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Gene list

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COG category: Translation, ribosomal structure and biogenesis
Gene type: CDS
Genomic element: chromosome 1

Number of genes found: 40

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# Photobacterium profundum, ss9

>PBPRA0319 putative ribosomal protein S10
MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVKGPIPLPTRKERFT
VLTSPHVNKDARDQYEIRTHKRLIDIVEPTDKTVDALMRLDLAAGVDVQI
SLG
>PBPRA0320 putative ribosomal protein L3
MIGLIGRKVGMTRIFTEEGISIPVTVVEVEANRVTQVKSLETDGYNAIQI
TTGTKKANRVSKPAAGHFAKAGVEAGRGLWEFRLENGEEFAVGAELNVEL
FNEVKKVDVTGTSKGKGFQGVIKRWNFSTQDMTHGNSLSHRAPGSIGQCQ
TPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGSIGGN
VIVKPAVKA
>PBPRA0344 putative ribosomal protein S4
MGPKLKLSRREGTDLFLKSGVRAIDTKCKIDNAPGQHGARRGRLSDYGVQ
LREKQKVRRTYGVLEKQFRNYYKEAARLKGNTGENLLQLLEGRLDNVVYR
MGFGSTRAESRQLVSHKAILVNGTVVNVPSFKVAANDVVSIREKAKNQAR
IKAALEVATQRELPTWVEVDNSKLEGTFKRLPERSDLSADINEHLIVELY
SK
>PBPRA0286 putative tryptophanyl-tRNA synthetase
MSKPIVLSGVQPSGELSIGNYMGALRQWEQMQDDFDCQYCVVDLHAITVR
QDPKALHEATLDALAICLAVGVDPKKSSLFVQSHVPEHAQLGWILNCYTQ
MGELNRMTQFKDKSARHANDVNVGLYGYPVLMAADILLYGAHKVPVGSDQ
KQHLELARDIANRFNNLYGSEDQPIFEVPEPYIPAMNARVMSLQDATRKM
SKSDDNRKNVITLLEEPKSILKKINKAQTDAQNPPSIIHDVENKAGIANL
MGLYSGATGKTFADIEAQYAGVEMYGPFKKDVGEAIVAMLEPVQAEYKRI
RADRAYMDAVMKAGAEKASARAAVTLKKAYEAVGFVARP
>PBPRA0323 putative ribosomal protein L2
MAIVKCKPTSPGRRHVVKVVNSDLHKGKPYAPLLEKKSKSGGRNNNGRIT
VRHIGGGNKQHYRLIDFKRTKDGIPAKVERLEYDPNRSANIALVLYADGE
RRYIIAPKGVSAGDMIQSGEDAAIKVGNTLPMRNIPVGSTVHCVELKPGK
GAQLARSAGAYAQIIARTGTYVTLRLRSGEMRKVLSECRATLGEVGNSEH
MLRELGKAGASRWRGIRPTVRGVVMNPVDHPHGGGEGRTSGGRHPVSPWG
VPTKGYKTRSNKRTDKYIVRSRNKK
>PBPRA0341 BPP0053, putative ribosomal protein L36
MKVRASVKKICRNCKVIKRNGVVRIICIEPKHKQRQG
>PBPRA0056 GLYQ, Putative glycyl-tRNA synthetase, alpha chain
MRGILEYYFSSTNLAKFTMQNYDIKTFQGMILALQDYWGKQGCTIVQPLD
MEVGAGTSHPMTCLRALGPEPIAAAYVQPSRRPTDGRYGENPNRLQHYYQ
FQVMLKPSPDNIQELYLGSLEVLGVDTQVHDIRFVEDNWENPTLGAWGLG
WEVWLNGMEVTQFTYFQQVGGIECKPVTGEITYGIERLAMYIQNVDSVYD
LVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTFFDQCEKECKE
LLALETPLSLPAYERILKAGHAFNLLDARKAISVTERQRYILRIRNLTKQ
VAEAYYASREALGFPMCKKDK
>PBPRA0055 GLYS, Putative glycyl-tRNA synthetase, beta chain
MTERNFLIELGTEELPPKALRTLAEAFSSNFEAELKTAALVHQGIEWFAT
PRRLALKVTALATGQADSVVEKRGPAISAAFDAEGNPTKAAQGWARGNGI
TVEQADTLKTEKGEWLLYKQEVKGKPAQELLSGLAAAALAKLPIPKPMRW
GNNEIQFIRPVKTLTMLLGDELIEGNILGADSARIIRGHRFMGEAEFTID
NADQYPAILEERGKVMANYEARKAIILEGAKKAALEVGGIADLEDELVEE
VTSLVEWPVVLTASFEENFLNVPTEALVYTMKGDQKYFPVYDAEGNLIPK
FIFVTNIESKDPRQIIEGNEKVVRPRLADAEFFFKTDRKRPLVDRLPELE
KAIFQKQLGTIKDKTDRITELAGYIAEQIGADVTNAKRAGLLAKCDLMTS
MVFEFTDTQGVMGMHYARHDGEAEDVALALYEQYMPRFAGDKLPSTGVSA
AVAMADKIDTLVGIFGIGQAPKGSDPFALRRAALGVLRIIVEKDYSLDLV
DLIAKARAQFGDKLTNANVEDEVIDFMLGRFRAWYQDEGHSVDVILAVLA
LRPTQPADFDKRVKAVSHFRSLDAAESLAAANKRVGNILAKFDGELPLAV
DSSLLLEDAEKALAEKVEAMIATLAPVFAEGNYQQALSELATLREPVDAF
FDNVMVMADDEKLKVNRLTMLNLLRNEFLKVADISLVQK
>PBPRA0343 HD1953, putative ribosomal protein S11
MAKQPTRARKRVRKQVADGVAHIHASFNNTIVTITDRQGNALSWATAGGS
GFRGSRKSTPFAAQVAAERCGEMAKEYGVKNLEVMVKGPGPGRESTIRAL
NAAGFRITNIVDATPIPHNGCRPPKKRRV
>PBPRA0337 HD1961, putative ribosomal subunit protein S5
MANEKTQSDLNEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRIGFGYG
KAREVPAAIQKSMEKARRNMVTVALNEGTLHHAVKGRHTGSKVYMQPASE
GTGIIAGGAMRAVLEVAGIRNVLAKAYGSTNPINVVRATIAGLSGMNSPE
MIAAKRGLSVKEILG
>PBPRA0315 PLU0431, putative elongation factor G
MSRKTPIERYRNIGICAHVDAGKTTTTERILFYTGLSHKIGEVHDGAATM
DWMEQEQERGITITSAATTTFWRGMEAQFPEHRINIIDTPGHVDFTIEVE
RSLRVLDGAVVVFCGSSGVEPQSETVWRQADKYEVPRMVFVNKMDRVGAD
FLRVVDQIKTRLGANPVPIQLNIGAEEEFKGVIDLIKMKAINWSSEDQGM
TFTYEDVPADMQDLAEEWRMNLVESAAEANDELMEKYLEEGELSEEEIKA
GLRQRTLNNEIVLATCGSAFKNQGVQAVLDAVIDFLPSPTEVKAITGEDE
LGNAIERHSDDDEPFSALAFKIATDPFVGTLTFMRVYSGVVKSGDTVYNS
VKEKRERLGRIVQMHANKREEVKEVRSGDIAAAIGLKSVTTGDTLCDLNN
KIILERMEFPVPVIQIAVEPRSQADQDKMGIALGKLAAEDPSFRVETDNE
SGQTLISGMGELHLDIIVDRMKREFSVDCNVGNPQVAYRETIRGTTKSEG
KFIRQSGGRGQFGHVWLKIEPSEPDEGFVFVNEIVGGSVPKEFIGAVAKG
VEEQMNSGVLAGFPVLDVKATLFDGSYHDVDSSEIAFQIAGSMAFRDGAL
NANPVILEPMMKVEVTTPEDWMGDVVGDLNRRRGMIEGMDDGPANLKILR
AQVPLSEMFGYATDLRSATQGRASYSMEFSEYAEVPKNVANRIIAERT
>PBPRA0336 PLU4710, putative ribosomal protein L18
MDKKASRIRRATRARRKIAELGATRLVIHRTPRHVYAQVIAPNGSEVIAA
ASTVEKVIRESIANTGNKDAAAAVGKAIAERAIEKGISNVAFDRSGFQYH
GRVAALAEAAREAGLKF
>PBPRA0334 PLU4712, putative ribosomal protein S8
MSMQDPISDMLTRLRNGQTAKKVAVKMPSSKQKVAIAALLKEEGFVAEFT
VTGDVKPELEVTLKYFEANPVIEQIQRVSRPGLRIYKKKDALPSVMGGLG
IAVVSTSKGLMTDRAARKAGLGGEIICYVA
>PBPRA0333 PLU4713, putative ribosomal protein S14
MAKESMKAREAKRAKLVAKFAEKRAALKVIISDVNASEEDRWNAVLKLQS
LPRDSSSSRQRNRCNQTGRPHGYLRKFGLSRIKVRETCMKGEIPGLRKAS
W
>PBPRA0332 PLU4714, putative ribosomal protein L5
MAKLHDYYKETVVKELVEKFEYKSIMQVPRIEKITLNMGVGEAINDKKLL
ENAAADMTAIAGQKPLITKARKSVAGFKIREGYPIGCKVTLRGERMWDFF
ERLISIAVPRIRDFRGLNPNSFDGRGNYSMGVREQIIFPEIDYDKVDRVR
GLDITITTSAASDEESKALLSAFNFPFRK
>PBPRA0326 PLU4720, putative ribosomal protein S3
MGQKVHPNGIRLGIVKPWNTTWFANSQEFADNLDGDFKVRQFLIKELKKA
SLSRVVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRAHISKIAGVPAQ
INISEVRKPELDAQLVGDSIASQLERRVMFRRAMKRAVQNAMRLGAKGIK
VQVGGRLGGAEIARSEWYREGRVPLHTLRADIDYATSSAHTQYGVIGVKV
WIFKGEVLGGMPIEEPKADKPKKQRKSRK
>PBPRA0203 PLU4864, putative ribosomal protein L28
MEKTVMSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVESEKR
FVKLRLTAKGMRIIDKKGIDIVLAEMRVRGESV
>PBPRA0338 PM1397, putative ribosomal protein L30/L7E
MIDMANTIKVTQTKSSIGRLPKHVACLRGLGLRRINHTVELEDTACVRGM
INKVHYMVKIEE
>PBPRA0335 PM1400, putative ribosomal protein L6
MSRVAKAPVVLLAGVEVKLNGQEITVKGPKGELALVAHNAVVLTQEENTI
TFGPREGFDKAWAQAGTVRALVNNMVVGVTEGFTKKLTLKGVGYRANVAG
NTVNLTLGFSHPVAHELPTGVKAECPSQTEIVLTGTDKQVIGQVAADIRA
YRSPEPYKGKGVRYADEVVRTKEAKKK
>PBPRA0329 PM1406, putative ribosomal protein S17
MSEQTRIQLGRVISSKMDKSIVVAIERMVKHPMYGKYIKRTTKLHAHDEN
NECNLGDTVEVRECRPLSKTKSWTLVRIVEKARV
>PBPRA0004 RNPA, Putative RNase P protein component
MNKLAFSRELRLLTPEHYKKVFQQAHRAGSPHLTILARPNDLNHPRLGLA
VPKKQIKTAPGRNHFKRIVRESFRLKQHDLPANDFVVIAKKSASELSNEE
LFKLLDKLWHRLSRLSRG
>PBPRA0339 RPLO, putative ribosomal protein L15
MRLNTLSPAPGSKPSAKRVGRGIGSGLGKTCGRGHKGQKSRSGGSVRPGF
EGGQMPLKQRLPKFGFTSRKSLVTAEVRLGELAKVEGDVIDLATLKTANL
ITKDIKFVKVVLSGEIARTVTVNGLRVTKGAKAAIEAAGGKIEE
>PBPRA0258 S3733, putative ribosomal protein L31
MKQGIHPDYSATNARCSCGNTFIFQSTMTKDVNLDVCDKCHPFYTGKQRQ
ASSGGRVDKFNKRFGALGSK
>PBPRA0198 S4086, putative ribonuclease PH
MRPSGRSTSQVRPITITRNFTAHAEGSVLVEFGDTKVICTASVEENVPRW
LKGKGQGWVTAEYGMLPRATHTRNRREASSGKQGGRTMEIQRLIARSLRA
AVDLEALGEQMITVDCDVIQADGGTRTASITGAMVALVDAVNSMIEKGTL
KKSPIKGMVAAVSVGIYKGEAICDLEYLEDSAAETDMNVVMTEEGKMIEI
QGTAEGEAFSHEELLAMLALAKDGIADIVTMQKQALES
>PBPRA0321 S4411, putative ribosomal protein L4
MELVVKGADALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRSD
VSGGGAKPWRQKGTGRARAGTIRSPLWRTGGVTFAARPQDHSQKVNKKMY
RGAMKSILSELVRQERLIVVDNFSVEAPKTKELAAKLKELDLSDVLIVTG
ELDENLFLAARNLYKVDVRDAATIDPVSLIAFDKIVMTAAAVKQVEEMLA
>PBPRA0229 SF3645, putative rRNA methylase, SpoU family
MFSKLMFDIALYEPEIAPNTGNIIRLCANCGADLHLIEPLGFDLEEKKLR
RAGLDYHDLAHVHRHKDFAAFKEAMAGRRLFACTTKTTNYHTNAQFAEGD
VLIFGPETRGLPADFIESLPLEQRLRIPMHPDSRSLNLSNAAAIIGYEAW
RQLGFKGSI
>PBPRA0314 SO0227, putative ribosomal protein S7
MPRRRVIGQRKILSDPKFGSDLLAKFVNILMVDGKKSTAEKIVYTALDTM
TERSGEECLSVFEKALENVRPAVEVKSRRVGGSTYQVPVEVRPVRRNALA
MRWLVEAARKRGEKSMAQRLAGEMLDAADNKGTAVKKREDVHRMADANKA
FAHYRW
>PBPRA0322 SO0233, putative ribosomal protein L23
MITEERILTVLRAPHISEKATMAAESANTIVFKVAITATKREIKAAVEKL
FEVEVKSVNTLVAKGKTKSQGARQGRRSDWKKAYVILKEGQDIDFAGSAE
>PBPRA0324 SO0235, putative ribosomal protein S19
MPRSLKKGPFIDLHLLKKVEKAVESGDKKPVKTWSRRSMIIPQMIGLTIA
VHNGRQHVPVFVSEEMIGHKLGEFAPTRTYRGHAADKKAKKR
>PBPRA0325 SO0236, putative ribosomal protein L22
MEAIAKHRFARISPQKARLVADQLRGKPVAQALEILNFSNKKAAELIKKV
LESAIANAEHNEGADIDDLNVAKIFVDEGPTMKRIMPRAKGRADRILKRS
SHITVVVADR
>PBPRA0204 SO4246, putative ribosomal protein L33
MAKGIREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYK
EAKIK
>PBPRA0327 STY4365, putative ribosomal protein L16
MLQPKRTKFRKTFKGRNRGLANGTDVSFGTFGLKAVGRGRLTARQIEAAR
RAMTRHVKRQGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIQPGK
VLYEMDGVPEVLAREAFNLAARKLPIKTTFVIKAVM
>PBPRA0330 STY4368, putative ribosomal protein L14
MIQMQSTLDAADNSGARRVMCIKVLGGSHRRYAHIGDIIKITVKEAIPRG
KVKKGDVLKAVVVRTRKGVRRQDGSVIRFDRNACVLLNDTTEQPIGTRIF
GPVTRELRNTKFMKIVSLAPEVL
>PBPRA0316 TUFB, putative translation elongation factor TU (EF-Tu-B)
MSKEKFERLKPHVNVGTIGHVDHGKTTLTAAICTVLAKVYGGDAKDFASI
DNAPEERERGITISTSHVEYDTPARHYAHVDCPGHADYVKNMITGAAQMD
GGILVVAATDGPMPQTREHILLGRQVGIPYIIVFMNKCDMVDDEELLELV
EMEVRELLSEYDFPGDDCPVIMGSALGALNGEAQWEEKIIELAEALDNYI
PEPERAIDLPFILPIEDVFSIQGRGTVVTGRVEQGIVRVGEEVAIIGIKE
TTTTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDDVERGQVLAKPGSIT
PHTTFTSEIYVLSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM
VMPGDNIAMTVTLIAPIAMDEGLRFAIREGGRTVGAGVVATIIA
>PBPRA0328 VV0383, putative ribosomal protein L29
MMNAVDLRAKSVEELNAELVSLLREQFNLRMQAATGQLQQTHNLKAVRRD
IARVKTVLTEKAGA
>PBPRA0342 VV0396, putative ribosomal protein S13
MARIAGINIPDQKHSVIALTAIYGIGKTRSKAVLAEAGIAESVKISELSE
EQIDLLREGVAKYTVEGDLRREVSMNIKRLMDLGCYRGIRHRRSLPLRGQ
RTKTNARTRKGPRKPIKR
>PBPRA0313 VV3032, putative ribosomal protein S12
MATINQLVRKPRVKQVVKSNVPALAACPQKRGVCTRVYTTTPKKPNSALR
KVCRVRLTNGFEVTSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRG
ALDCAGVNGRKKGRSKYGVKRPKS
>PBPRA0188 Y0104, putative tRNA methyltransferase
MSRSEFLESRNSHLDTRYLRSQPSPLKQNTKLLMTPDRYQRIHSVLATRQ
PDLTVCMEEVHKPNNVSAIIRTADAVGIHKVHAVWPKENMRVLSHTSAGA
RNWVELDTHDNMVDAITQLKAQGMQILATNLSDTAIDFRDVDYTKPTAII
LGGEKNGITAEALAQADQDIIIPMVGMVQSLNVSVASALILYEAQRQRQN
AGMYEREKTLLPDEVVHRILFERGHPVLAKVARRKRLSYPPLDDEGQIVA
GDDWWATMQAIEPKKHK
>PBPRA0331 Y4000, putative ribosomal protein L24
MAAKIRRNDEVIVLTGKDKGKKGKITKVLATGKVIVEGINLVKKHQKPVP
AMGVQGGIVEQEAAIDVSNVAIFNAETGKADRVGFRFEDDKKVRFFKSNS
VTIK
>PBPRA0346 Y4016, putative ribosomal protein L17
MRHRKSGRQLNRNSSHRKAMFSNMASSLVSHEIIKTTLPKAKELRRVIEP
LITLAKTDSVANRRLAFARTRDNAVVAKLFTELGPRFAKRPGGYTRIMKC
GFRTGDKAPMAYIELVDRPAQEAASAE