Gene list
Applied filters:
COG category: Transcription
Gene type: CDS
Genomic element: chromosome
Number of genes found: 81
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View as list | ||||
# Synechococcus sp. WH 8102, WH8102 >SYNW1385 possible DNA-binding response regulator MELRLDSRTTQEAIAQAAELLEHRRLVLVFGDRLTLSALAIAEPIKPSLV GAATTEDEGLELVLRTQPDLLICSSDLETGYGPVLLKRVKAELPTCQLLI VLERETKALVREALDAFADGVIFKSSLGTGRGDLIGALHTLADGGVYYPA EIRRLAAAAPQPDLPPLVEELTQRELDVAAAVARGLKSNAIADLLGISLE TVKTHVGNAMDKLGARDRTQMAVTALLYGLIDPLD >SYNW1838 similar to secreted protein MPB70 precursor MAQQSRKPPERRVSSTARLQLMDLTTLRAVLSDLRPKLLPSRFEKAQQPD PATLQLGFRSLQGMLWLELSWQADAPRLVQIPPAPRQGAGSTLSQQIQHS LRQMALIELVQTGFERVVEFRMAPRPGDAVQRVLVLELMGRHSNLLLLGE QRQVVALGRQVRDHQSRVRPIGTGDAYLPPPPLQGQAPSSTEGFERWRER LRLLPLPLRKALPQAYQGISPPLARQLAGERLATSVEQLEQSAWCELHRH WQAWLACLETEQFRLFLDEEGYRVWSSHPDQSGDAEGNEGNLALALGHWY RARIDQRDLQRACDELRQRLSRWRSKEDLALEDQRRRLAACADSTDLQQQ ADALLCLPAPNRDEVDLAQKLYRRARKLRRSSTVLEERILHHDSRLQLIN GSEAFIDDLQAAAWQPMAARLEALSDLRRELDELLNPVGRQERKQRQQQG TPQPLELTSPSGLLLQVGRNHRQNDWISLRQARSGDLWFHAQECPGSHVV LKSSAGLADDDDLQLACDLASYFSRARGNVRVAIVMVPTDHLQRIAGAGP GTVRHSGGEVRWGDPLRAETRLSSLEASSLAIRKG >SYNW2493 conserved hypothetical protein MPLRPIGSADHPLLREIYADAIESQAPGLYSSDQVRAWAALAWLPGILDR TFLEGQGWISGHDAAFAIREPRDRLSLLYCRGRACRQGHGRALLDQIEAD ARHEGVERLRTEASQLSRPLLERCGWRVQAPETISIGGVPFKRYRMDKWL LQDRS >SYNW0126 two-component response regulator MSGDVLSQPKATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELF HSESPDLVVLDVMLPKLDGFAVCRRLRAESCVPIIFLSAVDAISEKVAGL DLGADDYLPKPFSPKELEARISTILRRVGRGAAEIESRELPTGQGVMCIG ELVVDTNRRQVTRGAERINLTYTEFSLLELLFREPGEVVPRAEILEQLWG YPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYCSQRLGETA ATA >SYNW2289 two-component response regulator MTDTPLPSTDEQEAPPPVPRLLLVDDEPGLRTAVQAYLEDEGFEVTTAVD GEEGFSKAQQMLPDVVITDVMMPRLDGYGLLKKLRADERLGGTPVIFLTA KGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQQRLLQEAARFA DTDMGQMAKQITEIRSLLAQAEALPSKEPVVHSFTPREASVLQLVAEGLM NKEIARQLETSIRNVEKYVSRLFNKTGTSSRTELVRYALEHRLVT >SYNW1592 Possible AraC-type regulatory protein MVCKQRLQRLAVATNEQRALDRINSVNSAAVTPELFQRLVELTKPQHHDP IQAELIEAELLELLSNRRLSQINSGELSHRAGLMKDLIAWGQGNPTQVIS LEDITTTIFASRSSIVHSCRASFGMGPMTLLKQIRLGQVQAVLLNPQRQA SMGFITVQAVATHFGFSSRNHFARDYRQLFGEAPSETLQRSATPGIRSHP VSVAHRPQMAMARR >SYNW2173 conserved hypothetical protein MTMAGHAAALYERIRSNPEQTQALFRQALQDPSGAMASICQFGEDQGLPV TPDEVRQHLASLDDEASPRWVVKARGGL >SYNW0689 conserved hypothetical protein MPLHTISPYSFDVGSSGSVSAIQPRQWQTQLIQLLRRRLDGKATGEKDVL VSAGPGAGKTLGALLAFRSMRQEQLLQHFLVFCHRTSILEQWQRSAARVG LELVSWPCEQKTLSQADGLLLTYQSASRQPQQLATALDPWPASTLIAIAD EAHHLGLDPEEPGAAAWSQTFEEQTSQCRLRLGLTGTPFRADNLGFCAAR RIRTIQNGELVEQIQPDLCVEPRELIAAGDVRPLEFHFQDGWVEHSQEAR PDRDVSPLSQEQRESWRARNLRRAIRLADSSCIGQQVILQAQRRLARVRQ QQPNAAGLVIARDIEHASAIATLLEDDGDRVDLVHSQDPEAAARLDGFQA GAADWLVSIDMCAEGFDAPRLRVVAYLTTVVTRSRFLQGITRAVRMTPEL AEQEPIPRNPSYVVAPADPLLMGYARSWSVAEPYVLTSQDSDQAPLSGFP GHGRGPSLPLEAVNDGAGAMIRLKTPQLPSFLQR >SYNW0964 possible LytR-membrane bound transcriptional regulator MTPTQPKRLMPWLGRHPLRTVLRLAAAVVGLGATGWLLSTVWPEPDQVAR TEPVAADNPTNLAPLPLGPVTLLVVGIDADQTNDPVNNAAPRGRANADAV MVVQIDAQQPLRVLQVPVELALQLPGQTTPVKLGSIWQTGGVALLSDAIR ELVGLPADQPHRYVVVPRRVLRSLVDGLGDLDVILNASFQRTDKAQNYTV NLQAGRQSLNGAQAEQLARYLKDSLDDPNRRLRQQLLIRAVVEQFKGPGV MGKIPGLVDVAASAVETNLSNPEMLSLAAAVLSSPSSVNIQQLPLAKRAG KQVLRQIKAGEPLPLWPRL >SYNW0273 conserved hypothetical protein MSHLVGLDPGRAKCGLVLVDPDQRLVLDGVVLPPSRVISQLKTWSNQGEL RLILLGNGTSSEQWNPALQRLASVEIVEERGTTLRARDRYWQLWPAKGWR QMLPRGLRLPPGELDAVAALVMVEDHLGHQCQWPQSRPAFKSVPAP >SYNW0920 probable ATP-dependent RNA helicase DeaD MNDQQLGETPCAVDLSASSLPEQATSEQGSADVFTTTIDAQQPESGFDGF GFSEALLKTLADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFA LPLLERLASGQKTPQALVLAPTRELAMQVADSFKAYSAGHPHLKVLAVYG GTDFRSQINTLRRGVDVVVGTPGRVMDHMRQGTLDTSGLRSLVLDEADEM LRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRLSKRYLKDPAEVTIR TKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFARTKAITLTV AETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDV DRIGLVINYDMPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFINNLE RATGQPIEAMEVPGNSAINQGRLDRLHKRLSEAAHNERSYEEEAALLKEL LQRIGTELELSPEQLAYAALSMAIGPDPLLRQKGDDEWIHNNQRRDRDRD RDRGGERRERRSDRPARAPEENMQRYRVEVGHRDRVKPGNLVGAIAGETG LQGRAIGRIQIFDNHSFVDLPKGMPEDVFNSLRRLRVMNRELQITQAS >SYNW1598 possible two-component response regulator or pseudogene MTADPLLLLVGASAVALAPRLAASGYSTVDWLSAGVASSTVQVGEEPLAA VLAADQAAKVRDLRQRFRGMPILLDLEQDSVDARAACLCAGADDFWLSSI APSDLLLRLRLHRTVQARLGQRPTLLELGDLSLDPATRHVRRAGRTVALT AREFALLLVLMRSPGEVFSREQLLQEVWQDERASSNVVEVYVRYLRQKLE ADGESRLLLTVRGRGYSLGPVVGDG >SYNW1380 possible DNA-binding response regulator MDLTPYLQQQPKTLNDEPLLSVAMTGKIALAMKGRFFLRCFCESLTERAQ IGCAVTDEVSCLDYLKQDTFEFLLCTDLLERGNGFELVRKARELQPDLKV VVLALSDAIPVGYDSAPWLEAVVAEADIIEDRKPLEAAVLAVMGHHSYRS PSLRSDELPYLSCPRLTPREYEVLDRLARGMSDRDIAEDLVVTEETARTY TKRLLRTLEVNNRVQAVLKGMRCGMVQI >SYNW1186 hypothetical MHAELHAIVDQVEAADPSKRPEAKALSDRVDALAQLHDAAEHHLVAKTPW HERNILLRAQAGELGLSLTGKDLAAVVATARANLRGESEGISPDDVFKIP EERWLAQDLIAARTLTLVVALQKVGKSAVVCNILGELAKGRGEFLERFSL APPCPKVIIVGTDQPLADWREVMVPNGLMIRTDLDNYRVCDPVVRLYTRE HGLHLDEAGIEKITADCEQNPWAVLVLDAFLSLIGPLGLDSDSDAAVQPL QNLLESIAPFNITTVLLHHSSKSRAHERASNASAGRGLSRMASHVVNLHW LNPDAKEDNWVRLTTEGRSSKSVDCVIEQVDRAIWSCHGDSNTISEQLDL SKVRAKLTERHSEVLSLVEEHWMLTSRAMEPAEVAKAMAEELGDNARQKA LQALDALANKRLVEKLTRSDHKRGKVVSFQPLKSRRCA >SYNW0317 conserved hypothetical protein MYAGAAIPVASWNQVRRTMTSPVQASTRDALLSLLLERGDADAADLAGAL NLSVQAVRRQLKSLAEAGLAEASPSVSGPGRPSNRWRLTDQGRDQFPDGS QRFALGLLNSMRASLPEETVRTLLNQQAEDKASRYRDRIGNGSLQQRLEQ LASLRRDEGYVTLCSPEEDGVSWRLQEVHCSVQRIAEEFPAVCDQELVLI RRTVPDCQVERVHWRLEGGHACGFRITPLQN >SYNW0808 two-component response regulator MSKTSMVWVVDDDPELRKMVGTYLIDQGYDVRCLCDVKQLEARLECQRPD LLVLDVMLPGDDGLTALRRLRDAGDDLPVVMLTARGDAVDRIIGLEQGAD DYLGKPFLPRELTARIDAVLRRRMAMPAGTPLVDGEQVHFGENVLDLSAR TLMKGGTAEIITSGEFSLLAAFAQHPHRPLSRERLIELARGPGSDTDSRS MDVQVSRVRKLVEPDPTRPRYIQTVWGYGYVFVPDGTPRSH >SYNW1294 conserved hypothetical protein MSTPSLAAQIEAIMYLKGRPIGLNELSDLARAEPQGVQQALLALSASYAQ RDTALEIVEQNGRFGLQLRPALADLVQNMLPVNLSTATLRTLATIALKKR ILQSDLVDLRGSGAYDHIKELLAQDFIERRRQSEGRSYWITLSEKFHRTF SVLPDLAQEPPAEAA >SYNW1621 Type II alternative RNA polymerase sigma factor, sigma-70 family MVSTAQKPTDSQRRRSSDPVSWYLATIGRIPLLTPAEEIELGNQVQAMMT LTEDGSKTFEDHELTGKQRRMLRIGRRAKERMMKANLRLVVSVAKKYQGK GLELLDLIQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQS RTIRLPVHLSERLTTIRKVSLDLAHKLGAMPSRVEIAEAMDIPLDELDSL LRQALTTSSLDAPVNGEEGRSFLGDLIADSSLDEPLDIVEQRIHHEQLGR WLSHLSEQEQHVLKLRFGLEGNERHTLAEIGRLMDVSRERVRQVELKALR KLRNLTRRLPSGI >SYNW0464 hypothetical MNLSVVSAKEQVTIPKAVLEALGLKAGDLVSLELEGAPVRLRLVSGGDQA YPQSLQSGLTEWASEADEAAFADL >SYNW1224 probable ribonuclease II MIASALASDFQTDAIVGVLLKGQPLIGRLLSCKGSKAVLAFGGQRRDQEI PLRELVPCGELSDSVRRSVLPTPDQVQSIVLSPRVSAEAWWLLVSDVTDD TLPCISLSDLTDLLVGRPDLIALAAVWSWLNGPQIWFRLRRDRTLQARPL NEIRQQRLKQRREHLQREHDLRQLALLQESAPLTEQRRELLDPTWSDRLD QLLELVHGPEADLGEMPGLGLLQLLGLPPDRKALKTWLVARELLDPHQPS ALRGSAWSSQLPEANAEIIDELLARAADSCSGDDTRVDLTAQRVYTLDDS STKEIDDGLALEPGDGGPWIWIHIADPARLIEPDSPLDREARRRATSLYL ANGVLPMLPLKLATEIFSLRAGQRCPALSVGVLLDDEGAVVASSCQRSWV QPRYRLTYEDGDELIELVPPGDEDLAQLSALLKRRFNWRQRRGAINFERQ EGRFRRGAAGPELQVIDPSPARVMVSEAMLLMGAAVAEIGRREGMALPYR SQPPAELPSAQELAEIPEGPARDAAVKRCLSRGLQGTSPMPHFSLGLEAY VQATSPIRRYADLLAHRQLIAWIEQRSVMSEPLLREQLDSLEDPLRQSIQ ISREDQRHWQQVWLEQHRDQQWSVQFLRWLRPQDRLALVHVPDLAMDLVG YADGEDPAPGQLLTMTVLHVDPDRAELKLRFQ >SYNW1509 Possible type II alternative RNA polymerase sigma factor MVSSLSAFLGEIGRHQLLTPEQELMLGRKVQAMVVITEPCQLAGGSGPSC EYSDEEKAVIRRGERAKNQMITANLRLVVNLAKRYQGKGLDLLDLIQEGT LGLTRAVEKYDPTRGHRFSTYAYWWIRQGLNRALSTQSRTIRIPVNVNEK LTKLRAAKARLMQRNGLTPTAEQLADFMEIPIAEVEDLLACELRSVTVSL QGVVKSKSDPSELVDVLPSDELPPMERAEIAERSASVWTLLGKANLTPKE RTVVTLRFGLDGTNEWRTLAEVARHMNCSREYCRQVVQRALRKLRKTGIQ SGLVESTL >SYNW0039 possible helicase MGDLISDSGSLSCGLDLSAAGLIRVVCPFDAVTQAQLRRIRPRGSWMGPS RGWEFPLAAAAALIQGFGTRFPVTPQLQQWLDWCHHPLPPLPPHRDLVAA ADLTMALRDGRRPLPHQRSGARWLLARRGAVLADEMGLGKTLTALLAARA MVRCAELRVMVVAPVGLHAHWRREAETVDLQPELVSWARLPAELPPAGTL LVVDEAHFAQSLQANRTAALLRLARHPRLRAIWMLTGTPMKNGRPAQLYP LLAAMDHPIARDQRQFEERYCQGHWREQRGQRRWQASGATQLEELRRLTR PLILHRRKAQVLELPPKQRREHPIALSDAESLGFDHRIDLLVDDFRRRAL KGEVRSDAEPLAVLTALRRVAAEFKLPAAETLVRTLLQAGEAVVLFSGFV EPLQLLQQRLGGALLTGRQRPVERQQAVDCFQQGGEDLLLATFGTGALGF TLHRARHVVLLERPWTPGDVAQAEDRCHRLGMEDEVLTCHWLQLGPADQL VDGLVASKAERIEILLGPRRLTLERQSLPLMVRRCLQVA >SYNW1044 putative SOS mutagenesis protein UmuD MDVRHQPLPLQPRRTRLSLPLAGERVAAGFPSPADDYVEVGIDLNDQLIR HPTSTFFLRVSGESMLGAGIHDGDLLVVDRSLDPRPGRVVVAVLDGEFTL KRLVQHHGRLRLEAANPAYPPLELHRCGDVQIWGVAIHVIHPL >SYNW0732 conserved hypothetical MSLSQLDQFLSLRESNPLLSQRLASPLELEDFLQLAREWGFQLTESDVLA AQKRAMDQGSAAALQRAQAEESRRLRNFIHG >SYNW1177 Transcriptional-repair coupling factor MPLRSLVTQLRSAALTGELLQRTERDARLLLRGAGRISRALVASALAQKE GRPLLLVVPTLEEAGRWTALLELMGWSSASLYPTSEGSPYEPFDPTSEII WGQLQVLSDLIGTDDPAGKAIVATERCLQPHLPPRQALEATCRTLKKGDE LDLDELAETLARLGYERMSTIDQEGTWSRRGDIVDIYPVSSELPVRLEFF GEELDKLREFDPATQRSLDPVDRLQLTPTGFSPLVADQLRESMPEGLDRL LGDEATEELLEGGTPEGLRRLMGLAWGQPACLLDYLPASAAVVIDERRHG VAHGQQWLDHAIDHYSDMASELGLSEEERDLLWPAVLQRTIDKAYGLAEA FHGFDMAELLEEDGHPNSFDLASRPMPAYPNQFGKLGELIKGFQKEKTAV WLISAQPSRAVALLEEHDCIGRFVPNPADAPAIERLIEQNTPVALKSAGT AELEGLQLPAWRLALVTDREFFGQQTLGSSGYVRRRRKAASRTVDPNKMR PGDFVVHRNHGIGRFKAMEKLAVSGDVRDYLVVQYADGLLRVAADQLGSL GRYRATSETPPQLSKMGGAAWTKAKERAKKAVRKVAMDLVKLYAERHQAN GFAFPSDGPWQNELEESFPYEPTPDQLKATADVKRDMEKAEPMDRLVCGD VGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERFAPYPIK VALLNRFRTASERKTILEGLKGGTIDAVVGTHQLLGKGASFQQLGLLVVD EEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTP PPLRRPIKTHLAALDPEAVRSAIRQELDRGGQVFYVVPRVEGIEDVAAGL REMLPGLKLLVAHGQMAEGELESAMVAFNAGEADVMLCTTIVESGLDIPR VNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAWLFYPGNGSLSDNARQR LRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVEQSGQMETIGFDLYMEML QESLAEIQGQDIPSVDDTQVDLPVTAFVPADWITDPDEKIAAYRAAADCR SGEALVELAAGWADRYGALPAAVQSLLQLMELKLLAKRCGVARIKPEKPN IVLETPMEEPAFRLLRQGLPQHLHGRLVYQSGKALQHKVMARGLGVLPMD KQLEQLMEWLRLMAAQIPDADGTTEAQRLEAEGQRNEAVLQV >SYNW1875 two-component response regulator MDIASDGATGLIRSRSEPAPDLIILDWNLPDFSGIDICQRIRAGGICTPI LMLTGHEEVSDRVTALDAGVDDYLIKPFSIDELMARLRAMQRRAEAFSGR NEPGQEAVQLRVADLSMDTRTRDVKRTGRSIQLSVKEYDLLNCLMRGSGR VLERQEIMRAVWGENFYGDDNLLDVYIRYLRKKVESKDAPTLIHTVRGVG FILREESN >SYNW0977 conserved hypothetical protein MGLIQTLQSRLLRYESTALRYRQAYFSAARNLARAQFLLGDAELSQRLWQ DVADRGLDVERIEQLMYGCWFQDDPDAMAEADAAYLSRTAPHESPGIFEH C >SYNW0080 conserved hypothetical protein MVRPPKLERILPWTGPSPGRMHPFGLQAVTPIRLVCHAPGAPGLRWLGLG PDLRPSRALLKLQRLFDRHATWARGRSFDQLRRLLAGSTAVVSLWRGKRL VAFGRATSDGFSRAVLWDIVVAGDLQGRGFGRRIVEELLHTPSVAGVERI YLMTTNSAGFYRQLGFRDADPQQLLVLKR >SYNW0102 Type II alternative RNA polymerase sigma factor, sigma-70 family MAPAAATASKPATSARSVSVDVDLVRSYLRDIGRVPLLTHEQEITLGRQV QDLMDIEAMQTELESRDGDKPSRDKLAKASGLTPLQLKRKLQHGRRAKER MVAANLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPTRGYKFS TYAYWWIRQGITRAIAEKSRTIRLPIHITEMLNKLKKGQRELSQELGRTP TITELAQYVELPEDDVKDLMCRARQPVSLEMKVGDGDDTELLELLAGDAD LPSDQVEEDCMKGDLRSLLGQLPHLQEQVLRMRYGMDGEDPMSLTGIGRI LGMSRDRVRNLERDGLAGLRRISDQVEAYVAS >SYNW0566 possible two-component response regulator MRETLRRSRSELKRRRIVIASADRVLITSLVGLFDGIGPLLGACTSEADT LTCLERSAADLLICTDLLESGDGPSLVQHARALRPELICLMLIQRPLRST IEAATAAGCQGLCSRELVGNGHLLKAIQAIDSDALYIDPVIAGVLRHSRL SRGHTSTSLNPELTVREEDVLRGICRGLSNQEIADQLNLSIETVKHSVTA VLSKLDARDRSQAMLIAFRNDLVDLPARLPRWTP >SYNW2362 SNF2 helicase homolog MSLLHATWLPAIRTSGSSGQPALLIWADTWRVATPEGPGLTPALHPFTLE PDDLKAWLQERDLLPGGSIDATACLTLPSRTVKPRKSRSKTAEPAPEEPI WTGLPMQAGEPIPKQTEWWPWQVQGLAVEPSAATEWLSRLPLSGRNPDLA DELRWWSHLQRWALSLVARGRWIPQMELSKGEGYPHRARWVPLLNREEDR RRLEDLAASLPLVATCALPWREPMGRRSNRMTRLRPEAMRAANPVACCRP RSGRLRVATLLEDLVDAQLRKDFEPSTDGLDPLLTLWQDALGSETGVIEI GDEQAERLASASFHWREGIAGDFAAARTCLELQTPAEGEELWELRFGLQA ESDPSLKLPAAAAWASGADQLQLGEVTVEQPGEVLLEGLGRALTVFPPIE RGLETATPDTMQLTPAEAFVLVRTAARQLRDAGVGVDLPPSLSGGLASRL GLAIKAELPERSSGFSLGESLDWSWDLMIGGVTLTLRELERLSGKRSPLV RHKGAWIELRPNDLRNAERFCGANPELSLDDALRITATEGDLLMRLPVHR FEAGPRLQAVLEQYHQQKAPDPLPAPEGFCGQLRPYQERGLGWLAFLNRF DQGACLADDMGLGKTIQLLAFLQHLKAEQELKRPVLLVAPTSVLTNWRRE AEAFTPELAVREHYGPRRPSTPAALKKALKDVDLVLTSYGLLQRDSELLE SQDWQGVVIDEAQAIKNPSAKQSQAARDLARPAKGNRFRIALTGTPVENR VSELWALMDFLSPKVLGEEDFFRQRYRMPIERYGDMASLRDLKARVGPFI LRRLKTDKTIISDLPEKVELSEWVGLSKEQKSLYSKTVEDTLDAIARAPR GQRHGQVLGLLTRLKQICNHPALALSENAVDDGFLGRSAKLQRLEEILDE VIEAGDRALLFTQFAEWGHLLQSWMQQRWKADVPFLHGGTRKNERQAMVD RFQEDPRGPQLFLLSLKAGGVGLNLTRASHVFHIDRWWNPAVENQATDRA YRIGQTNRVMVHKFITSGSVEEKIDRMIREKSRLAEDVIGSGEDWLGCLA GDQLRNLVALEDT >SYNW0091 conserved hypothetical protein MRFHIQQESDIPASTQLYNQICFAIAARHYPPGHRLPSTRQLAMQTGLHR NTISKVYRQLETDGVVEAMAGSGIYVRDQQKPREIKTPPHIRNRGVTDLD REVRKCVDGLLNAGCTLQQTRELLTREIDWRLRCGARVLVSTPREDIGAS MLIAEELEPSLDVPVEVVPMEELESVLESSSNGTVVTSRYFLQPVEDLVK KHSVRAVAVDLNDFRHELAMLKELRPGSCVGLVSISPGILRAAEVILHSM RGNELLVMTATPDVGSRLLALLRASSHVLCDRPSLPLVEQSLRQNRSQLM RMPQVHCAESYLSTDTIELLRKEIGLQTPAAAS >SYNW2496 Type II alternative RNA polymerase sigma factor, sigma-70 family MGIPLDSSGSTAKSSRKSPALPSTGRRASTRQGGRLATDSIGFYLSSIGR IPLLTAAEEIELAHHVQEMKQLQELPEEELTSRHRHKIRMGKRARDRMMA ANLRLVVSVAKKYQNQGLELLDLVQEGAIGLERAVDKFDPAMGYKFSTYA YWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRISRELSHRFGRQPNRL ELASAMGIEPRELEDLISQSAPCASLDAHARGEEDRSTLGELIPDPNGEE PMEGMDRSIQKEHLGGWLSQLNEREQKILRLRFGLGGEEPLTLAEIGRQI NVSRERVRQLEAKAILKLRLMTDHQQAA >SYNW1487 ROK family sugar kinase MDDGQAIGIDLGGTAIKLARFDPRGALLAELEVATPQPAVPGAVTMALCD AVEELDPDGAAALVGVGLPGPMDATARVARVCINLPGWEDVPLAEWLEVR LQRRVTLANDGNCAVVGEAWWGAAKGFSDVVLLTLGTGVGGGVLLGGQLF TGHNGAAAEPGLIGVDPDGPACNSGNRGSLEQFASIAALRRLCDRDPREL SLAAEEGEPAALEVWERYGTRLGVGLSSLVYVFTPQLVLLGGGLAGAARH FLPAVRREVELRVQAVSREGLRIDACALGNGAGRLGAARLALLRLGGMMA DD >SYNW0012 conserved hypothetical protein MSSKPPRRHSTPSFRGVAPPPQAMASLRQLFDSLSREQRRNQDLLVSLAF AQRSFTNLNRFLELVPVVASRLVGVQGAILVPFQSDGRLWREQLQAVPAE SNQDLLQRLAAFEPGHGAGFGTDDDQLLLMDRLVQRLCPGAGLFATSVVA RGRSRGRLYVFEPSGDLVWTDVHRRHVQLVADLAGVAIENDQMLQEARRH ERVDRQLSIGAEIQAQLLPDHCPVIEGVELAARCRPAFQVGGDYYDFIPT RPELTGRRRERGRWALVMGDVMGKGVPAGLLMTMLRGMLRAEVLSGLPPD RILHDLNQLAQEDLAQSHRFVTLFYSDFDPRSRRLRYANAAHNPPLLWRA ERRSISRLDAAGLLIGLQPEADYGLGEVRLDPGDVLLYYTDGVTEAPGIT GDRFDEARLIRTLEGACRSGQGAQGILDHLFDRLDRFVGADHHLEDDASM VVLKVPEAVSLPSVSPSISRLTS >SYNW1069 conserved hypothetical protein MLASTKLDRHRGSPMDRQQSDWPEQALTSSRDLHAMLSIDDRSWHRLKSR WDRRGAELLGAALVKLLSDGERDDVKALTEQALGWISGELKDPGCPHH >SYNW1232 Possible type 3 alternative RNA polymerase sigma factor MALTTDGMQCPDIHLFMSNTTVQRRNQQVERHLYLAERLARSFSQRTGLD HDDLYQVAVLGLIKATKAYRSETNVPFEAFARVHARGAILHYLRDSVALV RLPRRIEEEAQRLSQIHQPKNSREEWVQALYRSKNRWLPCPEEQQAQSNS GITMMVNAERRDAIQLAFSQLGDAEKHAVKAVVIDGRSLRNVGTSLGVSA MTVQRRVKKGLKQLKLRLGSLQTAH >SYNW2163 conserved hypothetical protein MWDPRSPGGRGRLDGGWDLGTMDSRALLIGNSRWHWATQRGERWSFDHAA PDPRWIDTTNLIWAAVGEVPAALEGAQESRLQLENVPLEGCPPWLGVDRA LGAWGAWRRQRFQGGDLDQGLLLADAGTVLSLTLLDAHGRFRGGRLMPGL RLQLQSMASGTALLPSVARQQRTDDLFPSGTAEAMCQGVMQGLAAAVVDA YQNSGACLWICGGDAPWLEQELTRRGVSAQTNQNLQLQAMVDLIPVIKPV PGR >SYNW1164 conserved hypothetical protein MLLRPASLAIDSTRRRTAGRTKNGTSFFKAAKASGCQSMGQSCSTPRPYL APSCRNQAPRWAVAEPETTNAEDSCFSTMTTSGWQRRELRRALPPAVRQR NIKVLNHLGIAGMIASRQTRRGPKERDDLEQEARVGLIRGWERFDPRRGL KLSTFLSTATNGQVLHFRRDRAVTIRVPWLFKLPSDSLSFAPYPLPGMDL VCRSLLICQCWYEPLYQADTRSARIGASGLNEYSLVFQ >SYNW1879 similar to chloroplast membrane-associated 30 kD protein MVLPFPMGFFDRLGRLVRANANAAVSSMEDPSKILDQSVADMQSDLVKLR QAVALAIASQKRLRSQAEQASSQATTWYERAELALKKGEEDLAREALTRR KTFQETATSLNAQVQSQDGQVETLKKSLVALEGKIAEAKTKKDMLKARAQ AAQAQQQLQSAVGNIGTNSAMAAFERMEEKVEAMEATGQAAAELAGADLE SQFAALEGGSDVDDELAALRNQLKGGPESVALPASEQSQAVTPVKVEEVD ADLEDLKRSIDKL >SYNW2370 conserved hypothetical protein MDHQRGFQQGEHQGECKAELALKVIQGRWSVLILRELVDGIQRFSDLQRA LEGVSQKVLTAQLRDLEADGVVHRTIHPEVPPRVDYALTDLGIELLPVLD GLHAWGERQADFNAASR >SYNW2059 conserved hypothetical protein MLEAQAHSHLKTLLRQGESNWPHHLTLSRLVGRSLRRGDRTLLRLAPNQR ERWWLGLLMPLCLQSSSAVLVLTAQQRQRLLQVERPRLARQGFRLACWEG NTPPPQDQLWLLDHAGLIQAHRNDLLGDRQLLLPGIDQLSEQLRRCMAIR LDASHWEQLRLALPQAEKPLLELHERLSRQLFREAPRVDACIRLDNSACQ SLRDLLAVMGPCPSPWSELLACDPREWSHWAELDHTMLQWSWCLEPLEPL QQLQGLLSQRPTLMLSDSGDSARLEQELQEANASPTVTAVLREAELEEPL PLFAPRRQPLPNTEIYAEHLLEQSRRLILGRPGLTVLLLDDPSLRRSLTA SLAAEFGTRVQDECTAPEDNGVISGSWSWWLQHLDQLPEPEQIIIGLLPI ASLTSPITAARVERLKSQGADWFRSLLLPEALRQIPAAVAPLRRSGGRLA VLDGRLRGRSWGDQVLQRLEPWRPLQRLLPD >SYNW0643 hypothetical MIPDPYTQSIMQKALEAHMTSSLCLSVLIGCPASPTLLPENPCLIINAES IDRKELIAQESFCAHYRELSADDVVLLNQTVISELDHQIVEWHSFSDRRF NGPSQLSEFSEQYPNLRLVESRKIEGITLSTVLVDQKSLSDPLSTFELIL REGDPLVVLQSAKEWLARCTRITLRGLVTSSKSREAAEAFLGASGFCKSS VDSCVWTPELEVSSLHLSLIRCGLLALFNADVYRELYPQTQEMTDVELID HWLSQPDFRDVSKIMKDATQRNPTPLAELTDQDPALQLLQNIFPFDFYRS QRTDLSQIPNRELINHYWTHGQYEGIDLSESNVKNVLGKDQSLQVNRLNT RIHELEHLLSCANAQISAMQKLIVSSRDSGATNEQY >SYNW0987 conserved hypothetical protein MTLQTPASFNPELATWLSQQGISLALSTYRANRLIFLGVDHSQTLRVHER LYDRPMGLFTSGQSLWMAGRSHLWRFDNLLAPGQHHDGADRLYTPAASFL TGEVNAHELVLTAEGAPLFVNTVFSCLAELTPGCSFRPVWQPPFIDALKP EDRCHLNGVALKNGEITWATACSAGNTPTSWRNTRQEGGVVVHIPTGSIT TRGLTMPHSPRWYQDKLWLLNSGTGELGWIEQERFQPLCTLPGFVRGLAF AGGCAVVGLSKLRSPQFTGLPLEESLQTSGQPKGCCGIRVIDLASGNVLH SLDLPEPIDELFDLAVLENCRQPKALGLVDDAIDCLVKLPQQDNLVRIKP SIPSGTPHQGPAVERLGLPQPTPADGTAVHYQRVFQLTEATLAPFASLTY PSLAPGSAAWRKLKGELLGIAANQNGTLVGLALAECTPEGNARLVSLCVS PPQRRQGIGTRLIAHLSVFLTQQSQTSLSVSYQAPHRQPGPLDRLLPRLG WSPPRQTFLLLEGQAAQLASMNWPERFLFPAGYQLVPWRADYADVAAQFP AGDNLTAAMQSSQLEAQASLALLHHGNVVGWVLVDRTSANATRISSLFVA KGHRPRGQALTLLVHAFRQQHAAGIPIARAAVAPHSQAMLRLVDRHLGAH LKSVTSARSSQLTLKTAGAQQR >SYNW2427 Possible type II alternative RNA polymerase sigma factor MAKGFALQFAEAVDAQQAKHHPKEPVQSIACAALAVDRGTPRRAVGTAGY SHLAQFEPCVNRADPEGIQRFCRTDDGCGEPCRQSNCSTPLPRQPRRTGE TRDRRSRSTTDLLRLYLQDIGRVDLLTNEEEVTLARLVQRREALLQQQRD LATSDAAIGELYRLEELQRREANQHSHWPTKQEWARAAHLSLAELQQRIE AGYGAWAREANLEARELKTALRNGRRAKDHMIQANLRLVVAVAKKYQQRG MELLDLVQEGTLGLERAVEKFDPTRGFRFSTYAYWWIRQGMTRAIATQSR TIRLPVHVTEKLNRIKRAQQEIATNEGRIASIADLARALKLSEDTVRQTL ARVPRSVSLDTRVGRDQDTQLGDLIEDGKATPEQTLTHDELHNDLEHLLD ELTSREAAVLRRRFGLEDDTPQTLAQIGEALKLSRERVRQIETRALLKLR QPQRRSKVRDYIQGLDS >SYNW0904 two-component response regulator MTSTPRDLTVEPSAPSADPLILPQSGTGQEPSRVLVVEPHPTLRTVLVQR LRQDGHLTAAVGRASEALEVCQDQSPDLLVSAEILEQGSALRLADQLRCP VIVLTARSGADPVVGLLDDGADDVLRKPFGLEELAARCRTLLKRGHNGLQ ERVTVGPLEVHLLLRQVTLRDQPVELSPREFALLCALLMPPGLVRSRQEL LRMAWPPFSGGPRSVDTQVLTLRRKLEQAGLGEGGGITTVRQRGYRFSLD TLPAS >SYNW1973 possible transcriptional regulator, luxR family MVSDIPLTPAEQRVSALLLQGLSNRAIAERLVISHRTVECHISRALAKTG CVNRLELALRMLTMPSTPA >SYNW2105 putative transcriptional regulator MTGLSTSTIYRWMTDGTFPKQIQLGSRSVVWNERDVIDWMNAQNANT >SYNW1665 conserved hypothetical protein MTGLSRSTIYSHMSQGLFPKQSKVGTRIAVWLESDILSWIEQTTKQ >SYNW1314 conserved hypothetical protein MLIYVCSSSHGFGHAARDAAVLQQLRRLRPDWRLVMSSIVSPGFLSLLLG DGGIEQRPCRWDVGMVQADALGSDPSATLIALAELDARLPEQIQSEVSWL REQGLPVLILGDIPPAAALLAEALDAPLVWMSNFGWDAIYRPFGGAFELM AERAQAAYRCGQLLLRCPFDLAMDWGLPEQRLDLVCGTPRALPDALKAFL ADMDSPIIQVGFGGMGLELDPQLFVHWPDHHFLMACPPDPQTSARLAGIA NLTLLPAGVRPMDAFPYCERHIGKPGFSTFCEALSLDLGLHVVVRRDFAE VSALMQGLTRHGRHRLLSRDQLMGSDWQLDQPLLPAEAEPLSSGGALQAA EQLVRVCDQLCY >SYNW1660 possible transcription regulator MTGLSISTIYRWMTDGTFPKQIQLGSRYDVWNERDVIDWMNAQNAST >SYNW0623 conserved hypothetical protein MSHFSTVKTELRQLEPLVQALKDLGYLPDQGERPVRGYRGQTVTADLAVA MDNGGDLGFRLNEKTGAYELVTDLDLWKQTIPVERFLSKLTQRYALNTVL KASGIEGFQVAEQQVKQDGSIELVVTRWDV >SYNW1582 SOS function regulatory protein, LexA repressor MSWPQSRLGSCAARTPSVQMYCSAPCFVTISSPEPLTSAQQELYDWLAEY IGTHRHSPSIRQMMQAMGLRSPAPIQSRLRHLQQKGWITWQEGQARTLQL LGDMAAAAGIPVLGAVAAGGLVTAFDDVQEHLDLAPVLETRGLFALTVNG DSMVDAHIADGDVVLMEPVPDPQRLRNGTVVSALVAGSGTTLKHFHRKGA AVVLEAANPAYDPIELPAEQVEVQGRLVAVWRQV >SYNW0010 NusB family protein MATRSLARELALLVLGQVSDQKPIPAANLAMDSVLEQALDSLMQHWRESL DASAAELEQAQQSLLDSELQSGESAALPTGQDHLRSCLTMAEQVLNGLSA SLELPRLLMLGDQEQIRHGAMDRVSCVLNKRDRIDAELDSVMEGWRLSRL PRLDRDILRLAVVDLRDLGTPAPVAFSEAVELANRYSDEQGRRMINGVLR RFHDAASKAVG >SYNW2268 possible transcriptional regulator MSSSDPSDPLNISLSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVS NVFTKTGSKNRVALLNWAMDNGKICRDGFNCCALPDADGPE >SYNW0798 Putative transcriptional regulator, ArsR family MQNTLTTEQSRQTLKALADPTRLDVIHALAEGERCVCDLTADLGITQSRL SFHLRVLRDCGLLTDRHSGRWTYYRLQPDALSALEDWLAALRQHCSRSAP LCSD >SYNW0926 similar to membrane bound transcriptional regulator MAALLSSLRHRPLWQVCGLGLAVGLLVSVPLARRHPLAGWWGLGIGEVVV LGQDAGGSNTDTIFTLKVKPGSTRITQIPRDSYINPDGFGAMKINGLLRR GGPEAVERELTRLMNRPVRHHVVVSLQTLPLLANLVGGIEVDVPKRLYYV DRSQDLVIDLQPGRQVLSGKALEGFLRWRNDGYGDFGRLERQQLALKGLA NRLRQPQNLLKLPLLLGVVRTQVQTDLNPLQMAGLATGLICTDLDAHRLQ ARPFSRGGISYLETTWPN >SYNW1984 conserved hypothetical protein MQCPSYQNTDSRVLESRAADGGRSVRRRRECLNCEFRFTTYERVETVPIT VIKRNGNREIFSRSKLLHGLNRACEKTGLDASRLETLVEELELKLQQRSG REVSSAEIGELVLVELKQMSEVAYIRFASVYRQFQGIDDFVSTLETMNRK AGPGHLAAVG >SYNW1423 conserved hypothetical protein MVFCLDPSSRGIGRSISSAPSLFTPSVRAGIGIDADDFRLSPTASSDRFS FHLLRPDSPLIAGYWSLRRSIFCEEQHVFEQSDRDELDRIACPIAALHHD CQPDEDKQGPESQVVGVVRIVETEPRLWYGGRLGVHSDFRRHNQIGKGLI WKAVTTANGWGCDRFMAMVQIQNVRFFRRLHWASIEELEIRGIRHHLMQA DLNYYAPSRERRPSCSLLPSLAA >SYNW1540 possible acetyltransferase MTSPLVLPAAPLLEQYGEEARLCSCANDQLTLVFSRRHPFDLVELEQLLE AVGWSRRPVRRVRKALANSLLTVGLWRHDPRIPRLVGFARCTGDGVFEAT VWDVAVHPLYQGSGLGSQLMVYVLEALEAMGTERVSLFADPGVVNFYQRQ GWELEPQQHRCAFWYAS >SYNW0599 conserved hypothetical protein MSQHPILRRCVACRQLLDRRSLWRVIRDHQDGVRVDGGMGRSAYLCQREA CLEEARRRKRLQKALRCQVPDDVLAALEQRLRNATDVTAEAN >SYNW2279 hrcA, putative heat-inducible transcriptional repressor HrcA MKPLSARQQQVLQATVHHYVDTMEPVGSRTLVQRFGIPASSATVRSAMGA LEKRGLLTQPHTSAGRIPSALGYRCYVDDLLPEPGVAVQHLERELTGLSL RWAALDDLLQQLARRLTDFTGLMSLITRPQQPRAQLEAIRLVQSGDRLLV MLVEDSGRASHLNLRLPPGASDELTAIERWTDQQLEDGSINWRSLPPQLQ RSGDVLRSALDHPSMSPETPLVVHGLSRLVAEPEFHSTAELRPLLELIDD QPCAVVSATDQPGVWIGEEHPQKALQACSVVQAPYRCGQEGVGQVALVGP MRMAYATAHAAVQRVARHLDLLLN >SYNW1414 hypB, hydrogenase expression/formation protein HypB MHMPLEDTLGLNLLAANQHQAEHNHEHFQAWNLLCLNLMSSPGAGKTALL ERSLPALAAKHKMAVLEGDMTTQLDAERLEAVGIPVVPITTGRACHLDAA MVSGGLTLLKQRLDPTQLDLLLVENVGNLVCPAEFDVGEHHKVALLSVTE GDDKPLKYPLMFRQADVVLITKVDLLPHLPVELAAIRRNILSINPNATVI EVSALSGEGLDVWHQWVRQALADRTAVSSAAARAADQSPALATA >SYNW0600 nusA, N utilization substance protein A MALVLLPGLSNLIDDISEEKKLPPQVVEAALREALLKGYERYRRTMYLGI SEDPFDEEYFSNFDVGLDLEEEGYRVLASKIIVEEVESEDHQIALQEVMQ VADDAQEGDTVVLDVTPEKEDFGRMAAATTKQVLAQKLRDQQRRMIQEEF ADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQLPNDNYRA NATFKVFLKEVSEVPRRGPQLFVSRSNAGLVVYLFENEVPEIQEGSVRIV AVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELR GEKIDVIRWSQDPGQYIANSLSPARVEMVRLVDPVGQHAHVLVPPDQLSL AIGREGQNVRLAARLTGWKLDIKNSTEYDQSAEDAVVAELISQREQEEAL QMEAEERLAAEQAARAEEDARLRELYPLPEDDEDYVEGDQLGESEQTEAT ASEEMPGEEPTSEEPAPEDDGEVAR >SYNW2344 nusG, transcription antitermination protein, NusG MPDDLTTTDPAEVLDLPAPNEGEEGTLSDVPAANTAIARWYAVQVASSCE KKVKATLEQRAITLGVSKRILEIEIPQTPAVKVKKDGSRQSTEEKVFPGY VLVRMVLDEDTMMAVRSTPNVINFVGAEDRRAAGKARGHIKPRPLSRAEV DRIFKRAAEKKTVVKVDLTEGDQILVTAGPFKDFQGEVIEVSGERNKLKA LLSIFGRETPVELEFSQISKQN >SYNW0947 phoB, two-component response regulator, phosphate MPAAVATSRLLVVEDDDSIRETVGEVLRAEGYDVLTCGDGAEALNLFTSE PAQQVDLLVLDLMLPGLGGLDLCRELRRINNNTPILVISARDSETDRVLG LEVGADDYLVKPFGLRELVARCRALLRRAQQDPSVLPEIYSHANLCLYVN ECRVTRDGNDLNLSPKEYKILELFLQHPKRVWSRDQLLEKIWGIDFVGDT KTVDVHIRWLREKIEEQPSSPELIRTVRGFGYRFG >SYNW2260 rbcR, putative Rubisco transcriptional regulator MADLPFTLDQLRILRAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEV SLFDRGGRKAQLTEAGHLLLSYCDRILSQCHEACRALDDLHNLKGGSLIV GASQTTGTYLMPRMIGLFRQKYPEVAVQLQVHSTRRTGWSVANGQIDLAI IGGELPPELNDLLQVVPYASDELALVLPVKHPLARLAELTKEDLYRLGFV CLDAQSTTRKMVDQLLARSGLDVQRLRIEMELNSLEAIKNAVQAGLGAAF VPVVSIERELAAGTIHRPVVADLQVRRQLKLITHPARYSSRASAAFRQDV LPVFASADSPLRQAKPSQPQPLQA >SYNW1093 recG, ATP-dependent DNA helicase MADSSRSQESRGLNREQLTELLGWLKPLQQALSLEVETGFNNLQGRQQRF DGFLVHQLAAPPPLPYPPGVEARLQRLHQGFVGYEELPESGRRRLVTDTR QWLHELRLRLEPSAPMAPPRLRLATATASAPRRELGLDSPLTQLQGVGPK LAGRLAAIGLLLVRDLLKHYPRDHVDYATRRRIEALVVGETATIVATIRR CNGFVSPRNPNLSILELQLQDPTGRIKVTRFLAGKRFSSPAYLKGQQRLY PQGATVAVSGLIKEGPYGATFQDPLIEVLESSNAEVRSRNIGRLMPVYGL TEGVAADRFRQLIDQVLPLARAWPDPLNQTERRDWSLVSLPEAFQGLHAP DDPSQLDQARRRLVFDEFLLLQLGLLRRRRTLSQRPCPQLELIRRGDGLV GKFLASLPFAFTAAQERVFGEIEADLQRSQPMARLVQGDVGSGKTVVAIA ALLSTISSGWQGALMAPTEVLAEQHHRNLCRWLPPLHVTVELLTGATPKT KRRQLLDDLANGSLKVLVGTHALLEDPVVFSRLGLVVVDEQHRFGVHQRD RLLNKGLQPHLLTMTATPIPRTLALSLHGDLDVSQIDELPPGRTPIRTAM LTAAQRSQAYELIREEVARGQRAYVVLPLVEESEKLELRSAVEVHAELAS EVFPELTLGLLHGRLNSADKQSVLRDFADGRSQVLVSTTVVEVGVDVPEA SVMVIDHAERFGLAQLHQLRGRVGRGAAASHCLLINGSSNPLARQRLDVL VCSNDGFEIAEMDLRLRGPGQVLGTRQSGLPDLALASLADDGAVLEDARA AAQQLMEQDPDLSAHQVLLALLEEQQRRLSGAAPLN >SYNW1379 rimI, putative ribosomal-protein-alanine acetyltransferase MTASLEIRPFQETDLDFVRQLARQEDFAPGIGDIAIYANTANQGVWLAWQ GDMPVGCIAAVKYNLDYGFMGLFVVHPDHRGGGVGRQLWDHALALLADVT CIGLEAAPSMVEFYQRQGFRKDSITTRRQHLRLEESSQHPTRRLLHRNDI TIVPLKAISLDAVQAYDERHEISPRPHFLQQWLNHQAGDVFVAMDGSHQC HGYVRIRPCLLPIGQGWRIGPLLAEEPGIASLLLSNAMDRHKGIILIDTP GHNRSARTVAGAKGFRRMGATHRMYKGDLDNGHDQNIYGLACLELG >SYNW0152 rnc, putative ribonuclease III MDQARRDSLKSLIKRLGLEDMDSPSLLLEVERAMTHTSSGRTDHNERLEF LGDAVLRLAATLYLDRHHPGLTVGDSSSLRAQLVSDRWLAELGEAIDIES CLILGVKALGDAAARTTIRADATEALIGALYKVSGSLEPILGWLTPHWQR TSADVLAAPHRFNGKTTLQEWSQGQGLGLPEYSTEERSQVHGDPQRFRST VRVASKVLAEGHGRSRKEAEQNAAIAAAQTFAGNAAPH >SYNW2236 rpaA, two-component response regulator MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLI LLDLMLPKVDGLTLCQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGAD DYLTKPFDLEELQARVKALLRRSDRAPVGSSNHNEILSYGPLTLVPERFE AIWFDTPVRLTHLEFELLHCLLQRHGQTVAPSLILKEVWGYEPDDDIETI RVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLELPIGGELDDLQDVVAIAR NERNQDSERASA >SYNW2246 rpaB, two-component response regulator MTATTPSKETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFEN TAPDLVVLDVMMPKLDGYGVCQELRKESDVPIVMLTALGDVADRITGLEL GADDYVVKPFSPKELEARIRCVLRRVEKESVAGIPNSGVIQVSDLRIDTN KRQVFRADERIRLTGMEFSLLELLVSRSGEPFNRGEILKEVWGYTPERHV DTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIIDSVASEGP >SYNW2090 rpoA, RNA polymerase alpha subunit MLQYQIDRIEHQVEEDRSQSGVFLIGPLERGQATTLGNALRRVLMGGLEG SAVTAIRIAGVNHEYATVPGVREDVLDILLNCKELSVNSRSPELEIGRLV VAGPAEVTAKDLQFSSQVEVVDGNRSIATVADGYSLELEVHVERGVGYRP VDRHSEDTSAIDLLQIDAVFMPVIRVNFTIDETAVAEGGSARERLRMEIV TDGSITPDDALAQSANYLIELFQPLATVTLVEEPGIEPEPSAEAQIPLEE LNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALER IGISIPQSRTSA >SYNW0613 rpoB, DNA-directed RNA polymerase beta chain MSSSAIQVAKTATYLPDLVEVQRASFKWFLDLGLIEELESFSPITDYTGK LELHFIGSEYRLKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQ EVFIGELPLMTERGTFIINGAERVIVNQIVRSPGVYFKDEMDKNGRRTYN ASVIPNRGAWLKFETDKNSLLHVRVDKTRKINAHVLMRAMGLSDNDVLDK LRHPEFYKKSIDAANDEGISSEDQALLELYKKLRPGEPPSVSGGQQLLQT RFFDPKRYDLGRVGRYKINKKLRLTIPDTVRTLTHEDVLSTLDYLINLEL DVGGASLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETD SLTPAQLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGP GGLTRERAGFAVRDIHPSHYGRLCPIETPEGPNAGLINSLATHARVNEYG FIETPFWKVENGVVIKDGDPIYLSADREDEVRVAPGDVATESDGRIKADL IPVRYRQDFEKVPPEQVDYVALSPVQVISVAASLIPFLEHDDANRALMGS NMQRQAVPLLRPERALVGTGLETQVARDSGMVPISRVNGTVIFVDATAIV VQDEDGQEHTHYLQKYQRSNQDTCLNHRPIVRCGDQVIVGQVMADGSACE GGEIALGQNVLIAYMPWEGYNFEDALLVSERLVTDDLYTSVHIEKYEIEA RQTKLGPEEITREIPNVAEESLGNLDEMGIIRVGAFVESGDILVGKVTPK GESDQPPEEKLLRAIFGEKARDVRDNSLRVPGTERGRVVDVRIYTREQGD ELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRILPREDMPYLPD GTPVDICLNPLGVPSRMNVGQVFELLMGWAASNLDSRVRIVPFDEMHGAE MSQETCEAFLKEAAKQPGKAWVYNPDDPGKLVLRDGRTGQPFDQPVAVGY SHFLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALE AYGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPRPGTPESFKVLMRE LQSLGLDIAVYTDEGKEVDLMQDVNPRRSTPSRPTYESLGVADYDED >SYNW0614 rpoC1, RNA polymerase gamma subunit MTNSNLRTENHFDYVKITLASPERVMEWGQRTLPNGQVVGEVTKPETINY RTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESR VRRHRMGFIKLAAPVSHVWYLKGIPSYVAILLDMPLRDVEQIVYFNCYVV LDPGDHKELKYKQLLTEDEWLEIEDEIYAEESEIENEPVVGIGAEALKQL LEDLNLEEVAEQLREEINGSKGQKRAKLIKRLRVIDNFVATSARPEWMVL DVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFR QNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQN IVNNIKAAKKLIQRADDEVMQVLQEVIDGHPIMLNRAPTLHRLGIQAFEP KLVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLAIEAQTEARMLMLASNN ILSPATGEPIVTPSQDMVLGSYYLTALQPGAEQPEFGDRSRTYSSLEDVI HAFEDTRIGLHDWVWVRFNGEVEDNDELDEPIKSETLSDGTRIEQWTYRR DRFDEDGALISRYILTTTGRVVMNHTIIGAVAAA >SYNW0615 rpoC2, RNA polymerase beta prime subunit MTSSSSKSNKSRKSSKAAKDTTPVHESASRPLSKTPPPFRNHIVDKRGLK QLVAWAYKNHGTAVTSSMADKLKDLGFRYATQAAVSISVNDLQVPEAKKA LLGEAEEQITATEERYRLGEITEVERHTKVIDTWTETNERLVDAVKKNFN QNAPLNSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIIDLPIRTNFR EGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREDDC GTTRHIVVEAEDGRFGNRLVGRLTASQVVSAVGEVLAERDTEIDPPLSKR IEKAGVTAVSVRSPLTCEANRSVCRKCYGWALAHNELVDLGEAVGIIAAQ SIGEPGTQLTMRTFHTGGVSTAETGVVRSVVAGTIEFSAKARVRPYRTPH GVNAQQAEVDFNLSIKPVGKGKTQKIEITNGSLLFVENGQTIDADVTVAQ IAAGAVKKSVEKATKDVICDLAGQVRYEEAIQPREVTDRQGNITLKAQRL GRMWVLAGDVYNLPPNAQPVVQGDTEVTEGQVLAEASQRSEYGGDVRLRD SIGDSREVQIVTTAMTLKDFKLLEESTHSGEIWNLEAKDGTRYRLNTIPG SKIGSGEVVAELADDRFRTGTGGLVKFAPGLAIKKARSAKNGYEVNKGGT LLWIPQETHEINKDISLLMITDGQWIEAGTEVVKDIFSQTAGVVTVTQKN DILREIIVRSGDFHLSSDSKALERFEGDGHMVNPGEEIAKGLSIQDMKYV QTVETPEGKGLLLRPVEEYTIPNEAQLPELSHVKQANGPHLGIKATQRLA FKDNELIKSVEGVELLKTQLILETFDTTPQMTVDVEKAPDKRAKTISRLR LVILESILVRRDTMSDSSHGSTHTELQVEDGISVKAGDVIATTQILCKQA GVAQLPEATEADPVRRLLVERPEDTTTLSTSGKPVVAVGQRIVDGELLAE GDPSSCCGEVEAVDSNSVTLRLGRPYMVSPDSVLHVRDGDLVQRGDGLAL LVFERQKTGDIVQGLPRIEELLEARRPRESAVLCKKPGTVEIKQGDDDES LTVTVIEADDAIGEYPILLGRNVMVSDGQQVTAGELLTDGPINPHELLEC FFEDLRSRKPLMDAAQEAIANLQHRLVTEVQNVYKSQGVSIDDKHIEVIV RQMTSKVRVEDAGDTTLLPGELIELRQVEDTNQAMAITGGAPAEFTPVLL GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLI PAGTGFSGFEEELQKEAGPHPDILSEDPAGYRRMQNLRPDYTVEMPPAAS STAVLDDPSDADLEATRTRHNIDPSASNFAAFARPDADNELKEEQVVDAE AVEGLQEEGLLSDD >SYNW0525 rpoZ, putative DNA-directed RNA polymerase (omega chain) MISAGVDSSDLAKRGESLIRQSSNRYLTTVRIAFRAKQRRFDDFDGLLEE SSVKPVQRAIVELSDEQDQPDLLPG >SYNW1783 sigA, rpoD, Putative principal RNA polymerase sigma factor MSPAATKTAQPDIVLLANSEGEVREVKSNAETKKAPARRRSSKASAKDLT AAADELLSAADPKKAEAGKTKAKAAPKASTKKTTAKAATAKKPAAKKASA KKASSKTSAETDAAPAKAVVAKPEIVLSPEEKAKAIAAEKAAKAKALASI KIGPKGVYTEDSIRVYLQEIGRIRLLRPDEEIELARKIADLLHLEELAAQ FESDNGREPDKKEWAALVEMPLIRFRRRLMLGRRAKEKMVQSNLRLVVSI AKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAIT RAIADQSRTIRLPVHLYETISRIKKTTKVLSQEFGRKPTEEEIAESMEMT IEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADIENPEQDVAKNLLR EDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFDVTRERIRQIE AKALRKLRHPNRNGVLKEYIK >SYNW2324 spoT, guanosine-3',5'-bis(diphosphate) 3'-diphosphatase, (ppGpp)ase MLDASSPQDSSRTDSAPAPVVCGRPELRRHPVRHPDEYNILLPEWLRQCI LNVPPGLGQSCPTDPEALLVAAFDFGFQLHEGQFRASGDPCIVHPVAVAD LLRDIGASASVIAAGFLHDVVEDTDVTPDQIELHFGSEVRELVEGVTKLG GIHFNNRTEAQAENLRRMFLAMASDIRVVLVKLADRLHNMRTLGALKEEK RQRIARETKEIYAPLANRLGIGRFKWELEDLAFKLLEPEAFREIQQEVAS KRSEREERLGVTVALLNDRLAQAGLEGCEVSGRPKHLFGIWSKMQRQQKA FHEIYDVAALRIITPSVEACYRALAVVHDTFRPIPGRFKDYIGLPKPNGY QSLHTAVIGRHRPIEVQIRTIEMHRVAEFGIAAHWKYKEGGSPASSSSEA ERFNWLRQLVDWQQEGGNDDHNDYLSSIKEDLFDEEVFVFTPKGDVVGLR KGATPVDFAYRIHSEVGNHCHGARINDRLCPLTTALHNGDFVQILTSNTA HPSLDWLNFVATPTARNRIRQWYKRSHRDETIERGKDLLERELGRDGFEA LLKGEAMTRVAQRCNVGSTDDLLASLGFGAVTLQQVLNRFREEIRLIAEQ DSAPPSNEEVARALVPSKEPGSDQRHSEDAILGLEGLDYRLGGCCSPLPG EAIVGTVALGNHGITIHRQECANVESIPKDRRLPVRWNVHGAQPLQRFPV QLRIEVIDRVGILKDILMRLSDGAINVSDAQVKTAVGRPARIDLRVELRG SDQLNRTMDQIRSMADVIGIARTGVS >SYNW2443 ureG, urease accessory protein G MSSKLRLGVAGPVGSGKTALVEALCLRLRDQLQLAVVTNDIYTQEDAQFL TRAGALEPERIRGVETGGCPHTAIREDCSINRAAVADLEGQFPDLDLVMV ESGGDNLAASFSPELVDLCIYVIDVAAGDKIPRKGGPGITRSDLLVINKI DLAPLVGADLSVMEADTRRMRGERPWCFTNLQNGDGLVQVVEFVLQQLPN A >SYNW1202 zam, putative acetazolamide conferring resistance protein Zam MKAGFDPHTMKFSVADLLDQLSYDQPVLQTTLAKILKLSNKADKERLDLA IDGLSKLGVLSRQGDEGLVRYQAEDLIDARLRCSSKGFCFAIRDDGGDDV YIRDHQLNHAWNGDRVLVRVTREGGRRRSPEGGVQCILERSTQSLLAQVE RQQERLVAAPLDDRMLTSIELPADAEVHVSEESATTVVEVKIDRYPIAQH PAQGHVARPLPLNAGPAADRDLLLTKAGLHERPAAPRASVKSPPSKGRTD LTDQPSLLLCSWQHRDAPPLPAVYVEARDGGCRLWLHAPSVAERFGQGNS LDLWIRDRADAICLGEDWQPLLTPALTKACRLKAGESSDALTVRLDIDAN GHLTDWEFMLSTIRPVADISTAQLRALAERKPKSRSIPAALKPIKDQLGQ LETLMFCADCLMGHEQSAGAVALDLRPPQIDALGDLRWADPSGQAHRWTD VIDRTDPNSILQPLLRAADRAWGQHRAALQLPGIAWISSEPDATVLTDVA KTAVALDLPLELDDDGSPTAQELITVFAESDQRRVLEQQLSHALAQPQFQ AELKTPETSDDDTTDMSAALTPWCCGSLSYAQLANQQVIQMLLNDGKDRP NVRQKERLNLGRRGCADDLQWSLFTGAQEEKLTNIVSQRLVQRLNSRRRQ VLELQRDLLAMVQARSAEPLVGQEAAGHVSGVQSYGFFVEVGETRVEGLV HVSSLNDDWYEYRSRQNRLVGRKNRRAYQLGDQVRVRVIKVDVLRNQIDL EVIPEPTADEGDNNADSSTVESPEQPMAVTLSGI