Gene list
Applied filters:
COG category: Intracellular trafficking and secretion
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 134
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Salmonella typhimurium LT2, LT2; SGSC 1412; ATCC 700720 | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
STM0307 | homology to Shigella VirG protein | chromosome | CDS | 350943 | 408 | - | 0.470588 | |
STM0912 | Fels-1 prophage protease subunits of ATP-dependent proteases | chromosome | CDS | 983263 | 2187 | + | 0.576589 | |
STM1033 | Gifsy-2 prophage Clp protease-like protein | chromosome | CDS | 1120666 | 2082 | + | 0.524976 | |
STM2605 | Gifsy-1 prophage protein | chromosome | CDS | 2752336 | 1497 | - | 0.565798 | |
STM2690 | putative outer membrane efflux protein | chromosome | CDS | 2839118 | 1410 | + | 0.568794 | |
STM2706 | Fels-2 prophage protein | chromosome | CDS | 2853995 | 1575 | - | 0.524444 | |
STM2787 | tricarboxylic transport protein | chromosome | CDS | 2935579 | 435 | + | 0.57931 | |
STM3691 | putative inner membrane protein | chromosome | CDS | 3881228 | 4386 | + | 0.527816 | |
STM4258 | putative methyl-accepting chemotaxis protein | chromosome | CDS | 4478486 | 1389 | + | 0.367891 | |
STM4259 | putative ABC exporter outer membrane component-like protein | chromosome | CDS | 4479864 | 1320 | + | 0.367424 | |
STM4575 | putative outer membrane protein | chromosome | CDS | 4830411 | 690 | - | 0.466667 | |
STM4595 | putative fimbrial chaparone protein | chromosome | CDS | 4852849 | 546 | - | 0.501832 | |
bcfA | fimbrial subunit | chromosome | CDS | 24469 | 543 | + | 0.517495 | |
bcfB | fimbrial chaparone | chromosome | CDS | 25112 | 687 | + | 0.509461 | |
bcfC | fimbrial usher | chromosome | CDS | 25803 | 2622 | + | 0.544622 | |
bcfD | fimbrial subunit | chromosome | CDS | 28425 | 1008 | + | 0.500992 | |
bcfE | fimbrial subunit | chromosome | CDS | 29433 | 546 | + | 0.494505 | |
bcfF | fimbrial subunit | chromosome | CDS | 29994 | 519 | + | 0.55684 | |
bcfG | fimbrial chaparone | chromosome | CDS | 30478 | 732 | + | 0.539617 | |
bigA | putative surface-exposed virulence protein | chromosome | CDS | 3629167 | 5862 | + | 0.573524 | |
ccmD | heme exporter protein C | chromosome | CDS | 2351391 | 213 | - | 0.694836 | |
ccmD | heme exporter protein C | chromosome | CDS | 4016319 | 213 | - | 0.694836 | |
clpP | proteolytic subunit of clpA-clpP ATP-dependent serine protease | chromosome | CDS | 503210 | 624 | + | 0.512821 | |
cpxP | periplasmic repressor of cpx regulon by interaction with CpxA | chromosome | CDS | 4270595 | 501 | + | 0.506986 | |
exbB | uptake of enterochelin | chromosome | CDS | 3320009 | 735 | - | 0.556463 | |
exbD | uptake of enterochelin | chromosome | CDS | 3319577 | 426 | - | 0.507042 | |
ffh | 4.5S-RNP protein | chromosome | CDS | 2817202 | 1362 | - | 0.549927 | |
fimC | periplasmic chaperone, required for type 1 fimbriae | chromosome | CDS | 605325 | 693 | + | 0.503608 | |
fimD | outer membrane usher protein | chromosome | CDS | 606048 | 2613 | + | 0.556831 | |
fimF | putative fimbrial protein | chromosome | CDS | 609692 | 519 | + | 0.55106 | |
fimH | minor fimbrial subunit | chromosome | CDS | 608675 | 1008 | + | 0.516865 | |
fimI | fimbrial protein internal segment | chromosome | CDS | 604748 | 534 | + | 0.541198 | |
flgM | anti-FliA factor | chromosome | CDS | 1257046 | 294 | - | 0.517007 | |
flgN | flagellar biosynthesis protein | chromosome | CDS | 1256619 | 423 | - | 0.536643 | |
flhA | flagellar biosynthesis protein | chromosome | CDS | 2008212 | 2079 | - | 0.559885 | |
flhB | putative part of export apparatus for flagellar proteins | chromosome | CDS | 2010283 | 1152 | - | 0.559028 | |
fliE | putative flagellar hook-basal body protein | chromosome | CDS | 2056008 | 315 | - | 0.568254 | |
fliF | basal-body MS (membrane and supramembrane)-ring and collar protein | chromosome | CDS | 2056539 | 1683 | + | 0.571598 | |
fliH | flagellar biosynthesis protein | chromosome | CDS | 2059202 | 708 | + | 0.60452 | |
fliI | flagellum-specific ATP synthase | chromosome | CDS | 2059909 | 1371 | + | 0.60248 | |
fliJ | flagellar FliJ protein | chromosome | CDS | 2061301 | 444 | + | 0.513514 | |
fliN | flagellar biosynthesis protein | chromosome | CDS | 2064536 | 414 | + | 0.548309 | |
fliP | flagellar biosynthesis protein | chromosome | CDS | 2065326 | 738 | + | 0.536585 | |
fliQ | flagellar biosynthesis protein | chromosome | CDS | 2066073 | 270 | + | 0.518519 | |
fliR | putative flagellar biosynthetic protein | chromosome | CDS | 2066351 | 795 | + | 0.515723 | |
fliS | repressor of class 3a and 3b operons (RflA activity) | chromosome | CDS | 2050820 | 408 | + | 0.5 | |
ftsY | GTPase domain of cell division membrane protein | chromosome | CDS | 3738746 | 1476 | - | 0.550135 | |
hofB | putative integral membrane protein | chromosome | CDS | 166319 | 1386 | - | 0.554834 | |
hofC | putative component in type IV pilin biogenesis | chromosome | CDS | 165127 | 1203 | - | 0.544472 | |
hofQ | putative transport protein | chromosome | CDS | 3643213 | 1239 | - | 0.563358 | |
hopD | leader peptidase HopD | chromosome | CDS | 3596910 | 468 | + | 0.529915 | |
invA | invasion protein | chromosome | CDS | 3038400 | 2058 | - | 0.455782 | |
invC | surface presentation of antigens | chromosome | CDS | 3036677 | 1296 | - | 0.542438 | |
invG | outer membrane invasion protein | chromosome | CDS | 3041597 | 1689 | - | 0.46418 | |
lepB | leader peptidase (signal peptidase I), serine protease | chromosome | CDS | 2725781 | 975 | - | 0.531282 | |
lpfA | long polar fimbria | chromosome | CDS | 3827449 | 537 | - | 0.463687 | |
lpfB | long polar fimbrial chaperone | chromosome | CDS | 3826666 | 699 | - | 0.447783 | |
lpfC | long polar fimbrial outer membrane usher protein | chromosome | CDS | 3824115 | 2529 | - | 0.553578 | |
lpfE | long polar fimbrial minor protein | chromosome | CDS | 3822485 | 528 | - | 0.511364 | |
lspA | prolipoprotein signal peptidase (SPase II) | chromosome | CDS | 56689 | 501 | + | 0.528942 | |
marC | putative MarC Transporter | chromosome | CDS | 1598190 | 666 | + | 0.534535 | |
misL | putative autotransported protein | chromosome | CDS | 3954761 | 2868 | + | 0.530683 | |
orgA | putative flagellar biosynthesis/type III secretory pathway protein | chromosome | CDS | 3013788 | 681 | - | 0.450808 | |
ppdB | prepilin peptidase dependent protein B | chromosome | CDS | 3156808 | 564 | - | 0.542553 | |
ppdD | prelipin peptidase dependent protein | chromosome | CDS | 167714 | 438 | - | 0.53653 | |
prgK | cell invasion protein | chromosome | CDS | 3014996 | 759 | - | 0.457181 | |
safB | putative fimbriae assembly chaparone | chromosome | CDS | 342829 | 714 | + | 0.488796 | |
safC | putative fimbriae usher | chromosome | CDS | 343566 | 2511 | + | 0.546794 | |
secA | preprotein translocase; secretion protein of IISP family | chromosome | CDS | 158689 | 2706 | + | 0.538803 | |
secB | molecular chaperone in protein export | chromosome | CDS | 3896036 | 468 | - | 0.510684 | |
secD | preprotein translocase, IISP family, part of the channel | chromosome | CDS | 462331 | 1848 | + | 0.544913 | |
secE | preprotein translocase IISP family, membrane subunit | chromosome | CDS | 4362017 | 384 | + | 0.554688 | |
secF | preprotein translocase, IISP family, membrane subunit | chromosome | CDS | 464189 | 972 | + | 0.542181 | |
secG | preprotein translocase IISP family protein | chromosome | CDS | 3461852 | 333 | - | 0.513514 | |
secY | preprotein translocase of IISP family | chromosome | CDS | 3586027 | 1332 | - | 0.496997 | |
shdA | similar to the C-terminal region of AIDA | chromosome | CDS | 2627589 | 6120 | - | 0.580719 | |
sipC | cell invasion protein | chromosome | CDS | 3027857 | 1230 | - | 0.477236 | |
smf | putative protein involved in DNA uptake | chromosome | CDS | 3575680 | 1125 | - | 0.541333 | |
sohB | putative peptidase | chromosome | CDS | 1813085 | 1047 | - | 0.540592 | |
spaO | surface presentation of antigens | chromosome | CDS | 3034335 | 912 | - | 0.527412 | |
spaP | surface presentation of antigens | chromosome | CDS | 3033671 | 675 | - | 0.414815 | |
spaQ | surface presentation of antigens | chromosome | CDS | 3033385 | 261 | - | 0.467433 | |
spaR | surface presentation of antigens | chromosome | CDS | 3032590 | 792 | - | 0.493687 | |
spaS | surface presentation of antigens | chromosome | CDS | 3031533 | 1071 | - | 0.43324 | |
sppA | protease IV | chromosome | CDS | 1372910 | 1857 | - | 0.557889 | |
spy | periplasmic protein related to spheroblast formation | chromosome | CDS | 1388557 | 486 | + | 0.5 | |
ssaC | secretion system apparatus protein | chromosome | CDS | 1480402 | 1494 | + | 0.423025 | |
ssaJ | secretion system apparatus protein | chromosome | CDS | 1490277 | 750 | + | 0.42 | |
ssaN | secretion system apparatus protein | chromosome | CDS | 1495691 | 1302 | + | 0.512289 | |
ssaQ | secretion system apparatus protein | chromosome | CDS | 1497708 | 969 | + | 0.46646 | |
ssaR | secretion system apparatus protein | chromosome | CDS | 1498744 | 648 | + | 0.429012 | |
ssaS | secretion system apparatus | chromosome | CDS | 1499388 | 267 | + | 0.419476 | |
ssaT | secretion system apparatus protein | chromosome | CDS | 1499655 | 780 | + | 0.389744 | |
ssaU | secretion system apparatus protein | chromosome | CDS | 1500431 | 1059 | + | 0.396601 | |
ssaV | secretion system apparatus protein | chromosome | CDS | 1493656 | 2046 | + | 0.465298 | |
sseA | secretion system effector | chromosome | CDS | 1483601 | 327 | + | 0.406728 | |
stbA | putative fimbriae; major subunit | chromosome | CDS | 384403 | 537 | - | 0.471136 | |
stbB | putative fimbriae; chaparone | chromosome | CDS | 383580 | 762 | - | 0.454068 | |
stbC | putative fimbriae; usher | chromosome | CDS | 381035 | 2562 | - | 0.539422 | |
stbE | putative fimbriae; chaparone | chromosome | CDS | 378981 | 759 | - | 0.476943 | |
stcB | putative periplasmic chaperone protein | chromosome | CDS | 2246358 | 684 | - | 0.402047 | |
stcC | putative outer membrane protein | chromosome | CDS | 2243855 | 2490 | - | 0.457831 | |
stdA | putative fimbrial-like protein | chromosome | CDS | 3191120 | 711 | - | 0.489451 | |
stdB | putative outer membrane usher protein | chromosome | CDS | 3188511 | 2490 | - | 0.607229 | |
stdC | putative fimbrial chaparone protein | chromosome | CDS | 3187727 | 744 | - | 0.58871 | |
stfA | putative fimbrial subunit | chromosome | CDS | 230657 | 561 | + | 0.520499 | |
stfC | putative fimbrial outer membrane usher | chromosome | CDS | 231303 | 2658 | + | 0.549661 | |
stfD | putative periplasmic fimbrial chaperone | chromosome | CDS | 233978 | 753 | + | 0.541833 | |
stfE | putaive minor fimbrial subunit | chromosome | CDS | 234749 | 513 | + | 0.559454 | |
sthA | putative fimbrial chaparone protein | chromosome | CDS | 4852095 | 684 | - | 0.461988 | |
sthB | putative fimbrial usher protein | chromosome | CDS | 4849512 | 2538 | - | 0.472025 | |
sthD | putative fimbrial subunit | chromosome | CDS | 4848937 | 558 | - | 0.505376 | |
sthE | putative major fimbrial subunit | chromosome | CDS | 4847811 | 1086 | - | 0.524862 | |
stiA | putative fimbrial subunit | chromosome | CDS | 208383 | 540 | - | 0.524074 | |
stiB | putative fimbrial chaparone | chromosome | CDS | 207652 | 684 | - | 0.530702 | |
stiC | putativie fimbrial usher | chromosome | CDS | 205079 | 2547 | - | 0.553592 | |
stiH | putative fimbriae | chromosome | CDS | 203991 | 1080 | - | 0.526852 | |
stjB | putative fimbrial usher protein | chromosome | CDS | 4826467 | 2409 | - | 0.493566 | |
stjC | putative fimbrial chaparone protein | chromosome | CDS | 4828889 | 708 | - | 0.456215 | |
tatA | component of Sec-independent protein secretion pathway | chromosome | CDS | 4180504 | 255 | + | 0.454902 | |
tatB | component of Sec-independent protein secretion pathway | chromosome | CDS | 4180762 | 549 | + | 0.542805 | |
tatC | component of sec-independent protein export | chromosome | CDS | 4181313 | 780 | + | 0.502564 | |
tolB | tol protein required for outer membrane integrity | chromosome | CDS | 815964 | 1293 | + | 0.556845 | |
tolC | outer membrane channel | chromosome | CDS | 3348567 | 1476 | + | 0.520325 | |
tolQ | tol protein, membrane-spanning inner membrane protein | chromosome | CDS | 813428 | 693 | + | 0.52381 | |
tolR | tol protein, role in outer membrane integrity | chromosome | CDS | 814124 | 429 | + | 0.51049 | |
yajC | preprotein translocase IISP family, membrane subunit | chromosome | CDS | 461971 | 333 | + | 0.51952 | |
ybbJ | putative membrane protein implicated in regulation of membrane protease activity | chromosome | CDS | 560973 | 453 | - | 0.607064 | |
ybeC | putative Sec-independent protein secretion pathway component | chromosome | CDS | 694573 | 204 | + | 0.495098 | |
ychE | putative MarC family integral membrane protein | chromosome | CDS | 1842004 | 648 | - | 0.506173 | |
yggR | putative protein transport | chromosome | CDS | 3259946 | 981 | - | 0.572885 | |
yidC | putative preprotein translocase subunit YidC | chromosome | CDS | 4046425 | 1647 | + | 0.544019 | |
yohG | putative outer membrane efflux protein | chromosome | CDS | 2268829 | 1437 | - | 0.576896 | |
yrfC | putative inner membrane protein | chromosome | CDS | 3645214 | 540 | - | 0.592593 |