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Gene list

Applied filters:

COG category: Unclassified
Gene type: CDS
Genomic element: pDTG1

Number of genes found: 40

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# Pseudomonas putida, NCIB 9816-4

>gid:1156376    unknown
MTIIRFHENPAEYAPTISFNHCGRMPWSARYDSEFSGFELIELFQFCEEE
GHRQGINDANQNRIGSREQAPFHRDFMGGYPKSLWENAYWIGVQAHGDTT
PAAIELEIQKVLSAPDTSRWLCDALNSALDRDSTDATNDAEYLCDLLTRR
TNALSLASEANWGEE
>gid:1156407    unknown
MVYLQITLMIERTNRAAACIYQQYKETFLEKIQGAKSKTQLVRDEEV
>gid:1156438    unknown
MKIAVVNFSGNTGKTTLSDSLLSPRMGGVRFAVETINAGASDDAAEIELL
KGRRFGELSEILMTEDNAVVDVGASNVEDFFKYMGQFAGSHEEFDFFLVP
TVSEKKQQADTINTIKTLATLGVPRSRILVVFNKVEIDDADDLPHTFAAL
MGFHELEKKFMLKRDAVIYSNEVFERLRALKTSIAAVVQDTTDYREQLRA
AQDDAAKEQAKRMISVQRLAKSAWQNLDQVYATLFGKGK
>gid:1156433    unknown
MPKVFFVPGQTTIIDYAREIGPNMWAARCSWLMLPEIRVRHPGAVLDDQT
AFLQAQESANGTKPARITEARFDFAVSHGQVLDYFADDTGDSFILQAPEV
GDLVRVYARCFGHCWSFLCLSIITHSEIRSRICTAVATNH
>gid:1156443    unknown
MADWKNIGQARWYDCKLGTMRDEDLAQLVGTTKNVIRYRRQLFDIEAWNV
RMAIEPYRHLLGIESTRTVARLCGVSAYSVDQYRKSLGVKAKPGPPPLPK
PKRFPVNHPLRRYKPLLGIVHDQDVADLAGVSRTTVRNWREALGRAPADP
LPKQPTTAQLKNYVGPWLGYESLSGVSISRAIEFRNKVIAEQS
>gid:1156437    unknown
MREKPQSLITSGGAGVIRRKAYPVSYDTGYTPKKGGVPPRSTEQPELLAY
NHEKCADNHTGADEHCAKSYGAALRLRRDQIGRTPVNLVTNPCDRFASGK
DQGIALLFHHGFEVHLRLEQSLTRAIAHRLGDLRRQLAVYLFQATDERVE
IFHHLPDHRFTRCRSVLGHRLLPLSKQRGVHLIEVLPGRLCQALHRDHPF
GLFLCGIVLRGSQLLAVIRGVLHHSGDAGFQSPEAFEHFVRVNHRITLEH
EFLLQLVETHQRCEGVRQVVRVVDLDLVEDHQNPAARNAQRGQRLDRVDG
VRLLFFLGYRGHQEEIEFFVRACKLAHVLEKILDVGCSNVDHGVVFRHEN
FRQLTEPATLEQLDLGGIIRCAGIDRFYRETYAAHAWRQQRIGQGCLAGV
TAEIDYCDFHFGVLFRRPAFSYMARSEAF
>gid:1156378    unknown
MVVSDEWIPVESSYEAVIEARLREESRRFVKPLRFDSSEDQVFPDFWLMD
ASAGTEYPMEVYGRADPKYLARKEVKADYYRTHYGTRWWAWDASTDPKGE
AIPAFPPARN
>gid:1156377    unknown
MSDQRYTVCIAHGPSIKTYSEQFQTQASYAPQWKAVLKKAHKQATVSCQC
PGTGCRLLAVRHMSDSDSFHLSRYPRTGAEHALDCVYYSPDPDKSGLGSY
SKGVVEETSEGDLKIKLTLSLRKKEPADTGQAPEATGSSSGSGKATKPAL
TLLGLLHLLWNEAGLNTWSRGMAGKRGLGLVHSRLQDAADRMLASRMRIG
DALVIAAGSKGFQSEANERKVKSAIKNNRRLLVIAPLAGHTEDREKTAAR
YLTITGFNGVPRMFLDD
>gid:1156445    unknown
MDKDENPMDKDRTQQGERGAYQLTGGKRPGENVAEHVNASPRNAEDWATD
HKRSSEPSFELFQKYGPAIQPDIGRAYEGPIVHRDSQSFYQASRVNGYDV
LIEHKRTSLNSVQANVFTSDRSVSIRYVSESVGIAKPAMELDGQRSPEHL
PKGAAGIGRV
>gid:1156383    unknown
MVSDGSLYSLFDVFQMECRFVNGWSANRDDDFLFYLLGKVADSKNDHETA
KEVGEWVADALLHGATLDAALETGRSADGYNQAIGKLAHRIADAMRFLAD
DKKATDLRGRPITTMGDTMRLGRKFNATAMVVEQKLPF
>gid:1156432    putative F plasmid gene 32-like protein
MRLSSSFRNPCMVRSNTPLTNDEIARVAPSIFAVEAHDSRSDRYRYIPTV
DVLTALRAEGFEPFMACQTRVRNSDKIQHTKHMIRLRHASNIMDKEANEI
ILLNSHDGTSSYQMMGGCFRFVCANGLVLGEAAMDQKVRHSGRQDVIGEV
IEGAYEVLDQFALIEDQRETMKQIQIRPELQHAFAEAALAYRYDPAEGPA
PVTASQLLMPRRREDRTDDLWTTFNRVQENSIKGGLTGRNKQGRRTSTRA
VTGIDQDVKLNRALWVLAQHIREAA
>gid:1156460    unknown
MGSRSKTCRTPVSPLYLVNGCPGEMMQSLDKRELAVFAVAQPDYRVVLEE
RIDSDGRKWALIIESPSTGQVYNVVTALGKTRLFKNADTAIDFIKETCPN
NPFRVITVTYGGSPS
>gid:1156435    unknown
MSCGSKGAALGRRRLLFRCRSSRTKNRPASEAQQRPERAEQLSTGWTCCL
PGRWATAGRFPEPCKDLERELLQRPAARPEGFKSDREVGQGKTLCRYKAS
GARRPKAGGVRMEARRAKTWRAFGQGLVHDSRPPKGARTGKLGGRSRLDS
CLQRGQSPPTVWHRLNNHHLRQ
>gid:1156444    putative nuclease
MAKEDVTQTTYTINQEGKERQVFTDAKAAGEAWFKADLSNKPMILVQEPG
DRAKMYAGTGVHEGKPYKDLPFDNAPGAADFKASFKGALELSKKEHAGAA
AGKPAEPELANSKPKDMPAYERAVAGKTYEGKVVGFKENQVIQQIVNGDR
VTHIAHDRSALSSAKSGLVHPGKDLSIRYPFAGVGIVKDRQLQHEQKVPS
HQPKGLGGMGRD
>gid:1156372    unknown
MKRILLGVLVIGCVLGALSALTVAFIGHKQDPAQYKAFDFRTFDQPVIDD
APGCEIRSPKGELMNRIFKGSQPNQLNLEKGTTFTIDCFPIKESEKSTTR
N
>gid:1156447    unknown
MRKKFLALLATLAFAGVAQAGAQPPTDFSYGQNSDEDACGATLCLLGMSR
DGDCDKYLKRYFSIVKFKHGNFSPSRTAAARGDFVAQCVDDQAGAKQAND
KWGGSRYGF
>gid:1156455    unknown
MKTLWLILKILTVPAWGPLWLFYRFGKFMLLLVIVSAASGCVTNTGKIEK
SPCACEFKPFVIQAKEARNV
>gid:1156396    unknown
MFLQQPAEVGDGGLVRNALQAQPGKLAQDGRLVQRFLHRRVAVAEPLMHQ
MNPQHCRQWIGWRATLTLGVMRIDQGNQTLPRHHPIHLDQEQLFAGLFAL
TGILGVEEGHLLHWKTRRVKSGHFAKIRKSSSEFP
>gid:1156434    putative regulatory protein
MQSIYTAEDWKRISPVFASRRLAVSTVEIAKAILVDGQRPQDVANARDMS
KQTVHAAVKRVRAILDEHGASELVPVMVWLPPELAAQVMEMAKPYMDAKP
ATKKGGKDA
>gid:1156430    putative regulatory protein
MNTHTQFQTTAPIFHNWLTTDDFLAFAKGISKPMTSNIDDMKAKFDAIFS
DACKRGSTYETVVHNFFCAGVEAEFGTDETAPEFAEVFVYAREYGYMNAS
ENAAREQEDAENGYCQHGLDEQTCPCGCFEGDAY
>gid:1156454    unknown
MSKFFTVTNTVCVIVAGFVVGTIIYVNTTTFQFGSEAPAASNGDAPVRIE
ASSGNPLLKATKADVARWFPGTCFAEIYMKSPSYKGGLVAGCIDKTSKEI
KAETGVALGADDFRSSEVITHFKSVYGASNPWRT
>gid:1156436    putative zinc metalloprotease
MSATPSQQLYEEIEGAYDWFNEKLFGGQLPGCIFTLQRKANTFGYFSPSR
FLRRNGAGKSDEIALNCAYFAHRRIDQTLSTLAHEQVHQWQDHFGTRSRS
GYHNREWANKMKSIGLMPSDTGEPGGKQCGQQMTHYIIDGGPFAVACQEL
IEQGGMLSWIDVVTQRVAMSATQLYGPDGKPVEQPVADPTIDILALTSAG
LLTPATNPEDPKNKRKYTCPSCHLNLWGKPGLSGRVQCVDCNVPFVDSKE
LVEVPADPSPS
>gid:1156381    unknown
MKNHDSNEHAQNEPISGEIYHVTPTHNLDSIFRDGLRPQIGPRSALLGEA
KEMVYFFGSMLAVEDALSNWLGEALDDEPGAISVLAVDRSGLHLVSDGGY
ELACPHLIRPENISLAFQDDVPADEKSGPETGGTS
>gid:1156404    unknown
MGLHLALCKGPVDAVQEIQMGDRTAWGDADRAPLTSLSINKPTLFGGDER
ESGVVGTIDVLSGHAGQGRNDNLMSRLGSSIPAFRGVLSLVTSKFAANNP
NIKPWAVRVRRFTAGWLDAPWMEWNTEVRTWDEDEGREISVGMNPAHILV
QCLTDPHWAWAIRRAPSVGVSGTRRGLCRARASASI
>gid:1156379    unknown
MSEVLVSTVHPTLGALYWVYTSNAGCNYPDHYTITDWSEVATRFPHYWRE
HEHLRWVHGKHIGQVFNSDDPYGSYAEVEDEETFETSYGKLSGMLADLHA
KSGQSVDEFVQWMKKADWVDVPAPAKEFLDD
>gid:1156425    unknown
MQTPQDDTVMDFGPNLFGGEGGSASIPSADDADATNEALEGAASVSHQMT
EGCIEEKTAEAGSVQAGGNSAPSSSDVAPGVNTQQAPLKPRQGSPKYMLL
QPYC
>gid:1156375    unknown
MADTRDEITKAKGITADLVMEIGTYYSAKDMRGVQTGLSSAARELRAFTQ
NNSLRGRLGAKLSLEQHELLNNAAALLDSIKYNVEHAKERKDRTEKATAK
KRQLWEREAEQLVKTHFTLPMNTVTEQLRVLELSLIAQEVLGQSIYIKDH
LQLRKLMQDEPPKWGNHSVAQWRRSEVSSLLADMQYALRSYLSWDLNMTP
GERLKELERSLDAARAEILARPMCVETLRIWNDELKSAAFMTSAMPTTDG
SRH
>gid:1156458  mpfB  putative mating pair formation protein
MAEQDPDEGEVLVVAMARPSMVGPFTLSSILISLITPVLAALLLRSLYVL
VTMPILFAAAYWICSKDVYLFGVLRAAFKLRASRLRKLWGYRSYAPR
>gid:1156456  mpfD  putative mating pair formation protein
MMKTIKKLSLAIAVSMAITGQAGATGVPTGDAGTWAGLAQNLAELREQYK
VLKQQYETQTDIMNNMRGSYGRGAIGLSDSINSASVVPGSWQEVVSRQNS
GAYGSKQSYYEELVNTLPQELFANPDSNRARGYQLSSNSVVAAMSAGEAL
YSEVQVHLNNLTTLSMQVDNTTNAKDAADLQNRIATENGMLTSAQSKLQA
LNMNLQTNLANQENQATSQNEQFFRWKKD
>gid:1156453  mpfE  putative mating pair formation protein
MADLTLKGLIGATDEVTTSFVAEVFPNLAGLVEPLVWTIAVAYWAVLGIQ
TYNGKISVAPWDIVKRAMLTFMVFLTLNWSTGGSALYQIWGTWTETIAAQ
IMSRGVDSTSMLDALYVNVGQVASTLMNVSWRQFGMIIMGSGLFMVNCIL
FIAAILNMLIAKFGAAIIMCILPILLGFIFFEQTRQWTMSWFSKMLNLSL
IYILSIAIVRFGYAIFGQAIDEIANTATISDAALITAQQWGTLIIVEGVL
IICLLQVRGWAAAIATSATVGGSSLAMMALRTVGLGK
>gid:1156448  mpfJ  putative mating pair formation protein
MQKLPKFALAILASACLVGHVAAEETQQQRFSDLAAKCAPNVHASTLKAL
IGNESSFNPYAIGVVGTRLERQPKSLSEAIATAEKLERDGHRYAMGLGQL
LMTNMRARGLSYQDVFEPCRNLQAISKLFTEYYTQALKTSATEQEALLKA
TSMYYSGNERLGFDADSPGGMSYVERVVDRASKPTADDPIVPAFDVQEAT
QAIPVIASTKSPSKARKRAQGASEQPAGPWLTFTDGNGQAIAQAQPQAQQ
KSQIQVQLDTGDAPDEKRKFTAFDAPTANAEPAAVPVQQEQTAPSFVQII
N
>gid:1156388  nahAd  naphthalene 1,2-dioxygenase iron sulfur protein component small subunit
MMINIQEDKLVSAHDAEEILRFFNCHDSALQQEATTLLTQEAHLLDIQAY
RAWLEHCVGSEVQYQVISRELRAASERRYKLNEAMNVYNENFQQLKVRVE
HQLDPQNWGNSPKLRFTRFITNVQAAMDVNDKELLHIRSNVILHRARRGN
QVDVFYAAREDKWKRGEGGVRKLVQRFVDYPERILQTHNLMVFL
>gid:1156391  nahC  1,2-dihydroxynaphthalene dioxygenase
MSKQAAVIELGYMGISVKDPDAWKSFATDMLGLQVLDEGEKDRFYLRMDY
WHHRIVVHHNGQDDLEYLGWRVAGKPEFEALGQKLIDAGYKIRICDKVEA
QERMVLGLMKTEDPGGNPTEIFWGPRIDMSNPFHPGRPLHGKFVTGDQGL
GHCIVRQTDVAEAHKFYSLLGFRGDVEYRIPLPNGMTAELSFMHCNARDH
SIAFGAMPAAKRLNHLMLEYTHMEDLGYTHQQFVKNEIDIALQLGIHAND
KALTFYGATPSGWLIEPGWRGATAIDEAEYYVGDIFGHGVEATGYGLDVK
LS
>gid:1156394  nahD  2-hydroxychromene-2-carboxylate isomerase
MIVDFYFDFLSPFSYLANHRLSKLAQDYGFSIRYYAIDLARVKIAIGNVG
PSNRDLIVKLDYLKVDLQRWAELYEIPLVFPANYNSRRMNTGLYYSGAMA
QTGAYVNVVFNAVWGDGIAPDLESLPALVSEKLGWDRSAFEDFISSDAAT
ERYDEQTHAAIERKVFGVPTMFLGDEMWWGNDRLFMLENAVGGAPVNGE
>gid:1156414  nahO  acetaldehyde dehydrogenase
MSKKLKAAIIGPGNIGTDLVMKMLRSEWIEPVWMVGIDPNSDGLKRARDF
GMKTTAEGVDGLLPHVLDDDIRIAFDATSAYVHAENSRKLNALGVLMVDL
TPAAIGPYCVPPVNLKQHVGRLEMNVNMVTCGGQATIPMVAAVSRVQPVA
YAEIVATVSSRSVGPGTRKNIDEFTRTTAGAIEQVGGAREGKAIIVINPA
EPPLMMRDTIHCLTDSEPDQAAITASVHAMIAEVQKYVPGYRLKNGPVFD
GNRVSIFMEVEGLGDYLPKYAGNLDIMTAAALRTGEMFAEEIAAGTIQLP
RRDIALA
>gid:1156371  parR  ParR
MSSRVADQDLRIPPDEFERIRSTSKMHARNLDVAYELLVEGKGLVAVANA
HGLTKQRALAIRDKIYSAYLMKTPEGWKCAQICAPTDMIDRFVKEADAAR
VRYWQKNSMNHRE
>gid:1156374  rep  putative replication protein
MIDDEGEVRALVQPTQRGTWVQTERAGHEAWAALIAQAPRAGQLMHIIVQ
HMDKSGALIVSQSTLAKMMDTSIATTKRAISVLSKHNWIQTISVGGQRGG
TLAYVVNSRIAWADKRENLQYARFNARVLISSEDQADLGSNKLKQLPTMS
DGEIQLPAGPGMEPPAQDSLDGVDLPDMPSIPHHDKNDL
>gid:1156395  res2  putative resolvase
MAAETLYREGRLSVSAIGEKLHISKSTLYSYLRHRGVEIGTYQKSALARG
QKRNIASPAESTVERVATVTLRLAVVNNSKFMRGRKRATENIERYCLEPY
GMKRSETGHYELTIPYRSDEALDKTLHDLLTEISQEADMRSCFIEAEAWE
EGTERRW
>gid:1156440  traA  putative TraA protein
MAKTLPIRLNDDQEARLEQAAALAGYKHLSTYVRDKALANEKSGSRQTDL
DSWADQQRMLGLLENVSQAQAQNRTLLTIAVYLLRQGLQQGKVNQLRAEL
SHLVDTDQLISTLLPELASDIERLSGEDNA
>gid:1156439  traD  putative TraD protein
MGDKDLTNALMAVGPESKAAKIRQVMPLIEQQLSAGVRRQVILDVLKQQG
IELSMETLKSYLYRYRKTQRQKPTQSNQTTNPAPSMQPVVERGEPEIEGG
VSYDTDGETKVSQAAPLGPLELSKIMNPGDDQNASDLAMYENAGRRKRTP
K