Gene list
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COG category: Translation, ribosomal structure and biogenesis
Gene type: CDS
Genomic element: chromosome
Number of genes found: 132
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Dehalococcoides sp. CBDB1, CBDB1 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | cbdbA361 | polyA polymerase family protein | chromosome | CDS | 306389 | 1257 | - | 0.4821 |
NA | cbdbA816 | putative translation factor Sua5 | chromosome | CDS | 664180 | 642 | - | 0.479751 |
NA | cbdbA189 | ATP-dependent RNA helicase, DEAD | chromosome | CDS | 172497 | 1686 | + | 0.514235 |
NA | cbdbA1128 | SAM-dependent methyltransferase HemK family | chromosome | CDS | 918554 | 834 | + | 0.501199 |
NA | cbdbA1023 | putative translation initiation inhibitor | chromosome | CDS | 826937 | 378 | - | 0.460317 |
NA | cbdbA58 | putative GTP-binding protein | chromosome | CDS | 37672 | 1104 | - | 0.506341 |
NA | cbdbA275 | polyA polymerase family protein | chromosome | CDS | 241211 | 1497 | - | 0.483634 |
NA | cbdbA759 | translin family protein | chromosome | CDS | 619520 | 633 | + | 0.511848 |
NA | cbdbA1426 | putative ribosomal subunit interface protein | chromosome | CDS | 1128867 | 540 | + | 0.505556 |
NA | cbdbB36 | conserved hypothetical protein,CRISP-associated | chromosome | CDS | 1204745 | 618 | - | 0.493528 |
NA | cbdbA1328 | ribosomal large subunit pseudouridine synthase,RluD subfamily | chromosome | CDS | 1053829 | 903 | + | 0.512735 |
NA | cbdbA1167 | hypothetical protein | chromosome | CDS | 946252 | 468 | - | 0.440171 |
NA | cbdbB12 | conserved hypothetical protein | chromosome | CDS | 312268 | 288 | + | 0.510417 |
NA | cbdbA919 | tRNA modification enzyme, MiaB family | chromosome | CDS | 752124 | 1251 | - | 0.455635 |
NA | cbdbA500 | glucose-1-phosphate thymidylyltransferase | chromosome | CDS | 403926 | 1182 | + | 0.48308 |
NA | cbdbA1125 | nucleotidyl transferase family protein | chromosome | CDS | 914300 | 1086 | + | 0.491713 |
NA | cbdbA490 | acetyltransferase, GNAT family | chromosome | CDS | 396237 | 561 | - | 0.477718 |
NA | cbdbA951 | acetyltransferase, GNAT family | chromosome | CDS | 778622 | 876 | + | 0.469178 |
NA | cbdbA484 | translation initiation factor, putative,aIF-2BIfamily | chromosome | CDS | 392280 | 999 | - | 0.518519 |
NA | cbdbA767 | pseudouridine synthase, RsuA family | chromosome | CDS | 626100 | 750 | + | 0.481333 |
NA | cbdbA1421 | 2'-5' RNA ligase family protein | chromosome | CDS | 1127257 | 582 | + | 0.501718 |
NA | cbdbA1040 | metallo-beta-lactamase family protein | chromosome | CDS | 841485 | 1407 | + | 0.457711 |
NA | cbdbA1043 | RNA methyltransferase, TrmA family | chromosome | CDS | 847778 | 1182 | + | 0.472927 |
NA | cbdbA853 | lysyl-tRNA synthetase-related protein | chromosome | CDS | 696898 | 930 | - | 0.45914 |
alaS | cbdbA65 | alanyl-tRNA synthetase | chromosome | CDS | 41966 | 2616 | + | 0.524465 |
argS | cbdbA1196 | arginyl-tRNA synthetase | chromosome | CDS | 967305 | 1671 | + | 0.491323 |
aspS | cbdbA663 | aspartyl-tRNA synthetase | chromosome | CDS | 544764 | 1797 | + | 0.489149 |
ctc | cbdbA1419 | ribosomal protein L25 (General stress protein Ctc) | chromosome | CDS | 1125743 | 657 | + | 0.47032 |
cysS | cbdbA76 | cysteinyl-tRNA synthetase | chromosome | CDS | 56546 | 1374 | + | 0.483261 |
def | cbdbA733 | polypeptide deformylase | chromosome | CDS | 600177 | 504 | - | 0.470238 |
dtd | cbdbA23 | D-tyrosyl-tRNA(Tyr) deacylase | chromosome | CDS | 18532 | 462 | + | 0.512987 |
efp | cbdbA854 | translation elongation factor P | chromosome | CDS | 697833 | 567 | - | 0.421517 |
efp | cbdbA670 | translation elongation factor P | chromosome | CDS | 551077 | 561 | - | 0.433155 |
fmt | cbdbA1742 | methionyl-tRNA formyltransferase | chromosome | CDS | 1394532 | 939 | - | 0.523962 |
frr | cbdbA318 | ribosome recycling factor | chromosome | CDS | 276778 | 558 | - | 0.453405 |
fusA | cbdbA1130 | translation elongation factor G | chromosome | CDS | 919473 | 2061 | - | 0.504609 |
fusA | cbdbA437 | translation elongation factor G | chromosome | CDS | 363866 | 2082 | + | 0.491835 |
gatA | cbdbA1284 | glutamyl-tRNA(Gln) amidotransferase, A subunit | chromosome | CDS | 1018750 | 1461 | + | 0.502396 |
gatB | cbdbA1643 | glutamyl-tRNA(Gln) amidotransferase, B subunit | chromosome | CDS | 1329345 | 1479 | - | 0.486139 |
gatC | cbdbA1282 | glutamyl-tRNA(gln) amidotransferase, C subunit | chromosome | CDS | 1018463 | 288 | + | 0.482639 |
gltX | cbdbA1316 | glutamyl-tRNA synthetase | chromosome | CDS | 1046733 | 1464 | + | 0.510246 |
glyS | cbdbA765 | glycyl-tRNA synthetase | chromosome | CDS | 623514 | 1302 | + | 0.483871 |
hisS | cbdbA829 | histidyl-tRNA synthetase | chromosome | CDS | 675461 | 1239 | - | 0.48184 |
hisS | cbdbA7 | histidyl-tRNA synthetase | chromosome | CDS | 8331 | 1257 | + | 0.514718 |
ileS | cbdbA1012 | isoleucyl-tRNA synthetase | chromosome | CDS | 818031 | 3045 | - | 0.488013 |
infA | cbdbA461 | translation initiation factor IF-1 | chromosome | CDS | 377809 | 222 | + | 0.481982 |
infB | cbdbA947 | translation initiation factor IF-2 | chromosome | CDS | 773384 | 1782 | - | 0.464646 |
infC | cbdbA725 | translation initiation factor IF-3 | chromosome | CDS | 591192 | 474 | - | 0.457806 |
ksgA | cbdbA355 | dimethyladenosine transferase | chromosome | CDS | 302916 | 876 | + | 0.487443 |
leuS | cbdbA202 | leucyl-tRNA synthetase | chromosome | CDS | 183873 | 2442 | - | 0.510238 |
lysS | cbdbA555 | lysyl-tRNA synthetase | chromosome | CDS | 451191 | 1497 | - | 0.492318 |
map | cbdbA460 | methionine aminopeptidase, type I | chromosome | CDS | 377044 | 756 | + | 0.493386 |
metG | cbdbA334 | methionyl-tRNA synthetase | chromosome | CDS | 288140 | 1662 | + | 0.509627 |
miaA | cbdbA716 | tRNAdelta(2)-isopentenylpyrophosphatetransferase | chromosome | CDS | 581668 | 987 | - | 0.462006 |
miaB | cbdbA1340 | tRNA-i(6)A37 thiotransferase enzyme MiaB | chromosome | CDS | 1063370 | 1257 | - | 0.480509 |
pheS | cbdbA307 | phenylalanyl-tRNA synthetase, alpha subunit | chromosome | CDS | 265893 | 1041 | + | 0.492795 |
pnp | cbdbA932 | polyribonucleotide nucleotidyltransferase | chromosome | CDS | 761182 | 2163 | + | 0.488211 |
prfA | cbdbA1127 | peptide chain release factor 1 | chromosome | CDS | 917487 | 1068 | + | 0.496255 |
prfB | cbdbA543 | peptide chain release factor 2 | chromosome | CDS | 443182 | 1071 | + | 0.495798 |
proS | cbdbA310 | prolyl-tRNA synthetase | chromosome | CDS | 270155 | 1710 | - | 0.506433 |
pth | cbdbA576 | peptidyl-tRNA hydrolase | chromosome | CDS | 466126 | 570 | - | 0.517544 |
queA | cbdbA775 | S-adenosylmethionine:tRNAribosyltransferase-isom erase | chromosome | CDS | 632948 | 1032 | - | 0.48062 |
rbfA | cbdbA946 | ribosome-binding factor A | chromosome | CDS | 773028 | 357 | - | 0.459384 |
rfbA | cbdbA499 | glucose-1-phosphate thymidylyltransferase | chromosome | CDS | 402706 | 1203 | + | 0.503741 |
rimL | cbdbA264 | acetyltransferase, GNAT family | chromosome | CDS | 232115 | 636 | - | 0.485849 |
rimM | cbdbA540 | 16S rRNA processing protein RimM | chromosome | CDS | 441160 | 501 | - | 0.44511 |
rnpA | cbdbA1017 | ribonuclease P protein component | chromosome | CDS | 824238 | 363 | - | 0.465565 |
rph | cbdbA1225 | ribonuclease PH | chromosome | CDS | 985438 | 726 | - | 0.486226 |
rplA | cbdbA956 | ribosomal protein L1 | chromosome | CDS | 781890 | 714 | - | 0.483193 |
rplB | cbdbA442 | ribosomal protein L2 | chromosome | CDS | 367864 | 825 | + | 0.515152 |
rplC | cbdbA439 | ribosomal protein L3 | chromosome | CDS | 366289 | 618 | + | 0.511327 |
rplD | cbdbA440 | ribosomal protein L4 | chromosome | CDS | 366909 | 633 | + | 0.488152 |
rplE | cbdbA451 | ribosomal protein L5 | chromosome | CDS | 371817 | 540 | + | 0.464815 |
rplF | cbdbA453 | ribosomal protein L6 | chromosome | CDS | 372995 | 549 | + | 0.471767 |
rplI | cbdbA515 | ribosomal protein L9 | chromosome | CDS | 415387 | 456 | - | 0.451754 |
rplJ | cbdbA955 | ribosomal protein L10 | chromosome | CDS | 781208 | 531 | - | 0.45951 |
rplK | cbdbA957 | ribosomal protein L11 | chromosome | CDS | 782607 | 423 | - | 0.458629 |
rplL | cbdbA954 | ribosomal protein L7 | chromosome | CDS | 780803 | 372 | - | 0.483871 |
rplM | cbdbA469 | ribosomal protein L13 | chromosome | CDS | 381798 | 432 | + | 0.493056 |
rplN | cbdbA449 | ribosomal protein L14 | chromosome | CDS | 371127 | 369 | + | 0.468835 |
rplO | cbdbA457 | ribosomal protein L15 | chromosome | CDS | 374618 | 462 | + | 0.517316 |
rplP | cbdbA446 | ribosomal protein L16 | chromosome | CDS | 370183 | 450 | + | 0.542222 |
rplQ | cbdbA467 | ribosomal protein L17 | chromosome | CDS | 380666 | 354 | + | 0.474576 |
rplR | cbdbA454 | ribosomal protein L18 | chromosome | CDS | 373543 | 366 | + | 0.497268 |
rplS | cbdbA278 | ribosomal protein L19 | chromosome | CDS | 245996 | 396 | - | 0.487374 |
rplT | cbdbA723 | ribosomal protein L20 | chromosome | CDS | 590618 | 360 | - | 0.488889 |
rplU | cbdbA1270 | ribosomal protein L21 | chromosome | CDS | 1014151 | 399 | + | 0.498747 |
rplV | cbdbA444 | ribosomal protein L22 | chromosome | CDS | 369007 | 330 | + | 0.454545 |
rplW | cbdbA441 | ribosomal protein L23 | chromosome | CDS | 367554 | 285 | + | 0.431579 |
rplX | cbdbA450 | ribosomal protein L24 | chromosome | CDS | 371506 | 312 | + | 0.467949 |
rpmA | cbdbA1271 | ribosomal protein L27 | chromosome | CDS | 1014539 | 255 | + | 0.486275 |
rpmB | cbdbA1186 | ribosomal protein L28 | chromosome | CDS | 957864 | 189 | - | 0.486772 |
rpmC | cbdbA447 | ribosomal protein L29 | chromosome | CDS | 370634 | 198 | + | 0.434343 |
rpmD | cbdbA456 | ribosomal protein L30 | chromosome | CDS | 374436 | 183 | + | 0.409836 |
rpmE | cbdbA1272 | ribosomal protein L31 | chromosome | CDS | 1014800 | 207 | + | 0.483092 |
rpmF | cbdbA1203 | ribosomal protein L32 | chromosome | CDS | 971056 | 219 | + | 0.520548 |
rpmG | cbdbB20 | ribosomal protein L33 | chromosome | CDS | 783870 | 168 | - | 0.440476 |
rpmH | cbdbB22 | ribosomal protein L34 | chromosome | CDS | 824659 | 141 | - | 0.553191 |
rpmI | cbdbA724 | ribosomal protein L35 | chromosome | CDS | 590996 | 204 | - | 0.47549 |
rpmJ | cbdbA462 | ribosomal protein L36 | chromosome | CDS | 378059 | 114 | + | 0.412281 |
rpsB | cbdbA322 | ribosomal protein S2 | chromosome | CDS | 278605 | 738 | - | 0.47832 |
rpsC | cbdbA445 | ribosomal protein S3 | chromosome | CDS | 369345 | 837 | + | 0.491039 |
rpsD | cbdbA465 | ribosomal protein S4 | chromosome | CDS | 378999 | 624 | + | 0.488782 |
rpsE | cbdbA455 | ribosomal protein S5 | chromosome | CDS | 373925 | 519 | + | 0.485549 |
rpsF | cbdbA1020 | ribosomal protein S6 | chromosome | CDS | 825771 | 330 | - | 0.445455 |
rpsG | cbdbA435 | ribosomal protein S7 | chromosome | CDS | 363340 | 471 | + | 0.498938 |
rpsH | cbdbA452 | ribosomal protein S8 | chromosome | CDS | 372584 | 396 | + | 0.517677 |
rpsI | cbdbA470 | ribosomal protein S9 | chromosome | CDS | 382242 | 399 | + | 0.503759 |
rpsJ | cbdbA438 | ribosomal protein S10 | chromosome | CDS | 365972 | 309 | + | 0.433657 |
rpsK | cbdbA464 | ribosomal protein S11 | chromosome | CDS | 378597 | 393 | + | 0.531807 |
rpsL | cbdbA434 | ribosomal protein S12 | chromosome | CDS | 362892 | 435 | + | 0.514943 |
rpsM | cbdbA463 | ribosomal protein S13 | chromosome | CDS | 378182 | 390 | + | 0.471795 |
rpsN | cbdbB14 | ribosomal protein S14 | chromosome | CDS | 372365 | 186 | + | 0.505376 |
rpsO | cbdbA931 | ribosomal protein S15 | chromosome | CDS | 760877 | 264 | + | 0.465909 |
rpsP | cbdbB15 | ribosomal protein S16 | chromosome | CDS | 441991 | 249 | - | 0.485944 |
rpsQ | cbdbA448 | ribosomal protein S17 | chromosome | CDS | 370839 | 273 | + | 0.417582 |
rpsR | cbdbA1018 | ribosomal protein S18 | chromosome | CDS | 824835 | 444 | - | 0.515766 |
rpsS | cbdbA443 | ribosomal protein S19 | chromosome | CDS | 368695 | 282 | + | 0.475177 |
rpsT | cbdbA1738 | ribosomal protein S20 | chromosome | CDS | 1392931 | 267 | + | 0.509363 |
rpsU | cbdbA293 | ribosomal protein S21 | chromosome | CDS | 257583 | 195 | - | 0.553846 |
serS | cbdbA554 | seryl-tRNA synthetase | chromosome | CDS | 449918 | 1242 | - | 0.487118 |
tgt | cbdbA68 | queuine tRNA-ribosyltransferase | chromosome | CDS | 45051 | 1179 | + | 0.514843 |
thrS | cbdbA726 | threonyl-tRNA synthetase | chromosome | CDS | 591816 | 1749 | - | 0.471698 |
trmD | cbdbA279 | tRNA (guanine-N1)-methyltransferase | chromosome | CDS | 246515 | 747 | - | 0.515395 |
trmU | cbdbA754 | tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase | chromosome | CDS | 616344 | 1074 | + | 0.460894 |
trpS | cbdbA1293 | tryptophanyl-tRNA synthetase | chromosome | CDS | 1024935 | 972 | - | 0.502058 |
truA | cbdbA468 | tRNA pseudouridine synthase A | chromosome | CDS | 381056 | 741 | + | 0.48583 |
truB | cbdbA945 | tRNA pseudouridine synthase B | chromosome | CDS | 772123 | 903 | - | 0.465116 |
tsf | cbdbA320 | putative translation elongation factor Ts | chromosome | CDS | 278077 | 504 | - | 0.513889 |
tuf | cbdbA960 | translation elongation factor Tu | chromosome | CDS | 784039 | 1203 | - | 0.489609 |
tyrS | cbdbA583 | tyrosyl-tRNA synthetase | chromosome | CDS | 473664 | 1191 | - | 0.481108 |
valS | cbdbA384 | valyl-tRNA synthetase | chromosome | CDS | 323537 | 2643 | + | 0.50927 |