYIEHSIPQSDYDASAL
LEDLPAPLRLQRRPQQNRRNNNGQRQGGNRKHTRPRQPRNTQS
>VF1490 cys regulon transcriptional activator
MKLQQLKYIVEVVNHSLNVSSTAESLYTSQPGISKQVRLLEDELGVQIFE
RSGKHLTRVTPSGEEIVKISREILSRVESIKSVAGEHTHPEKGTLNITTT
HTQARYALPDVIKGFKNRYPAVSLHMHQGTPSQMSDAIAKGTADFAIATE
ALHLYQDAIMLPCYHWNRSIVVTKDHPLAQLQQVTIEDLAAFELVTYVFG
FTGRSALDSAFNKAGLKPKIVFTATDADVIKTYVRLGIGVGVIASMAMDE
ERDSDLVAIDASHIFDASTTTIGFKRGSFLKSYMFDFMERFAPHLTRPIV
EQATMLKNNHEIEEMFKDINLPVR
>VF2408 regulatory protein CsgD
MSIYYLSSDPTLYSSLLIDLLEKTSGRAIISLNCDELVNKGKIDDDILVI
LDIKKQTDKKYKNYIDTINQNKLKVREILFNITDENIKKNIMKYPNVVGI
FYEKDNMDIISYGVKKIIEGEMWLSRKIISELIFTYREKQNAILSTSISL
TTRESEILRLLASGASNLDIANSLFVSENTVKTHLYNVFKKLNVKNRLQA
MMWAKGYDFEGNNR
>VF1530 transcriptional regulator, GntR family
MQYLTIKDAIEEQIDTGMFEAGQKLPSERTLAETFSTTRITLREALNHLA
LSGKIYKEERRGWFVSTAKLIFNPMQCIDIAEACKEQKRNCRIEALSSHR
LLATKEMLTVLKLSPFSYVKQQVSLIHIDGRRVAVQYRYIPEEMTTLLSH
DEQTDVLTQLLNSFEYDSEKHEIEVGIIPASQLESDALNLSSGSMLLSIN
QVACNKSQTPFLLQTIRCCHDAINLKISQTA
>VF1974 hydrogen peroxide-inducible genes activator
MNKWPSLKQLHYFITLHETRHFGEAAEKCFVSQSTLSKGIQNLEELIGCT
LYERDKKTLVFTPVGERVVEQGRELLAKGQDLIELGSLCQGDSMQGQLRV
GCIPTIAPFLLCDLVQEVNEKYPQLTLLLREDTTTNLLAALRQGQLDVLI
LALPVDIAGMESLVVGQDPFKMVISKDQASSISTPIRYDDLPDEFVFLLE
KEHCLTEHAVSACKLTKREKINPFTATSLHTLVQMVANGLGTTFIPQMAI
KHGLLDNQNLVVVEPPGQEASRDIGLVWRPSSSRLQAFHQLADIVEDIL
>VF1909 nitrate/nitrite response regulator protein NarP
MWNVVIVDDHPLMRRGIGQLLSFDEEFTLTGEASNGTDAVALISQDEPDL
VLLDLNMKGMSGLDTLHALRNEGVTCPIVILTVSDNKQDIKTLIKAGADG
YLLKDSEPDELIALLKEAMKGGKAYSEQVKTCLEEDAQGDDKLSQLTARE
LEILQHVAKGMRNKQVADKLFISEATVKVHMKSLLKKLNVKSRVAATLLY
LDS
>VF0891 transcriptional regulator, RpiR family
MNTIEKIQNNLDNFSKSERKVAEVIMASPQTAIHSSIATLAKMADVSEPT
VNRFCRRLDTKGFPDFKLHLAQSLANGTPYVNRNVEENDGPDAYTHKIFE
STMACLDVAKNSLDPMQVNRAVDLLTQAKKISFFGLGASASVAHDAMNKF
FRFNIPIACFDDIVMQRMSCINSTENDVVVLISHTGRTKSLVEIAELAKS
NGATVIAITAKDSPLEKMASLAICLDVPEDTDVYMPMASRVVQMTVIDVL
ATGFTLRRGVGFRDNLKRVKEALKDSRYGKDERYQ
>VF2080 GTP pyrophosphokinase
MVAVRGAHLKENETFELAEWIDSLEQDKPTSKKLTEVYQHCQELVASHEN
GQLLLWRGREMIEILITLSMDKATLVAAQLFPLVSSGLLDKETLTEHYSK
EIEKLIEGVEEMDSIGQLNATVGPESASNQVDNIRRMLLAMVDDFRCVII
KLAERICNLREVKNEPDEVRRAAAKECNNIYAPLANRLGIGQLKWEIEDY
SFRYQQPDTYKKIAKQLSERRIVREQYIHDFVTDLSDEMKVCNINAEVSG
RPKHIYSIWRKMQKKSLAFDELFDVRAVRIIADKLQDCYAALGVVHTKFK
HLPSEFDDYVANPKPNGYQSIHTVVLGPEGKTIEIQIRTKDMHEDSELGV
AAHWKYKEGPGSNSRSGYDEKITWLRKLLDWQEEMSDSGEMLDELRSQVF
DDRVYAFTPRGDVVDLPMGATPLDFAYHIHSEVGHRCIGAKVGGRIVPFT
HQLSMGDQVEIITQKEPNPSRDWLNPTLGFVNSSRARAKINAWFRKQSRE
KNLDAGKEILEVELAKIGGTLKDAERYALKRFNVNSTDELFAGIGSGDLR
INQIVNHINALVNKPTAEQEDQKALEQLQESEAKAQAQAQAQSKQRKDAV
VVEGVDNLMTHLARCCQPIPGDPIAGYITQGRGISVHRSDCDQLNELRHH
ASERIIDTVWGSGFVGSYILTLRITAMDRTGLLKDLTTLFANEKVKVSGM
KSRNDYKKQLTIMDFDLEVFNADIVGRLITRVEQVKDVMEAIRLS
>VF1113 transcriptional regulator, RpiR family
MNILEKIQNQRSNLSSNGIKILDFILDDPASISSYSSQALAAKVGVSQSS
IVKLTQRLGFKGFTAFKLAIIEDLGRKQAILEPERPIHNKINSDDSSLTI
AQKLVQEKTHALIATTNAINFSEFELVTTLLNQAQRIQIVGIGGSALTAK
DLAFKLLKIGMTALTEQDSHVQIATANTLTKQDVQIVISYSGSRKEILMA
AQTAMDKGATVIALTSTKKSPLRKLANFCIDTIADERQFRSSSISSRTAQ
NVITDLLFMTLLQIKSDKAKLLIDEISSTMNRI
>VF2315 Rrf2 family protein
MQLTNFTDFGLRALIYLGSLPEGELTSITVVTETFDVSRNHMVKIINKLG
QEGYVKTIRGKNGGICLGKPADQIIIGDVIRAIEPLQVVNCAPEFCHITP
ACRLKGALAKAKQAFLDELDKHTIQDMLTDNSELLILLKRI
>VF0296 hypothetical protein
MKQSGRPKGESEVREKLIFHARELFISMPYNKVSTRLIATNANVNIAMIR
YYFGNKEGLFEAMFKETIAPVTQQFQRLLKDDTEQDLVEFMRAYYKAMIK
VPAFPKLILRIMDAESEQQAALQQIIIGILQPMQNKLFDPQKSKALFKNG
VDPIKARLSLMSLMIFPFLAPKKMLELHNIELNETFLMELLEHNIRLLGE
GLLKNKRDTDNENK