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COG category: Translation, ribosomal structure and biogenesis
Gene type: CDS
Genomic element: chromosome 2

Number of genes found: 29

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# Vibrio parahaemolyticus RIMD 2210633, O3:K6

>gid:500825  VPA0001  conserved hypothetical protein
MTADEKILIKAPRSHKDGHLFEVHESSADWVEQYQHFKGVTKSILELLNL
ISLRGFSSKDGLVSTTEIVEATDGQLTRAALQQRLRAAVNIGLFTQTPVR
FEEGLAGKTMLHKFVNPNQLISVLGATSLVTDKVRQNEKQKRSKALAQTQ
VNKRLLNEHGLNTPPMMKDEADQFVVSPTNWAGIIDQALAPPRTRKSYQK
SMVSISGTKAVIETRSSKNIMTVDDLMTLFALFTLTVQYHDHHKDQYQMD
AAHVPNKTPLYITDILSLRGKKDSGPARDSIRDSIDRIEFTDFQLHELTG
RWLSENMPEGFKSDRFRFLARTITASEEAPVEGSDGEIRIKPNLYILVWE
PSFYEELLTRDYFFLFPPEILKQHTLVFQLYSFFRSRMVRRHTDCMLLSE
LNQKLARNIEWRRFSMDLIRELKRLSDGKGTDDLFVVNLWGYHLTIETMI
ENDKVMDYQIDIKCDVEEVLRYSRARTTNAGKRNMAPTLPNPLRNEMVTR
QQLEALSGIIDGEFEPIQRKTPSPRGNLGRRVKQRKHLVEINADEITITL
SKYTSPEALERSITALSAMTGHSYASIKEECSEYIEKLDWLRVGDEPIPY
ETLSKTVELFNTQNEVKHLTIERLIAGLAVRRKVCRQVFDGHMDEMVFRA
LDEMAI
>gid:500886  VPA0062  putative ribosomal large chain pseudouridine synthase A
MHSPEHCFTRFTADTSDYELPTQFTFPFYYTPHPLCVLAAKQLQQHLLAQ
TDFEHDFGLVNEETGRGKMFGVLLVKSPQGELGFLSAFSGKIADQNLIPG
FVPPVYDMLTDEGFFRAETDAINAANAEYKTCAANPELADLKAQIQADRA
AYQQEEQTQRQVMIDGRAARKRQRQQGEQTLNADDLKILLDELGKQSVAE
KNVLKYLKQAWDEKLAIKEARLAELEQQLAHLKEQRKTLSNALQHKLHKQ
YRFLNSHGEARDLVDIFADTTNPIPPAGAGECAAPKLLQYAFKHGFKPLA
LAEFWWGVSPKSEVRQHKKFYPSCNSKCQPILGHMMQGLDVEPNPLAENW
AEDKELEIIYQDDAMVVVNKPSGLLSVPGKTIKDSAYTRIQAMFPDVEGP
FVIHRLDMATSGILVFALTKRANKSLQKQFMARGVQKRYMALLEGVLNEP
EGEISLPMRGDPDDRPRQLVCFEHGKHAETYWQLIDVKDGRSKVYMYPKT
GRTHQLRVHSAHHMGLNMPMVGDGLYGEKANRLHLHAEMLELDHPYSKER
MVFRAECEF
>gid:500918  VPA0094  hypothetical protein
MNLFKDLPNNLDEEVFEDLLTHKNLRIERIVSTGQTSPESGWYDQEEHEW
VLVLKGAGELTFESGVVQRLDAGEHVTIPAHTKHKVSWTDPTQETIWLAV
FYQ
>gid:500950  VPA0126  putative acetyltransferase
MSTLISTPRTKMSPIRAEDWALFQRLHIEPSVISLCFDKPDERVLRDKFE
SRLASWTPECDHWLCLTIFDANTQQPIGITGFVLEEDKAEVGYLLLPEFH
GQQFGTETLNALLHWAETTHDILRFSATVTEGNVASERVLTKCGFELSQV
IPDAYQIGGKHYADKIYSRQK
>gid:501005  VPA0173  ribosomal protein S6 modification protein
MRIAILSRNENLYSTMRLKQAGEERGHQIDVIDTLHCYMDITSNNPMIRY
KGEELPQYDAVIPRIGASITFYGTAVVRQFEMMGTFCVNESVAISRSRDK
LRSLQLLSRKGIGLPRTGFAHHPDNIQDVIKNVGGAPLVIKLLEGTQGIG
VVLAETNKAAESVIEAFMGLKANIMVQEFIEEAKGADIRCFVVGNKVIAA
MKRQAKEGEFRSNLHRGGSAQLVRLSKEERATAVNAAKVMGLNLCGVDIL
QSKNGPVVMEVNSSPGLEGIELATGKDVAGMIFDFIEKNAKPNSNRTRGK
G
>gid:501127  VPA0294  hypothetical protein
MTFRQEYNGCKSFVCPNCGVPDLSLYSRSNRLGYDAWHCPECGAYPPVLI
NEPILALAHQLQQQTFELKLLPHCECRLPAWQRYGRTAVGSPRVKCRCCQ
KTATLPNPIKESRTLQPLLDALLAEVSPKDLQYKLGLNHRRFSQSLERLA
SMLDTFSRLYERHLSFSNIQTRSFVQVARSGFRHHGREQRAAHIWTLCSA
DAQTGYVLLLSDNAWFPQTEMSEHVIPQPLWEQSRYQLTQQEEMPNESDI
FLQAQRTYDKILSRSQFDQLAYCDGSHAKSKEVLLTRPVFAAHAHMQNLA
KYFANKVPKRFVLEHESFLRGAAITAFTSAIKRGTTQLYYCHIGQSEENL
SLNHAKQKMSWWDETWRRGNIQNQYGSWQVGMGWLTQKSARPSESIDELI
PAHPNWNSEFWNRYTQWLPPSYAAHLSLQRIKQWQAIYRFLYNYSAMQSP
PKVGVDEIDLSRVDSIAESINRSVNAPVHL
>gid:501160  VPA0328  putative translation elongation factor G
MLINKIRNIAFVGQTGTGKTTLIEKLLFTCDATHHLGSVEKGDTVTDFDP
QSIQYQHSIEATPVALRWNKHRLNIIDTPGQNELLGRTISVFPAVETSAL
VIDPQTPLNQTSDRLFTFAKEQQKCQMIIINKLDNHGNQLERLLENIVEH
FGDHCLPINLPSADGESVVDCYFEPELGRETLLATVDEAHETLIDQVIEV
DEELMELYLEQGSELTAEQLHDPFEEALRTGHVIPVCFVSAQTGAGVELL
LRTLAEIMPMPNEGNPPLLEKNGKKIKVNCETLEHTVAHVYKVSVDPYMG
KLAYLRVYQGEINAGSQLYIGESNKAFKVGHLYQLQGKDRTEIPRALAGD
FCVLAKVDDLEFDSIVHDSHEEDGVQLKTLDLPDSMYSLCLKPLKRGDEQ
KLGDVLNKIASEDPSLRIEHRARTNETIISGQGEFHLKVALEKMANVYKL
DVETCQPSVEYFETITKPAEGHYRHKKQSGGAGQFGEVQLKVRPLERGAG
FKFINKVVGGAIPTALIPAVEKGILQALEEGAISGNPIKDVEVTVYDGKY
HSVDSKEIAFVIAGKKAFLDAINNADPIVLEPIVQMELHIPTANVGDVSG
DLSGNRGLIEGTEPIDSSFTLLRAKSPVNELQDYARRLRSITGGEGSFSM
TLSHYEPAPPAVQKQVCQGSTQQG
>gid:501201  VPA0368  tyrosyl-tRNA synthetase
MTTPLLQDLQDRGLIAQASDLEEIQTLLSQPQTVYCGFDPTAGSLHIGHL
VPLIMLKRFQDAGHQAVALIGGATGMIGDPSFKATERSLNSAEIVSGWVN
DLSNQIQQLMNHQLSKPMIMVNNADWMRAINVIDFFRDVGKHFSINTMIN
RESVKQRLQRPDQGISFTEFSYALLQSYDFAELNRQYGCRLQIGGNDQWG
NIVSGIDLTRRQNGEQVFGLTLPLITKSDGTKFGKTEGGAVWLDPSKTSP
YAFYQFWLGAEDADVYHFLRYYTFLSCEEIASIEAQDQASQGKPQAQRIL
AEEMTRFVHGEEGLASAERITQALFSGNVQQLSLGELKQLELDGLPSIES
AQQDLVELLIESGLASSKRVAREHISNNAISVNGEKVSADNPSLSFPLFD
QYWLLQRGKKHFCLVKRAA
>gid:501207  VPA0374  periplasmic L-asparaginase II
MTKNLFRLSTITLGLCLSSLSFAQSDLPNIKILATGGTIAGAGQSATESN
YTAGKVGVESLISAVPSMTNIADISGEQVVSIGSQDMNDEVWLKLAKRVN
ELLAQDDVDGIVITHGTDTLEETAYFLDLTVKSDKPVVIVGAMRPSTAMS
ADGPVNLYNAVVTATDEDSKGRGVLVAMNDTIFDARDVTKTNTTSVSTFQ
SPNFGPLGYIHNSDAKYQRSPERKHTTETPFDVSKLNTLPKVGIVYNYAN
ASSLPVKALVDAKFDGIVSAGVGNGNLYHTVFDELEKASKDGIVVVRSSR
TPTGSTTLDAEIDDDKYGFVASGTLNPQKARILLMLSLTQTKNYQDVQKM
FQYY
>gid:501210  VPA0377  hypothetical protein
MKETKITISLPSLIHRIGGDHAKRAKTLAAEKQCDLKRIRRSRNWQISGE
ALDVKAFLDHLKSEEAEVMRFAINKIEQALLAHQDKLEPLDVKLIRLVRQ
NPNITLAELMAETNCTLVQARTARFDAELL
>gid:501223  VPA0390  ATP-dependent RNA helicase RhlE
MGFTSLGLSAPILKAIQEKGYDTPSPIQAKAIPAILEGKDVMAAAQTGTG
KTAGFTLPILERLSNGPRVRANQVRALILTPTRELAAQVQENVFMYGRHL
PLSSAVVFGGVKINPQMLRLRKGADVLVATPGRLMDLYNQNAVKFDQLEV
LVLDEADRMLDMGFIRDIRKILALLPKQRQNLLFSATFSDEIRDLAKGLV
NNPVEISVNPANSTARTVEQSIYPADVKKKAPMLVKLIKDGDWKQVLVFT
KTKHGANRLAKFLIEQNLPAAAIHGNKSQGARTKALADFKSGEIRVLVAT
DIAARGIDIPQLPQVVNFELPKVAEDYVHRIGRTGRAGEVGKAISLVCAL
EASELFAIERLIQEVLPRKELEGFAPTNVVPESKLDTRPIKPKKPKKPKK
PKAPNASSENAPATEKKAGNGANKPKRRFNGGNNGNKNSTNQGGAGKPKG
NREGQGRAHSKPDDRKPNGNKPNGNKPNGNKPNGNKSGNAGKPSGNRKPN
NAKPAGNKPSGQRRKPRPQAAN
>gid:501307  VPA0474  spermidine n1-acetyltransferase
MKKGLKMRALERSDLRFIHELNNNRNIMAYWFEEPYESYDELEELYRKHI
HDDAERRFVVEDADGILIGLVELIEINYIHRSAEFQIIIAPDHQGRGYAM
EMIHRALDYSFSILNLRKIYLLVAVENEVAIHLYKKCGFIEEGHLIEEYF
INGSYRDVKRMYVLKHQYQKSIEEQA
>gid:501416  VPA0583  putative ATP-dependent RNA helicase
MTDKTQQATFADLGLIPTLVERLEALEYNQPTPIQSHAIPHVLDGRDMIG
GANTGSGKTAAFSLPILQKILQQGESNDRRGNFVSHLILVPTRELASQVA
YNVKSYSYHLRDKIKTVAVFGGVSVNPQMLALRGGCDIIVATPGRLLDLV
SSNAIKLDQVKTLVLDEADRMLSLGFTEELNKILALLPEKKQTLLFSATF
PEKVTALAQHLLNDPVEVQLQSAEASTLVQRVFSVNKGEKTAVLAHLIKQ
HQWRQTLIFVNAKNACNHLAQKLSKRGITAEVFHGDKGQGARTRVLDGFK
SGEIQVLIATDIAARGLDIEKLPVVINFDLPRSPADYMHRIGRSGRAGEV
GLGLSLIDYDDYHHFKVIEKKNKFQLEREQVEGFEVEDDQSEAYFLPMKP
RAKPAGTGKKKKKRNQ
>gid:501423  VPA0590  putative ATP-dependent RNA helicase
MSFSSQGFAPEVVKALAECGYEKLTPIQQKAIPMARKGHDIFATAQTGTG
KTAAFSLPMIQQLLDSGRTASRKTARALILAPTRELAEQIADNIKAYTKY
TDLSVVAVFGGRKMSSQVSALENGVDILVATPGRLEEHIEQGNVSVANLE
FLVFDEADRILDMGFIHAVRKIMLDVDTDPQIMMFSATTSSQLNLLAKDI
LRKPKRIEVERANTTAHTVAHVLYPVDQERKTELLSELIGRKNWQQVLVF
VNYKETANDVVKELKLDGIKAVVCHGDRAQSARRRALEEFKTGKVRVMVA
TDVAARGLDIEDLPHVVNYDMPFLAEDYVHRIGRTGRAGKQGHAVSFVNR
DEELTVVQVENLIQQRIRRIELAGYEPKQRESYIEKLNSKPAFKNRQGRR
NNPNQSATDQGSAERRLAMVKRLKARRGTN
>gid:501439  VPA0605  hypothetical protein
MALGCILKTTYQENVMSVSQMATSRLYKLVQILCSARNANLPVEQGKCLY
EPIENGVELHHAHFLLDSQHSEYTSPIAKILFDSQTQLWRFYVPASRSED
IRWIPYKKLPHSHTLEDLLAELESDPQACFWE
>gid:501442  VPA0608  ATP-dependent RNA helicase DeaD
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKA
QTGTGKTAAFSLPLLNKLDLDQRKPQAIVLAPTRELAIQVAAEMKNLGKN
IKGLKVLEIYGGASIVDQMRALKNGAHVVVGTPGRVQDLINRERLHLDEV
NTFVLDEADEMLNMGFVDDVTAIMEHAPESAQRVLFSATMPPMLKNIVER
FLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLLETEETDASIV
FVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVR
TNQIRMLRTIERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKAL
DKFAELVEKLQTSLEIDPAMLAAMLLKRQQGKRPLFYIGEDPMVEAIERD
KQRRKERREGGREGGRSFNNQDWDTYQLQVGREQGVQVKDIVGALANELG
LGKGSIGAIKLAQGHTFVQLPKAMTSEAASKLSKLRIRQQDVGAVVCDFD
DFRESRGGRRDGGRRDGGRREGGFRGNREGGNRGGERREGGRREGGFRGN
RDGNREGNREGGERRFDRNRGGDHRGNYRGERGHGRGRRTQDA
>gid:501594  VPA0760  putative ribosomal-protein-serine N-acetyltransferase
MYPHDYQGNGSQARFSVSERVSIEPLTTKHATVLLEVVNTYRNSLSGYLP
WTDFVTNRREAVNYISQRVNSKALDAHWCAIYFDEQFTGVIGIKGVDSHT
HVTEIGYWLANNGRGHRVIDQVLAVLIPFLKQKGHAQFIQFHCMEDNIAS
INIAERAGATLKEYVDHEFETLDRSQRLGIYELRLT
>gid:501618  VPA0784  polypeptide deformylase
MAVLEILSIPDPRLKVKAEKVTDVSTIQTLIDDMLETLYATGNGIGLAST
QVGRKEAVVVIDISDERNDPLILVNPEVVSGENKALGQEGCLSVPEYYAD
VERYTSVVVSALDRDGNPITIESDEFLAIVMQHEIDHLSGNLFIDYLSPL
KQKMAMKKVKKYVKAQAK
>gid:501679  VPA0845  ATP-dependent RNA helicase, DEAD box family
MRFIMSVNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAA
AQTGTGKTAAFGLPIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQY
AEHTDLRIVCVYGGTSIGVQKNKLEEGADILIATPGRLLDHLFNGNVNIS
KTGVLVLDEADRMLDMGFWPDLQRILRRLPNDKQIMLFSATFEKRIKTIA
YKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAYLIGSRNWQQV
LVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRA
LIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSL
MSRDEEYLLRAIETLLDQRLPQEWLEGFEPSLIEEVEPERDGGGRRKSRS
SEKRKLKAKLAIHKNRGKHRK
>gid:501723  VPA0888  Sui1 family protein
MTLVYSTETGRIKPEEEKVARPKGDGIVRIQRQTKGRKGKGVCIVSGLDL
DDAPLKLLAAELKKVCGCGGSVKDGTIEIQGDARDKIKTHLEKKGMTVKL
AGG
>gid:501759  VPA0924  hypothetical protein
MQISSDVHNYMETLVGQVLSSDQYTSQFDNEQLADIACLALIQLKPVYIR
HDIDFLSALPERKLTQFKQSVDVAVHNAAAMILEDRRKNRDNDVPVIFSH
TSYDDDKELDWFEKPILNVNIR
>gid:501813  VPA0977  putative acetyltransferase
MKTLTTERLILRLVSVDDAPFILELYNHPDFYRFVGDKQMRTDYEAVRYI
KENMLRMEEKKGVSLLVVEDKQTKQPLGICGLVKRDTLNAYDIGYGFLPS
AYGQGFAIEAAKAVIEYAKQAMQLSQLLAITNNDNIRSISLLKKLGFEFE
HVEQQYDNGRTLELYTLQL
>gid:502031  VPA1188  conserved hypothetical protein
MLKISNSVTLQEWEIQLTPIRAQGNGGQNVNKVATAIHLRFDIHHSSLPE
FYKERLLALSDSRITKDGVVIIKAQQFRTQEKNKEDALNRLQELIKAAAL
QDKKRIKTKPTRASQRRRLDSKNKQGAKKQQRKKVLY
>gid:502148  VPA1303  hypothetical protein
MKKLSLLGLLILFGCNQQNTPTPDPNHNQPHQSFKKTPEIAKELKAQPTI
DDQFALLYRKFDYTLDRSDSLTGRDENKDGIRDDIEAFINALEVSEPVRN
ALKQDARQTQKNLYYDWSEKTEVNIDKAMAIGDEFDKVLACKDFVGIPVD
DSIDTSKTIAALTYNTKARTVAYLTYNHLLDGSVSTLLPAEQQYCE
>gid:502319  VPA1468  ATP-dependent RNA helicase, DEAD box family
MENTLQFKDLGLDNRLLKNLKHYDFKKPTDIQKQAIPVAIAGKDLLASSK
TGSGKTLAFVLPMLHKSLKTKSFSAKDPRAVILAPTRELAKQVYGELRSM
LAGLSYDAALILGGENFNDQVKALRRYPKFIVATPGRLADHLEHRSLYLD
GLETLILDEADRMLDLGFAPELRRIHNAAKHRRRQTLMFSATLDHAEVND
IASEMLNAPKRIAVGVSNEEHKDITQKFYLCDHLDHKEAILERVLSEAEY
RQVIIFTATRDDTERLTAKLNEKKLKAVALSGNLNQTQRNTIMSQFERAV
FKILVTTDVASRGLDIATVTHVINFDMPKHTEEYVHRVGRTGRAGNKGDA
ISLVGPKDWDSFKRIETYLQQDLAFSVFEDLKGKFKGLKPPKKDFRNKKA
TTKKARPQAKKVAKQPAKRDKSFYKNVSVGDDVFIPKKKPAAPSSEES
>gid:502398  VPA1547  hypothetical protein (LafA 5' region)
MVNLISTHAIYEYLCSLAVQHIVTDDDQLVFEALKHNDIQHACQAIRETQ
SGEVVYQHLTLRFGLRGEQSVYQFELSEQMQYCLDLFSLYLALRQTQFQL
EAFHPDLISNVVVPIRVDALLWDPGVYFLEQMVQFHSAAFQHVIPSLQAD
ETLCLHERMETLVEKLKENAFALWFEVATSQTHFERIAEFDPDMIKLSVT
IENKQDQHSFLPIARFLRKHKYQWVAGRVASQVELNRYRLLGASYYFGYF
SDIPTSLSFRSFDEE
>gid:502550  VPA1699  ATP-dependent RNA helicase, DEAD box family
MPFSTLSLSSELIHALPKDFKKPTDIQALAIPELLAGQDLLALANTGSGK
TLAYGLPLLEKLRVNPEQKALILVPTRELAMQVSEAINQVGQALDLNTVC
LCGGVDKEQQQQALATNPHILVATTGRLVDLANNGLDLSKVHYLVLDEAD
RLLDMGFWPDVQNIAMQTSNQRQTAMFSATFSDELKGKVKLLMQAPKQVA
AHQENSTNQDIVETLYLVNKGSKTKALIELIKQNSWTQVLVFIGAKENAD
GLAKKLNKAGISTNALHGDKSQAEREEALAQFKSGQIQVLIATDLLARGI
HIEQLPVVINFELPMHAETYVHRVGRTARAGEQGVAMSLVCHGEMDALNA
IRHLTQRALPVQDLVGFPVTDKPSTGESKRAPRDKKANRRTNAKKSIKQF
QGKSKRPAPSAK
>gid:502571  VPA1720  putative acetyltransferase
MTIQPTLTTERLVLRPFNIGDCQQVALLAGDKRIADMTANIPHPYELPMA
QAWIDRHYPMYQQHQGVAYAITLRNTGELLGAVSLPRIEEGYGTLGYWVG
VPHWGKGYAFEASKVLLEFARMHFELNGITVMHLVDNQRSKSVIQKLKIP
YVGDKTLRMQGKERKVCVYQLTFVASE
>gid:502574  VPA1723  putative ribosomal protein N-acetyltransferase
MIFRSFFTHRIASMETKRLKLIPACLERAEEAHQAVVRSQKTLEVYLPWV
PHVLTLEAMIEGTEKAIANFENFEEELRYYIIEKESDRLLGAVGLMIRDP
DVPSFEIGYWLDDAAVGNGYVAEAVLEVERYAFDDLGAKRIAIHADSTNQ
KSRAVAERCGYEFEGELRNERLTTSGELSNTVIYSKIRE