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Gene list

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COG category: Amino acid transport and metabolism
Gene type: CDS
Genomic element: chromosome 2

Number of genes found: 21

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# Photobacterium profundum, ss9

>PBPRB1647 hypothetical threonine efflux protein
MDDYPVLLSAMAICLFGVMSPGPSFVAITNKALTSEREQVLWLTFGIALV
NALWAILAMFGLKALMLQLPWLLLLIRVFGAVYLIWFGLRLLRMPSTSLE
PSSKGGATKNASRRTSFGEGLLANFSNPKSLLFYSSVFSVAVPESATQSL
LIALVFVVFTISIAWYGSLAVVLTTSRIRRLYLNAQNVIQKTCGGLLIIF
GGRQLF
>PBPRB1706 hypothetical protein
MVSCKINLSLVQKDIDGNLKLMNLPTTKTVAGSAALVWAMIDRIDKTMAI
SGGAVKPLKMSAVARTGTVGAGLYASFWAGAVIGSTVRAIYKNTDCTHSQ
VMAFAKRSGVTGRWLQTTYAMYPELLNG
>PBPRB1744 AGR_C_41, putative glycine betaine-binding ABC transporter
MKTNTAIKHTIISSTALLLSFSASTAFAAQCDTVRFSDVGWTDITATTAV
TSEVLKGLGYQTSTQLLSVPVTYSAMANKDIDVFLGNWMPTMEADIAKYH
QDGSVETVRANLEGAKYTLAVPKYVYDAGVRSFADLAKHKDEFRGRIYGI
EPGNDGNRLIQDMLDQNAFDLKSFRLVESSEAGMMSQVKRAVDREQWIAF
LGWAPHPMNSNFDMVYLDGGDDFFGPNYGGASVHTNVRQGYLKTCSNVGQ
LLQNLSFSLEMESQLMGNILDDKAKPDAAAKAWLKANPQILEQWLDKVTA
RDGSNADEAVKTYLNI
>PBPRB1743 ATU2280, putative permease of ABC transporter
MDFITEHKIPLGEWMATFVDWLTYNASGFFDSLSYTLESMIMLLVDLFKW
FPPAVPIVMTALLAWFLHRSLSLVIFVVAALLLIMNLGYWEEMIETFVLV
LSATMFSVIVGVPIGIAAAHRPWLYTIMRPILDLMQTIPTFVYLIPTLVL
FGLGVVPGLISTIIFAIAAPIRLTYLGISRVPEELVEAGRAFGASRMKLL
FKVELPAAMPNIMAGITQCIMLSLSMVVISALVGADGLGKPVVRALNTVN
ISQGFEAGLAIVLVAIILDRLCKTPASQSREG
>PBPRB1813 CV0173, hypothetical 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
MAIHPSVMRTTTCRRLPSPAELLSDYPCKADTEHHIMTSRNDVRDILHGK
DDRLLVVIGPCSIHDPDAALAYAKQLKPLVEQFSDHLHIVMRTYFEKPRT
TTGWKGLIFDPHLDNSNDLITGLTTARQLVLAINELGVPTSTEFLDNTSF
LYLADLMSWGAIGARTTESQVHRQLTSGLPCPVGFKNGTDGNIRIATDAI
LSSQSPHLYTVTGHDGHLYAVESTGNADCHIILRGGQEPNYSPGHIQAAS
KALYQAKLPVSIMVDCSHGNSQKRHKNQLVVAQSLCEQLSQGEQAITSIM
VESFFEEGSQAISANMTYGQSVTDACINWSDTEILLNQFAAAIATRRALY
QSASPVAMHG
>PBPRB1789 HISW, putative permease
MSDKSWLTEIPQLDRYQLLEIRKTLDGAYRSFSREYGDNIEAFFDPLLSF
LIWFEKLLLGTPWWIVIGVLAGFAFMASRSWKLTVGVVVAFTLIGVFGMW
DNTMRTMSIILVSTMVAIGVGIPIGIAMARSNRVQSVVTPMLDIMQTMPA
FVYLIPVVMLLGIGKIPGVIAVVIYAVPPVIRLTNLGIRLVDEEVLEAAT
AYGASPMQRLFGVQIPLAMPNIMAGINQTIMMALAMVVIASMIGVKGLGQ
PVLKSITNQYFTLGLLNGLAIVALAIIFDRISQGYAKRTQQHLGGR
>PBPRB1742 MLL2742, putative ATP-binding component of ABC transporter
MSAISIKNLDVIFGKQTAKSLAMLDDGKSRQEIIDATGDVVGVHDVSLDI
EKGEICVLMGLSGSGKSSLLRAINGLNTVSRGSLNIQDGDEPINLANCDK
AALRHLRTNRISMVFQKFALMPWLSVLDNAAFGLEMQGISKAERRRRAEE
MLEMVGLAEWQNNYPHELSGGMQQRVGLARAFTMDSDILLMDEPFSALDP
LIRSQLQDELIELQRTLNKTIVFVSHDLDEALKLGNKIAIMESGRLIQHG
KPEEIVLNPNSAYVAEFVAHTNPLNVLCGRSLMTEVTALESQDSKLVLSQ
HDETYISTDPQGHVTSVTRQGKALPLHLWQAGDCFEGLKQDSLVIANPDI
SMREGLEIRYRTGQPVLLVEDGPLIGVLADNNFYHALLGKHISLETETST
>PBPRB1788 MM0040, putative glycine betaine ABC transporter ATP-binding protein
MTDKSQIKPLIRVKNLYKVFGPNAKAVLKQVKAGKSKEDILAETGHTVGL
CDINLDINPGEIFVVMGLSGSGKSTLIRHFNRLIDPTEGVIEIAGTDVMS
LNEKGLQDFRRHKMSMVFQRFGLMPHRTVLQNIGYGLQIQGLSKNDWEAR
AHEWLETVGLGGYAKQYPSQLSGGQQQRVGLARALCTDADILLMDEAFSA
LDPLIRSEMQDQLIELQEKLHKTIVFITHDLDEALRLGDKIAILRDGVLV
QQGEPVDILLNPADDYVEAFVKDVNRARALTVETVMKPQVVRISAETIGE
AVAEMRKAKDDYGYFINDEGYQGVITQETLENVKKADYGNAIDESMLEDV
PSVQTDALLEAVIPETLESDHPLPVLNAEGEVEGRLSRSTLAEVLSEQST
ASDKETDSDTKKPFSNKDDTSGNNKAA
>PBPRB1848 PLU3991, putative sodium/dicarboxylate symporter
MSQTQPFLARVANGSLVIQIIVGIVAGILLASVAPESAISVGFLGGLFVS
ALKAVAPILVFILVASSIANQKKGAHTNMKPIIMLYLFGTLMAALTAVVM
SFLFPTTLTLVAGNATASPPEGIAEVLNTLLFKIVDNPVNALMSGNFIGI
LAWAIALGFALHQASDATKQVFHDMSNGVTSIVRFVIRLAPIGIFGLVAN
TFAETGFAALAGYAHLLAVLLGSMAVIALVVNPAIVFFKTKENPYPLVFR
CIRESGITAFFTRSSAANIPVNMQLCKDLDLHEDTYSVSIPLGATINMAG
AAITITVLTLAAVHTMGVEVDIATAVLLSVVAAVSACGASGVAGGSLLLI
PLACSLFGIPNEVAMQVVAVGFIIGVIQDSAETALNSSTDVLFTAAACKA
AEAKVASPNIA
>PBPRB1890 PSPTO114, conserved hypothetical protein
MEIVGLLLLGILIVISPGADFVLVVKNSLANGRRAGLLTACGISTAIGIH
VGYSMLGVGYLISQNEVLFSLVKYAGAGYLFYLGITALFTRTSVMLEKGH
TTDLSGAAYWRQGFFCNLFNPKTMLFFISLFSQIITAEGSSPVLAVLYGG
YLALLHCLWFGLVAYALSSPAFEGYVNQWKQQIQQLCGVGLMGLSVALVL
KS
>PBPRB1790 RA0951, hypothetical ABC transporter, substrate binding protein
MRKILAASLVLATASFTVSAEECGKVTIADMNWNSATLIANVDRFILDHG
YGCDAELVPGDTMPTGSSMVEKGQPDIAPEFWSNSMKAALDKGVEEGRIR
YAGSSLSEGGEEGFWVPAYMVQKDPTLATIEGIKANAKLFEHPEDPDKSA
FMTCPAGWNCQISAGHLFNALELDKSGFDLIDPGSGAGLSGSIAKAYERE
EAWFGYYWAPTAVLGKYKMVKVDFGSGIDEKQFTDCISNEDCLDPKPTMY
PPSPVDTVVTETFAKRAPAAMEYLSIRSFTNAKMNALLAWMEDNQADGEF
AAEHFLNENPDIWMTWVSPETADKVKKALAAL
>PBPRB1853 SCO1054, putative NifS-related protein
MLFTPNAVRPAFPALHQTVNNKPVYFFDGPGGSQVPQPVLDAMVGYLGHY
NSNLGGSFFSSSVTVSLMQEARISAQALLGAASPNNIIFGANMTSLTFQL
SRAISRDWQADDEVIVTALDHYSNVSSWQQAAEDKGVIVHQVRVNEDDCT
LDYDHFESLLSDKTRLVAVTYASNTTGSLVDVKRLINAAHAVNAQVYVDA
VHYTPHGLVDVQDLGCDFLVCSAYKFFGPHVGIAYIALQWLQTLQPYKVE
PATDEGPGRFETGTQSFEALAGFVAAVDYLAQWGDQDASLRQRLLASFVQ
YQEHEKALSHHFLSKLAEFDNVSLYGINSPNRLSERTPTFAIRIDDVMPS
DVAAHLGENNMCVWNGHFYAQGLCKQLGVMDNGGVIRIGLMYYNTIDEID
SLFTELAPFLIKK
>PBPRB1592 STM1598, Hypothetical transcriptional regulator
MAPQQTRYHAVATEIQQQIEQRIWLPGDRIPSIRVMTKKHSISPMTVLKA
YELLETEGWIYAKPKSGYFVTAHLNRLAEPQQMMPQVVNRSIKINAHIFD
VLTACKRPDVMPFGSAFPDPDLFPLKQLGRALAQTMKTMPAQSTVTDLPP
GNIALRRAIAKRYIRDGIDVSINDIVITSGAMESLGLSLMAVTQPGDTVA
IESPAFYGALQAVERLRLKAVEIATHPRTGMSVNALEAAIKTHDIKACWL
MSKYQNPLGASMPDENKIAINNLLMKNTIPLIEDDVYNELYFSESKPTPI
KAYDNKRMVLHCGSFSKCLAPGFRVGWVVAGQYAKQIEQLQLMSTLSTAV
PNQLALAQYVLHGGYDIHLRRLRRQLKARQQQMLDAIEQYFPRETQITRP
EGGYFLWVVLPKHINTSDLLQQLLDVHNISIAPGSLFASDDRYKNCMRIN
CSYPWNERTQQALKTVANCIKK
>PBPRB1850 T0506, hypothetical amino acid racemase
MRTISMPRLEIDLDKIYHNAHTLVDRLACRGISVTGVMKASLGSPEIARV
LLSAGVNMIGDSRIENIETMRRAGVAAPMILIRSPMLSQVDRIVTHADLS
LNTELDVISKLSSAAKAAGRKHGVVLMVELGDLREGIMPADLEDTVRQVL
RLPNIALRGIGANLACHSGVSPDTRNMSELSALVDSIEAVFGLTLDIVSG
GNSANLDWALGGADAGRINNLRLGESVLLGCEPLHRQPIDGLYTDAITLI
AEVIESKVKPSRPWGEIAQTAFGEKPLVTDRGNISQAILAIGYQDVDPSG
LQGPPGIEIIGASSDHLITDTGHCHLSVGAEIQFQLNYSALVRTMTSPFV
TKVLKAPQSER
>PBPRB1784 T4500, hypothetical carbamate kinase
MRIVLALGGNALLARGQALTAENQRKNIIQSAASIAAIAKEHEIVVVHGN
GPQVGLLMEQNSAYQEYSPETTPYPMDVLGSQTCGMVGYMLQQELRNVDD
SLAIATLVTQTEVSKSDPAFANPTKFVGPVYTAERAEEIMASSPLMFKPD
GEYYRRVVPSPMPKDIVELQQIETLLKAGNLVIACGGGGVPVSIEDRKST
GVECVIDKDLTAELLAEKLDADLFIILTDGSIYRNYGKEDQAEMKQATPA
GLSEFTFPAGSMGPKIDAVCKFVETGRGNSAIGSLFDLDKILKNEAGTLV
TQGEGIIYY
>PBPRB1803 VC2566, conserved hypothetical protein
MPKISVGLAMTLLIVGNLVAVFSDALIKTLDADTAIFQFVFFRQLTAVLI
LTPFCLSTSKKSFIDGLKWHALRAHIWLFGAIFMVIAINSMPLATANAIF
YAAPLIMLPMAMMLFSEKLTKHSVAAGMLGFAGVLVVIRPTELNWAAMAA
LVVAVTLAANNLLIRKLPTHQTVAQTLLLTNLVGMPAAFGLAIWEGQPWD
WAPLLTAAGSSAFILVYAATCVIAYRSAESNKIASAEYSGLLGAVGVGLL
WFDEVPDLAMLIGTAMIILPLVWLARIEKMNQHKQRLQTEL
>PBPRB1593 VP0623, hypothetical glycine/D-amino acid oxidase
MIGLTSAWYLAEAGHDVTVIDRQSKSAEETSFANAGQISYGYSSPWAAPG
IPVKALKWLAQKHAPLKIKPSLSPDLYVWASKMLANCNQERYQMNKARML
RVANYSRDCLIDLRKHQPINYEGRQQGTLQVFRNAAQIEAVAKDIQVLAE
SGTRYEELDVAGCIAAEPGLKNVKDKLVGGLRLPDDETGDCYQFCQQLTE
LAIKAGVKFHFNVDVQKLNQTQGKVSSVSTSMGALKADAYVMAMGSYSSS
LLSPLGLSIPVYPVKGYSLTIPVTDETQAPVSTVMDETYKVAMTRFDQRI
RVAGTAELAGYDLDLSEQRKATIAMVVQDLFPNGGDMSKAEYWTGLRPMT
PDGAPIIGKTPFSNLFTNTGHGTLGWTMACGSARLLADVISGVTPDIDPD
GLSIARYNA
>PBPRB1745 VPA1112, putative choline dehydrogenase
MNTTYDYIIVGAGSAGCVLADRLSASGEHYILLLEAGGSDRSIFIQMPTA
LSYPMNSEKYAWQFETQPEAGLDSRSLHCPRGRVLGGSSSINGMVYVRGH
ACDYDEWVEQGAEGWSYQECLPYFRRAESWIHGEDTYRGGDGPVGTCNGN
DMELNPLYQAFIDAGQQAGYPKTDDYNGYQQEGFGPMHMTVDKGIRASTS
NAYLRRAMKRSNLTVRKGVVTRKVLIKNKQAIGVEIEVGGKVQSVYANTE
VLLSAGSVGSPQLLQLSGIGPKAVLEQAGIAVKHDLPGVGENLQDHLEVY
FQYACHQPITLNSKLGLISKGLIGTRWILQKDGLGATNHFESCAFIRSRA
GLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPQSRGRIWITSAD
PHQKPNIEFNYISTEQDKQDWRDCIRLTREILAQPAMDDYRGEEIQPGAD
ITSDEAMDAWVRQNVESAYHPSCTCKMGSDNDPMTVLNKDCQVRGIDSLR
VIDSSVFPTIPNGNLNAPTIMVAEKAADAILGNTPLSPSNAPTWIAPQWE
TEQRNGAAQRPMFHQQRK
>PBPRB1865 VV21676, hypothetical transport protein
MQDHNSRFPTISKILILRQLLWGAAFYGTYVLLTKFFLNDLNYSEADTIM
MMGAFGAVGPVFSAVGGFVADKYIGAFRAVYIGYTAYLAGFVLLGVGASD
LNVPLSIFAIALIGYARGLSATCPTVLLGNSYSETNRDAFQQGLTVNYSI
NNLGSFSAKYLFPFLIAYLAYQGVFFIAGLLMACILVIFFKYRKELESVG
NDLDKTSLPFMTWALFFVGSIATLGLVFWIFSNLDMGKYILYSLGFGAIG
YFIYEITKATRAYQFKMVAVLITVCILIVFYFFYGQMFTSMNMYAINLMG
DKLLGFIPIYPESNMAFNPLWCFVLGGPMIQVYAWLDRKGYSPTIPTKIA
GAFVLSAIAFTLLGLSSENMGPDGKISADWILLVHFFQSGAELIVGALGA
GFIFEMVPRYLAAFSIGLRAVAISLSGILAAVIATKIALPKDIVFTPEVV
EAVYTGYFYMLAQIAAFMSVLTFALSRVIQKLILRGEALEAEEKEAALSH
>PBPRB1723 VVA1382, putative transporter
MLFKKMASNSTSDYFRGGGKMLWWMVGATAFMTQFSAWTFTGAAGKAFND
GFAVLAVFAGNMIAYVFAIYYFARRFRQMRVDTPTEGVRRRFGSVNEQFF
TWVIIPLSVINAGVWLNGLGVFASAVFDADINTTIYVTGAAVLVISLISG
AWGVVASDFIQTLVVAVISIACAGVALYFVGGPSEIINEFPGGFFMGPDM
NYPLLLVCTFLFFIVKQLQSINNMQESYRFLNAKDSNNATKAAAMALAMM
VFGAIIWFIPPWASAIMYPDAASAYPELGAKASDAVYLVFARETMPLGTV
GLLMAGLFAATMSSMDSALNRNSGIFVRSFYSTIVRKGKAEDKELLRAGQ
IACLVNGILVIGMAQFFNSLSHLSLFDLMMQVATLLQSPVLVPLFLGIII
RKTPKWAPWATVVFGLTVSWAVVNIFTPQYVMSWFGIENLTGREIGELRT
VITIAAHLIFTAGFFCLTTLFYNEEKDPYVETTKEFFEDVDTECVSEEGQ
DIVDRMQRAKLGTLVIYMSAGLTLMVLIPNPLWGRLLFLGCAAAIFAVGY
GLKRSARLNDSEQAAATSVN
>PBPRB1863 YPO3268, hypothetical multidrug transport protein
MNDLAPVKGVRLLLITLATSMATFMMVLDTSIANVAIPTIAGNLGISTDQ
GIWVITAFGAANAISMPMTGFLSRRFGEVRLFTFAVVGFIVTSILCGMSN
SIEMLIFFRVLQGAVSGSIAPLSQSILLRNFPKEKHGMAMALWSMTVVVA
PIMGPILGGVLTDNCSWSWIFFINVPIGIIASILVYVLLKDRDTKTQREN
VDYIGIGLLVIAAGSLQMMLDLGKNNDWFQSNLIVALTFLAILSWGIMII
WEWYHDNPIVNFRFFKQRNFLVAVVVMCLGFMMYFGSTVLLPLWLQGVMG
YTASWSGYAVAPIGILAIVSAPIIGKLVQKVDLRIILSYAFVMFSIVGFW
RANYSLDAPYSYIMMPQFVLGAATLAFFVPLQNLVVTSVSSDQIANAVAL
STFFRTLFGSFSSSIVTTMWDERMEFHHARLAEGFTNANQSAMEFIHQMG
DNLTAVNGELTRQAYMMSTTDIFWMTGILCLCLIPIVWLAKPINTKRLSA
QKSTTNAAVNID