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Gene list

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COG category: Translation, ribosomal structure and biogenesis
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 19

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# Photobacterium profundum, ss9

>PBPRA3138 putative glutathione synthetase
MIKLGIVMDPIESINIKKDSSFAMMMEAQRRGWEIHYMEMNDLSLEQGKA
VARTRVVSLKEDPNGWFEFQSEQEIALSDLDAVLMRKDPPFDTEYIYATY
ILERAENEGALIVNKPQSLRDCNEKLFTAWFPELTPTTLVTRRADKLKAF
HQEHGDVILKPLDGMGGSSIFRVMKGDPNVSVIIETLTAMGTTYCMAQTF
VPDISNGDKRILVVDGEPMPYCLARIPAKGETRGNLAAGGRGEARPISET
DRKIAETVAPVLKEKGLIFVGLDVIGDKLTEINVTSPTCIREIEAAFDIS
ITGKLMDAIERRLKK
>PBPRA3377 putative lysyl-tRNA synthetase-related protein
MSQPWQPTASIKQLKQRAAVLSSIRDFFAGKEVIEVDTPAMSQATVTDVH
LHTFQTEFVGPGYAGGQTLYMMTSPEFHMKRLLSAGSGPIYQICKSFRNE
ESGRYHNPEFTMLEWYRPDFDHHDLMNEMDELLQLVLQCDKAERMSYQQA
FIQELGVCPLEGTMEQLKGVARTLGLADIADPEQDRDTLLQLLFSMGVEN
KIGQQVPAFVYDFPASQAALAQINPTDNRVAERFEVYFKGIELANGFHEL
ANGDEQLVRFEQDNMKRISMGLKPQPIDLHLIEALRAGFPDCAGVALGID
RLIMLALKLDHIDQVTAFPIDIA
>PBPRA3067 putative alanyl-tRNA synthetase
MFYNDRQKFYLSPILSLKGDNSGFYKASIQDFPMYMSTDEIRRAFLAFFE
SKGHQIVESSSLVPANDPTLLFTNAGMNQFKDTFLGIEKRSYTRATTAQR
CVRAGGKHNDLENVGFTARHHTFFEMLGNFSFGDYFKQDAIKYAWEFLTD
VLGLPQDRLLVTIYETDDEAFDIWNKEMGIPADRIVRIGDNKGAPYASDN
FWQMGDTGPCGPCSEIFYDHGEHIWGGRPGTPEEDGDRFIEIWNNVFMQF
NRQADGTMEPLPKPSVDTGMGIERIAAIMQGVHSNYEIDIFQTLIKKSAE
VIGYEDLSNQSLRVVADHIRSCAFLIVDGVMPSNEGRGYVLRRIIRRAVR
HGNKLGASGAFFYKLVGPLAEIMGTAGDELKKRQALVEKILKIEEDNFGR
TLDRGLTILNDALDNLSGKELDGETVFKLYDTYGFPADLTNDVARERDFT
IDEEGFNNAMEAQRQRAREAGKFGVDYNESIKVDVNTEFCGYTGTAAQSS
IVALYRDGEAVDSILAGEDALIILDNTPFYAESGGQCGDAGVLTAENTVF
NVSDTQKFGAAIGHQGSLVQGALNVGDKLEAQVDVVRRTAITLNHSATHL
LHSALRNLLGEHVAQKGSLVKPDALRFDFSNLEAVKPEQLREIERVVNEQ
IRLNHSIDTNIMDIESAKQKGAMALFGEKYDDEVRVLSMGEFSTELCGGI
HAKNTGDIGLFKITSEGGIAAGIRRIEAVTGAAAIDALHAQEALLSETAS
IVKSDAASVATKVSALLAHSKQLEKDIQQLQDKLAAQESAGLLDQAKEIN
GVKVLITQLDGADNKALRGMLDEIKNKLGSGIVVLGNVSGDKVGLIVGVT
KDLTGKVKAGELVNMVAQQVGGKGGGRPDMAQAGGTDAAALPAALESVTP
WLTEKL
>PBPRA3169 hypothetical protein
MGLPPKTNEKNDGNLKPFQQLYRLKNTVAAEVQGKPVINNNLHITLAFIG
AVNQQQKQQLIANVNRLIAPQAFSISCSGLHYWSRSKVVWLDCHAYHPVY
QQPHQQPSAALQTLVSLLQQAVDHSTHCAGIPSASNQASASGYIPHITLC
KKVTSRPHLSSLPQQLDFHFQHFGLYISETIKTAHGSDVQYRCLQQWALA
AAHFNNGSY
>PBPRA3236 putative 30S ribosomal subunit protein S9
MGIMTMAENQYYGTGRRKSSAARVFIKPGTGKIVINKRSLEVYFGRETAR
MVVNQPLVLLDMVDKFDLNITVKGGGITGQSGAIRHGITRALMEYDETLR
PTLRSAGYVTRDARKVERKKVGLRKARRKPQFSKR
>PBPRA3386 CBU1602, putative ribosomal protein S6 modification protein
MKIGILSQNETLYSTRRLREACEARGHEAVIINALRCYMNINSVQPSIHF
EGNDLTGFDAIIPRIGADITFYGCSVLRQFEMMDVFSVNQSIAISRSRDK
LRSLQLLSRKGVGMPITGFASKPDDVPDLIKMVGGAPLVIKLLEGTQGIG
VVLAETQTAAESVIEAFMGLKANIMVQEYIKEAGGADIRCFVIGDKVIAT
MKRQAADGEFRSNLHRGGSASLVRITPEERKTAVAAAKAMGLSVAGVDLL
RSERGPLIMEVNSSPGLEGIEAATEKDIAGMIIEYIEKNAAKKNRRHLQY
Q
>PBPRA3382 HD1407, putative elongation factor P
MCKRIEMASFSTNEFRSGMKIMLDNEPCVIIENEFVKPGKGQAFSRVKIR
KLLSGKVLEKTFKSGESVEAADVVEVELDYLYNDGEFYHFMDNVSFEQIA
ADVKAVGDNAKWLVENNTCTLTLWNGNPIIVTPPNFVELEVTETDPGLKG
DTQGTGGKPATLITGAVVRVPLFIQIGEVIKADTRSGEYVSRVK
>PBPRA3237 RPL13, putative 50S ribosomal protein L13
MKTFVAKPETVKRDWYVVDAEGKTLGRLATQIASRLRGKHKPEYTPHVDT
GDYIVVINAEKVAVTGAKRTDKMYHHHTGFIGGLKSISFEKLIDKKPEMV
IETAVKGMLPKGPLGRAMYRKLKVYAGTEHNHAAQQPKVLDI
>PBPRA3336 RPLI, putative Ribosomal protein L9
MQVILLDKIGNLGSLGDQVNVKSGYARNFLIPQGKVVMATKANVEMFETR
RAELEAKVAEQRAASEARAEKLSALDAVVIASKAGDEGKLFGSIGTRDIA
DAITAAGEAVVKSEVRLPEGALRNIGEYEVSIQLNSDVFAKVNLTIVAAE
>PBPRA3337 RPSR, putative ribosomal protein S18
MARFFRRRKFCRFTAEDVQEIDYKDVVTLKNYITEAGKIVPSRITGTRAK
YQRQLARAIKRSRYLALLPYTDKHL
>PBPRA3173 S0138, putative polyA polymerase
MQVFQRQEHGISRKDISENALKVLYRLNKGGYDAYLVGGGVRDLLLHKQP
KDFDIATNATPEEIKSLFRNCRLIGRRFRLAHILFGRDVIEVATFRGHHS
DVPAKVEIKDKADEKGKQQVSSKSQEGMLLRDNVYGTIDEDAERRDFTIN
AMYYSAKDFTVTDYANGVEDLNNRIVRLMGDPETRYREDPVRMLRAVRFA
AKLDMTIEEKTAAPIEELAPLLRDIPSARLFEESLKLLQAGQGLATYKLL
RQYNLFQQLFPILADHFTEDHSSQTEQMIEHILAATDKRIAEDKRVNPAF
IYAAMLWYPLTTRAEEISFASGLAFYDAFMVAANDILDEQVRSIAIPRRH
TTTVRDIWQQQIRFSRRSGKRAFKMMEHPKFRAAYDFMEMRSHFEGDDIV
ELTSWWNEFQNSDRPLRGKMVQEVNDDGGRRPRRRRPQRRKKPQAKTSS
>PBPRA3266 SO4094, putative ribonucleases G and E
MSIELLINVTPSETRVAMIESGNLQEVHIERESKRGIVGNIYKGRVSRVL
PGMQAAFVDIGLDKAAFLHASDIVPHTECVAENEKKQFQVLDISELVRQG
QDIVVQVIKDPLGTKGARLTTDVTLPSRYLVFMPGASHVGVSQRIESEEE
RERLKKIVKYHCDDLGGFIIRTAAEGASEDELGQDAAFLKHLWRKVIERR
IKLKPKSMLYGELGLAQRILRDFVGTELDRIQVDSRLGFEKLKEFTEEFV
PEVNDKIDYYAGEQPIFDLFDTENEIQRSLDRKVELKSGGYLIIDQTEAM
TTVDINTGAFVGRRNLEETIFNTNIEATKAIARQLRLRNLGGIIIIDFID
MAIEDHQRRVLATLEQALSFDRVKTNINGFTQLGLVEMTRKRTRESIEHV
LCGTCPTCEGRGTVKTVESVCYEILREITRVNRAYDADRFVVYVSPAVGD
VLAGDEYHALAELEVFIGKQVKVKPEPLYIQEQFDVVMM
>PBPRA3172 STY0210, putative glutamyl-tRNA synthetase-relatedprotein
MGIFSRLQSLFNVFMTTDTHYVGRFAPSPSGPLHFGSLIAALGSYLQARS
QQGKWLVRIEDLDPPREIRGAADDILRTLEAYGLTWDGSVMYQSQRHGAY
QDQIDQWLHGGDAYYCQCTRKQIKTAGGFYPGTCRHLHRSAENSAVRLNV
DTPITYFVDRLHGQIDIPATLAQEDFIIRRRDGLYAYNLAVVLDDIEQNI
TEVVRGADLIEPTGRQIGLYRQLQHPEVSYLHLPLAVTDNGNKLSKQNHA
PAIDKSHPVPALIAAMSFLGMTPPATLIKEELKDVLQWGINAWCIDNLPK
MTEIILTKTH
>PBPRA3256 T3238, putative sigma-54 modulation protein
MSMQINITGHHVEVTQALREYVTTKFDKLERFFDKINNVQVILTVDKLHQ
IAEATLHINGGEIHAKADSENMYAAIDSLTDKLVRQLNKHKDKLNSH
>PBPRA3083 VP2566, putative TrmA family RNA methyltransferase
MSQNTMARFFKPQKRKITDTKHKEIVINRLDHLGAGIGHLNNKSIFVDGL
LPGEKALVQITDDKKQYARAKVIKRLIDSPARIKPHCPIYDQCGGCNLQH
LSHQGQVLAKQQALSDLMVKFAGDQQVAVDKQRAGDQQRALFEQVTPIIA
AEHHYRRCARFSVLLGKDGQLQFGLRKKQSKDIVNVKQCPVLAESLNELL
PPLRSLLSTLKGQRHLGHIELIEADNGRVVLIRHLKPFSDKDMTLILNFA
QEQNVILFLAPTSDDIELIHGETPYYRLDDLTLHFSPKDFIQVNRDVNKK
MVEQATDWLDLQPSDRVLDLFCGLGNFSLPLAKHAKAVVGVEGIDEMVHR
ATENAMCNKQNNATFYQANLDEDVTKLAWAREPFNKILLDPARAGAAGVM
EHVVKLKPERVVYVSCNPATLARDSQVLLKKGYQLERLGMLDMFPQTGHL
ESMALFVKAKAVKKKRVVTKL
>PBPRA3325 VV2972, putative NifR3/Smm1 family protein
MVTDALLNNQNDEIKTQDNSGYPMQRFSVAPMLDWTDRHCRYFHRLLSDN
ALLYTEMVTTGAIIHGKGDFLTFNEEENPVALQLGGSNPVDLAHCAKLAQ
ERGYDEINLNVGCPSDRVQNGRFGACLMGEADLVALCVSSMREVVDIPVT
VKTRIGIDEQDSYQFLVDFIGTVNEKSGCDNFTVHARKAWLKGLSPKENR
EIPPLDYPRVYQLKRDFPNIIMAINGGIKTFDEMEEHLKHMDGVMVGREA
YQNPYLMAEVDQRLFGSSKPIIKRREAAEAMFPYIERQLANGSKLGHITR
HMLGLFQGIPGGRQWRRYISENAHKPGSGIEVVQRALEKISNDLDV
>PBPRA3339 VV2984, putative ribosomal protein S6
MRHYEIVFMVHPDQSEQVAGMIERYTGSIKDSGGQIHRLEDWGRRQMAYP
INKLHKAHYVLMNIEAEQSVVDELESTFRFNDAVIRNMIMRAKNAVTEPS
PMMKAKEERFTKRDDREERSDRSEAPRAEAPAKAEAPAKAEDEAAAE
>PBPRA3351 VV3072, putative tRNA delta(2)-isopentenylpyrophosphate transferase
MSKPLPQAIFLMGPTASGKTDLAIRLREQLPVELISVDSALIYKGMDIGT
AKPDERELSLAPHRLLDIRDPAQSYSAGDFRTDALKEMADIVAEGRIPLL
VGGTMLYYKALLEGLSPLPASDPDVRAGIEREAQEKGWHFLHEELVRIDP
VSGARIHPNDPQRLSRALEVFRISGKTLTELTKIQGEPLPYRVHQFAIAP
KDRAVLHQRIEQRFEKMIEAGFEQEVRALYQRGDLHPDLPSIRCVGYRQM
WDYLGGNCDLDEAVFRGVCATRQLAKRQITWLRGWKDLTWLDSNDGDAAL
QTVTNSIRCDV
>PBPRA3340 YJFH, putative RNA methyltransferase, TrmH family
MSNDMIFGIHAVKAVLATDPVRLIEVFVLKDRQDDRLMPLLTELKDLGIT
IQHAGRKALDDKAKGASHQGIIARVKPAKQLNEHDLDTILEGSENPLLLI
LDGVTDPHNLGACLRNADAAGAVAVIIPKDRAAQLTATASKVACGAAEVM
PLVRVTNLARTMRALQDKGVWIVGTAGEATHDIYHSKLTGPLAIVMGAEG
EGMRRLTRETCDDLIKIPMAGSVSSLNVSVATGICLFEAVRQRQI