Gene list
Applied filters:
COG category: Transcription
Gene type: CDS
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 252
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View as list | ||||
# Rhodopseudomonas palustris HaA2, HaA2 >RPB_1327 GCN5-related N-acetyltransferase MTASVAPRGQVRALGPADTDRYCNHLARLDPAARRMRFFADVSDFHVLFH AGAALSDGRAVVGYVEDDEIRGACELLETDRADHGAEAAFSVESDWRCQG IGGLLMAAMIADARRRGVLRIEMQCLKSNAPMQALAARFTSDLRQIGDTT LAVLDNSPAIPAA >RPB_3549 sigma-24 (FecI-like) MRALHFCARPHRSGVAPSYGDKFAFDCRTFRGFQPTYCARRPVSNKQATA DEVLIARIAQGDRSAMQVLYGRHQVRVFRFGLRLVRNEQIAEDLISEVFL DVWRQAGKFEGRSSVSTWLLAITRFKALSALRRRKDAELDDEAAAAIEDP SDDPEVAVQKKDTSDVLRKCLEGLSSDHREIVDLVYYHEKSVEEVAHIVG IPENTVKTRLFYARKKLADLLQAAGVQRGWP >RPB_0178 transcriptional regulator, LysR family MALTSARMRAINAVFETGSFAAAARHIGVSQSAVAQSVRELEAEFDVALF ERHGSSLIPTSLCRQLYGATSKMQAVEADALSILQQRGELAGGELRVGLG NSMPGMALIAAFKRLYPKVQVAIEIGSWSAIVAAVVEQRVDIGVLPEVPA DKRFRREICLAQRVVALCHPDHPLQGREQVGIAELTQYPLVFRSRDSSTQ RTVDRAFRDKGLRPAPSLIVNTREGILEAVANQLGIGFMWEQGSSRTDGI ARISVPELDAEVPECIFALAGKKGRLVELFFLARGTHGVA >RPB_1709 transcriptional regulator, MarR family MRRFSRSLPMALLRGREAVMRHFRPLLRAHGLSEQQWRILRALTEVEAIE VTELADRAFLLGPSLSRMLRDLEARKWIARKPAKDDQRRSRVSITPKGLK LIETVAPFSEQIYADIARHFGDAKLAALQDMLGALEADLTRMPVRHAADA VDSGPDFRSTVRSKRRPAKSTAAKGGRR >RPB_4510 transcriptional regulator, LysR family MDRLDCLRAFVKTMEGGSFSGAAKELGLGQPAVSKRIALLEKEFGSQLFM RNTRKLTPTREAHRIYDLARQALSCIEMARASIAEAPAVPTGMLRLGVPS SFGRHYIMPVIEQYLRDYPQVKVDIRFSEQTVNLVEDGIELALRIGDLES SSLKARRIGLVRRFLVATPAYLRRQPQPQLPGDLKNLHCIAYARLSPANQ WAFDSELGRHVVQISASIMVDDADAMKQAVLQNLGVAILPAWSAADAVRS GEMEIVLPEFAVPALPLNAVYADTQWMSLRARCFLDLLIARSHRFSEDVD GAGPPRRF >RPB_0193 transcriptional regulator, AraC family MTTSGANNVRVADSCRSWRTALAEPKRVSAVDRASEEVGRPPRSAIRSWG QRKIEAGYWSIDWPGVIQREMSLSTRAFCELSMVLTPVDDMTLLRGETTI RTGPLQSGRFRVAPANAALSASVSASGPVKFLKVFFAEETARAIGSAIHS HSIDIELEDPMLGTNDPLLVALGREVVENMNDPRPTNRAFAEEAAILMAG RVVSHYSTARYCTSIAVRSPGLDPNLDRALQLMRDHIGDSIDLGMLAASV DMSAFSFVRAFKKKYGLPPIRYHRGMRIEWAKTLLSTTACPVGKISNMLG FSEPSHFVSAFRKTTGCTPLAYRRFRS >RPB_1917 ErfK/YbiS/YcfS/YnhG MMNNRILTLLATVAAISAGTSVVHAQNYPSAPGSYVTPAPGDYRQEMPNF DNVDDEDGIGSSAALPPPGLVTSPDDPRYGRPSSAPVYSDRAPVPQGPVM SPDDPRYGRPMGAPPVYSERAPVPQGPVMSPDDPRYGRPAGPPSVIYSNR GDGSLRPPEGVAGAGQPGVPQVATGSVPAAPQIGADGRPLQVAALPPEEQ PDADQEFQLPQHLRRQEVAFPTKEPAGTIVVDTGNTYLYYILGNGRAMRY GVRVGRDGFTWNGVQKVSRKAEWPDWHPPTEMIERQPYLPRFMAGGPGNP MGARAMYLGSTVYRIHGTNQPSTIGKFVSSGCIGMLNDDVSDLFERVKVG TRVVVLPGGAPPTPTASAQSPQPVASAQPPQQSLQMSVPGTQPTSVAPLP PPVTIR >RPB_0059 two component transcriptional regulator, Fis family MNAIPELNDHADRSLLIVEDDKPFLERLSRAMETRGFEVTSCDSVSSGLA QIGKAAPAFAVVDLRLGDGNGLDVVSALKKERPDARAIVLTGYGNIATAV TAVKMGAVDYLSKPADADDVVAALLASGTEKSELPNNPMSADRVRWEHIQ RIYEMCNRNVSETARRLNMHRRTLQRILAKRAPR >RPB_2964 GCN5-related N-acetyltransferase MAVEIRPVGPDERAAWEPLWAGYLEFYKATLAPGTSDVTWARFHDAAEPM YLLGAYVDGRLTGIVQFLYHRSCWTAGDYCYLQDLFVADSARGLGLGRKL IEAVYARAKADGCSRVHWLTQTGNATARLLYDRIADDSGFMQYRKIL >RPB_3317 response regulator receiver domain protein MKVLLVEDEEHKANDLTARLYKLGIAKHDLTTVSGVRHAVLHVTEGHFSL IIVDMALPTFSDISSEGSGGGDAQAVGGIEVLRALFAAGVSSTIIIVTQY PDIIVSGTRVRLTSAARVLSKKYKQNVLGAVLYSYKSPDWETAFDTLVRK AQ >RPB_3045 transcriptional regulator, AraC family MSDASASAIVPDYPLNRTPVVHTTDIAEMRHALINFYGARAFSAEAEGFE GFGSFVKLDVTAFGFCRYASQAVAEFSETDFARLQIALCGTGRTTSGGSS VEVDPSRWCVSSPGAPTVLEFGADYEQLIIRFSNEKLMATLEAMLGVKPR GRLVFAPSVRIDDCGARALRDLGLFLARHVDPAQAPLPPLMLRELEHTLM VSLLSVARHNFSDQLDRDAPDCAPDYVRVAEEFIAASWNRAITINDLAAV TNVGVRSLFKSFQKHRGYSPMAFAKTVRLNKAREMLLQGDPSRSVTSVAF ACGFSNLGHFAHDYRQKHGELPSETLARAR >RPB_2852 DEAD/DEAH box helicase MSARRGALQLAQNASKAAGHIRPNRAGPMRPALLNPLFAPVTGLTGVGPK QDKLFRYLLDRDDTPRLADLLLHLPVSVIDRRSRPKIRDAQPGTVVTLEV TVDRHRPPPPGRSRAPYLVYASDETGDVILTFFRAKPEFVEKLLPVGAKR YVSGTGQLYDGTLQIVHPDRVVDEEGFAKLPKIDPVYPLTEGLAIGSLRR AVAQALTRLPALPEWISPEVLRRCSFPAFAEALQRVHIPHEPTDILPDGP FWSRLAYDELLAGQLALALVRAQLRRPAGTRNAGDGRLRHKIIDALPYAL TASQQAAAAAIAEDLQQPVRMLRLLQGDVGSGKTVVALLAAAAVAEAGKQ AALMAPTEILARQHIKTIAPLAERAGMQVAILTGREKGKERRDLLARLEA GEIDFLVGTHALIQDDVTYNSLALAVVDEQHRFGVRERLALTSKGDAVDV LVLSATPIPRTLVLTYFGDMDVSELREKPAGRQPIDTRALSDTRLPEVID GIGRAIAAGKRVYWICPLVEESENVKLTDAEQRYESLRQRFGDQQVGLVH GRMKGADKDRVMAQFAGGEISVLVATTVVEVGVDVPEASIMVIENAERFG LAQLHQLRGRIGRGSEASTCLLLYKEPLGEMSAARLRVIRETADGFRIAE EDLKLRGEGDVLGTRQSGLPGYRIARSEVHGQLITQARDEALRILEDNPK LEGPSGEALRCLLYLYERDEAIPLLGAG >RPB_2612 Ribonuclease III MIEDVTSIDSPPMASDPAGSEQPAEQPAGRKRRSKAKSKAVAVAIEQRIG HSFADPSLLNTALTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLYR AFPNADEGELSKRLADLVRKETCADVARSLDLDEGVKLGTVGAGAGARLR KSVLGDICEAVIGAVFLDGGYPAAAEFVQRNWTERMRKPTRSLRDPKTVL QEWAQGKGLPTPVYREVERTGPHHDPQFRVAVSLPGLDPAEGVGGSKRAA EKVAASVMLAREGVSAGGNDA >RPB_3893 transcriptional regulator, MarR family MQTRSDVMKKRIRADDSRFLSNRSPFFHNVRMLARYSARMNAILKPAGLD VPKWRVLMLLVEGRPLTVSQIADEAVVNISTMAKIINRMTDDGLVTTRTS STDARSTDVFITEQGERVLELVREKVSYLFKEALRGLTKAEVQLLNTLSV KIYDNLSP >RPB_3030 transcriptional regulator, AraC family MIGVLIYPDFQLLDAAGPIAAFEIAGRYARNTEPIRTIAATPGAVRSSSG VEMLARGLRHDRAMRTLIIAGGDGVRAAAGCSRTLAFLRAAAARGCRIAS VCSGAYLLAEAGLLDGRRATTHWSRTRDFLERYPRVRLEPDRIFVRDGEV WTSAGISAGIDLALAIIAEQHSDAIARDTARQLVLAQRRAGGQSQFSSLL ELQAPSGRFAALLGWVREHLGEHLTVERLAEQAGMSARHFTRAFIAETGS TPAKAVERLRVEAAKSRVQASGEAIEQVARTTGFGDPERMRRAFLRAFGQ PPQALRRAARAA >RPB_3372 GCN5-related N-acetyltransferase MNVNPKPALRPYLPEDAEIAASIFVASIEQLTSDDYSEAQQEAWASAADD DEKFGAKLAAQLTLIATLGGAPVGFASLEGAGHIDMLFVHPDFVGQRVGA TLIDALEKLAGARGAQALTVDASDNAAEFFAKRGYVATQRNTVTINGEWL ANTSMKKTLAEPAAPGADQ >RPB_3321 transcriptional regulator, LuxR family MSRGALEDTLTFVAALDRANTPDIVADKLLGVVRPFGYSQVLAGIIPTPR TSVKQQIANVVLHRWPLRWSERYFSRGYLFEDPTIRRVSTSSEPFVWSEL QVGPDARANEIMREAGEFGLGCGFTVPMITLDGQSAGLSIAGDRAELPPS HRGMVQLVAMYAFLRSLKLGEKPTPAITLTKREADVLHWIAEGKTDWEIS KILRVSEHLVDKMARQIRTKLGAVNRIQAVALAMRSGIIR >RPB_1819 transcriptional regulator, LuxR family MPRDRCDPSLAPLLGSALLNIYALSRGTEVGRFQQAALQRVAEDLPFHSA WWGMAQAQPGGGFALHSSFRYALPEHFVASWEKVALDDDVARTVAARPGA TGRFSRDDLGRTRGLAQMSERYDIGSILSTVIFDRRLGVATFLSLYRRVT APGFGEAERDFKELLMPHLTAAWHANWLQHFDGLRSIDEHRGAGLALADR RGILHIADASFAELMRCEWAGWNGPALPPAVLASAGGEAAYQGRGLRVGS SREGDLIVFHARPRTPLDLLSTREAEIAACYGLGLSYKEIAARLACSPYT VRHHLRGIYDKLGVSNKAALARLAGQIAAQPSAGGTSDR >RPB_2984 transcriptional regulator, AraC family MPPPSDAHSTCQTPPTELLKDFAILRTNDPDTARKLVWSRFGLNLSTPRI EGFFSRANIAELPNVSLYFCANSTPVALQIPNSKGAHVHLCLRGRGTLIH DRRRIEIGEGEAFVCSPGKPALLDFAAGYEELALHVPVPMLERTFAALTG LGPHTTIAFEPEIITDDPHYAGFRDLVLLLAGSLDAAFSAWPKATIAQLE LACVSQLLYCTSHNLRRVLCPEDFGAVPSLVRIAEHYIESRCESDASVDD IARACAVSVSTLTRMFMKYRGYSPAAFIKRAKLARARQLLESRAASTVVG VALRCGFANPSRFAKDYREAFGESPTETLRRRRPQD >RPB_2232 sigma-24 (FecI-like) MSVVSKLRLRALLEANYQQFRLRLRRRLGSDAMAMEVLHDTWLRLDRIGD ASAVQKPAAYLFRMALNEASDRREADARKLSAAEIETLRHMSDQMLDPEQ IAQARREVTQLAAALDELPPRRKAIVLLARVHEMKHTDIAVHFGISPRMV EKELVQALEHCARRLERKVVRRFGPRSQKPS >RPB_4649 two component transcriptional regulator, winged helix family MSVKSRVLVVDDEPAILRFLKPALEANGYDVSHAATVTEAIKRVAADAPD IVLLDLGLADGDGKDVIRQVRAWSDLPILVLSAREREAEKIESLDLGADD YVNKPFNSGELMARMRAALRHRMQRNAEPAALSVGGIEIDAVRHRVTRDG DEIKLTPKEFELLAFLVRHAGRVVTHRQILAAVWGPAHTSDTQYLRVYIG QLRQKIEAHADEPRIILTEPGIGYRIGDAG >RPB_3417 transcriptional regulator, AraC family MGTLGNSVDKYVTGRMLQTSNDRRWSHLLAERWSHQAGELPSLLPRDTEI AVLLRGSSVVDRAGGGMRQRTHGRRGTIWLCPAGIREDFIRVESEMHECL HIFLPGRPFDDTMLQDMDIDPARIGIRYEAIGQDIFIDYVADQIVRELAE ESSTGRLLIESLGRALTAHLVHRYADTAVPRKPANAASRPLDAKRLTRVT DFINASVERDFTVSDLAAVACMSPAHFSRSFKAATGCAPHEYLSRQRLDL AKRLLASGHRSLADIAYATGFSSQANFNRAFRKALGTTPSAYRAQQRSD >RPB_0486 sigma-24 (FecI-like) MDHPRRKPPAVSQDLSDCIVRIATDHDEAAFDVLFRHYAPRLKSYFTRRG GDPAMAEEITQETMVSVWKNAAQFDPAKASATTWIFTIARNLGIDRLRRA KRPSFDPHDPAFVPDEEDPPDRQFERAEAQRRVRDVMNTLSSNEKSVLML SFYENQSHGEIAQRLGLPVGTVKSRIRLAFGKLRAALEPLTGAGR >RPB_3660 transcriptional regulator, AraC family MRARSALQRVVYSAHDLSPGLDDQARFSRWRDIYTASFLQSGNVVRLSDR PFAATWEHAQIGDSLVARFEGTLQRVSRDAQQVAAHPVDRFCISYNRASS RQAMVQRGRELTLEPGTPAFFNLSEMLDCRSEHGEARIGFTLPRKTLLDS IPHAEDLVLRPLDPGDDALLHLRWYLDFLLERDGAALDPAMVAHVQSVLI DLLGLALGVGRDLAEASKLRGLRAVRFMTIVAEIGAGFADPGFSAARLAA KLNLSSRYIQDILHESGVTLTERVLELRLQKARRLLASGLSPALKVTDIA LSCGFSDVSHFNHSFRRRFGASPTQFRPPRIN >RPB_2267 transcriptional regulator, IclR family MNNPSDALVFAQRTRLGSPTRCLQCPQMPKLKRDESELPDTEHIESLARG LRLIEVFGAERRPMTLSDVAKACGLPRATARRILLTLQKSGFVTSDERLF ELTPRVLRLASAYLASNQISTLLQPAMDLVSDKAKEVCSLAIWDGDDAVF VARSSPARVFSAGIDLGYRLPLFCTSVGRVLLGRLGNDDLAATIDRMTLT KQTDTTLIDKPTLVATIIADRTKGYSLVDCEAEPAFRSIAVPVRRYDGMI VAAANIGAHVDRITTGEMIDRFLPPLKRMAEDVRPLVM >RPB_0235 transcriptional regulator, GntR family MAATYRRPATGSDGTHERRFAPRTLPDQVAEELGAEIVSGRRKAGERLVE LDLARDFGVSRGPIREAIRILERRRLVELLPRRGAYIKPVSLKSVADLFN VRTALSMLAVRTMATTPVESYIDTLARRCAELKAQVEPDDPIAFARTTTR AVKTIARGSGNQLLVELLTDLADQTVWTTIWKSPLDYQTPEIRRLSADLM ASTLKAIRQRRPNAAVTHLGELLEGDRDRALATLSQIRGEAFDLSALAHV DETGAAPTTIAGSARTA >RPB_0609 transcriptional regulator, LysR family MVTLRQLRYLSALARFGHFGRAAEACAVTQPALSMQIADLERTLGVKVVE RRPGEVFLTEIGREIARRGEDLLTASRDLVDFARHRAQPLTGRLTLGVIP SLAPYLLPKLLPLLQQRYPELRLELRESQTRQLVTEVGSGALDAALLALP AGNRELDAITLFDDEFLLAVPADDPRPETATVAVDEIDQSRLILLEDGHC LRDQALAFCATARNRAIAIGGTSTTTFGASSLTTVIQMVAGGYGVTLIPQ IAAEIERRDTRVKFLRLRRPQPGRTIGLAFRKTSPRRQDFEALGEVVREG VGGRSSMAQPAA >RPB_1134 transcriptional regulator, AraC family MRLRRVVRFLLRDPGVSFGSVDMSASGTIACGPVQQLLVALARSRPESAG INARVGISRATLDDPSGMLPLAAFTSMLEAAAHESGNRTLGIELGRDFKL AALGPISDLMRTAQTVGDALESFSGFFASIQTSTRTTLSVSDGIARLSYA IEDPAIRFREQDAGFSLAIEYSMLAGFLGPAWRASGVEFEHAAGDDLPFY QQHFDCPLRFGRRENALLFQARCLDVPLQQADRNLHARLRADLAEVIQRR ATRLDLVRGIEAWIAASLCRSVATDIEVVACDFGMSTRSFQRRLADHGVN YLDIRNRVRSHIAKCMLAETGAPVTSIALQLGYSETSAFSRGFKSQVGET PVEFRKRRRGIDPAAAAAA >RPB_3241 transcriptional regulator, ArsR family MVQFVHPARDDISLEGVLGALSDPMRLRIVKALLAEGDCLSCSAAAPCPE MAKSTLSNHFRVLRDAGLIQTTKKGVENRNTVREADINARFPGLLKAILK HAGE >RPB_2839 transcriptional regulator, LysR family MLAPLDLRLLQTFIVLVQTGSFSETSRRLGRTQPAVSLQLNRLQDATGAP LFTKVGRKLVLTNHGELVLGYARTIMGLQDELRSRLAAPKLDGMVVLGMP DLYAAYLLPGILADFRSAYPNVNVELKCALSSKLMASVERAEIDLAIVTG MPAFKVGELVAQEELVWVTSERGSVHLENPVPLAMLPPGNIFRDFGLAAL ESIGRTWRLRCISESIGGIQAAVFAGIAVSVVGKSSVLPGMRTLGRGDTF PALPKVDLVMYRSARRANPAAEALAGVIVRHFANSALAPSARFVRTQAGS GSHD >RPB_0902 transcriptional regulator, MarR family MSKLDLFSFVPFQLNRLAAEVSAALAGEYQQRYGLDIPGWRILATLGFRD DACTAQFISQCTRTHKSTISRAVTALLERELIERVENEDDRREFRLRLTA KGRALYHELVPRLKRKEQEILSCLSARERTDLAAALGKIERHLDLIQASH DQDQPAAIKPRLSAG >RPB_4035 two component transcriptional regulator, LuxR family MEAHPMDQQAPSRLRVFLADDHPVVLSGMKALVAGDPALEVVGEASDGPN ALRRATELRPDVAVLDLSMPGLNGIEVARKFLAACPECRVLVLTVHEDGA YLRQLLDLGVSGYVLKRSATEELIRGIHAVGTGGIYLDPAIAGRAIGRSA PHVHNSEEHSAVSELSTREIEVLRLAAVGHSNKTIAAKLQIGAKSVETYK ARGMAKLGFHNRVEVVRFALSMGWLADP >RPB_4307 transcriptional regulator, PadR-like family MEGIDNGLRRCGSGCRWGRRGFGGRGAGNGETTRAGRMLAQGDLKLIALA LIAEQPRHGYDIIKVIEEKTAGWYAPSPGVVYPTLTYLEEMGHVVAQPEG AKKLYVITDDGRDQLAANRVLADAVFERLASFGEMMRQQTGNGGGAEGGD VPPLLRAALDNLRDVAIRQIAKDADNEAELVAILARAAGELRKV >RPB_2330 metal dependent phosphohydrolase MSAWGHSAEWGAGRSGEAVRGRPHDGLRLRPLLVFDDPAYESDFVRYYNR FYYRYAQVSLIVGMLLVSADFLVDLLASKATPANLDRLLLCVPLLGLGLV GSFADYARRHWQPVMSGLITAIAGSLFWVLLVIDNQGGMGMTSWVGILNF VFLEFYCFVVLGVQFRYALAAGAIVLAMFELALLRAIGADSGAFLYLSYH AATLFILAAGIGWWREFLLRKGFAAQTSLRAAQNVLRNQNGHLELEVEKS TQRIQRTQDVTIEILTSLAETRDNETGNHIRRTQHYVRALARRLQSHPAF AAYLVEAQIDMLFKYAPLHDIGKVGIPDSILLKPGKLDPHEFEIMKTHTT LGYQTIVNAEKRLGTPVAFLACAKEIALSHHEHWDGNGYPNRLAGEAIPI SARLMAVADVYDALTSRRVYKDAMPHDRAVAIIKDGSGRQFDPDVVDAFV AIAADEFKTIAARYAD >RPB_0033 transcriptional regulator, MarR family MRFSAPARHIDSMLPFWQYTVMTDEAHAPFDHPANALVLEVFRLNGALIR FGDALVKPLGLSSARWQVLGSIAHGRGTFSVARLADNMGLARQSVQRIVD ELAEAGLVGFEANPAHKRAKLVVMTPRGERAFARATDLWRPVADAMAGGL AARDLRKTIDNLAALRGRLEDQSENGSSA >RPB_0655 sigma-54 (RpoN) MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLATFVEDELEKNPLLD RASDNAEPPVAGEAVMERAEASGDDFGGSESSGDGSDFSDGVGSDSFEPG AEDWMHRDLGSRSEIEQTLDTGMENVFPEEPAEAAARAAQDAAPASYTEW GGGASSDEGYNLEAFVAAETSLADRLAEQLAVALTAPSQRMIGQYLIDLV DDAGYLPPDLGDAAERLGTTQAEVEAVVAVLQTFDPPGICARSLAECLAI QLRELDRFDPAMQALVENLDLLAKRDIASLRKLCGVDDEDLADMIGEIRH LDPKPGLKFASSRVQTVVPDVFVRPGPDGGWLVELNSDTLPKVLVNQSYY SELSKTIRKDGDKSYFSDCLQNATWLVRALDQRARTILKVATEIVRQQDG FFTHGVAHLRPLNLKAVADAIQMHESTVSRVTANKYMATNRGTFELKYFF TASIASADGGEAHSAEAVRHHIRQLIDGEEPTAILSDDTIVERLREAGIE IARRTVAKYREAMRIPSSVQRRRDKQSMLGTALAAPADRSRDTAPA >RPB_0799 transcriptional regulator, AraC family MTASTVLHRGTITVSDFRCSAGPDDVPFAECHVAHSISYVRRGSFGCTTR GRTYELVAGAVMIGRPGDDYVCSHEHHACGDECLSFALTPELAATLGDDD TLWRSGAVPPRAELMVLGEQAQAAAEGRNDLGLDEIGQVLAQRFATIGGG RAYQPPPLRARDRRRVVETALWIEAQCTEAIDLEAAAARAGLSPFHFLRL FSAVLGVTPHQYLVRSRLRRAARLLAADDGPITDIAYEVGFADLSNFIRS FRRAAGLSPRAFRKASRQDRNFVQERLGAV >RPB_1659 transcriptional regulator, MarR family MSKKKVTDKRRGKSKSTSHYLLDAQVGFVLRQVLQRHATIFVGRMGEDLT MTQWAALSKLLELGPCSQNLLGRHTAMDAATIKGVVERLVKRGLLETSPD PEDGRRLLVALTPEGAALAERSIPVAHEITKATLSPLAKEERTLFLSLLE RLK >RPB_4657 transcriptional regulator, XRE family with shikimate kinase activity MTQSAESDASFLLELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESG KGNVSIMLLRRVSDALATPLEDLLPSGDPSIDWPVIRDLVRRATPVQIAH AKDVLSGMGRLGAGARREHAFHGIALIGLRGAGKSTLGRMLADKIGWAFV ELNKEIERQNGLSVAEIIALYGQEGFRRMEQAALAQLLARKELMVLATGG GIVSEAITFDQILSSFYTIWLKAEPEEHMARVRGQGDLRPMADDRAAMQE LRTILQSREPLYARASGVLDTAGLTVEAAAAKLTAMVSPVLCRDACAFGL KNEAV >RPB_3651 transcriptional regulator, TetR family MNSLRMTRDLRRELILGAAKRCFARNGFAGTTTRSVATAASISEGLLFKH FPSKSALYAEILAEECEADPALVHLLDLPPSTEALVVVVRNMVVHFLHVS DQPDGEEAQRLRLLVTSQLDDGEFARLVFEKISGLIGPKFAASLDRAVAA GEATRIGQEPMNLFWFAYHTLVTMALGRLPAVPCLAYGEAAALERQTCEY ILRGIGLNDDVIAAHLDRELSPEQTSAETTESA >RPB_1970 transcriptional regulator, ArsR family, ArsR1 MDSENAILALGALAQATRLEAFRLLAAHEPDGMAAGAIADALAVPQNTMS SHLAILARAGLISARRHSRSIVYRADLARFQQIALFLIKDCCGGSPELCA PLIADLQPRCAPPAKTAARSRARAASR >RPB_2431 transcriptional regulator, TetR family MRKTREQSRLETRERLIASAHAAIRRDGIGGLSLRRLCEEAGYSQGAFYS NFASRDDLLLVLMERHVLGEVETLRRLVQVMDGEALGDVPATVAARLADL AQQTEWSLLSIELQLHAQRDARFADAYNAAKISYHAEFARLVEDILQRHN LAPALPPLQIGIGLYALWSGLAVQGTVPGAGPRDEIFLAFLRAVIGGSPS PADGRQPSADQSAS >RPB_0097 transcriptional regulator, TetR family MNEQAKTSDDPRRAAILQAAFDVFVEKGFEAATTAEIVRRAKTSKRTLYE FFASKQDILSALVRYGSQKMQPSLDLPAPQDRAQFLVVLEQFGQRFLGEL LHPERTAMYRLAIAEAGRGGGMVARELDANGRQPVMRAATRFFDQAAARG IIRGDDIATLLSVYFSVLIGFAQLQTLLGAEPPFDAEAIAQRAALATRAT ERMMRPA >RPB_0463 two component transcriptional regulator, winged helix family MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAI LDIKMPRMDGMETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIR KPFSQRLLVERVKAVLRRSAPKDPAAAPKETDAKALDRGLLRMDPERHTC TWKNEPVTLTVTEFLILQALATRPGVVKSRNALMDAAYDDQVYVDDRTID SHIKRLRKKFKVVDDDFEMIETLYGVGYRFKET >RPB_4406 transcriptional regulator, IclR family MVSVGKTATGSQTVARALAVLELLGQEGELGVRELGRQLGVAPSIAQRLI NTLSEAGFVEKSLGNSKWKIGYKAFQIGSAFLASTDLNAATAPELHLLAE QHQVNSFLGVLRGQDVVYLATVQSGGPISITNAPGSRTYLHSTALGKALL LDRSDDEVQALLGTGPLKQLTKKTKRSVSAILKDLKEGRRLGYVICDEEN LENVFAVGVPVRDASGGIIAALSGAVPRQRLSARAIEELCELVKASATRA SRRLGSLK >RPB_4668 sigma-24 (FecI-like) MQNVIAINDAGRQGIAAAQATTDDMLLANIAAGDRTSMHTLYSRHNVRVY RFILRMVRDGATAEDLVSQVFLDVWRTARQFEGRAQVSTWLLSIARFKAL TALRQRQHEDIDQDDVLEIPDGADTPEAALDRSRTSDILRSCIAKLSPAH REIIHLVYYHEKSVEEVGRLVGIPQSTVKTRMFYARKQLAELLKRHGVET MAA >RPB_1078 transcriptional regulator, MarR family with Acetyltransferase activity MSSPVPPDQVDTVRGFNRFYTRRLGVLEQHLLNTPFSLTEARVLYELAYR EAPLAKEIGAELGIDAGYLSRILQSFDDQGLISRKPSPDDRRQSRIGLTA KGRTTYGRLEQRSQQEIAAMLAGLQPSERSRLVASMTTIERLLRAAPSQG PVLRGPQPGDIGWVVQSHGAFYAAEYGFDTSFEALVAEIAGRFLASHDPR RERCWIAELDGAQAGSLFLVQASDEVAKLRLLLVTPQARGHRLGQRMVQE AICFARQCGYRKVTLWTQSILVAARKIYQDAGFILVATEPHRSFGTDLIG ETWELTL >RPB_4063 transcriptional regulator, GntR family MRKINASSDADRHAHGMDLSIDSHVPKYAQIADIFRQRIARGSWSRGMRL PANEALAEEFGVSRVTIRQAVELLARDGILEAQQGRGTFITGQVKQDRWL KVETSLSDLAEVYQDTSPEIINIAESISKAPLIEADGKAAARYVFMRRVH SRGGQPYCVISIYLDETIFRRSPAKFRKQTVIPILKDLKNPAIASARQTL TIGTADLEVARLLRVPLNSPVAEVRRVFTAADRTVIYLGEVTYRGDFVRI DMDLRP >RPB_2619 putative transcriptional regulator MSRSPARNLHPLPPAPEPASDAAVLTERFSAWQAQGLDASRCPVRNVLDH LGSKWSTLLLIALAEKPVRFNALLRTVPDISRRMLTQTLRHLERDGLVAR QVFPTKPPSVEYRLSAAGRSVLTPLTALVGWAESHFAEIEQARARFDAAE ATAPVSSGETAYPL >RPB_0388 parB-like partition proteins MADEHRSRLGRGLASLIGDVGGEAAHVERPRAQRKVPIEFIKANPRNPRR SFTDAELGELSDSIKQHGVIQPIVVRPVKGTNDRFEIIAGERRWRAAQRA GLHEVPIVPVDVSDALALEIAIVENVQRENLNPLEEAQGYHALANEFKRS QDEIAKIVGKSRSHVANMMRLTKLPDDVLELIAAGQLSAGHARALIGVPD PSAAAKRIVAEGLNVRQTEALAHDEGVPERKPQKPRASASAKPAKDADTL ALEKRVSDALGMKVTIDDRDGTGSLQIRYADLDQLDDIIRRLEAGG >RPB_3770 transcriptional regulator, LysR family MDRFEAMSVLLAVVDAGSLSAGARRLHAPLATISRKVGELEKHLGVRLVR RTSRGLTLTEEGRAFVAASRRILEELETAERQAAGDYGALRGALHVTAPV AFGERHLLPIALDFLKQQPEINLRLTLADQQVSLADAQIDVALRIGHLAD SALIGTRVGTVRRVLCASPDYLARRGVPRRPDDLAGHDGISFQGFATAPE WRYRRDSAAFAVDPRPKLAVNTTEAAIQSALAGVGIIRVLSYQVSDQLRA GQLRELLPDFAPEPLPVNLIHAPAVPLPPKVRSFLDWTAPRLRAGIGQWS D >RPB_4262 transcriptional regulator, TetR family MVQKSRAPSRAAAKPKSPAMPDAAPAPKKRGRPRSYEPEQALGQALDLFR QSGFAATSLDELSAATGLNRPSLYGAFGDKRELYIKSFARYRSDARARIT EAIAGEAPVRQRLKRLYDATLDIYLSGENGPRGCFTVMTAASEAMADPEI RAMVQDTLGELDRAFAGLLRQAQQQGELPSSADPQLLGQLAAATVHTLSV RARAGTPRPALDQIADAAIELICGPA >RPB_3312 hypothetical protein MAIKGEPNGLQASIPHRHRRDIQDLQRMPTMTESNYYAPGDGPLYRWNGK PRTKKRTVTMPAGSVHPLVRLVFGEMSRQARRYDDVETASGVRRASIKAW RKRNAPGLASITATLNTLGYDLVPVPAPEVIPTEIAPDLAALSSKLETTM PDAWAAIVSFAANQQLAREAAAQTLAKIDAARPLN >RPB_4385 two component transcriptional regulator, winged helix family MKHILVVDDDSRLRSMLVDYLTQHAFRASAAKDSHQLGQILANDPADLII VDLNLGREDGLEIVRSHSTKSDAPIIIISGDRLDEADKVVGLELGASDYI TKPFGLREFVARIRAALRVKSPAVLPDRSIYRFGDWMLNAKRRQLASRAA GEVKLTAAEFNLLMAFLGAPKQVLSREQLLAASRVHNEEIFDRSIDVLIL RLRRKLEPDPSNPKLIVTERGAGYVLDADVAVEHRPVGRKM >RPB_2276 NusG antitermination factor MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRR GRKVDAERKFFPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISE AEAMRILHQVQEGVERPKASVSFEIGENVRVADGPFASFSGVVEEIDEAR SRVKVAVSIFGRATPVELEFGQVEKV >RPB_0455 sigma 32 (RpoH) MARAATLPVLNGESGLARYLAEIRKFPMLEPQQEYMFAKRWREHDDRDAA HHLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPDKGFR LATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALD EGDMHPDQVKLIAKRLGVTEQDVIDMNRRLGGDASLNAPIRDDGEPGEWQ DWLVDQSPNQEAVMAEHEELDHRRAALNGAIGVLNPRERRIFEARRLADE PMTLEDLAAEFGVSRERVRQIEVRAFEKVQSAVKGTIARQEQAALEAAH >RPB_1745 transcriptional regulator, IclR family MKRPPKKAATDRSFVVALSRGLEVLRAFGPNDGLLGNQEIAARTKLPKPT ISRLTYTLTKLGYLTQVPRFEKYQLAPAAMSLGYAALANLGVRHLSQPFR DELMQQTGGAVAVGARDRISMIYVGQARSSLTVGVQLDVGSRIPIATTAM GRAYLCALQGDERASLLRDMREHYGSRWPRIKEGIERSEEMVAKHGFAIS VGEWQDDVHAAGVALTLNDGTGPYAFNCGAPAFRFTEDRLLNDIGPRLVA MVRKIEAALGGTAAPQSRRPDKSDNKKTKSGGKVARVVEGIR >RPB_3088 transcriptional regulator, AsnC family MFDPIMTQKIDQIDLRILAAMQADSSRSQRELAEEVGLSQNAFWRRLKAL EASGAITGYGARVSQEAVGVPMTVFVMVRTRRHSAEWLKRFRAQIESISE IVAFYRISGDFDYMLKIAARDMGNYDKVYQTIINKTELETVTSYFSMEAI IDGRPLPIGR >RPB_1808 sigma-24 (FecI-like) MPKPPEPTISDDAAASFATLRARLVRVAYRMLGSVAEAEDVVQDAYLRWH RTDRAEVRDPAGFLTRTVTRLCLDVLKSARLRRETYIGPWLPEPLIADPC EDEGDDITLTLMLALERLSPLERAAFLLHDVFGLGFDEIARTLDRDAAAC RQLAARARGHVRAERPRFPVSEERGQAIAGAFFEASRSGDLKALTALLAD DVVFYGDGGGKRPATLNPIFGLAKVARLFEGLARKHAPGASVVVSTGRID GLPGFVTTEPDGLIQTTALAIEHDRIVAIYVVRNPDKLRHLLALSAVPAR P >RPB_1644 transcriptional regulator, ArsR family MDPIDILSALAEETRLEALRLLWDGQEHCVCELMKRLGASQSRMSRHMGV LKVAGLVIDRRDAQWVRYRRNPNLDPKIIAVVEAVLALPARDRRAAA >RPB_0426 negative regulator of class I heat shock protein MAHHEPIGLIAPNTGLAQLNERSRDIFRQIVESYLATGEPVGSRNISRLI SMPLSPASVRNVMADLEQLGLIYAPHTSAGRLPTELGLRFFVDALMQVGD LTEPERQSIQAQLSSVGRAQTVEAALGEALTRLSGLTRAAAVVLTAKSNV RLKHLEFVRLEPERALVILVAEDGQVENRVLALPPGVPSSALTEASNFLN ARIRGRTLAEARLELETMLSQDRTELDQLTQKVISAGIASWSGGDGEDRQ LIVRGHANLLEDLHAMEDLERVRRLFDDLETKRGVVDLLGRAESAEGVRI FIGSENKLFSLSGSSTIIAPYSDGAGHIVGVLGVIGPTRLNYARVIPMVD YTARIVSQMLGG >RPB_3060 sigma-24 (FecI-like) MSHKLAGEFIDRIIALRPVLLRHAAFLIGSRADIGSPEDFVQDTLVTAFQ HGNRFDDGSLSGWLTAILRNHISNARRRANRRNLVLEPLDATGGGAGMND FPVVATQGLALDLEDAMAALSTLSSIDQEIIWLARVDGLSPEEIGARLGL AAGSVYSRLSRATTKLRATYDAPPAASLMRPRVPFRHAA >RPB_2144 transcriptional regulator, MarR family MPNRQNARKLAAADAAPARATAENDHRLSYQVIWDFVSISNNLEDMRRAW AKLFGISGSQWLILMAISDLDQGNGVSVGDVSDKIHAVSTFVTTQTKILE RLGLINRVSSTTDARVVLMSLSETAQTKMTELKPRWEALHEYIFRDFDAE ALHDVKAKLDMLKRRTKVAMQRVADDN >RPB_2694 transcriptional regulator, AraC family MLPERLSKVVCADDLERFAGASGSELRLVTPGVGGRDPILVGEFQRVQLR SGLALHTSNTREVHDLHTEAVQHPGLTIALFLRGHIDAWFGGRLIEMGPR TEDARDIEAIVVARSESDSFVRRSVKGARIRKLNVTITPEWLDQQALLSS PECAAILRFSRTHLATLRWTASPRLITLAEQILGPPLFAAPLQKLYYESR AIDVVSEALLAISDAPAQSGSATIHPTHHRSVRRACDFIDANLDHELMLP SIAAAAGLNSGSLQRAFRLLYGVTVFEYVRSRKLDRARAALERDGISVGE AAYLAGYKTPGNFSTAFRRRFGVTPRQIRATS >RPB_1700 transcriptional regulator, LysR family MDRLDAMAAFVAVADLNGFAPAARKLGLSPSAVTRLVAALEQRVGARLLQ RTTRSVALTDIGARYLERVKRILSDVEEAEASASAERIDPSGRLVVSAPV GFGRLHVAPLMSDYLLRYPDVAGELRLSDRIINLVEDGVDCAVRIGPLAD SSLVARQLGTMRRIVVASPDYLGARGVPMVPAEVAAHDTVHFGAITSTVT WRFVVDGRDVRVACTPRFATNAADAAILYAERGGGLTRVLAYQAAEAIRT GRLQVVLADYEAPPLPITIVYPTSRLLSAKVRTFVDLAAEICDWRFGAG >RPB_3757 transcriptional regulator, XRE family MNTTVSSAKAAAGAQPVRIGDYLRQWRQRRHLSQLDLALDAEISARHLSF VETGRAAPSRDMVMRLAERLDVPLRERNVLLVAAGFAPAFPQRTLDDPAL HAARAAVDQVLTAHEPNPALAVDRHWNLVSANRMVMPLLDGIAPDLLAPP LNVLRLSFHPEGLAARTANLGEWCAHLLERLHRQCEATADPKLIALYQEL KTYPVPARAAPIAPDAVAVPFRLRLGGEVLSFISTTMVFGTPVDVTLSEI AIETFFAADEATSARLRSMAAGL >RPB_1511 transcriptional regulator, LysR family MARHRDGFTDMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALE QELSVSLFHRHARGLILTEQGDLLFRTAHDVFMQLQAARAKLTDSRERPS GDLKITTTPGLGIHWLVPRLGEFTALYPEIRISLIVTDEELDLSMREADV AIRTRKPTQPDLIQRKLFSIGFHAYCSPEYIKHFGTPRTLEELDNHRLIM LSDSQVPPHLQNRSWLVDAGRNGSGPREPYFKVNNILGLVRACQQGLGIA ALPDYLVEDPNRLVQLFGEEDSIQLDTYFVYPEELKTVARVQVFRDFVVN KAQRWPS >RPB_0480 sigma-24 (FecI-like) MTEASWTVLREVLAERYDELCRRLAVRLGSKEAARETLHETWLHLRSGND PVEVQRPFGYLLRTALNLAISRERTEQRRNKQLDVVDMLELVDPAPGPER EAEARRQVEFLEQVLQELPPRRRAILLASRVEGVPLKRIAEHLGLSQRFV EMELKAALEYCARRFGKKLTRRFGPRSKEASS >RPB_4402 GCN5-related N-acetyltransferase MDVTIRAMRSEDAVEIFEIVNQRAFRFWTLSLPYESFDTIKKWLEPQSPR DLHFSAELDGRVVGASALRPFYGRRAHAAEFWIGVHEDYARRGIGTRLLA AMIDTADNWLNIKRIEMTVFTDNIGALALYSNFGFEIEGTHKAATFREGA FVDAHCMARLR >RPB_4088 transcriptional regulator, GntR family MTTLEPDSGVALWRKVADSIERGIADGHYAAGEKLPGEVEIAQAHRVNRH TVRRALAALAERGLVRAERGSGTYVETSRIAYPLRSRTRFSEIVGAGGHE PRGRLLAASREAATKDLARQLDLAAGAPLIRIEGLRLADRAPICVGTTWC SAERFPEAETLYRRFGSMTKVLAQYGVCDYRRASTRITAAIADAGDAARL DLGIGRPVLIVEALDVDGEGHPLLAIRSRFAAERVQFVVETE >RPB_1501 transcriptional regulator, AsnC family MTTETDPIDRKILRHLVQDARISQVVLSERVGLSPTACTRRMLQLEKTGV IRGYSADVDAAELGFTMTVLVHITLDKQSEDALSAFEREIVKCPDVVSCF LMSGNDDYLVQVQARDMQDYERIHKQHLSRMPGVSRLHSSFVMRSVIERS ISPAALGG >RPB_4624 putative phage repressor MQMLTHDQIWTALDRLAERSGLSPSGLAKKSGLDPTTFNKSKRITNDGRE RWPSTESVAKALAATNTAIDTFVQLITDRPRVVQSVPLLGLAQAGAGGFF DDGGFPAGKGWDEIGLPSINDEHAYALEISGESMKPAYRDGDIIVVSPGT AIRRGDRVVVKTTSGEVMVKELKRRTTKIVELASLNPSHPDRTLAPADVE WIARIVWASQ >RPB_3570 transcriptional regulator, MarR family MTAPKSAVAKPPRAARKEAPAAAAADPGELAMGELSELLGYALKRAQLRV FEDFLQCVAPVQLTPAQFSVLLLLDNNPGRNQTEIANTLGILRPNFVAML DALESRGLCQRTRSPNDRRSHILILTDKGRATLARAKKLVATRHEERLSE LLGDDNRAALLAMLGKIAREF >RPB_1250 two component transcriptional regulator, LuxR family MTNDLKKRDIVLVVDDSPETLRMLTDALDGAGMTVMVALDGAAAMRIVEQ ITPDIVLLDAIMPGLDGFETCRRLKRNPAVSDVPVIFMTGLAESEHIVRG LEAGGVDYVTKPIVIVEMLARIRVHLGNARLSQSARAALDVSGRFLLAVD RVGKVLWATPQAQKLLAADGASAEGFRLDLPKPWLDWLEQVHSGLAQPKT PMKASLLRNDELRLQYMGKLGPNEFLLRLARDTSGESPKEFTTEFGLTSR ESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTAAAAI ATSASRRDS >RPB_0358 transcription activator, effector binding MNRPRLFHASLRGLASAAALMLVTAAASAQTETKPADPAPPPAATTPAPE AAPAPATPAPAPAPPATETPAPPPPAAEAPAVPPVSKVQSADPFGEEITL EPKTAVILKGKANWDNAFESLIEAFKSVTALLAKQGIKSNGNPMIVYTST DDNGFTFQAEIPVPEAPKNLPQTMSMGTTPDGKALKFVHRGSYDNMDNTY EAITNHLDEKKLEAKDTFVEEYTTDPLTTAEDKLVINVYVPMK >RPB_1515 GreA/GreB family elongation factor MRRPRRPRRMLKDKGKMVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHI AEARSHGDLSENAEYHAAKEEQSHNEGRIAELEDKLARADIIDISKLSGD TIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKISITSPLARALIGKT KGTSVEVVAPGGAKAYEIAKVEWR >RPB_0527 transcriptional regulator, LysR family MNAKPDLSDLTAFAAIAAHRSFRKAANDLGVSASTLSHIMRTLEANLGVR LLHRTTRSVAPTEIGERLLGRLNPVLRDFDAALQDLEAWRSRPSGTLRIN AAEGAVRLLLQTVVPAFFARHPEMALDLVTEARLVDIVAEGFDAGIRIGE AVPRDMVAVRFGGAIRFVAVASPGYLAAHPPPRTPDDLVHHACIRFRLKS GQLFRWEFARHGQELAVDVAGPLTLDHVELMVEAAADGLGIAYVPDRTAQ PYLSRGAVVGVLDEWCPKIPGLFLYYPGHRHVPAGLRAFIDVLRHLH >RPB_1471 Phasin 2 protein MADSNDPFSTVMPFQLPEQVRAFAEKGVSQARESYSKLRDVAETNNGAIE AVFSSASKGATDYSTKVFDFVKTNTSANFDFAHSLFGAKTLPEIMEMWTS HAKKQVEVLTSQTKELTELSQKVAAETVEPIKASASKMFTPAG >RPB_0551 transcriptional regulator, CarD family MCYIWHITNSARGFAAGKGSRQKQRTGAWRFHAQAVSQKTRKMSVSSKGA KRGAAAGRSATNRSSMSAKDTRTVKSPASKAVAAKTTAPKATASKTAASK ATVSKTKASVSQASVSKASSSKAAAAKASAAKATAKTTTAKGSAARASAP KAAALKSSKNKRSAMPSKTAKTAAAAPASKAAPAKSTAKPAAAKAPVAPP RAAPPKAAAKPEVKPVAVKPAAPPKVEEPKKVVTQRQGFKASEFVVYPAH GVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVGMRKLSDP ALVKKALETLKGRARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLFRS DSQPEQSYSERQLYEAALDRLSREIAVVQQVTETEAVKEVEGQLAKSPRR GAKAEADAEGDAEGDLDGDTDDAVTDEAA >RPB_4551 GreA/GreB family elongation factor MIQSVVCQRPPIVLRSRDAERLGQLAEAAAQRHPATADFLAGEVARAAVT PDGEPLPGIVCMDSELTFRDESTGKEKQVTLVYPPDADVEAGRISVLTPI GAALIGLSVGQSITFETPSGERRSLTVLSVSEPN >RPB_2635 Protein of unknown function DUF193 MRCPNCNSLDTQVKDSRPTEDSSVIRRRRVCIACNFRFTTFERVQLRELT VIKRNGRRVPFDRDKLVRSLQISLRKRPVEPERVEQMVSAIVRELESGGE ADISSETIGEIVMDHLRKLDDVAYVRFASVYRNFREAKDFEAVLGELSGE EEARPALVRK >RPB_2374 two component transcriptional regulator, winged helix family MADQPQLPHILVVDDHREIREAVTKYLERNGMRASAASNTVEMDAQLKAG RFDLIILDVMMPGEDGLSAARRLSTGGGPPVLMLSALSDETDRVVGLEIG ADDYLAKPFSPRELLARIKAILRRSERREPLAGTLGGRKLGFAGWLLDTD TRDLVRDADRAEKIALTTAEFKLLVAFLERPRFVLTREQLLDITSGRSAD VFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAADVRELP >RPB_2746 putative transcriptional regulator MASLAEKRIVEFEPKVEHAEVSAEQQPQTRPEELRLLEALLFASTEPLEQ SALAKRMPDGVDVKAALAQLQADYAHRGVNLVRIASKWTFRTAGDLAWLM TRETTETRKLSRAAIEMLAIIAYHQPITRAEIEDIRGVVTSKGTLDVLLE TGWIRPRGRRKTPGRPLTFGTTESFLSQFSLEALSDLPGLEELKGSGLLD TRLPTGFNVPTPSDDPTLREDEDPLESGDLELALAPVADPETDEVGAAAQ AAEAETAWTATVEAEVGESATGLAETPEDQPAEAEVGFAEAYEDGSDATD TGATDEATLETLEHDEFDDETGASDAAETETAELDTAEADEAEAHDDNGD GKGGHEPN >RPB_4694 two component transcriptional regulator, winged helix family MRVLVAEDDSRIAADLARGLTEAGYIAECVADGEEAWFRGDTEDYAAIIL DLGLPRLDGLTILKRWREAGRRTPVLILTARGSWAERVDGIDAGADDYLP KPFQMEELLARLRSIVRRSAGHASSVVCIGDLTLDERQMQVSLRGQKVAL SPLEYRLASYLVLHRGRVVSQFELNENIYGQDDAHDSNAIEVLVGRVRKK LGPELIETRRGFGYIVPGDGT >RPB_2973 Negative transcriptional regulator MYVPPPFKSDRSQCLAFAAARGFGLVCAHDGRKPVASPLPFAVGYSSNGT PLLSFHVARGNPLAALADSRTSWLMAVSGPGAYVSADWYASPDQVPTWLY QSVHLTGAAAVMSEAELDSHLDEVSAVFESSLAPKRPWTAAKMTAGRRSA MKKAIVGVMMRVDLVEGSFKLNQHKSDADHVAVAIALARQGDPAAQEIAA QMIALRPQLDYIEPATAFAPAL >RPB_3669 transcriptional regulator, TetR family MKDAPRRPTKRSATSVTPGPAPAARGRAKPADATSDPSRNAAASTRALRA AERRAAIVDAALDEFIARGFAATRLEDVAKSAGVAKGTIYLHFADKEALF QELLRAAMLPLIEKLDAPPLPGVSARAMFEMFAEVFVREVTQTKRADLLR LMITEGPRFPSLAEFHYREVVVRGLAAMRRVIAYGIERGEIRNDTLLQFP QLIMAPAMLTVIWQGLFNRYSPLDSLGLLRSHIAIIFNEGKAT >RPB_4174 transcriptional regulator, MarR family MADINFNDDLHGDGAAIALPRPADSSVAAPRWDIIELLFFAYRDFVGDAD HVLEAFGFGRAHHRVVHFVCRYPGLTVADLLDVLRITKQSLGRVLKQLLD EGYIVQKAGDNDRRQRLLFATAKGEALVVKLAGLQTDRIARALRGFSPGE AEAVRKFLRAMIDCDDPDKVLQTILQSDGAVAKDVT >RPB_3442 two component transcriptional regulator, winged helix family MVPETVKLASESESHMRLLIIEDDRESADYLVKAFREVGHVADLASDGEE GLALADSGDYDVLVIDRMLPKRDGLSVIGTLRDKGNRTPALILSALGQVD DRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHGGPAEETSYRVGDLEL DRLSHRVTRGSEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFD PQTNVIDVHISRLRGKIDKGFDRPLLHTIRGAGYMIRDGIR >RPB_4359 two component transcriptional regulator, winged helix family MRILVVEDDAMIADGIRAGLTLAGASIDCVANCEDAAAALAANTFSAVVL DVMLPDGSGLDLLRRLRAGGDATPVLLLTALDEVGDRIAGLDSGADDHLG KPFDLDELGARLRAIIRRRDGRAATCLEHGAIRLFPAESNATLDGAPVPL SRREFAVLHALMERPGVIRSRGELEERLYGWGDEVDSNAVEVHIHNLRAK LGRAAIETVRGVGYRIKPR >RPB_3829 transcriptional regulator, LysR family MVIRMPRPLLNLDLDLVRAFVAIATLGNFTRAAESLRRQQSTVSLQLQRL EDALGRKLLERNPRSVRLTPEGEVFLAHARRLLDVNDELVARVTEPALHG AVRLGTPEDFATRHLPEVLSRFARAYPAVALEVTCDLTLHVIDGFRKGSF DLALIKRERVGEAAGIRVWREPLVWVAGEAAPQQRDGPLPLVVSPSPCVY RKRATEALDKARRPWRIAYTCGSLAGSLAAVRGGLGVTVLPKDMVPEDLH VIDGGPLPSLRDTEIALLQRERLSLPAQRLKEHIVRSLG >RPB_1862 conserved hypothetical protein MAAFDDIIHQPLRLKIMAALNALPDAQGMEFARLKKLTGATDGNLGAHIE TLSKAGYVAVDKTFVGKKPQTTVTASAAGRAAFARHVATLREIIAGAVPG GG >RPB_0905 hypothetical protein MSSRRRRHDNDATHQADDRERRAKALEFVIPGRAQREPGIPKFGARAAVA EHVWIPGSLAARAPRNDDLRDFVERVSIWRINQTNTDQH >RPB_2212 sigma-24 (FecI-like) MTEAGWAALQQRLLLRYDDFKRRLTRYLGSSELAGDALHDTWLRLQRGGQ IDAVRSPDTYLLRIAINMGRDHLRAENRLVSTSDAATLLGISDDAPDAER DAEGRSELRLLTAIMAELPPRQKAILIAARVEGLPRGEIARRYGVSVRYV HRELQAAHDYCAERLEKMTADLYRLAPRETSLPERLSSPLPGGPHILAAR DD >RPB_2380 transcriptional regulator, XRE family MVRAEVTTGEQPRLHRLLTSKVDHRPMVNQLQRLRLKADGRIVELRDGQE FPLSPAAPEPATPAVRDLRRRARLTQTEFADRLGVPVDTIRNWEQGKRLP RGPARALLSVIAHAPDTVFAALAGAGAADSTAS >RPB_0822 transcriptional regulator, LysR family MDKSAITIERIRTFVRIAERGSLSAVARDLNVGQSTVTRQLQELEAAIGA PLLSRTTRRVTLTEEGSRYYARCVQILRLLEQAGDEALGASGAQAGTIRI SCTASFGILHVCRLIFAFQDRYPEIGVDLGLTDHRIDLVREGVDLALRLA PLTESSMKLRTLGHSQRLLVASPDYLSAHGRPTSPHDLSGHQGVRMMNVA GSDMLVLQGPGEETHRVPFGGKLRVDHGLAAREAMIAGRGIAATHRWLVD DLLAAGRLEVILPEYRLAAVPLNLLIVPERAGIARVRLLIDFLVEQIRTV PGIA >RPB_3138 transcriptional regulator, LysR family MTRRRLPSLIALRAFESVGRTGSVRAAGDELAVSHTVVSRHLQNLQKFLG VALVRGEGRGVILTEAGLSFHQQISQAFDIIARATMNARPSSLPTLNIWC IPGIANRLLLSRLPELTGPPRNWEVNLQPTLTHPDLVRAEADAEIVYADV IDSRGSLMAEILVRPRVFPVASPAYLARYPAIGSLDDLSKIALIHEESTE QWTRWFELAGLDDLPPLRGQRLWHAHLAIEAARLGQGVALGNEVLVEEDL RSGALVEVLNSSVYMETYQLLALKERWDDPEIVALRNWLRRVLAGH >RPB_1653 transcriptional regulator, GntR family MRTMSPPVGLPALAATDLVGQVARALTLAILQGRLPPGSKVVEAGIAREL GVSRAPVREAARLLESQGLLVASPRRGFFVRQFAADDIDDIFDLRLCVER HAGVLAARKLTPATRDALRRQIDVLHQTANLDDPARQVEEDYRFHRLICE IAGNRRLLRLFDDLASELRMVIGLIGRLYDDPHEIARTHEPVLAAIEQGH PERIVAHIDYHIGHAWREVAKLVREIPPATAGGKIRSV >RPB_0920 hypothetical protein MTTPQPGAREAFAFLRSVCRNFPERLMLGEAIRNQWPAHAIEAAARQYKG RGDLKYRLAIQDASKRRYYSPEERAADYAALHERQAELEARSAMKATKAT RPSVPPEFKAARAACRSVLDCDRLKAALEAGWLPEQLNYVARQLSKKASR VAFRETPAAYRHAFEFINGADPAHFTFLPLSLQSAAHEPHANA >RPB_3926 putative transcriptional regulator MKVSKLKKFNAAEHLRTPEARAEYLSIVLADGDPTEVRDALNLVARAQGM SAVAKAAGVTREGLYKTLGENGNPEFATVLRVFGAMGIRLTAEPAGAKPR KKAVA >RPB_1907 transcriptional regulator, GntR family MNEKIADRSMSQTVRAQLALRDMVLSGQLRAGERISELQAVDITGVSRTP VRMALVRLEDEGLLQAIPSGGFMVKAFSERDILDSIELRGTMEGLAARLA AERGVSARQLEPLKECLGDIDQLVQQDPVSVDAFSSYVALNARFHALLNE LSGSSPVMRQIDRVAALPFASPSAFVMAQSALPEAHQILVIAQDHHRTVV DAIENREGARAEAVMREHARLAVRNLRLALRNRTHLDLLPALALATASVD K >RPB_2850 transcription-repair coupling factor MKAPSRSPAELLAPGKALTFANVAEGAEGLIVSDLARAIAARPKPPAVSL AVICRDGPRMQQLERSLEFFAPDVGVMQFPAWDCQPYDRVSPHAGILAQR VTTLARLSRLAGSDKPLIVLTTVNAAVQRVPAREVIAAQALSVAPGNIVP MDSIAAWLEHNGYSRASTVREPGEYAVRGGILDLFPAGLEQPVRFDFFGD QLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAFGA PDRDDQLYTSISEGRRHPGMEHWLPLFQERMDALFDYLPGTPVAIEPQSE DAARERFKQIADYYDARREAMEHPGSGAIYKPLPPDQLYLTEAEWTARLQ GISLARLTPFDVPDDGSSVIDAGARAGRNFAPERADTSVNVFQALVAHVQ ALQAARKKVVIALWSEGSRDRMASMLKDHKLVHLTSVNSWRTVQATPRNE AMLAVVGLESGFETDAFAVITEQDVLGDRLVRQRKSAKKLDNFISEVTSL SSGDIVVHVEHGIGRFIGLQTLEVGGAPHDCVELHYANDTKLFLPVENIE LLSRYGSDGTSVELDRLGGGGWQARKAKLKNRIRQIAGELIKVAAERHLR EAPKLHVEPHLYDEFCARFPYEETEDQLAAINAALGDLERGMPMDRLVCG DVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPV NVGQASRLVSPKELTQVKKGLAEGQIDIVVGTHALLGKGIKFKDLGLVVV DEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDLSIIAS PPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIDDLAEVKDF LDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDAKYDILLSTTIVESGLDIP NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPQHNITAQAERR LKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQML EEAITNLKAGVSEPVADRWSPQITVGMPVLIPEDFVKDLSVRLSLYRRLA DLDSDEEIENFAAELRDRFGVLPDEVRYLFKVAAIKAYCRHANVEKVDAG PKGVVITFRDNAFAHPDRLVTFIRRHGDAAKVRPDMKVVFFQVWKTPEER LVGTTEIMRQLAELAEAKKAA >RPB_3555 sigma-24 (FecI-like) MRGRDDEWTDLMLSANAGDSVAYQRLLKAVTPVLRAGARRGLARAGQPID QSEDIVQEILLAVHLKRHTWDPEAPFAPWLFAIARNKLIDALRRRGRRVF VNIDDFAETIPSEAAPETLPSGEIARHLEALPQRQREVLQSIAVDSASIK DTANRLSMSEGAVRVALHRGLAALAAKMRSV >RPB_0393 transcription termination factor Rho MREMKLSDLKAKTPAELVSFAEELGVENASTMRKQELMFACLKQLSAKET DIIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTI EGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDERFRL EIDDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITA NHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVI EKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDR KVSDKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAID FLLDKLRNTKNNAEFFESMNT >RPB_3277 RNA binding S1 MPSIRRSAGASSTHRAHCFERPPVPKIASIIAAELAVREEQVQAAIDLLD GGSTVPFIARYRKEATGMLDDVQLRALEERLGYLREMDARRIAIIDSIKQ QGKLTPEIEKALLAADTKARLEDIYLPFKEKRRTKAQIAREAGLEPLAEM LLTNPDKHPETEAAAFVKTDGEHPVADVKAALEGARAILVERFSEHADLT GSLREAIWSRGQLKASVRTGKKTEGAKFADYFDFSEPYQKLPSHRILALL RGEKEEILTLDFGDGEDPDSKEPTQYENRIAATFGIARKGRPGDAFLSDC VRWAWRTRIKTGLALDTRMRLWQQAEKEAVRVFAANLRDLLLAAPAGGRA TLGLDPGFRTGVKVAVIDQTGKFVDHTTIYPHEPARKWNESMLELAQLCI KHRIELVAIGNGTASRETEKLVTDLMKLKPELKLTKAIVSEAGASVYSAS EFASKEFPDLDVSIRGAVSIARRLQDPLGELVKVPPQSIGVGQYQHDLNQ HVLSRALDATVEDCVNAVGVDLNTASAPLLERVSGIGETLAANIVAHRDG NGPFPSRAKLKEVPRLGPKAFEQCAGFLRIRDGENPLDASGVHPEAYPLV KKILAATKSDIKAIIGQTKTLQSLQPASFADDKFGIPTVTDILKELEKPG RDPRPEFKTATFQEGVEKITDLKPGMILEATVTNVAAFGAFADIGVHQDG LIHISAMSERRINDPREVVKPGQVVKVKVLEVDVPRNRIGLTLRLSDPIP APGERRKDGGGNAKLVDRYRPKPEPKSTGGGAFAAALAKAAENSKGRSK >RPB_0418 transcriptional regulator, LuxR family MLAGESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAALP APGAGLAELTLANGWPRGWFELYVGRNYMAVDPVPRHGAATVQPFEWSDA PYDRKRDRAAHQVMTDAAEFGLVRGYCIPLHYDDGGAMISMAGEAPDLDP TAKGAMQLIGVYAHNRLRSLNRPKPQRRLLTSRECEILSWAAQGKTAWEI SMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSLGLIRL >RPB_0879 transcriptional regulator, LysR family MNLKQLEYFMRVAELGSFSKAAMMLDIAQPALSRQVRGLETELNQQLFLR NGRGVALTEAGRRLFDHSVGIMQMVAHAREDLGASRDAPVGRVTIGLPPS IGRQLTLPLIDRFKRELPAARLAIVEGLSSHIVEWVTTGRADVGLVYNPE AQSGIDITPLLQEPLGLVSRAPKGKRGQPAPPLPFKELSAYPLIVPERVH AMRRLLETQAALAGVKLDIAWEVSSVPSIIELVCAGYGHAVLTASGVAAS PRAAELSSRRLIDPAATSALCLAVSATRRPTPLAQYTMRLLTELARSLPN >RPB_1500 transcriptional regulator, LysR family MPKYITNELVASLISRIELMAEPTLKQIRMFLAVARHRSFRVAGDRVSAS QSSISIQIKQLEDRVGLALFDRTTRVVKLTPAGSELLADFERLAAMADEV RVKCAQLAAGRTGQLRIGVLPSIAEHLLPEVIAEFSRELPGVHFEIFEAV EQELIAAVKVGRCDLGLTSARMLERGMTFEGLFSDDLFAVMLSSHPLASL DEIPIAALAERPLILTKWGTSLRLAASQAFEDEGIAIVPAYEVTNMATAL GFAAKGLGVALLPASAVRNMQNVATVARPLRGQAGSRMMGILQLEGAVSY PLQQRFIALLRSVVATAASRQVLAPES >RPB_0197 sigma 32 (RpoH) MTSAFSSSSLAPAHSDAAVFDEKSYMRAIGRYPVLEPDEEARLWQRWLQH RDKAAADALITSHLRLAAKLARDFRRYGFPLGDLIAEANLGLMMALDRFD PERGARFSTCAVWWIRSAIYDHIIRSWSLVRIGRTPAQKKLFFRLRGEIR RLQPDHHGTLTKELAEQISATLDVPLREVIEMEQRLSGDRSLNTPLSDLD ESGEWQDLIADDAPNAEAVLAGHDELDHQRRALQDALVQLDARERYIFSA RHLGERPASFETIGQSLSISAERVRQIEARAFAKVANSARRTCGTARPAA RVTSNRKTTALTAPPNWIGHNAAAVHASV >RPB_3426 transcriptional regulator, GntR family MTARARIRPIDVVAEPDLAMPPLSPEVSYKAKAYQALKQAILRMDIYTAP EPVMLDERALSDKLGVSRTPIREAIAMLEQDGLVKAVPRRGIMVVRRTKA EIVDMIRAWAALESMAARLITTMARKRDITALRDVFQAFGPDHLPQDHIE EYSRANIVFHQALISLSESQVLVDMTDDILIHVRGYRQLTIGRKERIAAS LPEHLAMIEAMEARDTELAEKLARDHTLRLAAYVEAHGQELFA >RPB_3128 sigma-24 (FecI-like) MIESAWVTLRRRLVESYDELRILLTRRLGSEDLARETLHETWLRLDRVDD VSVLRNPDAYLARVALNLATDRQRLETRRARKSDVNAILDDIVEDAPGQA ERLESRRDLAIFEEAIGELSERRRDILIAARLDQEPHQKIADRLGISKRM VQIELKYALQYCKSRLERK >RPB_2487 cold-shock DNA-binding domain protein MQKGTVKWFNPTKGYGFIRPTSGDKDVFVHISAVERAGLSTLNENQAIEY DLVENRGKTSAENLKLT >RPB_0007 transcriptional regulator, AsnC family MSDADVPVAETVRRLDAIDRKILTVLQQDASLSVAEIGDRVGLSSTPCWK RIQRLEADGVITRRVALVDQDKIGLGLSVFVSIESGDHSEAWLKTFADAV SAMPEVIEFYRMAGDVDYMLRVVVADMRAYDVFYKRLISTVPLKNVTSRF AMEKIKSVTALPVPPMSAA >RPB_2693 putative transcriptional regulator MQVDTPSISARDCGLDTTFQVLRGKWKPFILHVLLRGPKRFGELKRAVRH ASEKVLTQQLRELEADGLVKRTDYKEVPPRVDYALSPIGETLAHALEPLR KWGDDNARLFDGVVTKRPRRDNADSTSKPAFDNLTTAVTTINTPMPFRID EKTLIACLKGEVSDPRWRVYVQALFDEVDVSVIHKLVLDRLVTFNDLSKA IDIWRVRESENERWVREMASFEVARPDAESPGRAR >RPB_1493 transcriptional regulator, GntR family MQSDEDRLMWKELLGRSAKEGVQLQAQLRNAFVDAIVDGNLPAGRRVPSS RELAALAGVSRTTASLVLEKLAADSFLEARPRDGFYVSSALKRRQVTFGR AVGNADQPDWAARLVHAEVGYPWQERPRGWESCKYRFVYGEVNAQTFPFT DWRDASRSALTSPAIQHWGQDSGGEDSRPLIEQIINKILPRRGIAAAADQ VMLTLGTQHGLYLIAQTLLGPGLKVGVEEPGYMDARFIFLRSGADLLSIP IDAFGMTIDKRSLDCNYLYCTPSHQAPTGVTMSTERRLSLLNQAIVQDQI IIEDDYEPELKYDGAAAAALKAMDRSGRVIYLSSLSKLVCPGLRIGYLVG PETLIAELKSLRRLMLRQLPGNNLASAAQFIRQGHYDRLMTEMRRSLETK AKLIVDTLRRELPIAEYEAPTGGSAIWMRIPGCRSPSKLRAACFDAGVLI DPVEPYFALAPKETWVRLNFASMPRQLVEAGTVAFARTVSKLIRSGG >RPB_2639 NusB antitermination factor MADSKKPAIKKPVPKGDRKANRRGAARLAAVQALYQMDIGGAGINETFAE FESHWIGNEVEGDQYLPAEAAFFRDVVSGVVRDQKKLDPLIDDALAKGWP LARIDAILRAVMRAGAYELEHRKDIPARVVVSEYVDVAHAFVEKDETGMV NAVLDQIARQFREDEFTRG >RPB_2939 Silent information regulator protein Sir2 MIAPDLRSGVERLGDMIAGASVIVPFTGAGISTESGIPDFRSPGGLWTRN RPIPFEEFVARQDARDEAWRRRFAMDDTFAAAQPGRGHRALAALYKAGKV PAIITQNIDNLHQASGFAAGDVVELHGNTTYARCIGCGKRHELDWVRQWF RRAGHAPHCTACDEPVKTATISFGQAMPVDEMRYASQLAQNCDLFLVIGS SLVVWPAAGIPMLAKESGAKLVIINNEPTEQDEIADLVIRHDIGETLGPF VGN >RPB_0690 transcriptional regulator, LysR family MNETNESLDLNLLRVFLAIWDLRSLTAAGDRLGLTQPAISHALRRLRDRF NDPLFVRAANRMLPTDAAVRLHEPLDQAFAIINRALKERVAFDPQVTQRT FRIAMSDIAEVYSLPQLMTKLTRIAPLARIDVVPLAPDAVVGAMRSGEVD LAIGYVKNGEEDCSSIDIFNDRFVCIVRAGHPIGRTGLRKSNCAGLRFFY ARITSPVHHQPIEQWFSDRGAGPQIAVRGHFMVAPEIVRHSDLAAIFPES LALRLHRAKDFRLLDLPFDLPLIEVKVHSHSRFASDMGIKWMCETAAKIL KEDG >RPB_0449 transcriptional regulator, AsnC family MSLDAIDLKILAELQADARIPNLTLAERVGLSPSPCSRRVRLLEQAGVVA GYRALIDRAAVGLSVTAFAGIRVERHSRDNAEAFIAAVRDMPEVIACHLV SGDADFLLEVVVPDIAAYEATVLRGLLALPTVRDIRTSFAMRSDKLDGPL PLPKPA >RPB_4173 two component transcriptional regulator, winged helix family MIQLATLAKKPVRPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAQS GRDARAKLAGLNFDLLILDVMMPGETGFDLARFIRTESDVPIVMLTARHE AEARIEGLQLGADDYVAKPFEPRELLLRICNILKRTSPAPASKAETIAFG PYVFHIDRGELRQGDETIHLTDRERDMLRVLAAAPGETVPRGELTGGGGN ANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRLVAAP >RPB_3642 transcriptional regulator, TetR family MARTRANDYDQKRRGILSRSAKLFAEHGYTGTSITMIAEACGVSKALMYH YYRSKDAVLFDLLADHLQHLVGVVESAARSEGDAGERLFAIAAALLEAYR GADAEHQVQISSLKLLPGEQQEELKALERSLVSLMSDAISAAIPATAAKP HLLKPLTMSLFGMLNWHYLWFREGKGLNRQTYAKMVTTLMVAGAEQAMDA VEDDDAEPGRTTSRRKNERPAVARRAG >RPB_1793 DEAD/DEAH box helicase MERTNLLTSFQDFGLADPISRALQEENYTVPTPIQAQTIPLALAGRDVVG IAQTGTGKTASFALPILHRILENRIKPQPKTCRVLVLSPTRELSGQILDS FNAYGRHIRLSATLAIGGVPMGRQVRSLMQGVEVLVATPGRLLDLVQSNA LRLGQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDI ADLAEQMLRDPARVAVTPVASTVERINQRVIHLDHSAKPAMLATILQQDG VNQALVFTRTKHGADKVVKGLQRAGITADAIHGNKSQNYRERVLAAFRTG ELRTLVATDIAARGIDVDGVSHVVNFDLPNIPETYVHRIGRTARAGAEGT AISLCAGGEETGYLRDIEKLIRIALPKEDHRTPGAKPAPSTAPQRGGQRN GQQRNGQQRSGGQRNGAAPHAARGDAAPGSNDPRRPRRAGGPNAGRNPDA ARHEPAVRPQHGGQAEGLQGVAFLQRKNDRPAKTTNQRPQR >RPB_2043 GCN5-related N-acetyltransferase MTDKPLHTLRPLERADLEKIGWMEAEIAKISFPDDPITDVGFYVKKLEKL FGDKEAATFVAERDGEIVGWSYVSIRRNFITKQPYGDYHSIYIDPSQRGS GLSNLLMNSVFDWCKAQKLDHVVFRTRATNEPMKGVLARVGFVPTQIYLE KPLKD >RPB_0368 conserved hypothetical protein MIAASNPERLVSPMNTEVDAGVVLTKATVRAAERLGLSQKVLSNVIGLSE SVISRMKSGDYVLDRGKAFELAALFVRLYRSLDAIVAGDETAARKWIKAE NLALRGTPVELIQKVQGLFHVVQYLDTRRAPV >RPB_0937 transcriptional regulator, LysR family MTVARSAQQRRSPRRTAEHVAKTQRKIRYDWNDVVYFLEVARQRSLVRAA AKLKVDHTTVSRRIRELERSLNSTLFKRSKSGFSLTEIGMRLLQYAEGME SQANAIVEAIGTDTADAGGAVRIAAMEGIGSFYLTPCIVDFNKIYPSIQI ELITDTRLLDLSRREADIFVSFFRPHGKRLSIKKVGEFRISLYASNRYFE GRSEPRTQKELEDHAFIDFIEDHIYSKENRWLSDVLRPPHTIFRSTSLVA QSIAVSAGQGIAMLPTYVASGRSELRPVMPELFTTRDIWLSVHEDLLHIA RIKAVITFLEERIEADRTFLNSVKNRPGRRRP >RPB_0303 transcriptional regulator, TetR family MVQAAPHPTIDSPAPDVRMSPRDRLIESARVLFCRYGINSVGVDAIIENA GTAKTTLYKLFGSKDGLVEAVLQREGQSWRTWFIDEIDGPGGSARERLAR IGPALKGWFSRPDFYGCPFINAVGESDKADDRMRSLAIAHKTIVHDRLTA LCTEAEIAEPAQVAHTLGLVIDGAIVMALVTRDAGAADVAGRACAAILPA >RPB_1921 transcriptional regulator, AbrB family MSSTVTIKGQVTLPKKVRDTAGIKPGDKVEIRNTASGGIYIGKSGSEREY LTKLQSIAKRYPIRGNTDEIMRELRGDPADDYKK >RPB_3340 regulatory protein GntR, HTH:GntR-like MATPLNSETTHTVRRTLEFVQHHRLAKGDRLPSERELSERFGVARSSVRE ALAVLDAMRITERKPKSGIFLRNAVEDGGLDALVLQADLGLAFDPQVTRD VTEARIICEEQALRIACRRRTDADLAKLHRLLDGYAGLVDADRNPADADV DFHLALVAASQNRILVRTLTPLMLMSTNWRRRYFDSAAIRRRSLDDHRAF VAAIEARDEAATSALVQRHVQTAAADVRALAEQGGATATDTPSKSDTRAS DAPT >RPB_1805 transcriptional regulator, TetR family MSWRKEERRAERGYHHGNLKEALLQAALGLIAEKGPAGFTFADAARMAGV SPAAPYRHFRDREELLSNIAYRGFELFEQVLAKAWDDGRPDTLTAFKRVG SAYLAFARSEPAYYSAMFESGVPVDANPLLMTASERAFNVIRAAAERLAA LTPPGVARPPALMMALHIWSMSHGIASLFARGDAARRKLPMAAEELLEAG VLIYLRGLGFPADLRSQPEKPAEPKRSGPWGAAPQ >RPB_2176 cold-shock DNA-binding domain protein MPTGTVKWFNGQKGFGFIAPNDGGNDVFVHISAVERAGLSGLAEGQKVNF ELKTDKMRGKTSAENLELV >RPB_2987 TfoX-like MDREFLIDLFSPFGPVTIRRMFSGFGISADGVNFALVIQGAIYLRADAET IPRFQAEGTAPFHYTTRLRTVTVGSYWRLPDRLLDDPDELAQWARASLAA AERAALTKTRKPKSKPRAAASAAKPKRVRQRGA >RPB_3438 transcriptional regulator, AraC family MASLPRLFYVTSSLDEATALATWSAVISPLFEPRPCGPSKKTPTGSAYGI IIGDLIIAKVAFNAQDFVRDEPRIAATPDHLLLHLYVTGGFNGVVTRQQT AIGPGKVALIDLAHPIATRAFASSTVCLIVPRKLLGGLPLDTLKPRLDPL RNDLLAAHLRSLQERSAQLTETDVADTVADTVGFLRRLLAPAQDESPAAE QRTDETILALLEALIRDNLASPDLSPDWLAQRLDVSRASLYRLFADRGGI MRYVQERRLLAVQAALSDPIETRRLSRLASDLGFKSEAHFSRSFRARFGV TASAFRKAQLDASAAIQLTSPAVVQQWWTAVARSPPARGLAPADERGAVL PL >RPB_0210 transcriptional regulator, AraC family MSSHSLQIAGERVCARHAAGVSSASSMGRCQQPDEVWSGHLRNRERSNFD LKKMAALIRALTAEGGATPGIVSGLRPPAASGGETVLNFRDRSEGRPGPG DPPCTDDDPLVIRLSEALAAAECDSSEFADLYADAIRVVTAVRKLSMQPP AALIEDRKPTGGAVLPKWRLKLVANYVSEHLAEKVTLADMAAAARLSRMH FAALFLRATGLRPHEYLLKRRIAAAQELLQTGDLPIVQVAMQVGFQTQAH FTTVFKRITGHTPAKWRQTMRPHD >RPB_4389 transcriptional regulator, LysR family MLRASLQDLEAVAAIARRGSFRAAALDLGVSTTALSNAIGKLEASLGIRL FNRTTRSVSLTDTGQVFLKQVGPALQDIRAAVETARSRQATPSGSLRINA FAMAAREILSPLILEFLRRYPDVHVDLVTEGRLVDIVAEGFDLGVRVADL VPSDMIAVSLGRPQRYAVAGSPRYFAEHGKPQGPSDLVDHRCIRARLPNG ALLRWQFEKDGRAVQIDVDGPITLDEASLARTAALEGIGIGFFMEQDVVG DIEAGRLIRVLEDWTPPFAGLCLYYPGRRNPSAAMKAFISLARAWAGNAT ADRPRRSRPRAPRK >RPB_0781 two component transcriptional regulator, winged helix family MGARILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLV VLDWMLPGLSGIELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGAD DYIVKPFSVPELLARVKGLLRRAAPERLATVLTYGDLELDRDKRRVARSG RPIDLGPTEYRLLEFFLEHPGRVFSREQLLDGVWGRDIYIDERTVDVHIG RLRKLLNPGREQDPIRTVRGAGYALDDRFAKVE >RPB_0754 transcriptional regulator, IclR family MLADSAGDAAFATTLAKGLIVLEAFDAGTPLLGNMEIAVRTGIPRPTVAR LTHTLAELGYLRFDPALSKYGVGPRALRMAHPLLADMPFRQLARPLMQDL AASVRGTVSIGLLDGPSVIYVETARSGDVGPHSPDIGMPIPVVRTAMGRA AASLLPPDEAELLARRIAAADRSAWERDGELYRAGLAQCAQRGFCTCFGD YMPSIHAVAAPLFRSSRLKRTFAINCGIPEFRLQPGQLEAEIGPRIRALA AAIRAMFHEADAAAAPRLRQSRNAR >RPB_0179 DEAD/DEAH box helicase MPFSTTLPPLARALAERHYSEATPVQSAVLAPDAAGRDLLVSAQTGSGKT VAYGLAIAPDLLGEAERFEPAAAPLALIVAPTRELALQVHRELGWLYGAT GARVVSCVGGMDPRREQRELAEGAHIVVGTPGRLCDHLRRNRLDVSQLKA VVLDEADEMLDLGFREDMEFILKTTPDSRRTLLFSATLPRGIIALAKTYQ HNAFRVEVAGREGGHADIEYRAIRIAPNDVEHAVVNTLRYVESPTAIVFC ATRSGVTHLQTALLERGFSVVALSGELTQNERTNALNALRDGRARVCVAT DVAARGIDLPNLGLVIHADLPNDPEVMQHRSGRTGRAGKKGISVLLVPPA RRRRAESLLGLAGIEAIWGTAPQADEIRVLDQQRMMQDALFTEETTPDDQ ALAQALLAERSAEEIAVALARLYRARLPAPEDILDPGERPARGRDDRAPA KGARAPREERDYGPRDPGSRARPGKAGQKHAITDGVWFRAAIGKRKNAEA RWLLPMICRRGGIDRQAIGAIRILDTTTEFEIAAAAAVDFAAQIKRPDKD DNIRIEPLIGAKPIEAGAERALSKPHGGQLSERETRRSKRPDSWSPQIEP LADPRPPRAGKDAGFKDAGFKKKQVFKKDGFKPEGFKQDGLKTKKSRDDK PAYVSKARRADPSAPNPGFKKKPKKKFRD >RPB_4502 Protein of unknown function DUF179 MVTKSKRPKSGDRSGREPGNAGPIEQGDYLDGQLLIAMPVMEDERFARSV IYICAHSSEGAMGIIVNRPAGSIDFPELLVQLDIVEKPEQIKLPDHAESM KVLRGGPVETGRGFVLHSSDFFIKDATLPIDDGISLTATVDILRAIASGA GPKHAILALGYAGWAPGQLETEIQDNGWLHCDADADLVFGNDIEEKYDRA LHKLGIEPGMLSAEAGHA >RPB_4378 transcriptional regulator, ArsR family MTSILDPDIETEFRDGAEYSPELDMLMRRARKASSFLKAVSHENRLLLLC LLAERERSVSELENILSLRQSAVSQQLARLRYDGMVDTRRDGKTIYYSLA NDDVRRVISVIYDIFCSSARGGEQK >RPB_3595 transcriptional regulator, LysR family MTLEQLRIFIAVAEQQHMTRAASGLNLTQSATSAAIAALESRYDVRLFDR VGRGIVLTQAGRDFLEEARAVVARARAAAQALDDIAGLKRGALSIAASQT VGNYWLPPRLLAFQRNYPGIALQVTIANTEQVARAVRDGHADLGLVEGEI DDPLLTNDRIDGDSLAIVVGKRHPWIGTTQIAENKLTTTGWILRERGSGT RSMFEAALRDIGVDPSSLDVKLELPSNEAIRAAVESSDYATAISDLVVAP SLAAGTLHRVRFELPRRSFCVLRHREHSGGQAEKAMLAALYAE >RPB_0501 transcriptional regulator, MarR family MKKHIKDPIAGAAGPERDLTRRFASITTNVAVFLDEIRHYRAKNLGISGP QFAILMAVMDLDEGEGVSVRHVAKAMHVDSSFITTQSKLLEKKALVRRRP DPTDARVVKLSLSDKAYKSIASFAAEEQSLNDFIFEGLSNESLEDLVQQL TALKLRLEKACLKIAGGF >RPB_2938 cold-shock DNA-binding domain protein MGSDGFESKKPGVMATGGAGRSGAVEFAPRDEFTHRDGVGAAFAGIGETA NLVEIGGVIKWFDASKGYGFIVPDNGAADVLLHVTVLRRDGYQTAYEGAR IVVECVQRAKGYQAFRVVSMDESTAIHPAQMLPPRTHVSVTPTSGLERAQ VKWFNRLRGFGFLTCGEGTPDIFVHMETLRRYGMTELRPGQYVLVRFGPG SKGMMAAEIQPENGAPGLSSH >RPB_3305 transcriptional regulator, TetR family MVMGRPREFDVDKALDLALHVFWRKGYEGTSMSDLTEAMGITKPSLYAAF GNKEDLFRKAFDRYVDGPGGYFQAGLLQPTARKVVEHILYGAVEAMTDPN NPGCLAVQGALCCGEAAETIKQELTARRAKGEQELCERFDRAIADGDLPA ESNAGDLARYVSAILQGMAVQAAGAATPEQLRKLADMALRGWPPA >RPB_4482 transcriptional regulator, XRE family MAIVVNLDVMLARRKMRSKELAERIGITEQNVSLLKSGKVKGIRFDTLER ICAALDCQPGDILEFVPDPSEASTSETKPAPA >RPB_1513 transcriptional regulator, AsnC family MRGTICRPDRNTGFRRVSKSLDQIDLKILQEIQEDGRITNVELAKRVGIS PPPCLRRVRTLEEEGYIQGYRGLLDPALLGFDVTVFASVHLASQAEADLR GFEEFVRNEPLVRECWMLSGEVDFILKCVAPDMATFQNFVAHLTAAPHVR NVRTSLVLRNSKYAPAVPLELKAAAT >RPB_4608 transcriptional regulator, TetR family MDSDTKDRLTRSDWLAHGLRTLARHGANALKVGDLAAGLEVSRGSFYWHF RDATDFRLQLLQLWQERATDQVFRDIDAAIVGPARLTHLMKLAFNEDRSL DRAIRELAATDPTAAAMVASVDARRIDYLSKLMIESGVEGRRALPRAEFL YWAYIGQTAVLNPAHTVVTESDIDDLSALFTR >RPB_1616 putative transcriptional regulator, AsnC family MVPFFVQFKCELGQSYAVANAIAEAEIASEIYSTAGDYDLLVKFYVDRAT DIGHFVNEKVQVIPGIKDTHTIITFKAFGPK >RPB_2046 transcriptional regulator, AraC family MNQRNHYSTAALTGSESIAAWRQAMAEVYYRLDIQARHDDRVVGELIDVQ LGSLGLSNFKADAQRVIRRKESAKIDGSEDFVFLFPIRKGLQYEQRGRSG LAMPGTVFLLNSAENYVIDVPDGSENITIKVDRRLLIDRVKGIDGLCASM NIANSQLVPVVTTLGAQLLNLPPGEHADRLQQSVIDLICLMLDLRESAQD KTFIRQTLASSLYHRIDAYLQRNLHDCDLSPDHAAREHKISVRYLHKVFH FHGTSFGQRLLELRLQRAHYVISRHGATTTINLGQVAYECGFTSQSYFST CYRKRFGLTPRQTGKSDRQSAADAGS >RPB_4279 sigma-24 (FecI-like) MSVRGWWWPGRRWWSRRAAAGSRAPGVPAEPMRGSPAVARARMVEMLAGP GAALMDDDSDEALMAAVVARRQQAFRVLMNRHMPRAIRVAQRVVRDPAEA DDIGQEAFLRVWNKASSFDPQIARFTTWLYRIVLNLAFDRARKPQLAPIE EAAEIESGEAGPVETIIAAQQRRLLERAMAALPERQRGAVALFHMEGLSG EDAARAMNLSPKAFESLLARGRAALRKEVERLEGHRRDA >RPB_4259 putative sigma factor MTDLAWIDTAITASRPQAIGALLRYFRDLDTAEEAFQNACLRALKAWPQN GPPRDPAAWLILVGRNVAIDDLRRGKKQQPLPDDEAISDLDDAESALAER LDGSHYRDDILRLLFICCHPELPPTQQIALALRIVSGLTVPQIARAFLVS DAAMEQRITRAKAKVARARVPFETPGAPERSERLGAVAAMIYLVFNEGYS ASGDTAGIRAPLCEEAIRLARLLLRLFPSEPEIMGLTALMLLQHARAPAR FDAHGEIVLLDEQDRGLWDTKLIAEGLALIDKAMRHRRTGAYQIQAAIAA LHARATRPEDTDWAQIDLLYGSLEILQPSPVITLNRAVAVSKVRGAEAAL AMIAPLEERLSNYFHYFGTRGALLLQLGRRDEARTAFDRAIALARTTAEA NHIRMHLDRSKRDDAAERINP >RPB_4514 transcriptional regulator, TetR family MSEKPPPKGTPRRVRADAQRNLKTLLDAALTVFATSGVEAPVREIAEKAG VGIGTLYRHFPQRSDLIVAVFRNGVDACAGAAAELAASHAPFEALSLWMQ RYVDFVATKRGLAAALYSGDPAYDSLPAYFEQKLRPALQALLDAAGAAGE IRRDIEPFDLLKAVAQLCTSAPGGDPAHTRRMVGLLIDGLRYRAGSAAEP GR >RPB_4602 transcriptional regulator, LysR family MNTNITLRQLGFLVAVADTLNFSRAAEQCFVTQPTLSAGLKELEDRLGVV LAERTKRSVLLTPVGAVIAARARAVLLAAREIETLAATQAAPDTGDLRLG AIPTIGPYLIPRALPEIRRAFPGLRLLMREEMTEPLLDGLHHGRLDLILF ALPFETSGIEIMELFEDGYHLAAPPGSFGPEPVRVSQLDGARLMLLERGH CLQRHALSAFPDHDIQQDESFSATSLSTLISMVSEGLGITLLPDLALDAG VLGGQNVAIAPLPDACPRKVVLAWRTTSARAELFRSLGDIFRRTRGLVRP PR >RPB_1969 transcriptional regulator, ArsR family MLLEISFDRRTTRPHPAAMKIDDVAAKFEALGNPTRLKIYRALVRAGEAG TPVGRLQERLKIAPSTLSHHLKTLVAAGLIRQVRDATTLNCHANYDVMRG LLDFMVAECCADATVPKDTKSAA >RPB_2626 transcriptional regulator, MarR family MIKAVATAAEAAAPAVAGQAPVQPLYLEALTLVERLHRRLLDVIKDEFDR RGRADINSVQALLLYNIGDKELTAGELRTRGYYLGSNVSYNLKKLVELGF LDHQRSRVDRRSVRIRLTAQGQEVRHIVDALYQKHVKTVEQVGGISSEEF ATLNKSLHRLERFWTDQILYRL >RPB_2205 sigma-24 (FecI-like) MSRAPCNSDGTAHGLGEAVPVLRESFGQRSLLTVMVDRYGDLRRRLTRRL GSADWADDALQDTYVRLNGSEVVGEVRNPVAYLLRAAFNNALNLRRAETR RLSADEVDALLHIADDAPDVLRIIEGRSDIERLKRIMTELTPRQREILLA ARVDGLSRHEIADRLGISVSLVEKELRRAQEFCMLRFQQKTPR >RPB_4432 transcriptional regulator, IclR family MNAVTFIGMVGMGAESQSVARAVDILQLLSDNGSLGVREIARRMELSPTI VHRLVSTLASTGLAEQAPDTQKYRIGYRAFRIGSSFLSQNDLDRASTPEL VALAEQHQISSFLGVLRGGAMVYLKVVKSNGPIAINNQPGSLAAIHSTAF GKVMLAALPDKEAAEVLGKEPYKRLTKKTKVTFRALLGELREIRETGIAI SDEENLVNVYSVGAAVRDASGEVIASLSGAVPRQGMTKREIEHVNALVKS AADSVSRKMGAPSAPSGGRGR >RPB_0595 transcriptional regulator, XRE family MSTKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTN RVGASRIQQISEVLQVPVSFLFEGGPSGGLANGSGFSEAPSPSYVSDFLA TSEGLALTRAFTKITDAKLRRSIVDLVEQIAAREPNESH >RPB_3912 two component transcriptional regulator, winged helix family MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILL DLNLPDMSGYDVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMT KPFHKDELVARIHAIVRRSKGHAQSVIQTGDLVVNLDTKTVEVGGQRVHL TGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKK LANASDGRNFIETVWGRGYVLREPTEDDVRIPA >RPB_1802 metal dependent phosphohydrolase MTDLVLVSRAADFAARCHAGQRRKGAAKEPYVNHLAEVAELLAVATDGSD AALVAAGWLHDTVEDSGTTRDELIEQFGDDVAALVIECTDDKTLPKAERK RLQIEHAPHLSGRARMVKLADKISNLRSLIFSPPDDWERERLIDYLDWAD RVVAGCRGVNGYLERIYDETASSGRAVL >RPB_2116 transcriptional regulator, TetR family MRYSKEHKLETHARIVRKASVRLREKGAHGIGVADLMKDAGLTHGGFYAH FASREQLVIEAFAYAMDRANERWRKLAEDTPPREMLAIVVNNYLSAAHRD DPGRGCAVPALGAEIARESPKTRRAFAAKLEQMIATMATRFDDVPPKIAR KQAMATLATMMGALLMSRVAGTGELSDAILEAGRDAVLGRATPAKPRPAR KPAATAVSRTRSKAASPR >RPB_3454 two component transcriptional regulator, winged helix family MFIGHSRRRRSSSSRRSQRPCIETAEFKVRLLVVEDDPDLNRQLTTALTD AGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGISVLEAWRRNARA MPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRRSAGH AQSELTCGPVVLDTRTGRVSVRGHPVKLTSHEYRLLAYLMHHSGRVVSRT ELVEHLYDQDFDRDSNTIEVFVGRIRKKLDVDIIQTVRGLGYLLTPPPAD AQLANRT >RPB_2259 transcriptional regulator, TetR family MSTDTTRTAILRAAERLYAERGFGDVTLRDIVAAAEVNLAAVNYHFGSKD ELITELFVTRSIATNRERLNELKAVEAAGGGRAPVDDVLRALVGPTMRGC LGPDSQRSDAARFMIRASIEAIPAIRKIKTREIDHLRKFAAALRRSLPGT ADVEIYWGLHFALAMAHQTVRDSERLLRLSDGACDLNDVDGAIARVVNVA ALALTAPKPSAAAKAPARRER >RPB_1384 urease accessory protein UreG MTAHHGPLRVGIGGPVGSGKTALMDLLCKSMRERYDIAAITNDIYTKWDA EFLVRSGSLTADRIAGVETGGCPHTAIREDASMNLAAVAEMRSKFPDLDL VLIESGGDNLAATFSPELADLTIYVIDVSAGDKIPSKGGPGITRSDLLVI NKIDLAPHVGASLEKMDVDARRMRGERPFVMTNLKKQEGLDRILAFIEAK GGLVSKASEA >RPB_3952 transcriptional regulator, BadM/Rrf2 family MKRDSRLSSVLHALLHMAEHDAPMTSDQLAACMCTHPVVVRRTMGLLREA GLVASERGPSGGWLITADPAAVTLRDLHQALGEPAIFAIGNRNETPECLV EQVVNAALDSAFVDAEALLLERFAEVTLAKLSADFNRRHAAQRARK >RPB_3736 GCN5-related N-acetyltransferase MTTALAWRAEQACLDAWPALRSAHHGDWLLRFGEGVSRRANSVNPLHDRA ETIADDLADFARIYRHHGLPLIVRVPTLLAGAAQIDRELDANGFGREGET CTLFRAFGDERFDADPDVTITLSADADWLAAIGRLQAQSPSHAAVYARVV DAIALPAGFAALRRDGRIVATAYGALSGELLAIESVVVDPALRGQGLARR MMRTLFGWARGHGANAVCLQVVADNTAGRALYASLGFDTELYRYHYRRAS AS >RPB_0236 two component transcriptional regulator, Fis family MIEERSLIVVEDDAGFARTLKRSFERRGYEVVHASTIDEVRDALDERSFG YAVVDLKLGGASGLACVELLHAQDPEMLIVVLTGFASIATAVEAIKLGAC HYLAKPSNTDDIEAAFRKAEGNADIALASQPTSIKTLEWERIHQTLIESE FNISEAARRLGMHRRTLARKLEKRQVR >RPB_0548 helicase MPHSFSAPFTNAPFTNDRAPGAGVTAVLGPTNTGKTHLAIERMVAHPSGL IGLPLRLLAREVYNKIVDRVGPDAVALVTGEEKIKPPKARFWVSTVEAMP RDLDVSFLAVDEVQIAADLERGHVFTDRLLRRRGRDETLLLGAATMRPII ERLLPGASIVTRPRLSQLEFAGDRKLTRQPRRTAIVAFSADEVYAIAELI KRQHGGAAVVLGSLSPRTRNAQVAMFQSGDVDYLVATDAIGMGLNLDVDH VAFASDRKFDGYQFRRLNPSEFAQIAGRAGRATRDGTFGTTGRCAPFEPE LVNALQNHTFDTVKTLQWRNSTLDFASVAGLQVSLAETPRHDALTRAPVA EDVRVLDHAARDAEVREMAHGAAAVERLWDVCQVPDYRKIAPAAHAELVT TLYRFLMRKGRIPDEWFAAQVEQANRIDGGIDTLSARIAQIRTWTFVANR ADWLADPEHWQGISRDIENKLSDALHERLTERFVDRRTSVLMRRLRENTM LNTEIGKTGEVIVEGHVIGRLDGFTFAPDAAEAGSDAKALQATAQKALAG EIESRAEKLSNAPDEQFVLTSDGTVRWTGDAVARLVGSDDVLRPRLRIIA DDRLAGAPREAVQTRLDLWLKTHIEKILGPLFELGKAEDITGIGRGIAFQ LIEALGVIERAKIATEMKDLDQPSRATLRKYGVRFGAYHIYVPSLLKPAA RALASLLWAQKLDNVDMSALSGAQHLASSGRTSFPADKALDRDAYRVLGY RLCGERAVRVDILERLADLIRPALAWREGTSGEKPAGAFDGRSFVVTQAM TSLTGSAGEDFASILRALGYRMEKRPAPPPQPKVAETAPAAAAADAPAAA SDTGLSAEDHAILAGAIAFEPAVTVEADIDTDTDQPAATEAAAEPVAEAA AEATPELAAPAEPATDSPVETAAAAPTTEASATDAPAAEAVASEETASDE TAPVADVAASDAPAPEAAPTETTVDATSAPTSEVAAPAQPDMVEVWRPGG RSDEHRARPDRNRQRHRPQQGGQAAAPAEGEAAGEAKRDRPGGGRRGDRK GGGDFRRDRPREGDGAPPQATAGEGRPPRERFKGRDNKFGDKFKGGGKGG RDQGASHRQVASSAPPRERDRPIDPNSPFAKLAALKEQLTAGRKE >RPB_4591 transcriptional regulator, MarR family MTRPACTRPPNSRLTIYRAQYKSTVMKSSAPSTARPLRPADKLKLETQLC FALYSTLLGVNKVYRSLLRAFDLTYPQYLVMLVLWEKDQVNVSEICDQLY LETTTLTPLLKRLEARGLIRRRRSAEDERQVIVSLTDEGRALRQQVRHVP DCLGAAMGGSVEEIVELRDKLKKVRSKLFEAA >RPB_3400 Iron dependent repressor MPLTARQKPAPHDGISTELPSEHTQARRFGKTRSAQSTALFEDYVELIAD LLTGVGEARPTDIARRLGVSHATAIKAISRLKRAGLATSRPYRGVFLTEN GHALAEKVHTRHRLVVDLLIAVGVPAEAAEADAEGMEHHVSDATLAAFAQ FLESR >RPB_0135 transcriptional regulator, GntR family MGKLAQLAYQEAGRNGSLDRSANASANAASLGNSDALFWGALFRGMDRGG SFLQLQIRQIIVTAIEDGRLPLGMRMPSSRDLAAVLKVSRNTVVIAYEQL VDQNFLVSRQRSGYFVAGLSKKVASGAGKPAEAASRDDAHWAARYAVQPS AHRNIVKPADWQAQPYPFIFGQFDPSLFPTNDWRESARAALSVPEINNWA RDLIDGDDPALIEQLQLQVLPRRGIHARSDEIMMTIGAQHALYLIATLFI NDRTRVGIEEPGYPDARNIFRMLTPDVVPLASDAQGLLPDERLQSCALAY VTASHQCPTATVMPLQRRLELLKAAETGDVVLVEDDYEGELMPEAATLPP LKSLDHASNVLYVGSLSKALAPGLRLGYVVAPAPVIRELRALRRLMLRHP PLNNQRVAALFIGLGHYRSHLAQVGRVLLERAKMLDRLLPKHLPDCSFSR GPGSTNYWIACPPGTDTTALAREALAQGVVIEPGAVFSMDETASRHCFRL GFSSIRTDRIETGIQRLGEVIAEYLKK >RPB_2607 DNA-directed RNA polymerase, omega subunit MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSL REIAEQTVSPEDLKEELVHSLQKFVEVDEPEQDTVPLIGSAGASVDADDT EVALERMTEEELLKGLEGLAPPEEQPEEDE >RPB_2319 DNA-directed RNA polymerase, alpha subunit MTIQKNWQELIRPNKLQVTAGSDATRFATLVAEPLERGFGQTLGNALRRV LLSSLQGAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISLKMQGEG PKRMVVKKQGPGVVTAGDIQTVGDIVVLNPDLQICTLDEGAEIRMEFTVN TGKGYVAAERNRPEDAPIGLIPVDSLYSPVRKVSYKVENTREGQILDYDK LTMTVETNGALTPDDAVAFAARILQDQLNVFVNFEEPRKEVTQEIIPDLA FNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRK SLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY >RPB_0714 transcriptional regulator, AraC family MTELLSEPLSRFRAMDTSDPDELAHALSTVYGARNFQCGSAGTFRVRGNF VQLQDIALGFTCGRAPLSVDFPEADFARLQIALTGQSSTRSAGVTTAIDP RQACVSSPGRTAHTEFGPFYEHLLLRVQSSAIDRKLTALLGTKPKRAIEF EPAASNDLLQAANLRRLIGFVNSQINSASAPLPELVMAELQEAITLLFLT AYPHNFTKFLEADSRSAAPGHVRRIEEYIEANWAEPITIETLTDLTGISA RGIFKAFQRSRGYSPMAFAKQVRLRQARTMLQQGRALTSVTAAAFACGFS NLGHFAKDYRTAFGERPSETLVRSSR >RPB_1209 anti-sigma factor MTDPEIPVTEDELHAYVDGELPAERRGDVEAWLATHPADAERVASWRAMA EALHARYDRVLDEPVPPRLQLARLESPPRRWIAGAIAATLAAFIAGGGAG WFAHGAAATPNAFRSFTVDALDAHRLYVVEVRHPVEVEGSERAHLQQWLS KRVGYPVKAPELEGSGLKLIGGRLLPGPDAPAAFLMYESANGERFTLYTS RADTDTTQMRYASDHRDGAMFWADRGVGYVLSGPIDKERLRQVAQQVYAQ TDSNGG >RPB_3612 transcriptional regulator, MarR family MTARSVSRKPNRKASERPEARGPTLDLERYVPAFITFIANKLSNSATAFY QGHFGVNVTEWRMMSLLAIEPGISAARICEVIGFNKGPVSRTLADMQQRG LIAIRTDPDDGRTHSISLTAKGRATHDKVIVAALERERRLMSCLNKSEQE VLIDLLRRLHDNLDAVTGDKV >RPB_1386 sigma-24 (FecI-like) MPLTDSLRDDILAAVPSLRAFAISLSGNGDRADDLVQETLLRALANIDSF QPGSNLPAWLFTILRNLFRSDYRKRRREVEDADGSYAKTLKSQPGQNAHL EFEEFRAALEKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNR ARSKLSALLYVDGAEDFGPDDTVRAVIGSNG >RPB_1826 transcriptional regulator, TetR family MSQDLDERPLSDPVRSRNARSRDECIMVYRRTNQVVKRLAARRSAILAAA RETAVEGGMAAVQIAPVASRANVAAGTVYRYFPSKADLISELIADVSRDE LAAIRRAADAAPGPSSALAAAVTTVAVHVLSHRKLAWGILAEPVDVDVSA SRLASRRDIAGEMESRIDAAVRAGHLPAQDTALAATALLGAVHESLVGPL APDNLDDPAKLRDAVQTVTLLALRAVGVMDARARGLVVQAVVPSRILVGA >RPB_4518 transcriptional regulator, LysR family MRFDLVDLQLFVAVVEARSITGGAARAHLALASASARIRGLEQALGVTLL RRGRRGVAPTAAGESLFGHARVVLQDVEVMRGDLAAHARGLKASVHLLAN TASLSEHLPKTLAEFLAAHPDFNVEVEERESAEIVAAIAAGAAEVGIAVD TAVPDTLERFAFCDDRLVLVLPPHDPLAQRRGIRLAEVLQRDFVGLSGPN ALHAHVAAQAARLGARLRFRARLRDFAGLCQLVEAGVGVAVMPETAVRAN ARTMRIRAVRLLDEWASRKLVICARSLKALPRPAQQLVAHLRRSAPP >RPB_4079 transcriptional regulator, TetR family MSNISHRRWSQSATLHGCMMDGRPANDQSPWMPFESRRRARDEKREAVLR TAVQLFLEQGYHRATLNEVAERLNITKPALYNYFRSKDEILFECWALGQE QVDEFIAVINRSGQNGLGKLRALVRAYAGTMATDFGASLVRFDPRDLKPH NAQTVRDAKRSIDRTFRRYIAEGIADKSIKPCDPKLAAFAIAGSLNWIGH WYQRGGPLTPDAIADEFAVRLTEGLAAPSIKKSVVKAPTATKKK >RPB_3622 transcriptional regulator, LysR family MVDFKALETFLWVVTLGSFRGAAQKLNTTQPAISQRIAQLERELGVRLLQ RDHRMASPTPSGRQLMLYAEKLIGLRTEMLAAIGDQSSMRGVLRLGVAET IVHTWLPRLIERVNRLYPNLSLEIEVDITPNLRARLLAQEIELAFLLGPM TASTVRSRVLCDYEIGFLASPSLGLGTGLLNVNDLARFPIITFPRKTQPY EIVRSLFNKPELPPIRLHASASLGTVIHMAIQGLGVAVIPTAIVEDELAD RRLQLLQTDLKISPLRFSASWLASPDTIAIERVAELAAEIAHSGGFMPET SHLAPDILPAEEPVAG >RPB_2067 ROK MSAIFAVDLGATWLRTARVAPDGRWIDRKARVPTPDGPAEARKLIETAWR RAGCAEAVALATAPELDSDGVVRRWPNRRDYEGAPLLTDALRCVARLALF DDATAAALSADDVDGAADAITLCLSIGSGIGGGVVIAGRPLVGAHHAAMD AGHMPVPSAAGLRCACGRDGCLQAVASGGALQRHGGGALFGDARAEPALH RATAALAEALAILQALFDPERVVIAGGLGLSPLFDRIAAELKRSGVALAI APHHHGDDAALVGAAIGLARGLAPRASTSAAISPPAARGDPRCKVSSPNG YQPGRVSTTRTSGA >RPB_3378 transcriptional regulator, LuxR family MPIHDSAAVASDLSRPATPAAFAEAAMLSLRPVFGASRAVLSDRQRGRPG EMHFVNWPSWCQAHYCAEVRARDPIRSWLDREASENGVTRLSELLPATRR AALPRETLLADSGAGFVLIMALREQNRIVGALSLVRDAGHGDFDERDRGL ALALLPLLEMAYHGVIARGAATVPLFAGNDPLHALTPRERQVAALAAAGH PNKSIARMLDASPWTIKNHMRAVLDKTGTRNRTELSALIGSQRETARPG >RPB_0957 transcriptional regulator, NifA, Fis Family MAQREVRLVESEQSRQPMNQNPIPLSEIALTGIFEISKILTAPARLEVTL ANVVNLLQSFLQMRNGVVSLLADDSVPDITVGVGWNEGSDNRYRARLPQK AIDQIVATSVPLVADNVAAHPMFSAADALALGATDETRVSFIGVPIRIDS RVVGTLTIDRVRDGQSIFRMDADVRFLTMVANLIGQTVKLHRVVARDRER LMAESHRLQKELYELKPQRERKRVRVDGIVGESPAIRTLLAKVSIIAKSQ SPVLLRGESGTGKELIAKAIHELSARANGPFIKINCAALPESVLESELFG HEKGAFTGAIASRKGRFELADKGTLFLDEIGEISASFQAKLLRVLQEQEF ERVGGNQTIKVNVRIVAATNRNLEEAVARKEFRADLYYRINVVPMILPPL RDRPTDIPLLASEFLKNFNKENDRELQFEPHALELLKACSFPGNVRELEN CVRRTATLAIGPEITDSDFACHQDECLSAILWKGHAEPAPVRPRPQIPLQ VMPRKAPLEVVAPREAVSVSPDPVSTPMSAESANGGPMSERERLVNAMER SGWVQAKAARLLGLTPRQIGYALKKYDIELKHF >RPB_0598 NusA antitermination factor MAVSANKLELLQIADAVAREKSIDRGIVIAAMEDAIAKAARARYGSETDV HAEIDAKKGELRLSRHMLVVENVENPANQISLKAAQRANPGAQIGDTIAD TLPPLEYGRIAAQSAKQVIVQKVREAERDRQYSEFKDRIGDIVNGVVKRV EYGSVIVDLGRGEAIVRRDEMLPRESFRNGDRVRAYIFDVRRETRGPQIF LSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGVVSRDSSVD PVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSKV VIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETEE SERRQADFENSTRVFMEALNVDEVVGQLLASEGFTSVEELALVDIRELAS IEGFDEETATELQARASEYLDRVETEMEARRLELGVEDALKDVPGITSKI LVKLGEGDVKTVEDLAGCATDDLVGWTERKEGAEPVKFAGILDGVEGVTR DEAEDLIMQARVKAGWITEEELASSKGEAAIAETEAEAE >RPB_1974 transcriptional regulator, LysR family MATINLRNVDLNLLIVFDAVYATGNISHAARQLALSQPAVSNALTRLREH FDDPLFVRAGRGVKPTLRSQQMIEPVREALRLIRQQFDGDRSLDLGSYKR TFRIVIVDPLEAMLMPTMLREISAHAPQVTIESRPPWNTNVADAIIAGTL DLACYTFPVSAPGLVFKTICPCDHVIVARRGHPKIGATLDAETFLSLAQV ALIPELRGHTNIDRDITTRGGNRRIAYMVNKVWSMPGVVGSTDLVTVMPR RFAELMAPKFGLQIFESPIPISPQDYHMIWHEKNTDDPGHKWLRDTMVKA MQPDPAPAGLVPAAAAC >RPB_1119 transcriptional regulator, GntR family MRRPVTDATAETEDIRRRLNETQQPLYVSLSNLLETDIYEGRWPAGAQLP TIAELSERYDVARVTIRQALGVLSAKGLIIPIQGKGTFVADQVKPRKTIS LDSDWNYLLATLDGNSAESLDVIKSCALPSTVDGPEKHFKDYRYMKRIHR AYDEPYCVNDVYLANDYYNRDPETFDRQMIIPHLTRVSRAKLKRMKQSVR ITSADLAVAKYMNIPVNAPVAEVRRLITNRKDEIVFFSTGLYRGDLVVFN TTIDVPG >RPB_3117 transcriptional regulator, TetR family MANASTSARTTKVRKSAVSAAPAKASRARVKPVNGAGHGQIATRQRILDV ATKEFSAKGYDGARVDDIMRIAQVSKNLIYHYFGSKEGLFIAVLEAAYEG MHAYQTAWPLDVASPIDGVRKLVQSTFKYWHGSPEFIGLLNSENFHKGRH LRKSKLTKAGYSGLMANIGELLKQGERSGDFRRNVDPVELYISISALAYH FLSNRYTLAYLLDRKLSTEEDMKVRTAHIEDLILSYLRYGAPNTAGRK >RPB_3039 putative transcriptional regulator, CopG family MHRVTVTLDDDLMKKLDAIIEARGYQNRSEAIRDLARIGIQQTSAHASAE HCVGAMVYTYDHSKRDLPRKLTQSFHNHHELSRATMHVHLDHDQCLEVTI LDGKANEIQHFADHIFSERGVRYGRLVTIPTSGDGHAHD >RPB_1979 transcriptional regulator, TetR family MVAPATTAQAPHADDDSVKRRQIVKGARAVFLEQGFDGASMGEIARAAGV SKGTLYVYFADKNSLFCEIMEQESLAQGMLAFDFTPEREVEATLKAFGTA YIQALCNPRGASAIRTVMAIAERMPEIGQRYYERVIANSLGRFARYLELH VQSGELEIGNCQLAAAQFTKLCQATLFLPFIFQMTETPSPARIAEVVDSA TRMFLAAYRAKPDAAD >RPB_3240 transcriptional regulator, MarR family MTSPRAKSAPALPPALPDVSDMLCFSIYSAEHAFTQLYRPLLDRLKLTYP QFLVMMTLWRRDGQAVKELGKALFLDSSTLTPLLKRLEAAGLVTRTRNPK DEREVQLRLTDAGRALQSQAADVMQCVAQAVALDEATVTAIKTAIDAIRD RLHDQTKS >RPB_4149 putative transcriptional regulator MVSTTPLDVADYLESPEMISAYLDEAFASEDPALIDKALATVRRAPAQLK TIPAETLKRITELTEGMVFDPDEDIEGGVNL >RPB_3909 sigma-24 (FecI-like) MLTSAELVWLLAAVAKGDQAAFERLYNATRAKLYGVVLRILRRQDLAEEV IQETYVKIWNSAGTFNPGVASPITWMASIARNRAIDVARKRSEVSIEDEP AAQEAAADSPDPLARREMTEELKRLLECVGRLEPDRQKLVLLAYYNGWSR EQLAAKFDAPVNTVKTWLRRSLLDIRECLGLV >RPB_1179 cold-shock DNA-binding domain protein MPNTGTVKFFNGERGYGFIKPDDGGRDVFVHITAVERAGLKDLTEGQRIS FEVEPDKKGKGPKAVNLVIS >RPB_1139 transcriptional regulator, XRE family with cupin sensor domain MTTHDTVEGRKQQMKKPKPDPSSADPQRGAAEYRTGSNAPQDTERSLERA LGAKIRAIRRERDLSVSDLSSASNISAGMMSKIENGQISPSLSTLQSIAG ALNVPLSLLFAASEQRRDCSFVRAKQGVAIERRGSKAGHLYQLLGHVIGG EVVVEPYLISLQEGASTHTAFQHAGMEFIYMLTGEVIYRHGDNSYRLRPG DSMLFDSGALHGPETLVKLPMTYLSIIVYPRS >RPB_4651 hypothetical protein MRAPQMLRPARHRETQIRHRGGELRSKPSASLRSRRQRNVRLPYTVTATR QDEKMQSVRNSSLIALAKARVWESEGWRVMIATPDGRQHDIAQLDELTAF KPEKLTALSTILPADEAVSPKADTVDLAAADSPGFHIAEMHGPWPDGVHG PWRPHSQDTATVQTEELLSS >RPB_1569 transcriptional regulator, MerR family MKIGDLARRTGLTAHTLRYYERIGLLPRASRDASGQRDYDASILVWIAFL GRLKTTGMPIRDMLRYAKLRARGAATEDARRVLLQQHRDKVQAHVAELKA CLTVLDTKIAGYAAGASKVETDDDATHNRPARKVRARAARARGD >RPB_1151 transcriptional regulator, AsnC family MDRIDLKILGCLQDDAMMPVAAVAEKAGLSTSPCWRRIQALIEKKIIRRR VALLDANLVNVPVTVFVTLKTNKHHSKWMTTFAREIAKIPEVTEFYRMSG EVDYLLRIVVPDVAAYDNVYKRLISAAELFDVSSSFAMETIKYSTALPLN YAKV >RPB_4666 response regulator receiver sensor signal transduction histidine kinase MADQDDILQLIEDTEPGPEPSNTKRWKIAVIDDDPAVHEGTRFALSDYNL NGQTLEILSAYSGAEGRELMRANPDIAAVLLDVIMESDAAGLELVEFIRN EMRNETVRIILRTGQPGQAPERRVIVDYDINDYKAKTELTADKLFTSLTA ALRSYQQLERMVQTRRGLEIIIDAASTLYDFKSMQRLAEGVLTQIASLLN VDCAGILVLRDAGDDFSVLAGSGCYSRFIGSAGIRPLDQDLRQMVEEAFR RRKHEFADQRTVLYVRTGSGREVVVLLQAERELTDTDRSLVEIFGSRLSI AFDNVILYKQLHEANTQLEDRVAQRTRALTQANRRLSTQWMRLQRANAFK NEILGTVAHDLKNPLGVILGRTEMLTELIGADSPKENVIAQVDHIREATR RLTSMVDHLISDAMADAFDISIRREAVDLAALVAEVAEANRPMAQNKQQA ISVSIPDARMTMCDADRVREAIDNLVSNAIKYSPIGGKIALQVDGDDANT VVRVTDEGAGLSPEDLSRLFGRFQRLSAKPTAGESSTGLGLSIVKKIIDM HGGNVGAHSPGPGQGATFTITLPASPAS >RPB_0759 sigma-24 (FecI-like) MAHALHTEPVDTLATPPAASATLAPDAIVPHDPDAPRDIDEELLDRLAAN DEAAFRLLVERHIDRAFGIALRLLGSRADAEDVVQDTMLKVWTHRGRWEH GRAKFSTWLYRVVTNRCIDLHRRPRTDNVDAVPEPADAKPDACSTMQRNE ITQLLETAIQKLPEQQRVAVILSYHENMSNGDIAEVMSTTVAAVESLLKR GRQQLREILRRHEPDLLQAFTDC >RPB_2237 transcriptional regulator, TetR family MATTANSEQCPLSTTDKTPPPQSAAPRGRPKLQSDEEQRARIADCAMRLF LKKGYGRTTTEDIAAHCRISKQTLYRLFPGKPALFATIVDRHRHSMLALP GDYDALPLDLALERIFNIDIEPAAHDERMALVRLVMVEAHQYPELNEILR RHGAERSHAELAGWLKRRSKQEAIDIGDAMHSAWLLMDMMFGALAFKPFN ESSQSRTVDLARHIRRFISVFLNGIRPR >RPB_0938 transcriptional regulator, MarR family MQQSQHLIHSSRTIKSQPVARSPSSNPPITEHLAYLLAQANREINRQLEA RLRDEGVPVEQWRILKVLSDGKGHSMGDLAEEVLLNHPTLTKMIDRMVSD SLVYRVQAPDDRRKVLMYSSERGKALTQRLNALALSQEAHIAENYGDKAT AELKRLLESLIDTAT >RPB_1791 cold-shock DNA-binding domain protein MSMGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISY EIVADRRSGKSSADNLRAAS >RPB_2809 SOS-response transcriptional repressor, LexA MLTRKQFELLKFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEE RGFIRRLPNRARAIEVIKLPDLGGNSGARRGFTPSVIEGNLGKVRPPSPQ HAEDDSDRNVAVPVMGRIAAGTPIEALQTRSHTISVPPDMLGSGEHYALE VRGDSMMDAGILDGDMALIQRNESADTGDIVVALIDEEEATLKRFRRRGA SIALEPANSAYEVRILPPNRVRIQGKLIGLYRKY >RPB_0105 GCN5-related N-acetyltransferase MPRPRLALISRMSTTLIEVRPARAADASAVAGTHDEAWRSAYQGIIPGAE LEKLINRRGPNWWDSAIRKGSRVSVLCFGDKVAGYANYGRNRARSLHFDG EIYELYLRPEFQGLGFGRRLFAAARRDLAQSGLKSMVIWALSDNEAATEF YRALGGRMVARSSERFGPKSLDKVAFAWSN >RPB_3252 transcriptional regulator, AsnC family MPDLDAIDRKILASLQADGRITMQELADKVGLSVSPCHRRVKLLESRGVI TRYTAQVDQKAIGLHVSVFISIKLTRQKEEDLARFARAISKWDEVLECYL MTGNRDYLLRVVAADLAAYESFLKTKLTRLDGIASIESSFALSQVKYSIA LPV >RPB_2217 sigma-24 (FecI-like) MFDRNSKSLREALAADYQGLAKRLTRCLGSADVAHETLHETFLKVDRVSD AVEIRSPVDYLFRIALNVAKDRNKKDRHLLSAGEVAAIMDVVDDRPDPAI VAESRMEIAEFQKALGELPQRRREVFIAAHLEQIPHRDIAQRFGINIRTV EFDIQHAMEYLSRRLGRRVVRRYGPRPKPRAVD >RPB_2652 transcriptional regulator, MerR family MDKAPDAFRTISEVADELDIPQHVLRFWETRFTQIKPMKRSGGRRYYRPD DVDLLKGIRRLLYGEGYTIRGVQRILKEHGIKSVQRLADNEASATFGAVE EAIGRSVAEEDYEPAPGGIDLDDDDYEGENEGLDLHAMMAEPDLRAAAAP ARSASQATARRAPAFEDDDDDLPAMASPAPRLNLPPLDLPPANNAPARPP VDLAPLKAVLQDLIACREALDAAMKDG >RPB_1050 transcriptional regulator, ArsR family MPVPKRARRPSTDGLTHVDTGELRDNALVASEFLKTLSNPSRLVMLCLLA EGERSVSELATTLDERQPTVSQQLARLRGERLVETRRDGQQVFYSLASDE VRSLILVLHAIFCAKPRGKAAKVTVLRPVKTVAAKKTAARR >RPB_2608 (p)ppGpp synthetase I MASGRRIPRQVEAVADAATVATPVVVPPKPRGARARMMRQYDLVELVRNY NPNTDEDMLNRAYVYAMKAHGEQTRASGDPYFSHPLEVAAILTNLKLDDA TIVAALLHDTIEDTEATRTEIDKLFGHEIGSLVEGLTKLKRLELVSREAK QAENLRKLLLAIADDVRVLLIKLADRLHNMRTLDFVPPAARQRIAEETLD IYAPLAGRMGMQEMREELEDLSFRTLDPEAFAVVMQRLDALAERNRNLIG EIETQLCANLANNGIAAEVTGRRKRPFSIWTKMERKSVGFEQLSDIYGFR VVLNDIEACYRALGVVHTTWPMVPGRFKDYISTPKQNDYRSLHTTVIGPG QQRVELQFRTQDMNQIAEYGIAAHAFYKDGVGSPTELLNRESNAFAWLRH TVEMLSESTNPEEFLEHTKLELFHDQVFCFTPKGKLIALPRAANVIDFAY AVHTDVGNSAVGCKINGKFAPLSSELQNGDEVEVLTSSVQSAPPAAWESL ARTGKARAAIRRATRTAMRDQYAGLGRRIVERLFARAKIEYADDKLRGAL PRLARASIEEVMASVGRGEMKASDVARAMYPDYKEERIARFGGKKPEKAG TKAVGEPSKVGAAVPIGGIHSGLPVKFAPDGGAVPGDRIIGIVTPGEGIT IYPIHSPALKDFEEEPERWLDVKWDIDETTPQRFPARLFVQNVNEPGSLA QIAGVIAEHDGNIDNINMSRRSPDFTELTIDLEVYDLKHLSAIIAQLRAK AVVAHVERVNG >RPB_4056 transcriptional regulator, GntR family MTIDPLALDRGAGARKAGAIAAAPGQPAVTIGKTTRAEELRRLLADEIVR GALPPGAPLDETELAHRFKVSRTPVREALRQLVTSGLVESRPHHGAVVAK PSFERLSGMFEAMAELEAMCAGFAAERMTPLERRDLEAIHDELRMLSHHG NPERFHDVNERFHNAIYAGAHNDYIAEITLATRVRVQPFRRAQFRNLGRL AKSQAEHDRVVVAIMRGDRNAAAAAMRGHIALVRDEYEIYAVSV >RPB_0140 transcriptional regulator, LysR family MIESAAIRYFREVTESGSIKQAAATLRIAPSAISRQIQAIEEEMSVKLFE RNARGMALTDAGRLLYRYAVENRSQLDGIRAKVQEFETMRRGQIRFATVE GMLANFLSNFLVELSVDYPGIFVSTTVVGSRAVAELVGRNEVDLGLVFGR APRRDLIELARMRQSLCLIVAPDHPMADREACAVKDLAGLRVIVPDPSFG IRQEVDRACANAKVRLEICSETNSLAFAQMLASRTDLATFLPRDTAMPAI AAGRLVAVPLRDKRLEATQVTLVQLATRNISPSCRMVADLLIARMKRARE >RPB_3220 GCN5-related N-acetyltransferase MSMTSPRWRPMTAADLAAVNAIAAQVHVAFPEDPAIFAERLALYPAGCFV LDREPDGIGGYVVSHPWRIAEPPALDTLLGRLPAPASTYYIHDLALLPQG RGLGAGAAIVARLLRHAVAAGLSNISLVAVSGSVAFWRSQGFDVMETQAL APKLASYGADARYMVCTAETG >RPB_0180 transcriptional regulator, AraC family MQRLTTSGDRPSTARAFVYLTQILQKAAETVERDPALARCCIERAVALLR DVQARHELIDEVPPETLDHPGLARWQLNRVVAHVEQNIDRSLRIRDLAQL IDLSASHFARVFRRSVGVAPRNFVLERRVARAKLLMQTSELPLSEVALAC GLSDQAHLSRIFRRFTGMPPNAWRRQRRDRESQDDGELASKPISRAVADS QPSRTTRFNRSTGAERAATSKLA >RPB_3273 transcriptional regulator, TetR family MTQKGGRPRKADGEAKSIHIIETASRLFAQQGYAATSVEQVVAACGVGKD TVYRRFPSKLALFEGVVEHARIQTQAHFHSTMAAAEKGDVLTQLRAAARW LLAVNLDPTLIAFKRIAFSEALVVGQSVAGNKHDPIMDRLFALIKEAQRT GDLAPGDVSFLAMHLLNCVAVGPMIDAMLGRTTYASTRAQNAYFETAWKL FLNGARRGAS >RPB_1140 transcriptional regulator, AraC family MPKTLPAPASRPSRVGFLLIDGFALMSFASAVEPLRAANAIAGRTLYQWF HVSIDGRPIGASSGLSIQPDCAIDGAQEFDIVLVCAGGNPTKFSDRRTMS WLRAQARRGVAIGGISGGPYLLARAKVLDGYRCTIHWEHAPAFAEAFPHL DLTRNLFEIDRERLTCGGGVAGLDMMQALIRRDHGPELAAKVSDWFLQTN VRLGDSSQRPNARERGRLGHPALQAAIELMERRLREPASRTEIARAAGVS LRQLERLFTTHLKTTIERRYLMIRLQRARTLLRQTSLPVTQIGADCGFVS LAHFSRVYRQRFARTPSADRRL >RPB_4218 transcriptional regulator, DeoR family MTCGANARTMEQIASGVRVTALSHRQSEILNLARASGRVMVDDLARRFDV SAQTIRKDLNDLCDQRSLTRIHGGAIIASGVENLAYEARRFVAAEEKRAI GVAAASQIPDGCSLFINIGTTTEEVASALTSHQDLLVITNNLNVAMLLYK YPRIEVIVAGGTVRRSDGAVIGSAAIGLIGQFKVDYAIIGASAIDEEGAL LDFDYREVQASQAIIANARSVMLVADSTKLRRSAPVRIAHLSQIQTFVTD EALPPALQSICDTRGIEVIAALPKRADDLDESAA >RPB_3412 transcriptional regulator, TetR family MPPEAKKRARRKAERPAEILDAAFEEFVKHGYSATRLEDVAALAGVTKGT IYFYFDTKERVFEEMVRHKSMEFLPRLGDYAATLTGSHTDRLRAMVVFAY AHISENRASREILRFLISEGARFPDLVDRHYEEFVEPMMQHFKKVIDAGV AAGEFRDAPATEFVEIVMSPALLISLWSLLFGTRKRFDMDSFTEASTDLL LRGLIR >RPB_0125 transcriptional regulator, TetR family MASETDVAARELAAPRRKAAAKRNTSAKPRRRTRTPDQTREALLRAAIAE FAREGYGGARVDRISKAAKSNDRMLYYYFVSKEKLFHHVIEHCYAQLVAS EEALDLDLTRPREALAALVAFNWQYYWENPELLSILASENLFKGRHVKNK IRDVFANAQFGLLERILNAGIDRRDFRPDCDRTFIYLSILSLTYFYRSNL YTLSNYMQIDLADQERRKAWLAHVQAMIEDLVRRRDDR >RPB_2689 putative transcriptional regulator MPKPDTNAAPFSYEGLDRVIHEKARLGMLTSLMAHPKGLAFADLKRLCGL TDGNLSRHLQVLQEAGMVEVSKGYEANRPLTTCRLTKTGRRQFLDYLTVL EQLVRDAAKAAGSSDPLPTGLHTRPV >RPB_4565 two component transcriptional regulator, LuxR family MSTPASTHLIIADDHPLFRDALRLAVSSVVPGAKIGEAGSFEDLTAMLER DGDVDLVLLDLKMPGISGFSGLIYLRAQYPAIPVVVVSASDDVETIRRSL DFGASGFVPKRFGVEKLGDAILRVLDGDVWVPPDVDLSAAADPETSKLRD RLVTLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVE SRTQAVIAAAKISGSQWRQDEPVA >RPB_4302 transcriptional regulator, ArsR family MEAAADQASDLLKALANRHRLLIVCQLIGGERSVGDLAEVLSLRDSTVSQ HLALLRKDGLVAARRDAQTIYYSIASEPARELLTTLYRLYCPAPPARKTA SKPEKA >RPB_2128 GCN5-related N-acetyltransferase MSDLIRRATDDDVAAITDLTMRAYAKWEALIGYAPLPMLADYAVAITQHR FDLLESDGVLAALIETELRDDDLLIVNVAVSPDAQKRGHGRRLLALAEQL ARAAGRDTLRLYTNERFDENVRLYASLGYARERLETRANGARVVHMVKGI G >RPB_4220 transcriptional regulator, TetR family MTLTSDNTEADMRHRILVVAERLFRQIGYQKTTVADIAKVLQMSPANVYR FFDSKKAIHKGVARHLMGEVEQAADSIAAARGPAAERLRDLLTTVHRMNC ERYIGDEKLHEMVAIAMEENWDVCVSHMQHVTGLIGKVIAEGAESGEFAV ANVPMAAQCTCTSMMRFFHPQMIAQAFHKDGPTPDQMIDFVLAGLGAKRR AISP >RPB_3065 two component transcriptional regulator, LuxR family MPETSIRLLIADDHPVVRAGLRLVLGTISGLSVVAEAESGEEALYLCSKH RPDIVIMDVKMAGIGGTSSTRAICQTYHPGTRVLGLTTEADTTTVSQMID AGASGLLLKTCTVNELETAIRDVLAGRIVLDPLLQKGAPRARTAAAESEI TLGSQQKKVLALLVKGFTNSEIAERLGISLPTARYHVSAILVKLGASNRA EAAGLAVRLNIVGADDY >RPB_2112 transcriptional regulator, IclR family MGRRSERLCRQASGDPAGESDVIQVVSRAFDVLRCFEGAETRLGNLEISN RCGLPRSTVSRLTHTLTRMGQLVYLPRDQKYRIGPSAVAMGTAMMRGLQL RNLVRTRLQEVAEQIPGTIGFLIPDRFHLVYFEYARAPHALGLHSTTGSR IAMAQTAGGHAYTAALDEDVANALLTEMSREFPQHAPLLRDRLEANRAML RERGYVVSCGLFSPHINGIAVPMWSPQYQTYVVVNIGLLAAMYDEQRIHD EVAPVLLRLSAAIDALIQNADGGLMTVGTAGKATSRPRPASSLAADVRPD VRPAGRARELGAAEPRRQGQPA >RPB_2794 transcriptional regulator, LuxR family MSESSALSDLIGTIYDAALDPTLWIRTLEQSCDFVGGSSAALYWHDTATV RAQALYLIGEDPHYTKLYFEKYLSLNPTFPAAAFVEPGVIFTPTDIVPES ELVKTRFHREWVQPQGIVDVIGVNLEKGTTASSLFNIRRTHKHGVADAGA RERTALLVPHFQRAVAIGRLFQQASKAEAVLTETLDLVEAAVFLVGVNGR ISFANGPGRAMLEEGTLLRERRNMLTAVAPESNRMLREIFIAAEDGDTSV GNRGVAIPLASSPHQRWFAHVLPLTSGDRSRNGSLPSAVAAVFVRKTSPV SPPPLEALANIYKLTASELRVLDAMTKVSSVRAASELLGIAQATVKTHLH NLFRKTGSHRQSDLVKLMAGFEPPPPSS >RPB_4489 GCN5-related N-acetyltransferase MISKKMDARIKSGHDDCAHMTPFTLRPYRDADEDAAIDLWHRTWQLAYPA IDFDKRVDWWRARWRGELVPQAAIVVAEQDGALTGFVTIDASGYLDQLVV GPEQWGTGLAAALVDEAKRLSPREVTLKVNADNVRALKFYQRAGFITTGE EVNSSARPVLNMRWAP >RPB_4598 transcriptional regulator, MarR family MRVHGRLAIAAFAGPALEFARTMDGAMKRKPSTEATAAWVRLMRVRSRVL DAVELELKKAGFPPLAWYDALLELSRAPAGEMRPVELEKQMLIPQYSTSR LIDRLVDEGLAARRECKMDKRGQFVEITEAGRELQKKMWAAYSAAIEKHV GSKLSDADALRLCGLLDRLGCSCDGAAATPAARDTASSR >RPB_1301 putative transcriptional regulator, XRE family MRAARALLGIDQRALAKLAGVSVPTIQRMEASDGNVRGIVESLTRVVDAL NRAGVELIGERARSEDGGRGVRLRQASPPAGRDDA >RPB_3860 serine/threonine protein kinase MTGMDQPSFEPGSTVDGYLIEGPLHRGGMAELFAVRRADNPMPMVMKIPR TGEGEDPAAIVSFEMEQMLMPRLNGPHVPQFVALADFSTQPYIVMERIAG EPLLSRLPDLPLPYDEAAGIAAKIAAAVADLHRQHVIHHDIKPSNIMFRP SGEAVLLDMGLACSDQLPDLMQEEFRLPFGTAPYMAPERLLGVRNDPRSD LFGLGVLLYFFTTGIRPFGETETMYGMRRRLWRDPVPPRKLRPDYPPWLQ EIVLRCLEIQPQWRYPTAAQLVFDLTHPTEVKLTTRSEKLRRDPWKTVLR RRFNKELTRPRQETLAAHLASAPIIAVAIDIAEGSAALNDELRVTAGRIL ATLPSARLACLNVLKLGRMTIDRTLDEHGHNKHVDRLVALRHWAEPLKLD DDRLTAHVLEAVDPASAILEFAQASRVDHILIGARRNSVLRTLAGSVSAK VAGEANCTVTIVRAAAAPARPSRRPSVSQDNRDDQA >RPB_1210 sigma-24 (FecI-like) MESQVGAIGAMNEFRDGVEAMIPALRRYARALARDTDIADDLVQDTLVRA LRSEKLFLGGDLRSWLYTILTNLNRNRRRALARRPTLMPWTDTGADASGT EAEGGDIARALATLVEEQRAALLLVALEGLSYREVADIQGVPIGTVMSRL ARARAHIRASLDGEKPMLRRVK >RPB_2285 DNA-directed RNA polymerase, beta subunit MAQQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVAEPPGGRD DEGLQAVFRSVFPISDFSNASMLEFVRYEFEPPKYDVDECRQRGMTYAAP LKVTLRLIVFDIDEETGARSVKDIKEQDVYMGDIPLMTMNGTFVVNGTER VIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDIEFDAKDI VFARIDRRRKIPVTSLMFALGLDGEEILSTFYNKILYKRTKEGWRVPFDA SRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRLSDSE LVGNYLAEDLVNPKTGEIFAEAGDELTGKPIKGDDKEIELFVGATPMKAI LEQGYKELPLLDIDHVNVGPYIRNTLSADKNMTREDALFDIYRVMRPGEP PTLDSAQNMFQSLFFDAERYDLSAVGRVKMNMRLDLDAPDTHRTLRKEDI LAVIKTLVGLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRMERAI KERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEIT HKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSL ATFARVNKYGFVETPYRKVKEGRVTDEVVYLSAMEEGRYAVAQANISLDA KGRFTDDLIVCRAGGTRDVVLIPADQVDYMDVSPKQLVSVAAALIPFLEN DDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARDSGAAIAARRTGV IDQIDATRIVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVKVG DKVAKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVK EDVFTSIHIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIG AEVRAGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGV QGTIVEVRVFNRHGVDKDERALAIEREEIERLAKDRDDEQAILDRNVYGR LADLLDNRQGVAGPKGFKKDTKITRAVLEEYPKSQWWLFASPNDKLMAEI EAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQ PGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQ ILETHLGWACAGMGKKIGQTIDAYYQRQDLKPLRETLKKIYGDDETIKSL DDGELIELGRNLSHGVPIATPVFDGAKEADIEEMLKLAGFDASGQSTVYD GRTGDEFDRKVTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQ FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDT FEAGIPESFNVLVKEMRSLGLNVDLHNSKLGVPPPAEAAE >RPB_0245 conserved hypothetical protein MAEDTLTTTNAGIAAHGAERLPSVDVDTYNIELKDDDGFLGDRASKGAFQ RMLDASRKPLRKTGDDPLGKKPTEEISKGALDEILNGDDVHAAALVHGAI EEFAQELAYVTGRFLKTKAWADTECIVVGGGFRQGRVGELAIARTDILLK SEGLKVDLVPIRFDPDEAGLIGCLHLAPSWIFEGHDSILAVDIGGSNIRC GVVETGWKKARDLSKASVWKVDLWRHAEDEPTREGAVKRLTKMLQGLIAD AEKEGFKLAPFIGISCPGVINSDGTIEKGAQNLPGNWESSRFHLPRSLLE GIPTIGDHDTAILMHNDGVAQGLSEVPFMQDFERWGVLTIGTGLGNARFT NRKTKEKGKKAKEKDKDDKPSDKQKDKERKEKA >RPB_0688 transcriptional regulator, XRE family MIRKHIMSLHPDPLLKELGLSFRTARLAAGLSQEEIALRANISRPRYRDI ETGAAAARATTLINIARALGLEMMLIPQAMVPAIQSMLQPAADDDDRPAF TSDAEEEERP >RPB_4200 transcriptional regulator, XRE family MAGESGKKLFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPV TAQILLRLAETYDLDLRDLATADEDRFFAELNEIFSDPLFRQIDLPKQEL RDLAELCPGVTHSLQRLYAAYTEARRGETLVAAQMADRDEGTRFEANPIE RVRDLIEANRNYFPELEQAAEAVRDELNVGSQEVYGALADRLRERHSITT RIMPVDVMRETLRRFDRHRRQLLISELVDSQGRAFQAAFQTGLTEYGSVI DGIVNRAGALDEPARRLYRITLGNYFAAALMMPYAAFHAAAEQLSYDVNV LAQRFNAGFEQVCHRLTTLQRPTARGVPFFLLRVDNAGNVSKRFSSGTFP FSKFGGTCPLWNVHSTFDTPDRLLKQVIELPDGSRYFSIAQMVRRPVAPH PQPQPRFAIGLGCEIRHASKLTYAAGMDLEKAEGTPIGVNCRLCERENCS QRAEPPITRTLILDENTRRASSFAFSNAREL >RPB_4131 sigma 70 (RpoD) MASKAKTVQLKDKEKDDKADAPEKDSADAPSPLLDLSDAAVKKMIKQAKK RGFVTFDQLNEVLPSDTTSPEQIEDIMSMLSDMGINVSEAEESDSEDEDA KDEAEEEPDNDLVEVTQKAVTETKKSEPGERTDDPVRMYLREMGTVELLS REGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDII DLEATYAGPDAKANMNPAMAEGAGEEASAEGEADAGAPAHVAPPAAPPTA TPFRPAQQRSAPAAAPAAGEGGGEGAAEGDMDDDEFENQMSLAAIEAELK PKVVETFDKIADNYKKLRKLQEQDIANQLESASQGPSLSPSQERKYKKLK DEIIVEVKSLRLNQARIDSLVEQLYDINKKLVSFEGRLLRLGDSHGVARE DFLRNYQGSELDPRWLNRVSKLSAKGWKNFVHFEKDRIRELRQEIQSMAA LTGLEIGEFRKIVHSVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGL QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART IRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLK IAKEPLSLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLA SLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK HPSRSRKLRSFLDN >RPB_2508 GCN5-related N-acetyltransferase MYDALIAYLTGSKGTIRSLINQELPLLRDHLLRLDAESRRDRFNGYADEG FIDRYAMKCGGDGTIIIAFFAEDGTVHAAAELHQPDLSTDSLPEIAFSVE GHLRRKGIGSILFKQLMEVARSLGYENLRITTGSQNQAMRALANKFGAHL TFRQGESTGTIDLKQEASGANQPTIEIPAGAASALIDFNQACWNLFLRMS GINRAA >RPB_0727 transcriptional regulator, LysR family MIDKLELLLALAKERHFGRAAEACGVTQPTMSTSIKQLEEILGVMLVQRG SRFLGFTPEGERTLDWARRIVGDTRAMRQDIGAMKGELSGELRIAAIPTV LGMVASLTTPFRARYPNVRFSVLSCTSSEVLGLLENLEADAGLTYIENEP LGKVHSIPLYQESYRLITSPDGMFGDRDQVTWKEVGQVPLCLLTPNMQNR RIIDRALREAGTEAHPTLTSNSIIVLYTHVKTGRWASVMPAKLAETLGLG DGVRTIPIVDPMVSYSIGLVVPQREPYTPQVAALMQTARDIAPTLQS >RPB_4391 sigma-24 (FecI-like) MSSATELLNIFGTEQGHLQRLVRRITGDAHTAEDVVHETFIKLMNRDVGQ RDVGLVVTTARNLARDAMRAERVRTSYAESVSREQLQPGVVGPEDAVASR MDLDALLRSLQTLPRRTQRIFLLSRVDGMTYPQIARKLGVSVSTVEKEMI SALEFCRNWRRRRETL >RPB_2557 transcriptional regulator, TetR family MLTMIPTMMPNRHAAHDRPMAPPASDTRARMIEAAIEVFGSVGYDGATTR QLAERAGVNQAAIPYHFGGKRELYLAAAQAIADYMRSRIEPLIDTLRTAS VDPVGHIDAVVMRFFQFIAGNAEPEAWTVFFVRCERDADDAFRIIYYQSV ARFQSALIAEVAAATGRSPNDEDLKIRTAIVLGAISNFRTLRNVMLSSLG WDTFDAERTRKLEIAVRRLAQAELFGIRAEHEPIAEHSPRSAGSHPSPTA >RPB_2985 DEAD/DEAH box helicase MSFNNLGLSDKVLAAVAASGYTTPTPIQEQAIPHVLARRDVLGIAQTGTG KTAAFVLPMLTMLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQK LNVALLIGGVSFGDQDLKLTRGVDVLIATPGRLLDHTERGGLLLTGVEML IIDEADRMLDMGFIPDIERVCKLVPFTRQTLFFTATMPPEIRRVTETFLH NPEKIEVSKPASTAVTVAQSQVACGREPHEKRETLRSLIRAATDLQNAII FCNRKREVALLAKSLQKHGFSVGALHGDMDQSARTAALDQFRKGELPILV ASDVAARGLDIPEVSHVFNFDVPHHPDDYVHRVGRTGRAGRLGTAISIVA PSDQKSIAAIEKLIGKEIPRVDAGPVGEADREQAEDTDRPARSSRRSSES RSREVRGEDRPARESRGPRREPRGEGRGEARPAREPREARAPVEAREAPR EVREPREPREARKPRREPRNAPAAPAAAPAAHASFGSAPPARDLSSEPGD HSHLPAFLLRPVRARG >RPB_2286 DNA-directed RNA polymerase, subunit beta-prime MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTF KPERDGLFCARIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRR ERMGHIELAAPVAHIWFLKSLPSRIGQLLDMTLKDLERILYFEYYVVLEP GLTDLKERQLLSEEEYLRAQDQYGQDSFTAMIGAEAIRELLKGLELEKID AQLRVEMAETDSDIKHKKLAKRLKIVEAFRFSGNKPEWMILTVVPVIPPD LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVD YSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAK KLVEKERPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQ LHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGQP IIVPSQDIVLGLYYLSILREGLPGEGKVFGDLAELEHALFSKVIHLHTKI KYRWDSLDDEGKPYQRLIETTAGRILLGQVLPKSVKLPFEVINKLMTKRE ISSVIDQVYRHCGQKETVIFCDRIMALGFFNAFKAGISFGKDDMVVPASK WKIVDTTRTLAKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKE ISAVRKNASGAETQVNSIYMMAHSGARGSPAQMRQLAGMRGLMAKPSGEI IETPIISNFKEGLSVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVA QDCIITQDDCGTSLGIKMRAIIDAGTVVASLGSRILGRTAGEDVRDPQTN EVIVKKGQLMEERDVEAIHQAGVQEVKIRSALTCELVNGICGKCYGRDLA RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFE GKVVIKNKAIARNGENHSVAMVRNMVVAIVDPDGTERATHRIQYGARMHV DEGDTVKRGQRIAEWDPYSRPVLTEVEGTIDFEDLVEDQSISETLDESTG IAKRIVIDWRSTRGGADLRPAIVVKGKDGKVLKLARGGDARYMLSVDAIL SVDVGAKVKPGDILARISTESAKTRDITGGLPRVAELFEARKPKDAAIIA EIAGTIRFGRDYKNKRRISIEPMDSEEEAREYLIPKGKHIHLQDGDIVEK GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVI VRQMLQKVEITDQGETDMISGEQIDKIEFDQLNAKARDEGKKIATGTPVL LGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVGRL IPAGTGASMAKLREVAMKRDRMILDEREKQATIVPPAAPEAEPLALPPVE >RPB_2418 exoribonuclease R MSKTRDDKFPDKATLLAFIRAHPGKVGTREIAREFGLKNADRAELKRRLK ELSDDGAIRKSGRRKVAEPATLPPTLLADITARDSDGELIATPSEWDEQD GEPPKIRIHTPRRPKPGTAAGLGDRALLHVEPAEAPEQGPAYVGRVIRVL DRGKPRILGIFRATPQGGGRLVPVDKKQAGRELNIAPHDAGGAQDGDLVS VDLIRSRGYGLSSGRVKERLGSLATEKAVSLIAIHSHDIPQEFSTTALRE SEAAEPATLKGREDWRELPLVTIDPPDAKDHDDAVHAEPDPDPNNKGGVI LHVAIADVAYYVRPDSALDRDALRRGNSVYFPDRVVPMLPERISNDLCSL KPGEPRGALAVRMVIGADGRKRSHSFHRVLMRSAAKLNYAQAQAAIDGRP DDTTGPLLDTILKPLYDAYAIVKRGRDERDPLDLDLPERKIILKPDGTVD RVIVPERLDAHKLIEEFMILANVAAAEMLEKKALPLIYRVHDEPSVEKVH NLVDFLKTLDLSFAKGGALKPAQFNRILAMVKGEDAEPLVNEVVLRSQAQ AEYASENYGHFGLNLRRYAHFTSPIRRYADLVVHRALIRALNLGDGALPQ TETVETLAEVAAQISLTERRAMKAERETVDRLIAHHLADRIGATFQGRVS GVTKAGLFVKLSDTGADGLIPIRTLGDEYYNYDETRHALIGSRSGAMHRL GDVVDVRLVEAAPVAGALRFELLSESRSVARGPRKGAYKGRAKAVEPAKG GAKIGRSARSKAGKPKAAKPSKRKANKPGKGTR >RPB_4667 two component transcriptional regulator, winged helix family MSHSPHIIVVDDEAPAREMVGDYLRMHGFAVTLCDGGKSLRAEIETKVPD LVVLDLNMPEEDGLSIIRDLKAKTNVPVIMLTATASPIDRVVGLELGADD YVAKPCELRELMARIRSVLRRSAPRPTAAPASAAAPTKAAPEQLVRFGTK WLDLEAQALRDDDGNEHPLTASEFGLLKVFAANPKRVLSRERLLELANAR DAEAFDRAVDLRIMRIRRKIEPDPTKPAVIRTIRGGGYLFSPAAERP >RPB_3968 transcriptional regulator, LysR family MSRQFKAVSIRQLRALAALAETGSITAAANRLHLTQPAVTLQLRNLQSLA DIPLIQRRSDGMQLTDAGLEVLALCERIEAAISACETSLDMIAGKTAGRI SIGAVSTAKYFVPFAISSFLKRHPKIDVRLSIGNRQDIGAALRGYDLDIA IMGRPPVDLDVETHLIGDHPHVIIAPTAHRLARKQDIALAELADETFLTR EPGSGTRSLMEQLFGNAGIRPNIGMEMASNETIKQAVIAGLGMAFLSAHT VATELDERRLVILDVVGLPVVRQWFVVTRKDKVLLPPARAMLDFLKAEAS HFLPRTDRRMRLTRPSTRGKRD >RPB_2079 transcriptional regulator, GntR family MAKSPRAPDRGAVIYKALWHAIIEQALQPGAKLPEDAIGEKFGASRTIVR AALGRLAAEGLVELRRNRGAAVATPSWNEARDIFDVRIGLERLVVARLAG RLTREQIRQLEQHVDAEQQARGSNVPLSIRLATAFHIRLAEMTGNPVLAR YVSEVASRCGLILALYSRPHSADCAVSEHRAIIAALASGDATRATALMDH HLDAVAERALIVPHAPEARDIQDILSPYAKEAALPKTRKAGAKKR >RPB_3101 transcriptional regulator, TetR family MARRSSDPARVREKILKLAMEEFARTGFDGARVDRIAERSKVSKNMLYYY FKSKEGLFVAALERMYEEVRDQQRELSVRAHDPILAMKQLVEHTFQALES NPNAIRLMNEENKQRGRFLRKSKRIRDLYNPLVETISFILERGRVEGVFR PGLDSAVVYMTLSSLCYHYLSNRYTLEIALGKDLASAASRKAWVEHVGNI VLLYCTAEVPSTTAAKTAVMRQRATSDADA >RPB_1683 transcriptional regulator, TetR family MAAQPNPVLATRLPAVKNSTADKLLVAAGELMIERNSVEISLSDIAQKSG VNAALVKYHFGNKDGLLLALLERDAATEMTNLDYLLEQPLSATTKMKLHI AGIIKAYHQFPYLNRLIHYLLHGSNREAADEVTKFFVGPLLDFHRRLIAE GVAAGEFRNVDPVLFYTTLIGACDHLFFGRQTMMRAAGVGPVTDEVCRAY VGHIELIILGGLLLPKGGAKPKQTAAG >RPB_0381 two component transcriptional regulator, winged helix family MPNARKILIVDDDTDLRDALVEQLSLHEEFEASAVDTGAKGVQSAKANSP DLVLMDVGLPDTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGA NDYVAKPFRFAVLLARIRAQLRQHEASEDAVFTVGPYSFRPGSKMLTGAN AKKVRLTEKETAILRFLYRAGQAPVSRETLLQEVWGYNSGVTTHTLETHI YRLRQKIEKDAANPEILVTEAGGYKLVP >RPB_1961 two component transcriptional regulator, winged helix family MSTAPPHILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRV DLVVLDVMLPGEDGLSLCRRVRASSPLPIIMLTARGEDVDRILGLEMGAD DYLAKPFNPRELLARIRSVLRRQSLAQTASATSGATALTFLGWRIDFRLR ELRNPDGALVAMTSAEFDLLQAFCERPGRVLSREALLDLTHGRNAGSFER SIDVLVSRIRRKIEPDPQSVSIIKTVRSGGYMFTPAVETV >RPB_4264 transcriptional regulator, TetR family MTDRAALLPLLGEVFRAHGYEGASLALISQATGLGKGSLYHFFPGGKTQM AGEVLAEIDGWFETRIFAPLRSSDDPRAAIVAMLAGVDDYFRSGHRVCLV GVIALGHARDEFAEPVNDYFARWHDALAAALRRGGIGASLARKRSEDAVL TIQGALVLARARDDAKIFTRALAELKTRLLA >RPB_4504 transcriptional regulator, LysR family MTKLPDFEALAIFAKVVELRSFAATAAELALSKATVSKAVTRLEARLGAR LFNRTSRRLALTDAGQRLAERAAQLLADGEAAESEALAQSAAPRGLVRLA VPMTFGVKVIAPLLPDFLAAYPEVSIDLHLSDAMVDLIGEGFDAGVRIAS LPDSSLVARRLCAMPRYTVASKAYLAQHGRPTHPMHLAAHRCFGYAYLST PNVWTYTNAEGEQASVRPSGPLRVNNGEAVLPAVIAGLGIADLPEFIVGD AIAAGAVEVILQGWHQREGSVHLVMPPGGPRPARVEVLAAFLADRLGPKR RLPS >RPB_4449 two component transcriptional regulator, LuxR family MDAKSPNPPHGSRLRIFLADDHPIVLSGMKMLVAEDPELELVGEANDGPK ALRRAIELRPDVAVFDLSMPGMNGIDVTEKYLEAQPKARVLVLSVHEDGA YLRRLLKMGVGGYILKRSATDELIRGIHAVAAGGLYLDPAIAGRAIGRGV QQVSIDSETSPISELSTRELEVLRLASVGHSNKVISAKLQVGSKSVETYK ARAMDKLGFTNRVELIRFALSMGWLESAEP