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Gene list

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COG category: Translation, ribosomal structure and biogenesis
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 15

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# Photobacterium profundum, ss9

>PBPRA3436 putative ribosomal protein L11
MAKKVEAYIKLQVAAGAANPSPPVGPALGQHGVNIMEFCKAFNARTDSVE
KGLPTPVVITVYSDRSFTFITKTPPAAVLLKKAAGVKSGSGRPNTEKVGT
VTDAQVQEIAETKAADMTGADIEAMKRSIAGTARSMGLVVEG
>PBPRA3488 putative D-tyrosyl-tRNA(Tyr) deacylase
MIALIQRVSEASVTVDGQVTGTIGKGLLVLLGVEKEDDESKTKRLRDKVL
GYRIFEDDAGKMNLNVQQAGGSVLVVSQFTLAADTKSGMRPSFSVGAAPA
DAERLYDYFVECCKDKDIQTETGIFAADMKVALLNDGPVTFWLQV
>PBPRA3542 putative ATP-dependent RNA helicase, DEAD boxfamily
MKTTHITEQKFADLGLEPTVLEGLDAQGFHYCTPIQALALPVVLTGQDIA
GQAQTGTGKTLAFLTATFNYLLLNPASDERKTNQPRAIIMAPTRELAIQI
YNDAAPLLASTGLKAGLAYGGEAYEKQQKVFAEGVDILIGTCGRIIDFYK
QRVIDLASIQVVVLDEADRMFDLGFIKDIRFLFRRMPAPKARLNMLFSAT
LSYRVKELAFEHMNSPESVVVEPNQKTGHLIQEELFYPSNQEKMRLLQTL
IEEEWPDRAIIFANTKHRCEDIWGHLAADNHRVGLLNGDVPQKKRVRILE
QFTQGDIDILVATDVAARGLHIPQVTHVYNYDLPDDAEDYVHRIGRTGRA
GESGSSISFACEEYAINLPAIETYIEHPIPLSKYNSEALLDELPAPLRLQ
RTPRQGGNRRPNGNRQGQGQSRPRNNNRRHPQSQKQQ
>PBPRA3409 putative ribosomal protein L11 methyltransferase
MLKFHARISPLCSNRSQIISELTMPWIQIKLNATAENAEAIGDMLMEETG
ALSATFLDAQDTPVFEPMPGETRLWGDTDVIGLYDAEADMDFVLNMLKNS
PLIAEDFAYKIEQLEDKDWEREWMVNFHPMRFGRRLWICPSWREAPEPNA
VNVLLDPGLAFGTGTHPTTSLCLEWLDGQDLVGKTIIDFGCGSGILAIAA
LKLGAEKVIGIDIDPQAIQASRDNAERNGVSDKLALFLPQDQPTDVQADV
VVANILAGPLRELSPVIKSLVKPGGKLAISGVLEIQAEDVSTYYSDELAL
DPVVARDEWCRISGYKA
>PBPRA3580 Putative Methionyl-tRNA formyltransferase
MSKPLRIVFAGTPDFAARHLAALLSSQHEVIAVYTQPDRPAGRGKKLTAS
PVKNIALENDLPVYQPASLRNEDAQQELAALKADIMVVVAYGLLLPKFVL
DTPKLGCINVHGSILPRWRGAAPIQRSIWAGDEETGVTIMQMDEGLDTGD
MLTIATLPIEPTDTSATMYDKLAGLGPNALIDCLSEISAGTAIAEKQNDE
LANYAKKLNKEEAKIDWAMEATAIERCIRAFNPWPMSYFAVAEQNVKVWH
AVVEAENQGKAPGTILSADKQGITVATGKGALRLIELQPPGKKAMKAQDI
LNSRREWFELGTQL
>PBPRA3579 EBIG1350, Putative polypeptide deformylase
MSLLQVLIFPDERLRTIAKPVEAITPDIQNIVDDMLETMYDEEGIGLAAT
QVDIHQRIVVIDISEERDQPMVLINPEITDKRGEDGIEEGCLSVPGSRAL
VSRAAEVSVKALDRDGNPFSFEADDLLAICVQHELDHLAGKLFVDYLSPL
KRQRIKQKLEKMKRFNEKD
>PBPRA3465 PLU4736, putative tRNA (uracil-5-)-methyltransferase
MTSTALNTAGYQQQLDEKAERIQNIFEDFETPELEVFASPAEHYRMRAEF
RMWHEGEDLYYVMFNQETREKYRVDQFPAASRLINDLMPLLVEALKPSQT
LRHKLFQVDFLSTLSGEILVSLLYHRQLDEEWEVEIKKLKQCLNDEGFNL
NIIGRARKMKIVADRDYVIEKLNVFDQTLTYKQVENSFTQPNGEVAQKML
EWAVDCTQDSDGDLLELYCGNGNFSLALAKNFERVLATELAKPSVESAQY
NIAVNNIDNVQIVRMSAEDFTDAMAGKREFRRLKAQNVDLQSYNCNTIFV
DPPRSGMDEGTCRMVQGYERIMYISCNPDTLKENLEILSQTHKITRFALF
DQFPYTHHMEAGVLLERK
>PBPRA3435 RPLA, putative ribosomal protein L1
MAKITKRMRVIRDKVDATKSYDINEAVVLLKELATAKFVESVDVAINLGI
DARKSDQNVRGATVLPHGTGRDIRVAVFTQGANAEAAKEAGADLIGMDDL
ADQVKKGIMDFDVVIASPDAMRVVGQLGTILGPRGLMPNPKVGTVTPNVA
QAVKNAKAGQVRYRNDKNGIIHTTIGKVDFDAAQLKENLESLLVALKKSK
PSSAKGIFIKKISISTTMGAGVSLDQGTLEASI
>PBPRA3434 RPLJ, putative ribosomal protein L10
MLTVSGVMTGATQQKIQELYPMALNLQDKKAIVAEVNEAANGALSAVVAD
SRGVAVGAMTSLRKQARENGVYLKVVRNTLARRAVEGTDFECLKDVFVGP
SLIGFSNEHPGAAARLFKDFAKENKDFEFKAAAFEGAVVDAEVLATLPTY
DEAIARLMMCMKEASAGKLVRTIAAVRDQKEEAAA
>PBPRA3483 SF3418, putative heat shock protein 15
MSHKSSNSDPLQVRLDKWLWAARFYKTRSIARNMIDGGKVHYNGQRSKPS
KTVEVGAEVRIRQGNEEKTITIEKLSTVRRGAPEAQTLYEETTESLKLRN
QNAEMRKLNAFGSPSPEKRPDKKQRRDIIKFKNINE
>PBPRA3439 SO0217, putative GTPase-translation elongation factor
MPCLEGLSMSKEKFERLKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGG
DAKDFASIDNAPEERERGITISTSHVEYDTPARHYAHVDCPGHADYVKNM
ITGAAQMDGGILVVAATDGPMPQTREHILLGRQVGIPYIIVFMNKCDMVD
DEELLELVEMEVRELLSEYDFPGDDCPVIMGSALGALNGEAQWEEKIIEL
AEALDNYIPEPERAIDLPFILPIEDVFSIQGRGTVVTGRVEQGIVRIGEE
VAIIGIKETTTTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQV
LAKPGSITPHTTFESEIYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGTI
ELPEGVEMVMPGDNIQMKVTLIAPIAMDEGLRFAIREGGRTVGAGVVAKI
FE
>PBPRA3433 SO0223, putative ribosomal protein L7/L12
MLISKRIVMSITNEQILDAVADMSVMQVVELIEAMEEKFGVTAAAAVVAG
GAAAEAAEEQTEFDVILTAVGAQKVQVIKAVRGATGLGLKEAKAVVDSAP
ASVKEGVDKAEAEALKAQLEEVGASVEIK
>PBPRA3581 T4096, Putative Sun protein
MNVRAAAAQVVFQVVDQGQSLSAALPAAQQNIRERDHALLQEICYGVLRW
LPRLESITTHLMDKPLKGKQRAFHHLILVGLYQLGHMRIPAHAAVAETVN
ATKDLKKTQLRGLINAILRNYQRQQEQLDAQSVSHDAGKYGHPSWLLKML
KASYPEQLEAIVTANNTKAPMWLRVNRQHHTRDEYRALLNDVGIETDLHP
EAADALRLLSPCDVSKLPGFADGWSSVQDGAAQLAVDFLQPQAGELILDC
CAAPGGKTAHIMERQPTAKVVAIDCDERRLTRVYENLARLKLDATVLCAD
ARYPADWWHGEKFDRILLDAPCSATGVIRRHPDIKWLRRASDIEALAILQ
AEIFDAMWLQLKSGGTLVYATCSITPQENSEQVKAFLARTADATLINRGQ
EADSDMEHPGRQILPGESDMDGFYYAVLQKS
>PBPRA3410 VV3138, putative Dihydrouridine synthase
MQIGPYQLNNQLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSSNPDLWK
TAKSQNRMVHEGESGIRSVQIAGADPKLMAEAAQFSVENGAQIIDINMGC
PAKKVNKRLAGSALLQHPALIEEILRSVVGAVDVPVTLKTRTGWDLDNRN
CVDIAKIAEQCGIQALALHGRTKSCMYKGEAEYDYIRAAKQAVSIPVIAN
GDIDSPEKARFVLDYTGADALMIGRPAQGRPWIFREIQHYLTTGEYLPAP
SMDEVSGIMLGHVQELHRFYGEYLGLRIARKHVSWYLKEHAPAGDFRRSF
NALEDAQEQIDALQGYFENVA
>PBPRA3573 YRDC, Putative Sua5/YciO/YrdC family protein
MVIYEVDMDNLQQVVSALQSGEVIAYPTEGVFGVGCDPDNPQAVEKLLAL
KQRPIEKGLILIAANYQQLQPYIDDAQLSDLQKQKIFSTWPGPVTWVMPV
KKDISPLLTGKFTSIAVRVSDHPLVQKLCHQFGKPITSTSANLTGLPPCK
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