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# Tropheryma whipplei TW08/27, TW08/27

>TW421 putative CarD-family transcriptional regulator
MQFKVGQTVVYPHHGTASILEIKKRVIRGEEVTYLKLHVSDGDLMIEVPA
EKIEAVGLRGVIDSDGARRVVEVLRENLVDEPTNWSRRYKSNLEKIASGD
VTKVTEVVRDLSRREKTRVLSAGEKRMLTRARGILVAELALARHTNQEDA
EALLDEVLAE
>TW534 conserved hypothetical protein
MSGNLAEARQRAGYRGVVAARVAGITYRQLDYWARTGLLIPTVQEASGSG
SQRIYDFKDILVLKLVRRLLDVGISLQQIRVAVEQLRSAGLKDLSAVTLM
SDGVSVYLCRSNSDVIDLLAKGQGVFGIAVGKVLREIEDTLTGIESREMN
AERKYLLL
>TW533 conserved hypothetical protein
MRCLFCRSDDTKVIDSRTSEDGISIRRRRECQLCKRRFSTLETASLTVIK
RNGTSEPFRREKVVTGVHKACQGRPVTKADLAVLAQRVEESLRASGNSQV
DSNDIGLAILPELLRLDQVAYIRFASVYQDFDSLEDFSRAVERLKNQ
>TW165 putative serine/threonine protein kinase
MIPFFNKHTRSTDDKDTEKARQIIGNYRVIKTLHESDRAVIYLAQEISGD
PGMVARQSFMDPGELVNLVALKMYRAGVTSEHIAIEADALDSLRGPGVVE
LRDVLNLPDKRGLVMRALHGPALVDLWETRGSLSPGEMVTILASLVATLA
RISSAGYAHGAVWPGNIRFDDIGRPVLTGFSSARKHAPPNADWLDFYSLL
RGCAVLINEKQEQMLQISAGVRKRLDPFDPELPAWVEASLFRLADPQPLR
FEHPISLHDTSGYNLRESPNPVDSNRQTGKSQIILKLTDNKYVAAILGKL
KRPSVLFIALFVSVFVVLLMVIPNNSGEDNERKSEKPGYVKSKGTFKKPS
KTGKSRKRSEVSEKLRKNMEECLASKDADCVDVMSEINADLGEKLDEG
>TW071 putative regulator
MGLSRKNAQSAEKLFKCLASASRLKILFVLLESEKSVGDITVDCDMSQPL
VSQHLRHLRDNNLVYTKRHGKQVYYSIADEHIKHVVADCIQHVQHET
>TW535 conserved hypothetical protein
MSSAQEKTDRPFTIGQVLSILKKEFPDVTSSKLRFLEEQKLIIPPRTSAG
YRVFYPADVKRIRVILRMQRDEYLPLKIIRSRLDSANIALSTTSGVSMRR
EELVSRAGVPATLFTEAVTHSLIKPSECYGQDTLKLLVCLAALKKMGISP
KHLTFLKKTVDKEYLLSHNAVLPLRVRKDEGLLEHSFCELLNNMQVIQAI
LVSQVKKDFLQSSKSKIDPKDLASS
>TW788 putative serine/threonine-protein kinase
MSFDAGTVLGKRYRLIARIAIGGMGEVWKAHDEVIQRHIAIKILKEEYVG
SRDFIERFRTEARHAAIVNHVGIANIFDYGEEKGIAYLVMELVDGEPLSA
VLERERMLPVEEVLRIVVQISRALQAAHSAGLVHRDIKPGNILISESGLV
KITDFGIARIGDQVPLTTTGQVMGTVHYLSPEQAAGKKADAMTDVYSLGV
VAYECLTGKRPFVGDSQVAIAVAHVGDTPANLPKDIPRPVARLVLGCLEK
QPQRRPKSAGNLADAASALLKDDLAEAARAYPPLAASGEQNGSGQVLDNQ
TKAISTTTSLYSKLGQFDTRLLGQTMEFNGGSESKPARGKWVLPVVGTIT
ALAVIVGGGALAIIVTGNRGGLTETKTGVSTHDVTQTVASYIPTIVSPNT
RPAGNTVVIDPGKYVGLSFDGVQKALFALGVGIKRLSAGPAPSADKAGLV
ESISPTGTLTIPAVIDVKVYGPPVMTPPAFAPRLIGTPKIGGSVYVSWPV
YTSCPAGSQVTLYRISVDGAVLQGPGTVGADTTQVELLLIQNEASVKYSA
DCSVPGKNQTFNSGFSDVLKISTNGSHTPSIASSG
>TW742 conserved hypothetical protein
MSKKPSLPGKLFRVFIVFFCFLLLVSVGIAAYVYVDLSRAIKRNEAVDLG
GRKLPEDYKGAFNVLIVGSDSGGGDPRYKRGGENLADVTILVHVSADRTH
AEAVSIPRDTIVDIPQCTGANGTSLAAQKKVRFNSSLFRGGLGCTVKTAE
LLTGLNIEYAALLQFNSVIGITETIGGVPVCLKGPIKDKYTGLDLPAGLH
NISGQTALAFLRSRHSIGDGSDLSRIRSQQGFLSSMLRKIRKINFVAEPL
KAYSIFRTILSNTTLSTSLNSLEKLGGMLLATLKVKPGNFVFLRYPTRVV
GNVVYPVLQQAKALNEALLEDRPITLLGGKNNRLGVEITTPSAISETPSS
PTKQTESIPATTSPIGVEIQSIGQTGEDESCVVPYGE
>TW055 putative two component system response regulator
MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDL
IIMDVMLPDMSGFAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDD
YVTKPFSLDEILARVAAILRRTKIDDVDATIRVGDLVIDQNSNEVFLKGN
LIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVWDYDFDGDSSIVESYISY
IRRKLAAYSSETIIHTKRGFGYIMRTR
>TW057 cold shock protein B
MPLGTVRFYNKERGFGFVVSDDGESVFLPAKALPDGVSDLSPGTRVDYGA
ALGKKGSQVLSLRVLRKPPRRGVRSTDDMAVIIEDLMKILDEAGESFKRG
RYPKAERAKVLAAMLRQVADGLDAN
>TW130 putative helicase regulator
MTNAVIKDRTSHLLSALARTVREVEMSLVRKRIGPSSVMRFHAVALLLRQ
ERARVKSDPDITDTVRTELIRRLDGLAAVMVRIAARDTALMSIVTPDAPV
SDGALLYRRRLLSQIGVIDSDGESSEIREAAPPPPSLELYPQSVKMYHAT
HIFRPPGPDMESDLVPIIRLANWDLVGSVFKAFSQGGASVCKSLPAPSPF
LDRLAPDGLSMMPHQAGFVESARLGHRSFLLADEPGLGKTAQSLLAAGVT
NSFPLLVVVPNVVKLNWVREAKMWLPGRRATIISGDDLDAFADIFVINYE
MLDRHMLWMVDFGFAGMVVDEAHLIKNFSSQRSGNVLALAQHIRKKCCNP
LMIALTGTPVINSVEDFRALWLFLGWLAGPRGRDLSPVFVSELEKTGLTP
EDPGFSETVRDVMGHLGIVRRRKTQVAKDLPERMVVDLPVELDGDAFRSV
KNAEDDLADALYAQYISLKHLRIDDYQIRLKAVERFAVESKDSSALNIFS
IVRKIGITKAPLAIDFTIQMLDSVGKIVFFAKHIEVMNMAEEMFCQQGIR
SVSIRGSQTPNDRKNALRTFDEDPDTRVAICSLTAAGLGINLQVASNVVL
SELSWTAAEQGQAIDRLHRIGQTEPVTAWRILGAGTVDIRMAALVDSKSN
DAILSLDGGDMREVQQESLHIRSLLDLLDDRIRKAEQHVE
>TW558 glk, glucokinase
MVRAIGVDIGGTKISAALVDRSGNMDGQLTVPTDPVGVIDQVVELVNKLS
DGESVCAVGVAVASFLNYSRDFVYNSPNLGLENIPIRNLLQNRIKFPVFI
ENDANAAAWAEWRFAPRSVEIVNSQDLFMITVGTGVGGAAILDGKILKGG
FGIASEPGHIVLVPDGIPCGCGKRGCSEQYASGTALLRYVKSNMPDFPFG
RNPSDVIGELVAKSDPVVLSAVSQVADNVGRTAAAVTAILDPELFVIGGG
VSKIGTFFIDSIRESYKEYLPHSESRPCANFRLAHFYNTAGIIGAADLAR
SSLAT
>TW699 greA, transcription elongation factor GreA
MPNDSETWLSKEAHSVLVVELEELVTTGRKEIAKRIEQARSEGDLRENGG
YSAAKEEQARIEGRIQQLQDLLRHARVGQAPKARGVVEPGVVVTARIGGS
ERRFLLGNREIAHTSSLATYSESSAIGQAILGLKEGSEIECKSPTGALIK
VAILKVETYEGQ
>TW263 hrdB, RNA polymerase principal sigma factor hrdb
MPVKIKTQSRGSDKEAFAGAPSTSGASGAVLDEDLSTDPASHISAQATAS
DTDVASQGSEGDFEAIVLADTKDDESTPASPVISGATADPVKDYLKQIGK
VSLLTADEEVSLAKRIEAGLFAEEKLSESGDLAPKLKRELRWVVRDGQRA
KDHLLAANLRLVVSLAKRYTGRGMQFLDLIQEGNLGLIRAVEKFDYVKGF
KFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLSRVQRQLLQDLG
REPTPDELGRELDMPPERVVEVQKYGREPISLHTPLGDEGDSEFGDLIED
VDAVAPDDAVGFSMLQQQLRLLLDSLSEREAGVIRMRFGLDYDMPKTLDY
VGEYFDVTRERIRQIEAKTMAKLRHPSRSQCLRDYLG
>TW759 hspR, heat shock regulator protein HspR
MGTPQFFTVTVAAALSGMHPQTLRKLDRLGLLSPKRTLGGDRRYTAQDVE
GLRAISSMVSSGLTLEGIKHIARLEKELASLKAENHLLRQKLKNDRQGRI
FAAGQEIVTLEYGTRIKRGKALIVWREFHV
>TW124 ideR, iron-dependent repressor
MYLRTIVNLEEEGISPIIKARISERIGHTAPTVFQTIARMQRDGLLVVSS
NKSLILTSKGRKIALSVVRKHRLAEVLLHDVVGLEWEHIHLEACRLEHVM
SDHLEEHLRRILNNPSFTTYGTPIPPADSDFVEPFRDVISLSRAVIRQKA
RKLSVRCLGEIAQQDTILLSQLSKAGLRPGGLGSFMDSQNGILSWTNSGN
KFIISHYIAECIFVNQN
>TW589 mfd, transcription-repair coupling factor
MNLLAAIEAFIPTGFAATACPGGFSACKVASLVGDVDSLLVILPSEDACF
TDTLRTYLPESIILNFPEWDTLLHEQISPSPERVSARMEALHKISLFRKN
NKRAKNAQTSKTLHDIGILEDNLPTIHQKLVVVASIKAFMQPIISDGNPP
CLYFHTGGEYELSEIANILVAMSYSRTDLVGARGEFAIRGGILDIYPPTE
KHPIRIEFFGRQLESMRHFRVSDQRSIGPYVSNNAHVGMFAQYQDNSVCK
CNVSLSSNPHRCASHLSINNTYKPSAVMAPASEALIVYPTSEFPEEDQIN
NITPKSLLHFMPGKSTVVVIKCEQLTSKIEQLINTNREFSEAFCTPDAFS
ATNKYARNNHDGDNTLDGIAEKINYYTLEGLRHFAADLGIGWTDLSGFNS
EDEKSLITANPDFSGYSVFDHIRNLQKSGWQIVLASTNNRVYPTLDEYGI
DYLILSANTDYSSFEECRECSTRQESPQVMCTPSITQSCTHDRTGAQQKS
YISDLFFKQADPDAVDSGLIKHRVVVIDSYIQEGFSVPTKSFTLIGEHEL
FGKTTLQKAPRISRRAIDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDA
PEQEYLILEYAKNRLGVADKLYIPTDQLSMISKYIGSDRPTLSRIGGSDW
ALTKSRARKAISSIALDLVKLYSRRSITKGYAFSPDTPFQTHFENEFLYT
ETRDQEKTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNK
QVAVLVPTTLLARQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTICGIS
SGGIDIVIGTHMLLNKKIQFKDLGLLIIDEEHRFGVNHKEAIKKLKIGID
ILAMSATPIPRTLEMSLMGIKEISTLSTPPENRMPILTHVGPYRDKQVIA
AVRREIIRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERML
EKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLSQLHQLR
GRVGRGTKRAYAYLFYTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLEL
RGAGSLLGHAQSGHIASVGFDLYIRMVTDAISNFKGEQSRTNNLRLEIPV
DASIPKAYVDSERLRIELYKKISEALSDADIKDIGDEILDRFGNLPSQVI
NLLELARLRILASSRGIDLITLKSDFRQGGDVVTVSPVSFSDTAHQNLLR
DGQFSFICYRNSKLSACINRSSSEHSGYSEHSRQIINSIRHFIITSCN
>TW615 nusA, N utilization transcriptional termination/antitermination factor
MHMKIDLSVLRAVEREQRVAFDDLVRIAEQAVVMAYLRHTGLEDADLVKA
KLNRKTGEIDLRVKHDGDFIPYKSDAFSRMAATAAKRVITSKMRTLSDDS
TFARYKTKIGTVLSGVISQSTSQNFRMVSLDRRTEAILRPEEQIPGEEYP
HGKMVKVYVTDVTLGPRGSNVYVSRTHPGLINGLFLQEVPEIASGTVEIV
AVSREAGHRTKVSVRSNSKSTSAVGACVGEYGCRVRAVTSEICNEKIDII
SYSDDLGQYVANAISPATAADVFVLDSRQKVVRVYVSKEEYSLAIGKEGQ
NARLAARLTGAKIDIRIDE
>TW732 nusG, transcription antitermination protein NusG
MEKTDTAHDPYEEFKVHLRSLPGKWYVVHSPAGFERRAKANLETRVVSMN
ADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPGYVLVRMDLNESSWAVVR
NTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRSVTVSDVD
LEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQ
VEKQA
>TW811 parB, putative chromosome partitioning protein ParB
MGKGLDDLTPSAPADRGPIEAFFPSNSPFRFSGVINVPITDISPNPRQPR
KVFDPNSLSELASSIKEVGFIQPIVVRKTKLGYVLVIGERRLRAAKMAGL
SHVPAIVKTLDNRDMLRQALFENIHRAELNPIEEALAYSELLREFDVSQD
ELGQTLGKSRPYVTNTIRLLRLPPEVQDLLTKGKITPGHARPLLALENRA
EMIRLAKRIADAGLSVRQAEALITTSSPKRLFVAGSVRKGLDAAAASLGR
EFDTKVSVNIGQRKGKIVIEFTTVADLRRILLKMGVPPSGL
>TW195 recG, ATP-dependent DNA helicase RecG
MASLLAKEFGISRVIDLLTYYPRRYICRGKLTKLSELIPGDEVTIVGRVL
STEQRKTFSGANFLSVTLSDGENIIQLVFFHQPWRAENLKPGACGLFSGK
VTEFNNKKQLSHPEYELFSSEPTREQIQKWNEQIIPIYRACIACPSWKIA
RAVDLALEAVKGQTVDFMSGNYGYMSVEKAFYVIHHPTDNEELEAAKESL
RFFEAFLLQSALLHRKRFRNRASATPFIRKNGGFLERFDARLEFSQTNDQ
LRAADEIFEDLSLSEPMTRLLHGEVGSGKTLVAIRAMLLAADNDMQAVLV
APTEVLAKQHHRNLTRMLGHELCAEIQPSLLLGREKHTLRIASGRSKIII
GTHSVFSKKTVFHNLALVVIDEQHRFGVGQRDELLLKGDSPHLLMLSATP
IPRTVALSLLNFIAISEIKTPPSGKAEISTHVVPLAEKPQWGREVIRRIS
EEIQKGHQVFVVAPVIEQSRTGAASISALLRELEETPLLQGAKISRLHGK
LTAAECEKSMEEFSCGASDILLSTTMIEVGIDVPNATAMVIVSADRFGIA
QLHQLRGRIGRGNLPGVCLLVTNAPEGSAARSRLDLVARTHDGFSLAEID
MKMRREGDLLGLGQSGQGNYRLLRLDEDLQVLSDARLHAEGIMENDIKLE
KNKLLRLFLSQYLSGTNLSRLLS
>TW496 relA, GTP pyrophosphokinase
MHRSFVMKIANISLFSRLFSQYRTTGIDNILKVIAKHHPKADLSGVTLAY
KIASECHKGQKRYSGEEYISHPVAVAEILSDLGMGPNGVSAGLLHDTVED
TDFTIDQVSETFGQEVALLVDGVTKLDRMKYGVNVQSESWRKMIVAISKD
IRVLVIKLADRLHNARTWGFVPIESAKRKARETLEIYAPLSGRLGIQNIK
TELEDLSFMVLEPKIYQEILELVNKRSPRREKLINEVRSGIDDELKLLRI
RGKVSGRPKEIYSIYQKMVLRGHSFSDIQDLVAFRIVVPTLRDCYAVLGS
MHTRWTPMQGRFKDYIATPKSNFYQSIHTTVMLDGGFPVEIQIRTPEMHR
QAEFGIAAHWKYKEKLRSPTVAFRKTAALDHESVYISRIADWQESSDSNE
LLENMRYELSVKDIYVFTPAGKLVGLPAGSTPVDFAYAVHTEVGHRTVGA
KVNSSMVSLDTPLSTGDVVEVLTIKSANYSPNKNWLEFVKSTRARNKIKS
FFTKSRREEAIELGKNALLKCFRKRNVSVKYIQKRLPELLSSLRFSDIND
VYRAVGEGRLKALTVVDTLSKLIHDTVEDETSPIQVIRTDKPANEPSVLV
RGIHDILVRLARCCTPVPGDEIIGYVTRGTGVSVHIMTCGNISHMPEKDS
RLVKVEWSRSAQTKPFRVSIQIDGLNRPDLINDITKVFSEYRINILSANL
STNQHRASNKFVCEAYDVSRLEKVMSEIRKIDSVYDCYRA
>TW332 rho, transcription termination factor Rho
MSDGEDIRNLSLSKLRTLAIQRGIKSAYRYKKSDLLERLAAADKSVVDAA
DSPGESPITLDDLANAIPEGTPERQQTGDIRRVNEPDRVSITRERRGRSR
RRRIEEGILDSSQLVPIAGVLDVLDSCAFIRTTGYSPGDSDIYVSLSQVK
KYSLRKGDAVAGEVARVKSIDSYKQRHFPLVSVNTVNGLEFQQVTTRPAF
ESGMCVPPTRRLRITPKTAPVEKRIVDLVSPVAKGTRGLVRGPSKSGRTT
VLHEIAAGLCEQNKELHLITLLVGIRPEEATHMSRTLRGEVVVSSMECSP
EEQVGVAELVLERSKRLVEQGRDVLLIVDSMTHLGRAYALVGAPPSRLIG
SAAELSALRPITSFFLSARCIENSGSITMLATVLSESESAFDRLVEYDLV
AVSGMQLVLDKLASERRDFPAINPIRSSSRDEFTLLSASEQSEVKRLRVR
SEGS
>TW199 rnc, ribonuclease III
MRKFNLTLPPGLLRTAFVHKSFSFENGACQNNERLEFLGDAVLGLVVSHY
LFETCPEYTEGQLSAARSYIVSGTSIAQIAKELNLGQFMLLGKGEKLAGG
MDKTSLLADLLESLIGAVMVDQGFESARDFVLALVGEKLRQVGEFSVDDP
KTKLQKLTRTQLVYEVVTEGPPHSRTFKASVIVNEKRFFGQGSSKKQAQV
AAAMSALASLENKSS
>TW232 rpoA, DNA-directed RNA polymerase alpha chain
MLIAHRPTLIEKKVSDIRSRFIIEPLEPGFGYTLGNSLRRTLLSSIPGAA
VTSINIQGVMHEFSTIPGVKEDVTEIVLNVKRLVISSEIDEPFTVRLYKT
GEGEVLAKDIEVPTGIEIGNGDLVIATLAKDAVFDMQLTIERGRGYVSAE
QNRNDGMSLAGHIPVDSIYSPVHKVTYRVEATRAGERTDFDRLIIDVETK
PSILPRDAVASAGKTLCELFGLARELNSQAEGVEFGVDSMIPESDEDLRI
PIEDLGLSVRSYNCLKREGVNYVSELLGFSEQELLDIRNFGQKSADEVQE
KLAELGHSLKGSVPGFDGSYFDPNYGS
>TW081 rpoB, DNA-directed RNA polymerase beta chain
MFGVGFLAFAKGKRVCAIGRSSLGKISDPLEVPNLLDLQLDSFDWLIGGP
RWRAALDAYRKNPSGAPIAEKSGLDEVFDEISPIEDSAGNMQLNFSKPVL
EAEELSVRECRVRGRTYSAPLYVEAEFMNHDTGEIKTQTVFMGDFPLMTD
KGTFVINGTERVVVSQLVRSPGVYFERTPEKNSEKDLFSGRIIPARGAWL
EFEVDRHDQLGVRVDRKRRQPVIFFLRAIGMTDDEIRDAFGEFESISVQH
EKNIGLSRDDALREIYRRVRPGEQASAEAGRALLENFYFTSRRFDLARVG
RYKVNRKLGVDVDPTRMVLTRSDIIATIRYLAALHLGFSEVAVLNSNKSV
PISTDDIDHLGNRRIRPVGELVQNQLRAGLARMERVVRERMTTQDIEAII
PQTLINVMPIVAALKEFYGTSQLSQFMDQNNPLAGLTHKRRLSALGPGGL
SRERAGVEVRDVNPSHYGRMCPIETPEGPNIGLIGSLACYSRVNSFGFIE
TPYRRVVNGKVTDDIEYMTATQEDEHAIAQASTPLRPDNSFVDERVLVRR
KGGEVEVVPADQVDYMDVSGRQMVSVATSLIPFLEHNDANRALMGSNMQR
QAVPLLVTESPLVGTGMERYVAIDAGDVLIAEDPGIVGDVSADVVTVKQD
DGKHRDYHVGKFVRSNQGNCYNQRVVVRSGDRVEKGTVLADGPCTDKGEL
SLGRNLLVAFMPWEGYNFEDAIIISQNLVKDDTLSSIHIEEHEVSTRDTK
LGSEEITRDLPNVSMDYIKDLDERGIIRIGAEVGPGDILVGKVTPKGETE
LSAEERLLRAIFNEKSMEVRDTSLKVPHGQQGTVIDVKLFDAVDGEDKLG
AGINQRVVVYIAHKRKITEGDKLAGRHGNKGVISKILPVEDMPFMADGTP
VDIILNPLGVPARMNFGQVLETHLGWISKQGWKIEGDPDWAKDIRVREAQ
PDSRVSSPVFDGISEGEITGLFSSVFPNRDGERAVGSDGKAILYDGRTGE
PFPEPISVGYMYVLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQR
FGEMEVWALEAYGAAHALQELLTIKSDDVVGRVKVYDAIVKGYPIPTPGV
PESFKVIVKEMQSLCINIEVVSDGEDDVSADAETLQIEEGLDTSPKVEVG
SLEEV
>TW082 rpoC, DNA-directed RNA polymerase beta' chain
MATTEDIRRWSYGVVKKPETINYRTLKPEKDGLFGEQIFGPTRDWECGCG
KYKRSRYRGVVCERCGVEVTQSSVRRERMGHIELAAPVTHIWYFKGVPSR
LGYLLDIAPKDLDKVIYFAAYMVVSLDEEGRKEDLQDLENELRLDIKQLR
DACDASIASAVSELERTITELQDAKTSASRINKVRSEAENKMANIRREYD
DKIEHLERVWDSFKALKVGGLYAEDDVFRDVQDRYGDYFDACMGAEAIKR
RLEDFDLQKTAQELGVQIVECRGQRKVRAIKRLRVVNSFITSKANPACMV
LDVIPVIPPELRPMVQLDAGRFAASDLNDLYRRVINRNNRLKRLLDLGAP
RIIVNNEKRMLQEAVDALFDNGRRGRPVSGTNNRTLKSLSDMLKGKSGRF
RQNLLGKRVDYSGRSVIVVGPTLQLHQCGLPKLMALELFKPFIVKRLLDL
ALAPNIRSARRMIERGDPAVWDMLDAVIKARPVLLNRAPTLHRLGIQAFE
PQLVEGKAIQLHPLVCAAFNADFDGDQMAVHLPLSLEAQAEARVLMLASN
NILNPSDGRPVTLPSHDMIIGLYHLTTVKPSAKGAGRAFSSVAEAIMAKD
RGDLSISAPVKILFSNIVLDGKTLDSAVVETTLGRAIFNEALPDGHPYIN
ELVDKQVISSIINNLAEVYSKVEVANTLDKIKSVGFHWATRSGVTVAISD
VVSPPEKQEIISKYETQARGVQQDFEIGLLTDLERRQALVSIWSEATDRV
AEAMRKCFPDDNTINTMVTSGARGNWLQVRNIAGMRGLVANPKGETIPRP
IISSYREGLSVTEYFISTHGARKGLVDTALKTADSGYLTRRLVDVAQDVV
VRERDCGFTRGVRMPVTFRGDDGELHKVENAEHSVYGRTLAEDVKTPDDN
LIAKAGEDISGIMIDSFIAAGVESVEVRSVLTCRSKVGVCSACYGRSLAT
GARVDIGDAVGIVAAQSIGEPGTQLTMRTFHSGGSASAVDITQGLPRVQE
LFEARTPRAAAPIAEADGTVSIEDGDRARRLILKSDNNEEFSYTVLKRAQ
LRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQG
VPIHNKHIEVIVRQMLRKVTVVDHGDTSMLPGELIDQSRYQELNREAQAE
GRKTASARQEVTGITKASLATESWLSAASFQETTRVLTQAVISGRRDPLI
GLKENVIIGNLIPAGTGLSVYRDVEPEPRPEAISRMYPTRRPEIENLLEG
DSVDPEFDFSSLTQGLELPDDYPVQ
>TW407 rpoZ, DNA-directed RNA polymerase omega chain
MEEDRGIADPPLDSLLSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYA
HVGPLVSVDADDKSLTVAMREIAEDKLDLKSSAAE