Gene list
Applied filters:
COG category: Transcription
Gene type: CDS
Genomic element: chromosome
Number of genes found: 28
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Tropheryma whipplei TW08/27, TW08/27 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | TW535 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 572506 | 678 | - | 0.432153 |
NA | TW534 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 571987 | 477 | - | 0.484277 |
NA | TW130 | putative helicase regulator | SubName: Full=Putative helicase regulator; | chromosome | CDS | 134760 | 2073 | + | 0.485769 |
NA | TW057 | cold shock protein B | SubName: Full=Cold shock protein B; | chromosome | CDS | 47266 | 378 | + | 0.505291 |
NA | TW071 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 62354 | 294 | + | 0.408163 |
NA | TW742 | conserved hypothetical protein | SubName: Full=Putative uncharacterized protein; | chromosome | CDS | 838028 | 1164 | + | 0.480241 |
NA | TW055 | putative two component system response regulator | SubName: Full=Putative two component system response regulator; | chromosome | CDS | 46318 | 684 | - | 0.476608 |
NA | TW533 | conserved hypothetical protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 571543 | 444 | - | 0.472973 |
NA | TW421 | putative CarD-family transcriptional regulator | SubName: Full=Putative CarD-family transcriptional regulator; | chromosome | CDS | 459221 | 483 | + | 0.484472 |
NA | TW165 | putative serine/threonine protein kinase | SubName: Full=Putative serine/threonine protein kinase; | chromosome | CDS | 203335 | 1197 | + | 0.444444 |
NA | TW788 | putative serine/threonine-protein kinase | SubName: Full=Putative serine/threonine-protein kinase; | chromosome | CDS | 892514 | 1758 | + | 0.506257 |
glk | TW558 | glucokinase | SubName: Full=Glucokinase; EC=2.7.1.2; | chromosome | CDS | 594860 | 918 | - | 0.461874 |
greA | TW699 | transcription elongation factor GreA | SubName: Full=Transcription elongation factor GreA; | chromosome | CDS | 791384 | 489 | + | 0.501023 |
hrdB | TW263 | RNA polymerase principal sigma factor hrdb | RecName: Full=RNA polymerase sigma factor SigA; | chromosome | CDS | 296144 | 1164 | + | 0.512028 |
hspR | TW759 | heat shock regulator protein HspR | SubName: Full=Heat shock regulator protein HspR; | chromosome | CDS | 856754 | 393 | - | 0.493639 |
ideR | TW124 | iron-dependent repressor | SubName: Full=Iron-dependent repressor; | chromosome | CDS | 130688 | 654 | + | 0.448012 |
mfd | TW589 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 662858 | 3747 | - | 0.430478 |
nusA | TW615 | N utilization transcriptional termination/antitermination factor | SubName: Full=N utilization transcriptional termination/antitermination factor; | chromosome | CDS | 700744 | 960 | - | 0.489583 |
nusG | TW732 | transcription antitermination protein NusG | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 826165 | 618 | - | 0.459547 |
parB | TW811 | putative chromosome partitioning protein ParB | SubName: Full=Putative chromosome partitioning protein ParB; | chromosome | CDS | 919509 | 876 | - | 0.505708 |
recG | TW195 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 232840 | 2022 | + | 0.472799 |
relA | TW496 | GTP pyrophosphokinase | SubName: Full=GTP pyrophosphokinase; EC=2.7.6.5; | chromosome | CDS | 533898 | 2223 | - | 0.442195 |
rho | TW332 | transcription termination factor Rho | SubName: Full=Transcription termination factor Rho; | chromosome | CDS | 364090 | 1365 | + | 0.497436 |
rnc | TW199 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 237204 | 648 | + | 0.458333 |
rpoA | TW232 | DNA-directed RNA polymerase alpha chain | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 257011 | 984 | + | 0.474593 |
rpoB | TW081 | DNA-directed RNA polymerase beta chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 73945 | 3468 | + | 0.504614 |
rpoC | TW082 | DNA-directed RNA polymerase beta' chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 77472 | 3828 | + | 0.490073 |
rpoZ | TW407 | DNA-directed RNA polymerase omega chain | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 445147 | 258 | + | 0.457364 |