Gene list
Applied filters:
COG category: Nucleotide transport and metabolism
Gene type: CDS
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 82
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Pseudomonas syringae pv. tomato str. DC3000, DC3000 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | PSPTO4144 | deoxycytidine triphosphate deaminase, putative | RecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; | chromosome | CDS | 4671393 | 567 | - | 0.574956 |
NA | PSPTO5051 | Ham1 protein | RecName: Full=Non-canonical purine NTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; | chromosome | CDS | 5750148 | 594 | + | 0.661616 |
NA | PSPTO3668 | allantoicase | RecName: Full=Probable allantoicase; EC=3.5.3.4; AltName: Full=Allantoate amidinohydrolase; | chromosome | CDS | 4136051 | 996 | + | 0.60743 |
NA | PSPTO0439 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 483226 | 1389 | + | 0.645788 |
NA | PSPTO4157 | dihydroorotase, homodimeric type | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 4684726 | 1044 | + | 0.618774 |
NA | PSPTO3459 | CTP synthase domain protein | SubName: Full=CTP synthase domain protein; | chromosome | CDS | 3901204 | 735 | - | 0.636735 |
NA | PSPTO1871 | cytosine/purine/uracil/thiamine/allantoin permease family protein | SubName: Full=Cytosine/purine/uracil/thiamine/allantoin permease family protein; | chromosome | CDS | 2045768 | 1452 | - | 0.615014 |
NA | PSPTO4123 | purine nucleoside permease, putative | SubName: Full=Purine nucleoside permease, putative; | chromosome | CDS | 4647679 | 1032 | + | 0.619186 |
NA | PSPTO1462 | mutT/nudix family protein | SubName: Full=MutT/nudix family protein; | chromosome | CDS | 1609228 | 552 | - | 0.588768 |
NA | PSPTO0600 | HIT family protein | SubName: Full=HIT family protein; | chromosome | CDS | 657771 | 339 | - | 0.554572 |
NA | PSPTO3750 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4237660 | 624 | - | 0.586538 |
NA | PSPTO4795 | AMP nucleosidase | SubName: Full=AMP nucleosidase; | chromosome | CDS | 5434554 | 1464 | - | 0.629781 |
NA | PSPTO3273 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3698579 | 501 | + | 0.586826 |
NA | PSPTO3986 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4491494 | 432 | - | 0.56713 |
NA | PSPTO5171 | Atz/Trz family protein | SubName: Full=Atz/Trz family protein; | chromosome | CDS | 5887357 | 1365 | - | 0.63663 |
NA | PSPTO2373 | inosine/uridine-preferring nucleoside hydrolase | SubName: Full=Inosine/uridine-preferring nucleoside hydrolase; | chromosome | CDS | 2624219 | 1026 | + | 0.599415 |
NA | PSPTO1743 | hydrolase, Atz/Trz family | SubName: Full=Hydrolase, Atz/Trz family; | chromosome | CDS | 1910654 | 1332 | - | 0.62988 |
NA | PSPTO1615 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1770750 | 873 | + | 0.486827 |
NA | PSPTO0933 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1011024 | 999 | + | 0.600601 |
NA | PSPTO1457 | cytidine/deoxycytidylate deaminase family protein | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 1602041 | 510 | + | 0.639216 |
NA | PSPTO4975 | cytosine/purine/uracil/thiamine/allantoin permease family protein | SubName: Full=Cytosine/purine/uracil/thiamine/allantoin permease family protein; | chromosome | CDS | 5645168 | 1290 | - | 0.62093 |
NA | PSPTO2670 | mutT/nudix family protein | SubName: Full=MutT/nudix family protein; | chromosome | CDS | 2966404 | 564 | - | 0.599291 |
NA | PSPTO0318 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 345431 | 321 | - | 0.557632 |
NA | PSPTO3506 | phosphorylase, family 2 | RecName: Full=Probable S-methyl-5-thioinosine phosphorylase; EC=2.4.2.44; AltName: Full=5-methylthioinosine phosphorylase; Short=MTI phosphorylase; Short=MTIP; | chromosome | CDS | 3958536 | 741 | - | 0.62753 |
NA | PSPTO0935 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1013292 | 1134 | + | 0.62522 |
NA | PSPTO5041 | dihydroorotase, multifunctional complex type | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 5741873 | 1272 | + | 0.654874 |
NA | PSPTO0772 | xanthine/uracil permease family protein | SubName: Full=Xanthine/uracil permease family protein; | chromosome | CDS | 821385 | 1398 | - | 0.606581 |
NA | PSPTO2063 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2243781 | 729 | + | 0.56653 |
NA | PSPTO3661 | xanthine dehydrogenase, C-terminal subunit | SubName: Full=Xanthine dehydrogenase, C-terminal subunit; | chromosome | CDS | 4127968 | 2379 | + | 0.603615 |
NA | PSPTO2284 | membrane protein, putative | SubName: Full=Membrane protein, putative; | chromosome | CDS | 2525232 | 1542 | - | 0.580415 |
NA | PSPTO3660 | xanthine dehydrogenase, N-terminal subunit | SubName: Full=Xanthine dehydrogenase, N-terminal subunit; | chromosome | CDS | 4126521 | 1455 | + | 0.6 |
NA | PSPTO2474 | DNA/RNA non-specific endonuclease | SubName: Full=DNA/RNA non-specific endonuclease; | chromosome | CDS | 2732375 | 951 | - | 0.596215 |
NA | PSPTO2331 | deoxyguanosinetriphosphate triphosphohydrolase, putative | SubName: Full=Deoxyguanosinetriphosphate triphosphohydrolase, putative; | chromosome | CDS | 2586250 | 1332 | - | 0.631381 |
add | PSPTO0757 | adenosine deaminase | RecName: Full=Adenine deaminase; Short=ADE; EC=3.5.4.2; AltName: Full=Adenine aminohydrolase; Short=AAH; | chromosome | CDS | 804854 | 954 | - | 0.600629 |
adk | PSPTO1509 | adenylate kinase | RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; | chromosome | CDS | 1668011 | 648 | + | 0.583333 |
allA | PSPTO3669 | ureidoglycolate hydrolase | RecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; | chromosome | CDS | 4137185 | 513 | + | 0.582846 |
apt | PSPTO1990 | adenine phosphoribosyltransferase | RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; | chromosome | CDS | 2175076 | 549 | - | 0.564663 |
atzB | PSPTO0765 | hydroxydechloroatrazine ethylaminohydrolase | SubName: Full=Hydroxydechloroatrazine ethylaminohydrolase; | chromosome | CDS | 813434 | 1356 | - | 0.620944 |
carA | PSPTO4502 | carbamoyl-phosphate synthase, small subunit | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome | CDS | 5072095 | 1137 | - | 0.58927 |
carB | PSPTO4501 | carbamoyl-phosphate synthase, large subunit | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; | chromosome | CDS | 5068738 | 3222 | - | 0.595593 |
cdd | PSPTO1602 | cytosine deaminase | SubName: Full=Cytosine deaminase; | chromosome | CDS | 1758068 | 438 | + | 0.577626 |
cmk | PSPTO1749 | cytidylate kinase | RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; | chromosome | CDS | 1920306 | 690 | + | 0.594203 |
cyaA | PSPTO0230 | adenylate cyclase, class I | SubName: Full=Adenylate cyclase, class I; | chromosome | CDS | 249596 | 2847 | - | 0.600632 |
deoC | PSPTO0973 | deoxyribose-phosphate aldolase | SubName: Full=Deoxyribose-phosphate aldolase; | chromosome | CDS | 1058084 | 780 | + | 0.624359 |
dut | PSPTO0084 | deoxyuridine 5'triphosphate nucleotidohydrolase | RecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; | chromosome | CDS | 106375 | 456 | - | 0.614035 |
gmk | PSPTO0075 | guanylate kinase | RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; | chromosome | CDS | 97382 | 645 | - | 0.587597 |
guaA | PSPTO1450 | GMP synthase | RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; | chromosome | CDS | 1589700 | 1578 | + | 0.602662 |
guaD | PSPTO3663 | guanine aminohydrolase | SubName: Full=Guanine aminohydrolase; | chromosome | CDS | 4131205 | 1314 | + | 0.605023 |
hpt | PSPTO1131 | hypoxanthine phosphoribosyltransferase | SubName: Full=Hypoxanthine phosphoribosyltransferase; | chromosome | CDS | 1243387 | 558 | + | 0.594982 |
ndk | PSPTO1430 | nucleoside diphosphate kinase | RecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; | chromosome | CDS | 1568159 | 426 | + | 0.556338 |
nrdA | PSPTO1671 | ribonucleoside-diphosphate reductase, alpha subunit | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 1840004 | 2913 | - | 0.614143 |
nrdB | PSPTO1661 | ribonucleoside-diphosphate reductase, beta subunit | RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; | chromosome | CDS | 1830031 | 1248 | - | 0.580929 |
pcaB | PSPTO2341 | 3-carboxy-cis,cis-muconate cycloisomerase | SubName: Full=3-carboxy-cis,cis-muconate cycloisomerase; | chromosome | CDS | 2594472 | 1362 | + | 0.649046 |
ppx | PSPTO5249 | exopolyphosphatase | SubName: Full=Exopolyphosphatase; | chromosome | CDS | 5967782 | 1503 | + | 0.60346 |
prsA | PSPTO1104 | ribose-phosphate pyrophosphokinase | RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; Short=P-Rib-PP synthase; Short=PRPP synthase; | chromosome | CDS | 1218509 | 942 | - | 0.549894 |
purA | PSPTO4937 | adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome | CDS | 5595509 | 1293 | - | 0.591647 |
purB | PSPTO3360 | adenylosuccinate lyase | SubName: Full=Adenylosuccinate lyase; | chromosome | CDS | 3797825 | 1371 | + | 0.586433 |
purC | PSPTO3950 | phosphoribosylaminoimidazole-succinocarboxamidesynthase | RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; | chromosome | CDS | 4458800 | 711 | - | 0.559775 |
purD | PSPTO4867 | phosphoribosylamine--glycine ligase | RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; | chromosome | CDS | 5512819 | 1296 | + | 0.60108 |
purE | PSPTO5494 | phosphoribosylaminoimidazole carboxylase, catalytic subunit | RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; | chromosome | CDS | 6260019 | 507 | - | 0.613412 |
purF | PSPTO3811 | amidophosphoribosyltransferase | RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; | chromosome | CDS | 4318919 | 1509 | - | 0.587144 |
purH | PSPTO4866 | phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | RecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; | chromosome | CDS | 5511016 | 1605 | + | 0.618069 |
purK | PSPTO5493 | phosphoribosylaminoimidazole carboxylase, ATPase subunit | SubName: Full=Phosphoribosylaminoimidazole carboxylase, ATPase subunit; | chromosome | CDS | 6258927 | 1083 | - | 0.605725 |
purL | PSPTO1459 | phosphoribosylformylglycinamidine synthase | RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; Short=FGARAT; AltName: Full=Formylglycinamide ribotide synthetase; | chromosome | CDS | 1604253 | 3897 | + | 0.609956 |
purM | PSPTO1700 | phosphoribosylformylglycinamidine cyclo-ligase | RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; | chromosome | CDS | 1869790 | 1059 | - | 0.619452 |
purN | PSPTO1699 | phosphoribosylglycinamide formyltransferase | SubName: Full=Phosphoribosylglycinamide formyltransferase; | chromosome | CDS | 1869140 | 651 | - | 0.617512 |
purT | PSPTO1468 | phosphoribosylglycinamide formyltransferase 2 | RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; | chromosome | CDS | 1612530 | 1182 | + | 0.622673 |
purU-1 | PSPTO0456 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; | chromosome | CDS | 499114 | 858 | - | 0.587413 |
purU-2 | PSPTO2454 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; | chromosome | CDS | 2710939 | 867 | - | 0.569781 |
purU-3 | PSPTO4314 | formyltetrahydrofolate deformylase | SubName: Full=Formyltetrahydrofolate deformylase; | chromosome | CDS | 4864702 | 852 | - | 0.579812 |
pyrB | PSPTO5040 | aspartate carbamoyltransferase | RecName: Full=Aspartate carbamoyltransferase; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; | chromosome | CDS | 5740872 | 1005 | + | 0.620896 |
pyrD | PSPTO2309 | dihydroorotate dehydrogenase | RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; | chromosome | CDS | 2556168 | 1032 | + | 0.621124 |
pyrE | PSPTO0080 | orotate phosphoribosyltransferase | RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; | chromosome | CDS | 101265 | 642 | + | 0.607477 |
pyrF | PSPTO2028 | orotidine 5-phosphate decarboxylase | RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; | chromosome | CDS | 2215104 | 639 | + | 0.635368 |
pyrG | PSPTO1552 | CTP synthase | RecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; | chromosome | CDS | 1714734 | 1632 | + | 0.596814 |
pyrH | PSPTO1536 | uridylate kinase | RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; | chromosome | CDS | 1695560 | 744 | + | 0.573925 |
pyrR | PSPTO5039 | pyrimidine operon regulatory protein PyrR | RecName: Full=Bifunctional protein PyrR; Includes: RecName: Full=Pyrimidine operon regulatory protein; Includes: RecName: Full=Uracil phosphoribosyltransferase; Short=UPRTase; EC=2.4.2.9; | chromosome | CDS | 5740347 | 513 | + | 0.631579 |
thyA | PSPTO5282 | thymidylate synthase | RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; | chromosome | CDS | 6006968 | 972 | - | 0.605967 |
tmk | PSPTO3827 | thymidylate kinase | RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=dTMP kinase; | chromosome | CDS | 4335222 | 633 | - | 0.636651 |
upp | PSPTO1130 | uracil phosphoribosyltransferase | RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; | chromosome | CDS | 1242541 | 639 | - | 0.605634 |
uraA | PSPTO1129 | uracil transporter | SubName: Full=Uracil transporter; | chromosome | CDS | 1241259 | 1221 | - | 0.601147 |
xpt | PSPTO0112 | xanthine phosphoribosyltransferase | RecName: Full=Xanthine phosphoribosyltransferase; Short=XPRTase; EC=2.4.2.22; | chromosome | CDS | 131808 | 570 | - | 0.585965 |