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Gene list

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COG category: Carbohydrate transport and metabolism
Gene type: CDS
Genomic element: chromosome 2

Number of genes found: 22

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# Photobacterium profundum, ss9

>PBPRB1516 Hypothetical altronate oxidoreductase
MKTLNRKQFDLPKYTTRALQFGEGNFLRGFLDWQIEKLNRTTNLDMGIAV
VRPIDSDFPALLNAQDCLYTNIIRGLDENNQPVEETTIISSINTEIPLYQ
DYDAFLALAEDANIKFIFSNTTEAGIEFNAKDSFSDSPPSTFPAKLTQWL
ARRYLVLENNNLEGLYIIPCELIDYNGEKLKQVILQYIDLWRLDESFRVW
VEQKITFCSTLVDRIVTGHPREELPSLEEKVGYHDQFMVTAEYFYLFVIQ
GPKDLIKDLKLEGQNLNIKIVEDIKPYKERKVAILNGAHTAMVPVAYMSG
LNTVGEAMNCRLISQFVENLIDEEIIPVLSLPKDELSQFAHDVIKRFKNP
YIKHQLTSISLNSMAKWKTRILPQLIANTEITGSAPKLMSLAFAAQILFY
RGIRNDQAIPLNDQENWLLFFKQSWSDVDNGKLSLNELVEKICANENHWE
FNLNALPLFTEQVTGFLQEMLHEGVASVLSKELGA
>PBPRB1341 conserved hypothetical protein
MRIWFGCVAGLAVTLLFGWSYGLFAALLPLFVLTQIDQWNSGILIQLVLG
IVWVSIQVTFIVGFFQPYPVLMTLAVGILLMAKCIAMTHKSSYLFGYTGL
LIGSILLNFGSFNSFDIEEFVMGLWASALVTAPIVAMALYLFPEKSSSTL
VGISPSDSIEKENANTSNKEACTSTASERKIHISNQRKDDIGRVRQAALG
WIVAMAAFILFQVADLSDSLSAQASIFIVLTPMTLIGSLGAAKIRIIGTF
LGCLAGMMVQLSLYTLSNNGVLFLMAYAIAAGIFCKWLASGTIKASIGFS
AMSALTVPLTTSFVPEQQDAFFSICYRFSSIFVAVIGTSLAIWIGHHLLV
RLIQFKEPQCN
>PBPRB1511 ATU3137, Hypothetical dicarboxylate-binding periplasmic protein
MRQPPCQMVQNGTIAFTKVGASLLEQFSDSYKILSLPYLYRDLDQYYNVL
NGPIGAEILESSRDKGFIGLAFLDAGSRSFYTNKLIKTPNDLKGMKIRVQ
NSPLSIDIVKALGATPVPLPYGELYSALQQGVVDGAENNIPSYLSSRHFE
VKKVYSYDRHTMVPDVLVVSTSVWDSFSEEDKQKLRKIAAKTVGYHKKNW
NEYVTKAKVKLVDQGVVFVDSDVHAFQAAVAPVYDKFKAEYPNFVAMLTD
IQNTK
>PBPRB1514 C3755, Hypothetical TRAP-type C4-dicarboxylate transport system, small permease component
MNISTLTQMVNRVLVSILILFMGLMVLTVIWQVFTRFIINDPSVFTDELS
RYLLIWIGILGGAYTFSVKRHLALELLASRLSYKRKQLQSIFINILIIVF
TYISLVYGGSQYALTTIAHQQVSPGLSIGEYKLLIGYVYMVIPISGVLII
FYGLLDILESFKNINSNMSGEE
>PBPRB1513 C3756, hypothetical protein
MTLLDLIFSAEYINTMPDYIYDILPIAVLFGALAILLLVGMPIAFAIGSA
ALLTIFIDFPIDKASVLVSQQLANGLNSFRSIGFAFFHHCR
>PBPRB1512 C3756, Hypothetical TRAP-type C4-dicarboxylate transport system, large permease component
MAIRLINFAMLLGGRLPGSLSHVNVIANMMFGSLSGSAVASAAAVGGIMS
PLQKKHNYPKAFSTAINVASCPTGLLIPPSNILILYALVSSTSVQYLFIA
GYIPGILMGLSIMVGIFLLGKRYNIPQQKIVIEKSATKVIFDAIPSLLLV
LIIMGGIIGGVFTATEASAIAVMYALVLGFVYRELKIADLPSILLDSVLT
TSIVLLMIATSSAMSWGMANADIPNAIADFVMNYSSNPIVVILLMNLVLL
VVGTFMDMSPAVLIFTPIFLPIAVLLGIDPVHFGIILVFNLCIGICTPPV
GTALFVGCSVSGNNLGEVVPKLLPLFFLMVLTLGVIVAFPSLTMWLPKLA
GYKS
>PBPRB1556 C4676, Hypothetical ribose ABC transporter protein
MKKNALINAELSYVVATLGHTDEITICDAGLPIPDETQRIDLALIPGVPT
FIDTVKAVLGEMQIEGVVMAEEFAQVSPDLHQALIALIRNEELLCGKKIT
LSYVSHEAFKVHTQDSKAVIRTGECTPYANVIFQSGVVF
>PBPRB1536 CT0995, Conserved hypothetical protein
MKTRPRILIVGSTGYLGSHIVKQLIAENVAFKAIARNKPKLLSLGARDNQ
VIEAQVTAPEELYGICDEIDVVISCLGITRQRDGLGYMDVDYQANLNLLQ
EAERAGVSKFIDVSAFNAEKYPSVRLLKAKERFALRLLGSENLTPCVIRP
NGFFSDLEEVYQMAKAGRVYLFGAGDVKMNPIHGEDLAKFCFEAIDRDER
ELDVGGPEVLSGKDIAKLAFLAQNKPEQITCLPDWLRGLILSVVKRLPEK
WGGPVEFFLTVMGLDAIAPRHGTNRLGNYFMKLADNR
>PBPRB1584 CV0979, putative PTS system, glucose-specific IIBC component
MFGKAFGQLQNIGRSLMLPVAVLPVAGLMLGLGNAGFAFIPEALSKVMLA
AGDGVFSNMQLMFAVGVALGLSKGNDGAAALAGVVGLIIMNASLGVVTGL
RGFETDATIMGVNTLQTGVFGGIIMGAVAALMFNRFYNIRLPEYLGFFAG
KRFVPIITGLVAIVVGAFLAFAWPPVGQLLDAFSHWAAYQNPVLAWSIYG
AGERSLLPVGLHHIWNAPFFFEVGSYTDPETGKVITGELSRFFAGDKTAG
YLSGGFMYSMWALPAAALAIYHCATPSRKKVVGGLMASAALTSWLTGITE
PIEFTFLFVAPVLYVIHVFLTGIAFAITAFLDIKHSTDFAHGAIQFFLYY
PMSNNAWMFVIIGPIWAALYYGLFRFLIVKLDLKTPGRESDPVKVEMAGA
PDEIATDIVMALGGKPNIKSVDACITRLRVTVKDINEVDIVKLKQLGAHD
VLVIGDNLQAIFGTQSDNIKTEINGVLATI
>PBPRB1557 ECS4691, Putative ribose ABC transporter
MNQPILELKGIEKAFPGVKALDNACLNVYPGKVMALMGENGAGKSTLMKS
LTGIYAMDAGEIRYQGKAVNFDGPRHSQEAGISIIHQELNLIPELTIAEN
IFLGREKTNAFGGIKWAEMFREADDLLKRLNVKHHSRQLLGELSLGEQQM
VEIAKALSFKSQVIIMDEPTDALTDTETESLFKVINELRAEGCGIVYISH
RLKEIFEICDDITVLRDGKFIGERAVADTDEDGLIEMMVGRRLDEQYPRI
DVRHGETCLEVTNLTGAGVNNVSFKLDRGEILGVSGLMGAGRSELMKVIY
GALKRESGDIKLNGKTINPVTPQDGLANGIAYISEDRKGDGLVLGLSVKE
NMSLCSLEQLSKGVQLKHYEEVTAVEDFIRLFNIKTPTRDQIIGNLSGGN
QQKVAIAKGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGMSIIL
VSSEMPEVLGMSDRIIVMHEGRISGEFMAADANQEKLLACAVGKTTEQNN
EVAA
>PBPRB1409 GNTP-2, putative DsdX permease
MISRWVSSRVLLLTKTAAELNMDHGTTVYTILEFLGNPITAMFIAAFVAY
YIFGIKQNMGMSVLLEKTEGAFASIANILLIIGAGGAFNGVLKGSGLADV
LAQILFNLDMHPILLAWLVAIILHAAVGSATVAMMGATAIVAPMLPLYPD
ISPEIITLAIGSGAIGCTIVTDSLFWLVKQYCGASMSETFKYYTTATFIA
SFVALGGTFLLSYII
>PBPRB1558 PLU0057, Putative ribose ABC transporter, permease protein
MSSNAMTKTDDSKNKTGKLFTKEWLIEQKSLIALILLIVVVSFLNPNFFT
VDNILNILRQTSINAIIAVGMTLVILTAGIDLSVGSVLALCGAFAATMIG
LEIPAIIAVPTALLAGAALGAISGIIIAKGKVQAFIATLVTMTLLRGVTM
VYTDGRPISTGFTEVADGFAWFGTGYAMGIPVPIWLMVIVFASIWYLLNH
TRFGRYIYALGGNESATRLSGINVDRVKIGVYAICGLLAALAGIIVTSRL
SSAQPTAGMGYELDAIAAVVLGGTSLAGGKGRIMGTLVGALIIGFLNNAL
NLLDVSSYYQMIAKAVVILLAVLVDNKNK
>PBPRB1330 S4325, putative maltodextrin phosphorylase
MTTRGQTQQFDKALFKASVEKHLVTTYAKTPETADSRSWYLAVGKALAEI
STGSLLETEKQLAEQNVRSVNYLSLEFLIGRLTGNNLISMGLYEEVSAAV
EELGLNLTDLLEEERDPALGNGGLGRLAACFMDSLAAQEYPAVGYGLHYE
YGLFSQSFEGGHQVEAPDAWRGIEGYPWEVVRPELGQTVGLFGSVETYTD
KAGTICRRWVPAMTVEGVAWDLPIVGYDNKSVYPLRLWECRSPAPFNLAR
FNDGDYVGAQYGQLEAGNVTKVLYPNDNHDQGKTLRLMQQYFHCACSIAD
ILRRHFAAGNKIEDLAKLESIQLNDTHPTIAIPELMRILIDEHKLGWDAA
WAISSKVFAYTNHTLLPEALERWSESLIADMLPRHMEIIFEINHRFMTLV
EEKWPGNNEIKRKLSIIEEGQQRMVRMANLCVVSTYAVNGVAALHSELVK
RDLFPEFNELFPGRLHNVTNGVTPRRWLKFCNPGLTELVNEKIGTEWPAK
LDQLSGLAKFAEDKKFQKRYLAVKKDNKQRFADWVQDNMGIELDTNAIFD
VQIKRLHEYKRQHLNLLHILSLYHRLLNEPTFDMHPRVFIFAAKAAPGYA
LAKDIIFAINKVADKVNNDPRLGGKLKVVFVPDYRVSLAEIIIPAADVSE
QISTAGLEASGTGNMKLALNGALTIGTMDGANVEIREEVGDENIFIFGLL
VDEVLKQKEEGHDPYRYYHADSLLRASLDLLNTDEFTPGNPGQLSAIRQN
LLDGGDPYLVLADFADYVKAHEKIDAEYRDQATWARKTILNTALVGKFSS
DRSIRDYVNNIWKLKAVSVK
>PBPRB1517 SF3131, Putative altronate hydrolase, uxaA
MPDMKAWIKVNKKDNVIVALKRLHSNTNIVISGRKISLKQEVEKGHKIAV
SDIKQGQMLIKYGEYFGHATKNIDAGEWVHSHNVKTNLHNKNNYQYTPVS
AAVLNRSLDRNVQIYRRANGDVGVRNELWIIPTVGCVNGIAQMIVKAFMA
QYDTSIIDGVHIFTHQFGCSQLGDDHIKTKQLLQNMVTHPNAGGVLVLGL
GCENNQITPFKQGLKGIDESRIQFMVAQHHNDEIQAGVDHLASILESMSG
DKRVEGKLSELRFGLECGGSDGLSGITANPLLGAFSDTVIANEGTTVLTE
VPEMFGAESLLMNRAKNKEVFSKIVDMINVFKDYYLQHNLPIYENPSPGN
KAGGISTLEDKSLGCTQKAGTSQIIDILEYTQKISKSGLNLLSAPGNDAI
ATSALAASGCQLVLFSTGRGTPYGGFVPTVKIATNTDLAKRKPHWIDFNA
GVLISEDIDMGSLLNLFLDKVATIASGELTKNEVNDIRELAIWKNGVTL
>PBPRB1560 SF3835, Putative ribokinase
MNKLVVLGSVNADHVLQVASFPRPGETLHGHSYCVIPGGKGANQAVAAAR
LGADIAFIASVGDDSFGHQMLEAFANEGMNTEAVMVEENMPTGIAMIQVA
ATGENSICISAEANACLTAERIKPHHALIANANTLLMQLETPIETIEAAA
TIAKQSGTKVVLNPAPAQPLTDDLLQLVDMITPNETEAELLTGIKVEDMA
SAQQAADTLHAKGIKCVMITLGSKGVWISQDGKGQQVEGFRVDATDTTGA
GDTFNGALLTGLQAGRKMDDAIRFAHAAAAISVTRMGAQTSIPHLSEVER
FLTEHS
>PBPRB1412 SMC01583, hypothetical glucose dehydrogenase
MKMPQQISVLILTLLAANTAHAYEAEKVTSGLNIPWGLAYIDDSTMLITE
RNGAIKHINLVTGKQQTLAEIPNVWAKGQGGLLDVALSPFDENKIYVTYS
KNINGKSVTTLASAKYRNEVLSDWEDVFISISQTDTSRHFGSRITFDNNS
LYFSIGDRGERENGQNTMNHAGSILRLNPDGSTPTDNPYVNNKAILDEIW
SYGHRNPQGLFFDPNTQRLWSIEHGPRGGDEINLIKKGSNYGWPITSHGK
EYWGPISVGEATEKEGIESPVKVYIPSIAPGSLVLYQGEKFPELKGKLLS
GALKLTHINIVTLNNEGKAIAEDRILSELGERIRDIEVSPEGEIFFSTDN
GNLYKLKQ
>PBPRB1515 UXAC, Hypothetical uronate isomerase
MRTNGVNERFCTGNASDKDKFTEWAKTVSQTIGNPLFHWTHLELRRPFGI
TDRVLSLETADSIWNECNAMLETPEYSAQSLMKKMNVRMIGTTDDPIDDL
SAHKSIAGNKDFNVKVLPSWRPDRSFNINASDYAHYLEQLGDAADVYIIK
YNQLCDALINRLDHFQSHGCCISDHALDTVEYEESTEGELDAILALRLQG
KTVSMKQAAQFKTAVLILLGKEYARRGWVQQYHIGALRNNNQRMLSILGP
DTGFDSINDGLIAAPLAKLLNALDATDSLPKTILYCLNPRDNEVIATMCG
NFQGGGIAGKIQFGSGWWFNDQKDGMVRQMEQLSQLGLLSRFVGMLTDSR
SFLSYTRHEYFRRLLCRLLGQWVADGEVPHDMTLLSKMVEDICFNNANNY
FNLGLEK
>PBPRB1587 VV1092, putative binding protein component of ABC sugar transporter
MHWIIKTALLTTLLHFTPVRAEIELLHWWTSKGEIKALNTIKKQLNDHDY
QMVSTSVIGGGGDTATTVLQARALAGNTPNIAQIEGPSIKAWDAIGILHD
LNNTAKKHQWNETLNPLAKEINQTENGYVALPLTLHRMNWLWVNHDLLTQ
LALDVPVTWPELFIAMDKAKRHHIEPLAIGKQPWQIAQLFESLVIAYGGV
DFYQQAMVNLDKTAISSQEMQEIFKQFRRLSLLVGEQLADHKWETATQYL
AQDKSLFQIGGDWVLGELIALNIDVPKKIGCYVAPQTQGVFLYNMDSFIF
MSRPDFTVQQANDLANVLANKTFQSQFNKVKGAIPVRNDIDLSGFNVCQQ
QASQDLEFALIHKLAVPSMTDSMAVNPIKQQAINNELFQFFKNDSIDSKA
VIRRIIAIASSDN
>PBPRB1506 VV20937, hypothetical protein
MKNKTFPYLSGRFFDGISSGLFMMALPWIMLKEPNMGTFVALTALVCTTL
SFLCTPFFSIMTDRHSRKVILILVQIIQSITAMLVGIAYWFDLGSQWLLA
FSQLVFWVSSNIAWNANNAFTQENYAQHEYAKISGYQEVVMQSTTLGAGA
LGIILLEMWGIVEFAAFAAVASGIAAFSYVITPYNRQVRPSFKTSFIKQL
KESKDICTQNPTFYGFLLISCLSYPILTFLGKLVPIWFAELHISGNWIAW
YNIAFGLGSLMTGLLVSRILALVSHRYIMQYSMIILALTLLAMSGMMQPL
YIIVLTIFFGFFNALNRIARTNWMHHTIPMSQRGRVDGGLAMFATLVQSL
SYVLIALLAHVNAIEYGFIIVGLAVLFASCCMMVLGNKIEEKPNIAIER
>PBPRB1329 VVA0078, putative 4-alpha-glucanotransferase
MKDDQVLKQVAEMAGLADSYVSAWGDEAQVENETLRRLLSALGYDTKNDD
ALMESALKRQRPDVLAPVKVVRNGEPMHITLHLGVSARTSDFSWKLTTEQ
GVVMEGWLQSQLISDDRENGGPLVFALPDDLAWGYHKLEVFRKRRKSPFE
MTLIVTPASCYKQQALLDDKKLWGTSVQLYSVRTNYNWGIGDFGDLKQLV
ADIAARGGDFVGLNPVHSLFPANPEGASPYSPSSRRWLNLMYIDVSSVSE
FAQCDEAQQLVGSAQFQQRLVEARNTNWVNYSEVSCLKMAVLPLLFDTFS
ERHLDNNTERAKQFLQFVEEGGDSLLHQAAFDALHADLKKKDDNTWGWPV
FPEEYRHFDNAAVKTYIKDNAKQVKLYMYLQWLADTQLAEVNELAEEKGM
AMGLYRDLAVGVCDSGAETWADHGALCQDVSVGAPPDILGPLGQNWGLPP
LNPEALKETAYEPYIQLLRANMRNCGALRIDHVLGLLRLWWIPKGELATQ
GAYMYYPVDDMMAILALESHRFQCTVIGEDLGTVPDEIIGKLSTAGIHSY
KVFFFETAEDGGFYSPAHYPSQSMAALCTHDMPTLRGFWHCDDLKMGEEL
GLYPDKEQLAGLFASRAESKQKILDSLDWHGYLPEGVGHDASYVPMDLRL
SEGMQMHLAASSSALLSLQLEDWLEMDKPVNIPGTVDEYPNWRRKLSTTL
DDLFTRQDIIDLTRRLTDARGKAS
>PBPRB1328 VVA0079, putative 1,4-alpha-glucan branching enzyme
MQLERAAFSDPFSFLGPQYQSKGIALRVWMPGAVSMVVEIENGEKFPLTR
EDESGFVLISKMDLTAAVYKLHISWPTGEQTIHDPYQFHGFMPSGDALVS
PSKMHSEMGAQLISLNKGGQPISGVRFLTYAPNASAVSVIGEFNAWDGRR
HPMQRLDDGLWGLFIPDLEDGTQYKFELKDSSGNSLPHKADPWGYSSEQY
PSFTSIVYDQSRYQWQDKAWQTRPVSVKHQEALSFYELHAGSWRRNEQGD
FLTYRELAEQLIPYLSEMGYTHLELMPVSEHPFYGSWGYQPIGLFSPTSR
FGTPDDFKYFVDQCHLAGIGVVLDWVPAHFPSDDHGLANFDGTALFNDPD
PRRGWHQDWKSYIYDYGRDHVRRFLISNALFWLEHYHIDGLRVDAVASML
YLDYSREHDQWIPNHDGGNQNYDAISLLRWMNEEVYSHYPNAMTIAEEST
AFSGVSRPTDMGGLGFGFKWNMGWMHDSLSYIQEEPVHRKFHHNTITFPL
IYAFSENYVLSLSHDEVVYGKGSLLDKMPGDEWQKSANLRTYMGYMYGQP
GKKLNFMGAEIAQSAEWSHDGQLEWHWLEYPRHNGMKKLVSDLNHLYQDL
PALHELDCSPEGFEWRVQDDAETSVLAHERFALNGDKVLVVSNFTPVPRE
GYTLGVPAEGEYEVLLNTDAEKYWGSGTPIQQTVKTQLLEKHGLAQSISL
DLPPLSTVFLAFKQHA
>PBPRB1559 Z5252, Putative ribose ABC transporter, periplasmic D-ribose-binding protein
MKKLATLISAAVLSASFSTTASAQDTMAMVVSTLNNPFFVTMKEGAEAKA
KELGYNLIVLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRM
ANRANIPVLTLDRGASRGEVVSHIASDNVAGGEMAGKYIMEKVGEKARVI
QLEGIAGTSAARERGQGFMQAVDTYKMDLLSSQPADFDRTKGLNVMENLL
AANPDVQAVFAQNDEMALGALRAVQASGKDILIVGFDGTEDGLAAVKRGK
LGATIAQQPGLIGALGVETADKVLKGESVEKSIPVPLKVVTK