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Gene list

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COG category: Translation, ribosomal structure and biogenesis
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 25

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# Photobacterium profundum, ss9

>PBPRA0612 putative initiation factor IF-2
MSEVTVKALAEEVGTPIDRLLQQFSDAGISKKAEDNVSQTEKQSLLSHLQ
KEHGGESTDGTPTRLTLQRKTHSTLSVAGTGGKSKSVQVEVRKKRTFVKR
SALEEEQRAADNAKQEAEETAQREAENVAKRKEDVRLAEEKAKRDEENKA
KRNTEDTVKREATDKRKAEEKAKRTVAVKQAKSETELLQLRREEEAKRKA
EEDSQRQLEEARKMAETNEKNWSATEQNVTANMEKSDYHVTTSTHARAAE
DEQDRKEETTGTRRKKKPAAKKADDRKGRGGRNQRNQRGGRGKQKPQVNA
PTSMQQGFDKTATVAKSDVVIGETIVVSELANKMAVKATEVIKAMMKMGA
MVTINQVIDQETAALVAEEMGHKVIFRKENELEEALMSDRGETQAVESRA
PVVTIMGHVDHGKTSTLDFIRKAHVASGEAGGITQHIGAYHVEIGNGMIT
FLDTPGHAAFTAMRARGAQATDIVVLVVAADDGVMPQTVEAIQHAKAAGV
PLIVAVNKIDKDGANPDNVKNELAQYDIIPEEWGGENIFVHISAKQGTNI
DGLLEAILLQSEILELTAVKEGMASGVVIESRIDKGRGPVATVLVQSGTL
RKGDIVLCGLEHGRVRAMRDENGKDIESAGPSIPVEILGLSGVPAAGDEA
TVVRDDRKAREVALYRQGKFRDVKLARQQKSKLENMFSHMEAGEVAECNV
VLKADVQGSIEAIADSLMKLSTDEVKVKVVGSGVGGITETDAVLAAASNA
IILGFNVRADVPARRMIENENLDLRYYSVIYQLIDEVKAAMGGMLAPEFR
QEIIGLAEVRDVFKSPKIGAIAGCMVTEGTIKRNNPIRVLRDNVVIYEGE
LESLRRFKDDTNEVKNGYECGIGVKNYNDVRVGDQIEVFEIIEIQRTLD
>PBPRA0625 putative peptide chain release factor RF-3
MSFLQEVGKRRTFAIISHPDAGKTTITEKVLLFGNAIQKAGTVKGRGSNQ
HAKSDWMEMEKERGISVTTSVMQFPYNDCLVNLLDTPGHEDFSEDTYRTL
TAVDSCLMVIDAAKGVEDRTRKLMEVTRLRDTPIVTFMNKMDREVRDPME
VLDEVENELKMACAPISWPIGCGKEFKGVYHIHRDETILYESGHGHEIQE
VRIIKGLDNPELDVAVGEALAASVREELELVIGAAHEFDLELFLKGELTP
VFFGTALGNFGVDHMLEGLTQWAPAPQTRKANERDVEAVEEKFSGFVFKI
QANMDPKHRDRIAFMRIVSGTYTKA
>PBPRA0626 hypothetical protein
MNHVRIGKNVSISDAVTFMAGDRTRAEKAYAGDIIGLHNHGTIQIGDTFT
QGENLKFAGIPNFAPELFRRIRLKDPLRQKQLLKGLVQLSEEGAVQVFRP
LQNNDLIVGAVGVLQFDVVVARLKAEYNVEAIYEGINVATARWVECDDVK
ILEEFKRKNQQNLALDGGDNLTYVAPTMVNLNLAKERFPAVEFHATREH
>PBPRA0613 putative ribosome-binding factor A
MTTISSVEVSRDMCYAKVFVTFFTIGEQTAKGSLAVLREMAPYIRSLLGK
QIRLRVTPELTFIFDESLTEGMRISNLVSNAVRDDEKRRVDEDNTEEGED
K
>PBPRA0570 putative lysyl-tRNA synthetase
MTDQVQDENKLIAERRAKLDMIRKNCKANGHPNDFRRDSLAADLQATFGE
KTKPELEEEGHIVAIAGRVMAKRGPFLAIQDVSGRIQAYADKTVQKELKE
KYSGLDIGDIIGVKGQLHLSGKGDLYVTMDNYELLTKALRPLPEKFHGLT
DQETRYRQRYVDLIVNEDSRNTMIMRSKVVSAIRNFMMKKDFMEVETPMM
HVIPGGATARPFITHHNALDIDMYLRVAPELYLKRLVVGGFERVFEINRN
FRNEGLSPRHNPEFTMMEFYMAYADYNDLMDLTEEMLSSIATDLHGSPKL
PYGDAIVDFGGPYPRISMLNAIKQYNPDNAEIQALTYEQVADRELMANIA
RGLDIYVEKFWTCGQLLEEIFGETAEPQLMQPTFITEYPADISPLARRND
TNDFITDRFEFFIGGREVANGFSELNDAQDQDQRFKAQVNAKDAGDDEAM
YYDADYITALEHGLPPTAGQGIGIDRLVMLFTNTHTIRDVILFPALRPQN
KA
>PBPRA0433 BFL058, putative ribosomal protein S21
MPVIKVRENEPFDVALRRFKRSCEKAGILSEVRRREHFEKPTTVRKRAKA
AAVKRHLKKLARENARRVRLY
>PBPRA0616 C3920, putative polyribonucleotide nucleotidyltransferase
MNPIVKTFQYGNHTVTLETGVMARQATAAVMASMDDTSVFVSVVGKKAAV
EGQDFFPLTVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRP
LFPSAFKNEVQVIATVVSVNPEVNPDMITMIATSAALAISGLPFNGPIGA
ARVGFINDQFVLNPSNTELEESRLDLVVSGTKDAVLMVESEADRLSEETM
LQAVVYGHDQQQVVINAINEFAAEVATPAWDWTAPVVNAELKARVADKAA
TRLSDAYQITEKMARYDEVGSIKNDVVASLLAEDETLDERELRGMLSSLE
KHVVRGRIIAGHPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQAL
VTATLGTQRDAQIIDSIMGEKKDHFLLHYNFPPYCVGETGFVGSPKRREI
GHGKLAKRGIAAVMPSVEEFPYTVRVVSEITESNGSSSMASVCGTSLALM
DAGVPIKASVAGIAMGLVKEGDDFVVLSDILGDEDHLGDMDFKVAGTDDG
ITALQMDIKIEGITKEIMQIALNQAKGARKHILSVMDDAIGTHRDDISQF
APRIHTMKINSDKIKDVIGKGGAVIRALTEETGTTIEIEDDGTIKIAATE
GAAAKEAIRRIEEITADVEVGRIYTGKVMRIVDFGAFVSVIGAKEGLVHI
SQIAQERVEKVSDHLQMGQEVQVKVLEIDRQGRIRLSMKEAVADQNPATV
QDEQPQG
>PBPRA0614 EBIG1690, putative tRNA pseudouridine 5S synthase
MARRRKGRPIDGVILLDKPTGITSNDTLQKVKRIFFAQKAGHTGALDPLA
TGMLPICFGEATKFSQFLLDSDKRYRVIAKLGERTNTSDSDGEVVETREV
KVDRGQLERCIAKFRGTTDQIPSMFSALKYQGRPLYEYAREGIEIPRESR
KITVHSIELLRFEGHEVEMEVHCSKGTYIRTITDDLGEMLGCGAHVVYLR
RTGVSDYPMENVVTLEQLQALRDQAIEQGIEPGELLDPLLLPTDSAVQDL
PEANVTVEGGDAILHGQPVKASQLPEQGTLVRITVGEQRDFIGIGEIDQN
NMVAPKRVMANKQDEA
>PBPRA0591 ECS0029, putative Isoleucyl-tRNA synthetase
MSDYKDTLNLPETGFPMRGNLAQREPVMLKRWDDEDLYGEIRKAKKGNKS
FILHDGPPYANGDIHIGHALNKILKDIIIKSKTLSGFDAPYIPGWDCHGL
PIELMVEKKWGKPGRKLTAAEFRQKCREYAAGQVEGQKESFIRLGVLGQW
DKPYRTMDFATEANIIRSLGKVAENDHLLKGFKPVHWCTDCGSALAEAEV
EYQDKVSPSIDVKFKAVDEAGVVAKFNCAEGHEGQGDVSVVIWTTTPWTM
PANRAVAVRDDLEYVLVQVEADAANDKAAYRLIVAAELAKDVMDRAGIEH
FHNLGFCKGADLELMRFNHPFYSFDVPIVLGDHVTTESGTGCVHTAPGHG
QEDFVVGQKYGLEIANPVGSNGVYLPDTELFAGQHVFKANDVVVETLKEH
GALLHHHAYEHSYPHCWRHKTPIIFRATPQWFISMDKAGLRAKALGEIKN
VQWLPEWGQSRIEGMVEGRPEWCISRQRTWGVPIALFVHKETQELHPDTR
VLIEKVAQLVEQKGIQAWWDLNPAELMGEADAANYEKVLDTLDVWFDSGV
THFSVVDSREEYNGHSADLYLEGSDQHRGWFQSSLVSSVAMKGKAPYNQV
LTHGFVVDGQGRKMSKSVGNVVAPKDVTNKLGADILRLWVASTDYTGEVA
VSDEILKRSADAYRRIRNTARFFLANLNGFNPETDLVAPEEMVALDRWAV
GRAMEAQEEIIKAYDGYNLHGVTQRLMQFCSVEMGSFYLDVIKDRQYTAK
QGGHAQRSCQTALFYIVEALVRWMAPIMSFTADEIWNEMPASQGNGEQRD
KFVFTGEWFEGLFGLADDEVMNDEFWAEIQQVRGAVNKLLELARKDKVIG
GSLQAEITLHANETLAAKLNTLEDELRFVLLTSKAAVAITDSMPEGAQKT
DVEGLFVTVNASEAAKCDRCWHHVADVGTIEGHEEVCGRCVTNISGEGEE
RKFA
>PBPRA0489 ECS3853, hypothetical Tn5 transposase
MATILAFLAARILQLKFMGQNIKADEESCESVLSPIGWKLLWLKRENKPL
PNEVPSIRWAYLALAKLGGWNDSKRTGRAGWPVLWDGWFKLQTIIEGYHL
AQSLECLDL
>PBPRA0470 ECS3993, Putative translation initiation inhibitor
MTQVLHTDQAPAAIGPYVQGVDLGNMVLTSGQIPVNPVTGEVPEAIAEQA
RQSLENVKAVVASSGLNVSDIVKMTVFVKDLNDFATVNEVYGQFFDEHNA
PYPARSCVEVARLPKDVKIEIEAIAVRK
>PBPRA0483 ECS5235, putative Valyl-tRNA synthetase
MLAFKYRPPLPLRRPNSHIDPSKSAMEKTYNPQSIEQALYQRWEEAGYFK
PHGDTSKDAYSIMIPPPNVTGSLHMGHAFQDTIMDTLIRAERMKGKNTLW
QVGTDHAGIATQMVVERKIAAEEGKTKHDYGRDAFIDKIWEWKAESGGTI
TKQLRRLGASVDWDRERFTMDDGLSAATQEVFVRLFEEDLIYRGKRLVNW
DPKLHTAISDLEVESKDKKGFMWHFRYPLADGVKTADGKDYIVVATTRPE
TMLGDTGVAVNPEDPRYKDLIGKQIKLPIVGRLIPIVGDEHADMDKGTGC
VKITPAHDFNDYEVGKRHSLPMINILTFNADIRDAAEVFDTNGEANDAYN
SELPAKYHGMERFAARKAIVAEFDELGLLEEVKDHDLTVPYGDRGGVAIE
PMLTDQWYVRTAPLAAPAVKAVEDGQIQFVPKQYENMYFAWMRDVQDWCI
SRQLWWGHRIPAWYDNYGKVYVGRTEDEVREKNNLASVVVLRQDDDVLDT
WFSSALWTFGTQGWPENTDALKTFHPSEVLVSGFDIIFFWVARMIMMTMH
FVKDEEGNAQVPFKTVYMTGLIRDENGDKMSKSKGNVLDPIDMIDGIGLE
ELVEKRCGNMMQPKLAAKIEKQTRKAFEGGIEPYGTDALRFTLAAMASTG
RDINWDMKRLEGYRNFCNKLWNASRYVLMNTEEHDCGMAEGAELEFSLAD
QWITSQFEVAAKEFNAHLDNYRLDMAANTLYEFIWNQFCDWYLELTKPVL
WKGTEAQQRATRYTLITVLEKTLRLAHPILPYITESIWQSVKPLVDGVEG
ETIMTQALPQFNEDNFNADVVADLEWVKAFITSIRNLRAEYDIAPSKGLD
VMIKVADEKDAARIQANEIVLTSLAKLDSIKVLAKNEETQACATSLVGKS
ELMIPMAGLIDKDAELARLDKEVAKTQGEIKRIEGKLNNQGFVAKAPEVV
ITKEREKLEGYQETLVKLEAQKETIAAL
>PBPRA0394 HD0203, putative Ribosomal protein L21
MYAVFQSGGKQHRVSEGQTLRLEKLEAETGANVEFDCVLLVANGEEVTVG
APFVTGGKVTAEVVTHGRGDKIKVVKFRRRKHSRKQMGHRQWFTEVKITG
ISA
>PBPRA0533 PA0668, putative tyrosyl-tRNA synthetase
MASIEQALAEIKRGIDELIPEEELIAKLKENRPLRIKLGADPTAPDIHLG
HTVILNKLRTFQELGHDVTFLIGDFTGMVGDPTGKNTTRPPLTREDVLAN
AETYKEQVFKILDPAKTKIEFNSTWLSELGAEGMIRLASNQTVARMLERD
DFKKRYNGGRPIAIHEFMYPLLQGYDSVAMETDVELGGTDQKFNLLMGRE
LQKSHGQKPQVVLTMPLLVGLDGVKKMSKSAHNYIGVSEVPTEMFGKIMS
ISDDLMWNYFECLSFRPLEEIEQFKQDMANGKNPRDVKILLAKEIIARFH
SEADADAAEQEFINRFQKGAMPEEMPELEFEAGIAISNLLKDAGLVNSTS
DAMRMIRQGGAKIDGNKIEDTKLIPAAGTAVYQVGKRKFARITLK
>PBPRA0587 PLU0589, putative ribosomal protein S20
MSPYQDLGVTPLANIKSAKKRAITSEKRRQHNASRRSMMRTFFKKVIAAI
EAGEKENATKAFADMQPVLDRMATKGLIHKNKAARQKARLTAKIKAL
>PBPRA0569 PLU3549, putative peptide chain release factor 2
MYQHVLTSLGGTFDYDAKKEQLEEVNAELEQPAVWNEPERAQALGKSRAA
LEAVVETIDQLDLGVEDVAGLLELAVEEDDQETFDEIEPELAELEAKLAK
LEFRRMFSGEYDSSDCYIDLQAGSGGTEAQDWTSMMLRMYLRWADAKGFK
TEIIEVSAGDVAGLKSATIRLVGEYAYGWLRTETGVHRLVRKSPFDSGGR
RHTSFASAFVYPEIDDNIVIDINPSDLRIDVYRASGAGGQHVNTTESAVR
ITHVPTNIVVQCQNDRSQHKNKDQAMKQLKAKLFEFEMQKKNAEKQANED
SKSDIGWGSQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLK
SGL
>PBPRA0603 PLU4536, 23S rRNA methylase
MSRNKQSASSGRWLKEHFDDKYVQEAQKRGYRSRAIFKIEEIQKKDKLLK
PGMTVVDLGAAPGGWSQYAAEVVGDEGQVIACDILSMDSLPGVSFLQGDF
REEAVLSALLERIQPDMVDVVLSDMAPNMSGNLASDQPRAMYLVELALEM
CKQVLAPNGSFAVKVFQGEGFDQYLAEIRNMFKVVKIRKPDSSRDRSREV
YIVATGYKL
>PBPRA0408 RLUA, putative ribosomal large subunit pseudouridine synthase A
MKPLPHLDYHPPTDPWLDILQHDEDIIMLNKPSGLLSNPGRNPEHYDSVY
SRVLRDYPEAHIVHRLDMSTSGLIMLAVNKDAERHLHAQFRERATQKVYY
ARIWGHPDQDTGTVDLPLICDWPNRPKQKVCYEDGKPSVTHYEVVAREAQ
TTLVRLHPITGRSHQLRVHMQALGHPIIGDEFYANDEANAIADRLHLHAA
EIAFTHPGTKEPIHFFAPCELFPDVPMKTIEFPSADQEK
>PBPRA0395 RPMA, putative Ribosomal protein L27
MAHKKAGGSTNNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTN
VGLGKDHTLFALTDGKVKFEVKGPKNRKFVTIEAA
>PBPRA0615 RPS15, putative ribosomal protein S15
MSLNAETKAAIVAEYAQCENDTGSPEVQVALLTAQINHLQGHFANHKHDH
HSRRGLLRMVSRRRKLLDYLKGKNLDRYQDLIKRQGLRR
>PBPRA0402 SF0048, putative dimethyladenosine transferase
MDSAIARPRIGRKTSMSSDQVHLGHRARKRFGQNFLNDPYIIDGIVSSIN
PLPGQNLVEIGPGLGALTEPVGRLVDKFSVIELDRDLAKRLRHHPDLADK
LTIYEGDAMRFDFTQLIKPNNKLRIFGNLPYNISTPLMFHLFTFHEHVED
MHFMLQKEVVNRLAAGPGCKAYGRLTVMAQYYSRVTPVLEVPPESFTPAP
KVDSAVVRLTPYEVLPHPCTNLKWLDRVCREGFNQRRKTIRNCYKALLTV
EQLEDLGVNPGLRPENITLQQFVKMANWLDANHQNA
>PBPRA0439 SF3097, putative tRNA nucleotidyltransferase
MQTYLVGGAVRDALLGLKVVDKDWMVVGATPEQMLAQGYEQVGSDFPVFL
HPKTKQEYALARTERKSGKGYTGFICYSAPDVTLEQDLMRRDLTINAIAQ
EKDGRLIDPYNGQQDLDNKILRHVSPAFVEDPLRVLRVARFSARFAHLGF
TIAPETIALMQEMVVAGELEALTPERVWKEWEKSLSTENPEVFLTVLRQC
GALKVVMPEIDALFGVPQPAQWHPEIDCGIHTLMVAKQAAELSPNKVIRF
AAQVHDLGKALSPKDDLPSHKMHCKDGLKPIKALCQRLRVPNDYRDTALM
VCAQHTKIHHANEMRPATFVNILDQIDSWRKPERVIQLALCCRADARGRT
GHENDAYLQADILLAAFDAAQQVDVKPIVAAGFKGKDIKEQLAIHRTAAV
ELAIKPLQSKA
>PBPRA0562 STY2836, putative ATP-dependent RNA helicase SrmB
MKDFSELELDSALLNAIEEIGYTRPTEVQAQAIPHALDGRDVLASAPTGT
GKTAAFLLPMIQHLLDFPRKKPGPARVLILTPTRELAIQIADHARALAKN
THLKIFTITGGISYDDHAELLGKTQDIVVATPGRLMEYVESERFDCRAIE
CLILDEADRMLDMGFTKIVERINHECRWRRQSLLFSATLEGKGVREFSET
ILKEPVEVNSAPSRRERKKIHQLYLRCDDMDHKLALLEQILKHQAERSIV
FVKTRDRLAMLRDQLASMNVKCSWIQGEMAQLSRNNAISRFRDGDVNILI
ATDVAARGIDLPDISHVINFDMPRTADVYLHRIGRTARAGKKGIAISLVE
AHDQAMIERVSRYMEEEVPERFINGLRPASKKAKTIKKKKVKIDKKLKVA
KQKKAAKKHKKASENKPEA
>PBPRA0527 YPO0427, hypothetical 16S RNA G1207 methylase RsmC
MSYTAASQVVARQLAFFEGRKVLIAGELSDAYPVELANVAQSVAVFTTNF
GYHNSMSRHDNIDCHFGVQLDAKLDIDMLLIYWPKAKAEADYLMSMLLAK
FGPETEICIVGENRSGVRSAEKMFQPYGPLTKYDSARRCSFYWGRCDNEV
KPFDLNDWFKSYPINVSGVELTVRSLPGVFSHGEFDNGSKLLINTLPSLR
GKVLDFGCGAGVLGAIMKAKHPRIELELCDISALAIESAKETFKVNQLDA
KFTATDVYSELKGPYNYLISNPPFHAGLKTFYTATENFIAQAPNYLFSDG
QLIIVANSFLKYPELIEQSLETCNALANTNKFTIYSAKK
>PBPRA0602 YPO3504, putative RNA-binding protein
MFSTLIHKNRVIMNLSTKQKQHLKGLAHNLKPVVLMGSNGLTEAVIAEIE
IALNHHELIKIKVATEDRETKILIVDAIIRETKAEKVQLIGKTLVLYRQT
EERKIELPRK