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2024-06-26 01:39:28

Gene list

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COG category: Amino acid transport and metabolism
Gene type: CDS
Genomic element: chromosome 2

Number of genes found: 144

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
VPA0003 peptide ABC transporter, ATP-binding proteinSubName: Full=Peptide ABC transporter, ATP-binding protein; chromosome 2 CDS3876 933 - 0.484459
VPA0004 peptide ABC transporter, ATP-binding proteinSubName: Full=Peptide ABC transporter, ATP-binding protein; chromosome 2 CDS4805 894 - 0.477629
VPA0008 putative amino acid ABC transporter, periplasmic amino acid-binding portionSubName: Full=Putative amino acid ABC transporter, periplasmic amino acid-binding portion; chromosome 2 CDS7634 756 - 0.449735
VPA0026 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS23389 828 - 0.461353
VPA0031 sodium/glutamate symporterSubName: Full=Sodium/glutamate symporter; chromosome 2 CDS25649 1236 + 0.46521
VPA0035 sodium/glutamate symporterSubName: Full=Sodium/glutamate symporter; chromosome 2 CDS29473 1227 + 0.466178
VPA0087 putative transporterSubName: Full=Putative transporter; chromosome 2 CDS79174 1773 + 0.488438
VPA0090 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS83209 585 - 0.483761
VPA0093 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS85859 621 - 0.491143
VPA0098 putative efflux pump proteinSubName: Full=Putative efflux pump protein; chromosome 2 CDS89885 1491 + 0.488263
VPA0104 putative ring-cleaving dioxygenaseSubName: Full=Putative ring-cleaving dioxygenase; chromosome 2 CDS97769 426 - 0.476526
VPA0108 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS101779 486 - 0.44856
VPA0112 putative peptidaseSubName: Full=Putative peptidase; chromosome 2 CDS104155 1848 - 0.494048
VPA0116 permeaseSubName: Full=Permease; chromosome 2 CDS108394 1353 + 0.495196
VPA0118 putative transcriptional regulatorSubName: Full=Putative transcriptional regulator; chromosome 2 CDS110996 1458 - 0.485597
VPA0119 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS112525 900 + 0.477778
VPA0167 putative proteaseSubName: Full=Putative protease; chromosome 2 CDS160553 2166 - 0.446445
VPA0168 multidrug resistance protein DSubName: Full=Multidrug resistance protein D; chromosome 2 CDS163045 1206 - 0.501658
VPA0169 agmatinaseSubName: Full=Agmatinase; chromosome 2 CDS164662 921 - 0.479913
VPA0170 biosynthetic arginine decarboxylaseRecName: Full=Biosynthetic arginine decarboxylase; Short=ADC; EC=4.1.1.19; chromosome 2 CDS165584 1923 - 0.475299
VPA0185 putative branched chain amino acid transporterSubName: Full=Putative branched chain amino acid transporter; chromosome 2 CDS183285 1311 - 0.477498
VPA0192 tryptophanaseRecName: Full=Tryptophanase; EC=4.1.99.1; AltName: Full=L-tryptophan indole-lyase; Short=TNase; chromosome 2 CDS190816 1401 + 0.487509
VPA0234 aminotransferase, class IIISubName: Full=Aminotransferase, class III; chromosome 2 CDS238248 1380 - 0.513768
VPA0235 2-aminoethylphosphonate:pyruvateaminotransferaseRecName: Full=2-aminoethylphosphonate--pyruvate transaminase; EC=2.6.1.37; AltName: Full=2-aminoethylphosphonate aminotransferase; AltName: Full=AEP transaminase; Short=AEPT; chromosome 2 CDS239654 1104 - 0.479167
VPA0238 ABC transporter, ATP-binding proteinSubName: Full=ABC transporter, ATP-binding protein; chromosome 2 CDS242663 1119 + 0.474531
VPA0241 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS246294 909 + 0.475248
VPA0244 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS249125 1401 + 0.488936
VPA0246 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS250561 1203 + 0.472984
VPA0253 putative transport proteinSubName: Full=Putative transport protein; chromosome 2 CDS256625 1497 - 0.46159
VPA0254 L-serine dehydratase 1SubName: Full=L-serine dehydratase 1; chromosome 2 CDS258481 1371 - 0.478483
VPA0289 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS289828 612 - 0.426471
VPA0291 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS291499 372 + 0.438172
VPA0302 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS303043 390 + 0.433333
VPA0314 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS312565 909 - 0.480748
VPA0333 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS326797 1209 - 0.468983
VPA0349 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS341424 660 - 0.45
VPA0350 putative ATP-binding component of ABC transporterSubName: Full=Putative ATP-binding component of ABC transporter; chromosome 2 CDS342085 1020 - 0.453922
VPA0351 putative permease of ABC transporterSubName: Full=Putative permease of ABC transporter; chromosome 2 CDS343104 786 - 0.451654
VPA0361 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS355004 255 - 0.478431
VPA0367 spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding proteinRecName: Full=Putrescine-binding periplasmic protein; chromosome 2 CDS362693 1035 + 0.435749
VPA0371 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS366206 780 - 0.464103
VPA0374 periplasmic L-asparaginase IISubName: Full=Periplasmic L-asparaginase II; chromosome 2 CDS370709 1065 - 0.480751
VPA0378 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS374892 615 + 0.430894
VPA0384 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS378712 1059 + 0.516525
VPA0391 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS388634 429 + 0.454545
VPA0399 putative aminotransferaseSubName: Full=Putative aminotransferase; chromosome 2 CDS396178 1149 - 0.494343
VPA0403 putative membrane proteinSubName: Full=Putative membrane protein; chromosome 2 CDS400001 909 - 0.455446
VPA0468 prolyl endopeptidaseSubName: Full=Prolyl endopeptidase; chromosome 2 CDS463903 2265 + 0.453863
VPA0502 putative oxidoreductaseSubName: Full=Putative oxidoreductase; chromosome 2 CDS508712 1272 + 0.471698
VPA0505 putative histidinol phosphatase and related hydrolases of the PHP familyRecName: Full=Probable phosphatase VPA0505; EC=3.1.3.-; chromosome 2 CDS511331 747 + 0.46988
VPA0509 putative tyrosine-specific transport proteinSubName: Full=Putative tyrosine-specific transport protein; chromosome 2 CDS514462 1158 + 0.468912
VPA0520 multidrug resistance protein DSubName: Full=Multidrug resistance protein D; chromosome 2 CDS526902 1194 + 0.457286
VPA0525 putative transporter, DME familySubName: Full=Putative transporter, DME family; chromosome 2 CDS529665 891 - 0.482604
VPA0530 AzlC family proteinSubName: Full=AzlC family protein; chromosome 2 CDS534755 711 - 0.485232
VPA0532 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS536601 633 + 0.467615
VPA0556 GGDEF family proteinSubName: Full=GGDEF family protein; chromosome 2 CDS554210 1443 + 0.455994
VPA0569 putative permeaseSubName: Full=Putative permease; chromosome 2 CDS568291 903 + 0.477298
VPA0576 phenylalanine-4-hydroxylaseSubName: Full=Phenylalanine-4-hydroxylase; chromosome 2 CDS576442 795 + 0.450314
VPA0585 tryptophan synthase, beta subunitRecName: Full=Tryptophan synthase beta chain 2; EC=4.2.1.20; chromosome 2 CDS583108 1224 - 0.474673
VPA0592 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS592324 840 - 0.44881
VPA0613 putative permeaseSubName: Full=Putative permease; chromosome 2 CDS617839 879 + 0.492605
VPA0615 hydroxymethylglutaryl-CoA lyaseSubName: Full=Hydroxymethylglutaryl-CoA lyase; chromosome 2 CDS619330 903 - 0.483942
VPA0636 arginine ABC transporter, ATP-binding proteinSubName: Full=Arginine ABC transporter, ATP-binding protein; chromosome 2 CDS642512 744 + 0.452957
VPA0637 arginine ABC transporter, periplasmic arginine-binding proteinSubName: Full=Arginine ABC transporter, periplasmic arginine-binding protein; chromosome 2 CDS643344 744 + 0.446237
VPA0638 arginine ABC transporter, permease proteinSubName: Full=Arginine ABC transporter, permease protein; chromosome 2 CDS644089 690 + 0.501449
VPA0639 arginine ABC transporter, permease proteinSubName: Full=Arginine ABC transporter, permease protein; chromosome 2 CDS644775 669 + 0.481315
VPA0697 putative nonspecific acid phosphatase precursorSubName: Full=Putative nonspecific acid phosphatase; chromosome 2 CDS721095 984 - 0.465447
VPA0701 putative oxalate/formate antiporterSubName: Full=Putative oxalate/formate antiporter; chromosome 2 CDS726618 1233 - 0.479319
VPA0755 putative metalloproteinaseSubName: Full=Putative metalloproteinase; chromosome 2 CDS785300 2106 + 0.472934
VPA0757 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS787957 885 - 0.463277
VPA0765 putative glutamate synthetaseSubName: Full=Putative glutamate synthetase; chromosome 2 CDS796831 1542 + 0.496757
VPA0774 lactoylglutathione lyaseSubName: Full=Lactoylglutathione lyase; chromosome 2 CDS805505 387 - 0.459948
VPA0796 putative L-allo-threonine aldolaseSubName: Full=Putative L-allo-threonine aldolase; chromosome 2 CDS823684 1077 + 0.468895
VPA0801 glycine cleavage system P proteinRecName: Full=Glycine dehydrogenase (decarboxylating); EC=1.4.4.2; AltName: Full=Glycine cleavage system P-protein; AltName: Full=Glycine decarboxylase; AltName: Full=Glycine dehydrogenase (aminomethyl-transferring); chromosome 2 CDS828140 2865 - 0.491798
VPA0802 glycine cleavage system H proteinRecName: Full=Glycine cleavage system H protein; chromosome 2 CDS831133 381 - 0.459318
VPA0803 serine hydroxymethyltransferaseRecName: Full=Serine hydroxymethyltransferase 2; Short=SHMT 2; Short=Serine methylase 2; EC=2.1.2.1; chromosome 2 CDS831565 1296 - 0.486111
VPA0805 glycine cleavage system protein T2RecName: Full=Aminomethyltransferase; EC=2.1.2.10; chromosome 2 CDS834120 1119 + 0.484361
VPA0819 amino acid ABC transporter, permease proteinSubName: Full=Amino acid ABC transporter, permease protein; chromosome 2 CDS850324 921 - 0.438654
VPA0820 amino acid ABC transporter, periplasmic amino acid-binding proteinSubName: Full=Amino acid ABC transporter, periplasmic amino acid-binding protein; chromosome 2 CDS851326 822 - 0.467153
VPA0821 amino acid ABC transporter, permease proteinSubName: Full=Amino acid ABC transporter, permease protein; chromosome 2 CDS852157 798 - 0.457393
VPA0822 amino acid ABC transporter, ATP-binding proteinSubName: Full=Amino acid ABC transporter, ATP-binding protein; chromosome 2 CDS852954 735 - 0.465306
VPA0872 arylesteraseSubName: Full=Arylesterase; chromosome 2 CDS912953 603 - 0.462687
VPA0875 putative carboxylaseSubName: Full=Putative carboxylase; chromosome 2 CDS918501 936 - 0.450855
VPA0876 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS919433 684 - 0.425439
VPA0936 amino acid biosynthesis aminotransferaseSubName: Full=Amino acid biosynthesis aminotransferase; chromosome 2 CDS968301 1197 - 0.437761
VPA0973 putative MFS family transport proteinSubName: Full=Putative MFS family transport protein; chromosome 2 CDS1018868 1161 + 0.481481
VPA1003 putataive branched-chain amino acid transport protein AzlCSubName: Full=Putative branched-chain amino acid transport protein AzlC; chromosome 2 CDS1056552 732 + 0.502732
VPA1011 L-allo-threonine aldolaseSubName: Full=L-allo-threonine aldolase; chromosome 2 CDS1065282 1005 + 0.469652
VPA1016 multidrug resistance protein DSubName: Full=Multidrug resistance protein D; chromosome 2 CDS1069624 1134 - 0.448854
VPA1063 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1119798 954 - 0.489518
VPA1067 serine transporterSubName: Full=Serine transporter; chromosome 2 CDS1125446 1257 + 0.456643
VPA1070 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1129269 342 + 0.447368
VPA1109 putative ATP-binding component of ABC transporterSubName: Full=Putative ATP-binding component of ABC transporter; chromosome 2 CDS1169620 1185 - 0.464135
VPA1110 putative permease of ABC transporterSubName: Full=Putative permease of ABC transporter; chromosome 2 CDS1170807 843 - 0.45433
VPA1111 putative glycine betaine-binding ABC transporterSubName: Full=Putative glycine betaine-binding ABC transporter; chromosome 2 CDS1171740 939 - 0.463259
VPA1112 putative choline dehydrogenaseRecName: Full=Oxygen-dependent choline dehydrogenase; Short=CDH; Short=CHD; EC=1.1.99.1; AltName: Full=Betaine aldehyde dehydrogenase; chromosome 2 CDS1172727 1746 - 0.488545
VPA1129 putative hydroxymethylglutaryl-CoA lyaseSubName: Full=Putative hydroxymethylglutaryl-CoA lyase; chromosome 2 CDS1193730 930 + 0.501075
VPA1136 putative transcriptional regulator; also putative ATP-binding component of a transport systemSubName: Full=Putative transcriptional regulator also putative ATP-binding component of a transport system; chromosome 2 CDS1200544 1416 - 0.469633
VPA1148 putative high-affinity branched-chain amino acid transport ATP-binding proteinSubName: Full=Putative high-affinity branched-chain amino acid transport ATP-binding protein; chromosome 2 CDS1211400 822 - 0.476886
VPA1149 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1212290 1245 - 0.485944
VPA1150 putative high-affinity branched-chain amino acid transport permease proteinSubName: Full=Putative high-affinity branched-chain amino acid transport permease protein; chromosome 2 CDS1213580 1068 - 0.480337
VPA1151 putative ABC transporter, membrane spanning proteinSubName: Full=Putative ABC transporter, membrane spanning protein; chromosome 2 CDS1214659 894 - 0.480984
VPA1153 putative high-affinity branched-chain amino acid transport ATP-binding proteinSubName: Full=Putative high-affinity branched-chain amino acid transport ATP-binding protein; chromosome 2 CDS1217504 819 - 0.479853
VPA1184 putative drug transport transmembrane proteinSubName: Full=Putative drug transport transmembrane protein; chromosome 2 CDS1253136 1179 - 0.469042
VPA1185 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase, DAHP synthetaseRecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase; EC=2.5.1.54; AltName: Full=3-deoxy-D-arabino-heptulosonate 7-phosphate synthase; AltName: Full=DAHP synthase; AltName: Full=Phospho-2-keto-3-deoxyheptonate aldolase; chromosome 2 CDS1254463 1053 - 0.461538
VPA1193 peptidase TRecName: Full=Peptidase T; EC=3.4.11.4; AltName: Full=Aminotripeptidase; Short=Tripeptidase; AltName: Full=Tripeptide aminopeptidase; chromosome 2 CDS1265428 1230 - 0.465041
VPA1206 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1280656 621 + 0.483092
VPA1215 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1288149 942 + 0.476645
VPA1217 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1289874 1038 - 0.463391
VPA1232 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1306585 615 - 0.460163
VPA1236 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1308895 1263 + 0.470309
VPA1237 putative GntR-family regulatory proteinSubName: Full=Putative GntR-family regulatory protein; chromosome 2 CDS1310160 1437 - 0.475296
VPA1267 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1347400 438 - 0.481735
VPA1283 putative MFS transporterSubName: Full=Putative MFS transporter; chromosome 2 CDS1361618 1215 + 0.463374
VPA1314 thermostable direct hemolysin ARecName: Full=Thermostable direct hemolysin 2; AltName: Full=Kanagawa phenomenon-associated hemolysin; Flags: Precursor; chromosome 2 CDS1391960 570 + 0.35614
VPA1327 putative exoenzyme TSubName: Full=Putative exoenzyme T; chromosome 2 CDS1402532 711 - 0.416315
VPA1378 thermostable direct hemolysin SRecName: Full=Thermostable direct hemolysin 1; AltName: Full=Kanagawa phenomenon-associated hemolysin; Flags: Precursor; chromosome 2 CDS1450828 570 + 0.354386
VPA1385 putative integral membrane proteinSubName: Full=Putative integral membrane protein; chromosome 2 CDS1456060 333 - 0.444444
VPA1413 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1486671 402 + 0.440298
VPA1467 protease IISubName: Full=Protease II; chromosome 2 CDS1565180 2001 - 0.476762
VPA1484 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1584962 1182 - 0.468697
VPA1496 prolyl endopeptidaseSubName: Full=Prolyl endopeptidase; chromosome 2 CDS1598040 2034 - 0.474435
VPA1509 threonine 3-dehydrogenaseRecName: Full=L-threonine 3-dehydrogenase; EC=1.1.1.103; chromosome 2 CDS1612798 1032 - 0.471899
VPA1512 ScrB (extracellular solute binging protein)SubName: Full=ScrB (Extracellular solute binging protein); chromosome 2 CDS1617722 966 - 0.444099
VPA1513 ScrA (aminotransferase)SubName: Full=ScrA (Aminotransferase); chromosome 2 CDS1618718 1407 - 0.459844
VPA1523 glyoxylase I family proteinSubName: Full=Glyoxylase I family protein; chromosome 2 CDS1626613 384 + 0.460938
VPA1527 conserved hypothetical proteinRecName: Full=Probable phosphatase VPA1527; EC=3.1.3.-; chromosome 2 CDS1629699 756 - 0.462963
VPA1529 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1631144 927 - 0.459547
VPA1574 putative membrane transport proteinRecName: Full=Multidrug resistance protein MdtL; chromosome 2 CDS1670691 1191 + 0.47691
VPA1576 putative transmembrane proteinSubName: Full=Putative transmembrane protein; chromosome 2 CDS1672966 870 + 0.482759
VPA1605 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1704585 390 - 0.423077
VPA1611 putative carboxypeptidase G2SubName: Full=Putative carboxypeptidase G2; chromosome 2 CDS1710175 1125 - 0.487111
VPA1630 sodium/dicarboxylate symporterRecName: Full=Serine/threonine transporter SstT; AltName: Full=Na(+)/serine-threonine symporter; chromosome 2 CDS1733349 1218 + 0.485222
VPA1634 putrescine transport proteinSubName: Full=Putrescine transport protein; chromosome 2 CDS1736640 1311 - 0.480549
VPA1635 ornithine decarboxylase, inducibleSubName: Full=Ornithine decarboxylase, inducible; chromosome 2 CDS1738012 2181 - 0.458505
VPA1647 hypothetical multidrug resistance protein DSubName: Full=Hypothetical multidrug resistance protein D; chromosome 2 CDS1757631 1209 + 0.501241
VPA1660 putative transport proteinSubName: Full=Putative transport protein; chromosome 2 CDS1779042 1206 + 0.503317
VPA1662 putative diaminopimelate decarboxylase proteinSubName: Full=Putative diaminopimelate decarboxylase protein; chromosome 2 CDS1782041 1203 + 0.503741
VPA1685 putative lactoylglutathione lyaseSubName: Full=Putative lactoylglutathione lyase; chromosome 2 CDS1806249 420 + 0.466667
VPA1691 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1809953 696 + 0.45546
VPA1724 sodium/proline symporterSubName: Full=Sodium/proline symporter; chromosome 2 CDS1840181 1494 - 0.485274
VPA1739 oligopeptide ABC transporter, periplasmic oligopeptide-binding proteinSubName: Full=Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; chromosome 2 CDS1860970 1626 - 0.482165
VPA1740 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1862737 711 + 0.486639
VPA1746 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome 2 CDS1868240 666 - 0.447447