Gene list
Applied filters:
COG category: Nucleotide transport and metabolism
Gene type: CDS
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 79
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Shigella flexneri 2a str. 2457T, 2457T | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | S2015 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1937878 | 459 | + | 0.470588 |
add | S1780 | adenosine deaminase | RecName: Full=Adenosine deaminase; EC=3.5.4.4; AltName: Full=Adenosine aminohydrolase; | chromosome | CDS | 1718587 | 1002 | + | 0.53493 |
adk | S0426 | adenylate kinase | RecName: Full=Adenylate kinase; Short=AK; EC=2.7.4.3; AltName: Full=ATP-AMP transphosphorylase; AltName: Full=ATP:AMP phosphotransferase; AltName: Full=Adenylate monophosphate kinase; | chromosome | CDS | 433501 | 645 | + | 0.516279 |
amn | S2160 | AMP nucleosidase | SubName: Full=AMP nucleosidase; | chromosome | CDS | 2047751 | 1455 | + | 0.494845 |
apt | S0421 | adenine phosphoribosyltransferase | RecName: Full=Adenine phosphoribosyltransferase; Short=APRT; EC=2.4.2.7; | chromosome | CDS | 427744 | 552 | + | 0.536232 |
carA | S0031 | carbamoyl-phosphate synthetase, glutamine (small) subunit | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome | CDS | 28567 | 1149 | + | 0.534378 |
carB | S0032 | carbamoyl-phosphate synthase large subunit | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; | chromosome | CDS | 29733 | 3222 | + | 0.557107 |
cdd | S2357 | cytidine/deoxycytidine deaminase | RecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA; | chromosome | CDS | 2234089 | 885 | + | 0.544633 |
cmk | S0970 | cytidylate kinase | RecName: Full=Cytidylate kinase; Short=CK; EC=2.7.4.25; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase; | chromosome | CDS | 948961 | 684 | + | 0.538012 |
cpdB | S4538 | 2:3-cyclic-nucleotide 2-phosphodiesterase | SubName: Full=2:3-cyclic-nucleotide 2-phosphodiesterase; | chromosome | CDS | 4443609 | 1944 | + | 0.49537 |
cyaA | S3878 | adenylate cyclase | RecName: Full=Adenylate cyclase; EC=4.6.1.1; AltName: Full=ATP pyrophosphate-lyase; AltName: Full=Adenylyl cyclase; | chromosome | CDS | 3771245 | 2547 | - | 0.522968 |
dcd | S2253 | 2-deoxycytidine 5-triphosphate deaminase | RecName: Full=Deoxycytidine triphosphate deaminase; Short=dCTP deaminase; EC=3.5.4.13; | chromosome | CDS | 2130034 | 582 | - | 0.599656 |
deoA | S4685 | thymidine phosphorylase | RecName: Full=Thymidine phosphorylase; EC=2.4.2.4; AltName: Full=TdRPase; | chromosome | CDS | 4577029 | 1323 | + | 0.554044 |
deoC | S4684 | 2-deoxyribose-5-phosphate aldolase | RecName: Full=Deoxyribose-phosphate aldolase; Short=DERA; EC=4.1.2.4; AltName: Full=2-deoxy-D-ribose 5-phosphate aldolase; AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; | chromosome | CDS | 4576123 | 780 | + | 0.551282 |
deoD | S4687 | purine-nucleoside phosphorylase | RecName: Full=Purine nucleoside phosphorylase DeoD-type; Short=PNP; EC=2.4.2.1; | chromosome | CDS | 4579684 | 720 | + | 0.529167 |
dgt | S0155 | deoxyguanosine triphosphate triphosphohydrolase | RecName: Full=Deoxyguanosinetriphosphate triphosphohydrolase; Short=dGTP triphosphohydrolase; Short=dGTPase; EC=3.1.5.1; | chromosome | CDS | 170383 | 1518 | + | 0.47892 |
dut | S4089 | deoxyuridinetriphosphatase | RecName: Full=Deoxyuridine 5-triphosphate nucleotidohydrolase; Short=dUTPase; EC=3.6.1.23; AltName: Full=dUTP pyrophosphatase; | chromosome | CDS | 3990556 | 459 | - | 0.546841 |
gmk | S4081 | guanylate kinase | RecName: Full=Guanylate kinase; EC=2.7.4.8; AltName: Full=GMP kinase; | chromosome | CDS | 3982890 | 624 | - | 0.490385 |
gppA | S3907 | guanosine pentaphosphatase, exopolyphosphatase | RecName: Full=Guanosine-5-triphosphate,3-diphosphate pyrophosphatase; EC=3.6.1.40; AltName: Full=Guanosine pentaphosphate phosphohydrolase; AltName: Full=pppGpp-5-phosphohydrolase; | chromosome | CDS | 3800498 | 1485 | + | 0.535354 |
gpt | S0307 | guanine-hypoxanthine phosphoribosyltransferase | RecName: Full=Xanthine phosphoribosyltransferase; EC=2.4.2.22; AltName: Full=Xanthine-guanine phosphoribosyltransferase; Short=XGPRT; | chromosome | CDS | 306859 | 459 | + | 0.520697 |
guaA | S2725 | GMP synthetase (glutamine-hydrolyzing) | RecName: Full=GMP synthase [glutamine-hydrolyzing]; EC=6.3.5.2; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase; | chromosome | CDS | 2613999 | 1578 | - | 0.539924 |
guaC | S0103 | GMP reductase | RecName: Full=GMP reductase; EC=1.7.1.7; AltName: Full=Guanosine 5-monophosphate oxidoreductase; Short=Guanosine monophosphate reductase; | chromosome | CDS | 111433 | 1044 | + | 0.517241 |
hpt | S0124 | hypoxanthine phosphoribosyltransferase | RecName: Full=Hypoxanthine phosphoribosyltransferase; Short=HPRT; EC=2.4.2.8; | chromosome | CDS | 139001 | 549 | + | 0.499089 |
ndk | S2736 | nucleoside diphosphate kinase | RecName: Full=Nucleoside diphosphate kinase; Short=NDK; Short=NDP kinase; EC=2.7.4.6; AltName: Full=Nucleoside-2-P kinase; | chromosome | CDS | 2627475 | 432 | - | 0.525463 |
nrdA | S2449 | ribonucleoside diphosphate reductase 1, alpha subunit, B1 | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 2341076 | 2286 | + | 0.536308 |
nrdB | S2450 | ribonucleoside-diphosphate reductase 1, beta subunit, B2 | SubName: Full=Ribonucleoside-diphosphate reductase 1, beta subunit, B2; | chromosome | CDS | 2343556 | 1170 | + | 0.506838 |
nrdD | S4514 | anaerobic ribonucleoside-triphosphate reductase | SubName: Full=Anaerobic ribonucleoside-triphosphate reductase; | chromosome | CDS | 4416652 | 2139 | + | 0.535764 |
nrdE | S2889 | ribonucleoside-diphosphate reductase 2, alpha subunit | RecName: Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1; | chromosome | CDS | 2769917 | 2106 | + | 0.519468 |
nrdF | S2890 | ribonucleoside-diphosphate reductase 2, beta chain | RecName: Full=Ribonucleoside-diphosphate reductase subunit beta; EC=1.17.4.1; | chromosome | CDS | 2772032 | 960 | + | 0.486458 |
nrdI | S2888 | hypothetical protein | RecName: Full=Protein NrdI; | chromosome | CDS | 2769495 | 411 | + | 0.559611 |
nupC | S2598 | permease of transport system for 3 nucleosides | SubName: Full=Permease of transport system for 3 nucleosides; | chromosome | CDS | 2494019 | 1203 | + | 0.494597 |
pfs | S0154 | hypothetical protein | RecName: Full=5-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Short=MTA/SAH nucleosidase; Short=MTAN; EC=3.2.2.9; AltName: Full=5-methylthioadenosine nucleosidase; Short=MTA nucleosidase; AltName: Full=S-adenosylhomocysteine nucleosidase; Short=AdoHcy nucleosidase; Short=SAH nucleosidase; Short=SRH nucleosidase; | chromosome | CDS | 169601 | 699 | - | 0.529328 |
ppx | S2695 | exopolyphosphatase | SubName: Full=Exopolyphosphatase; | chromosome | CDS | 2591432 | 1542 | + | 0.510376 |
prsA | S1294 | phosphoribosylpyrophosphate synthetase | RecName: Full=Ribose-phosphate pyrophosphokinase; Short=RPPK; EC=2.7.6.1; AltName: Full=Phosphoribosyl pyrophosphate synthase; | chromosome | CDS | 1257524 | 948 | - | 0.529536 |
purA | S4600 | adenylosuccinate synthetase | RecName: Full=Adenylosuccinate synthetase; Short=AMPSase; Short=AdSS; EC=6.3.4.4; AltName: Full=IMP--aspartate ligase; | chromosome | CDS | 4501665 | 1299 | + | 0.538106 |
purB | S1233 | adenylosuccinate lyase | SubName: Full=Adenylosuccinate lyase; | chromosome | CDS | 1194693 | 1371 | - | 0.524435 |
purC | S2669 | phosphoribosylaminoimidazole-succinocarboxamide synthetase, SAICAR synthetase | RecName: Full=Phosphoribosylaminoimidazole-succinocarboxamide synthase; EC=6.3.2.6; AltName: Full=SAICAR synthetase; | chromosome | CDS | 2563096 | 714 | - | 0.521008 |
purD | S3658 | phosphoribosylglycinamide synthetase, GAR synthetase | RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13; AltName: Full=GARS; AltName: Full=Glycinamide ribonucleotide synthetase; AltName: Full=Phosphoribosylglycinamide synthetase; | chromosome | CDS | 3548328 | 1290 | + | 0.58062 |
purE | S0462 | phosphoribosylaminoimidazole carboxylase; AIR carboxylase, catalytic subunit | RecName: Full=N5-carboxyaminoimidazole ribonucleotide mutase; Short=N5-CAIR mutase; EC=5.4.99.18; | chromosome | CDS | 470916 | 510 | - | 0.594118 |
purF | S2523 | amidophosphoribosyltransferase, PRPP amidotransferase | RecName: Full=Amidophosphoribosyltransferase; Short=ATase; EC=2.4.2.14; AltName: Full=Glutamine phosphoribosylpyrophosphate amidotransferase; Short=GPATase; | chromosome | CDS | 2416290 | 1518 | - | 0.528327 |
purH | S3657 | phosphoribosylaminoimidazolecarboxamide formyltransferase, AICAR formyltransferase; IMP cyclohydrolase | RecName: Full=Bifunctional purine biosynthesis protein PurH; Includes: RecName: Full=Phosphoribosylaminoimidazolecarboxamide formyltransferase; EC=2.1.2.3; AltName: Full=AICAR transformylase; Includes: RecName: Full=IMP cyclohydrolase; EC=3.5.4.10; AltName: Full=ATIC; AltName: Full=IMP synthase; AltName: Full=Inosinicase; | chromosome | CDS | 3546727 | 1590 | + | 0.560377 |
purK | S0461 | phosphoribosylaminoimidazole carboxylase; AIR carboxylase, CO(2)-fixing subunit | SubName: Full=Phosphoribosylaminoimidazole carboxylase AIR carboxylase, CO(2)-fixing subunit; | chromosome | CDS | 469852 | 1068 | - | 0.562734 |
purL | S2776 | phosphoribosylformyl-glycineamide synthetase, FGAM synthetase | RecName: Full=Phosphoribosylformylglycinamidine synthase; Short=FGAM synthase; Short=FGAMS; EC=6.3.5.3; AltName: Full=Formylglycinamide ribotide amidotransferase; AltName: Full=Formylglycinamide ribotide synthetase; | chromosome | CDS | 2670114 | 3888 | - | 0.566358 |
purM | S2692 | phosphoribosylaminoimidazole synthetase, AIR synthetase | RecName: Full=Phosphoribosylformylglycinamidine cyclo-ligase; EC=6.3.3.1; AltName: Full=AIR synthase; AltName: Full=AIRS; AltName: Full=Phosphoribosyl-aminoimidazole synthetase; | chromosome | CDS | 2587499 | 1053 | + | 0.536562 |
purN | S2693 | phosphoribosylglycinamide formyltransferase 1 | SubName: Full=Phosphoribosylglycinamide formyltransferase 1; | chromosome | CDS | 2588551 | 639 | + | 0.535211 |
purT | S1925 | phosphoribosylglycinamide formyltransferase 2 | RecName: Full=Phosphoribosylglycinamide formyltransferase 2; Short=GART 2; EC=2.1.2.-; AltName: Full=5-phosphoribosylglycinamide transformylase 2; AltName: Full=Formate-dependent GAR transformylase; AltName: Full=GAR transformylase 2; | chromosome | CDS | 1863948 | 1179 | + | 0.536896 |
purU | S1318 | formyltetrahydrofolate deformylase | RecName: Full=Formyltetrahydrofolate deformylase; EC=3.5.1.10; AltName: Full=Formyl-FH(4) hydrolase; | chromosome | CDS | 1282714 | 843 | - | 0.47331 |
pyrB | S4507 | aspartate carbamoyltransferase, catalytic subunit | RecName: Full=Aspartate carbamoyltransferase catalytic chain; EC=2.1.3.2; AltName: Full=Aspartate transcarbamylase; Short=ATCase; | chromosome | CDS | 4406917 | 936 | + | 0.534188 |
pyrC | S1146 | dihydro-orotase | RecName: Full=Dihydroorotase; Short=DHOase; EC=3.5.2.3; | chromosome | CDS | 1112214 | 1047 | - | 0.531041 |
pyrD | S1011 | dihydro-orotate dehydrogenase | RecName: Full=Dihydroorotate dehydrogenase (quinone); EC=1.3.5.2; AltName: Full=DHOdehase; Short=DHOD; Short=DHODase; AltName: Full=Dihydroorotate oxidase; | chromosome | CDS | 995800 | 1011 | + | 0.467854 |
pyrE | S4087 | orotate phosphoribosyltransferase | RecName: Full=Orotate phosphoribosyltransferase; Short=OPRT; Short=OPRTase; EC=2.4.2.10; | chromosome | CDS | 3989175 | 642 | + | 0.528037 |
pyrF | S1368 | orotidine-5-phosphate decarboxylase | RecName: Full=Orotidine 5-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase; | chromosome | CDS | 1336071 | 738 | + | 0.5271 |
pyrG | S2989 | CTP synthetase | RecName: Full=CTP synthase; EC=6.3.4.2; AltName: Full=CTP synthetase; AltName: Full=UTP--ammonia ligase; | chromosome | CDS | 2862355 | 1638 | - | 0.514652 |
pyrH | S0164 | uridylate kinase | RecName: Full=Uridylate kinase; Short=UK; EC=2.7.4.22; AltName: Full=Uridine monophosphate kinase; Short=UMP kinase; Short=UMPK; | chromosome | CDS | 182286 | 726 | + | 0.526171 |
pyrI | S4508 | aspartate carbamoyltransferase, regulatory subunit | RecName: Full=Aspartate carbamoyltransferase regulatory chain; | chromosome | CDS | 4407865 | 462 | + | 0.47619 |
tdk | S1324 | thymidine kinase | RecName: Full=Thymidine kinase; EC=2.7.1.21; | chromosome | CDS | 1288459 | 618 | + | 0.423948 |
thyA | S3035 | thymidylate synthetase | RecName: Full=Thymidylate synthase; Short=TS; Short=TSase; EC=2.1.1.45; | chromosome | CDS | 2919404 | 795 | - | 0.513208 |
tmk | S1182 | thymidylate kinase | RecName: Full=Thymidylate kinase; EC=2.7.4.9; AltName: Full=Thymidine monophosphate kinase; AltName: Full=dTMP kinase; Short=TMPK; | chromosome | CDS | 1145732 | 642 | + | 0.537383 |
udk | S2254 | uridine/cytidine kinase | RecName: Full=Uridine kinase; EC=2.7.1.48; AltName: Full=Cytidine monophosphokinase; AltName: Full=Uridine monophosphokinase; | chromosome | CDS | 2130707 | 642 | - | 0.487539 |
udp | S3845 | uridine phosphorylase | RecName: Full=Uridine phosphorylase; EC=2.4.2.3; | chromosome | CDS | 3742980 | 762 | - | 0.536745 |
upp | S2691 | uracil phosphoribosyltransferase | RecName: Full=Uracil phosphoribosyltransferase; EC=2.4.2.9; AltName: Full=UMP pyrophosphorylase; AltName: Full=UPRTase; | chromosome | CDS | 2586564 | 627 | - | 0.5311 |
uraA | S2690 | uracil transport protein | SubName: Full=Uracil transport protein; | chromosome | CDS | 2585189 | 1290 | - | 0.518605 |
ushA | S0432 | UDP-sugar hydrolase (5-nucleotidase) | SubName: Full=UDP-sugar hydrolase (5-nucleotidase); | chromosome | CDS | 441136 | 1653 | + | 0.507562 |
yaaF | S0029 | hypothetical protein | RecName: Full=Non-specific ribonucleoside hydrolase RihC; EC=3.2.-.-; AltName: Full=Purine/pyrimidine ribonucleoside hydrolase; | chromosome | CDS | 26209 | 915 | + | 0.557377 |
ybbT | S0451 | hypothetical protein | RecName: Full=Ureidoglycolate lyase; EC=4.3.2.3; AltName: Full=Ureidoglycolatase; | chromosome | CDS | 461983 | 483 | + | 0.513458 |
ybeK | S0652 | putative tRNA synthetase | RecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihA; EC=3.2.-.-; AltName: Full=Cytidine/uridine-specific hydrolase; | chromosome | CDS | 662340 | 936 | + | 0.511752 |
ycdG | S1079 | putative transport protein | SubName: Full=Putative transport protein; | chromosome | CDS | 1060803 | 1395 | - | 0.541219 |
ycfF | S1187 | hypothetical protein | RecName: Full=HIT-like protein HinT; EC=3.-.-.-; AltName: Full=Purine nucleoside phosphoramidase; | chromosome | CDS | 1152494 | 360 | + | 0.502778 |
yeiJ | S2375 | putative transport system permease protein | SubName: Full=Putative transport system permease protein; | chromosome | CDS | 2254777 | 1251 | - | 0.502798 |
yeiK | S2376 | hypothetical protein | RecName: Full=Pyrimidine-specific ribonucleoside hydrolase RihB; EC=3.2.2.8; AltName: Full=Cytidine/uridine-specific hydrolase; | chromosome | CDS | 2256127 | 942 | - | 0.515924 |
yeiM | S2378 | putative transport system permease protein | SubName: Full=Putative transport system permease protein; | chromosome | CDS | 2257964 | 1251 | - | 0.511591 |
yfhC | S2778 | putative deaminase | RecName: Full=tRNA-specific adenosine deaminase; EC=3.5.4.33; | chromosome | CDS | 2675813 | 537 | - | 0.540037 |
ygfU | S3073 | putative permease | SubName: Full=Putative permease; | chromosome | CDS | 2957303 | 1518 | + | 0.485507 |
yggV | S3149 | putative ribosomal protein | RecName: Full=dITP/XTP pyrophosphatase; EC=3.6.1.19; AltName: Full=Non-canonical purine NTP pyrophosphatase; AltName: Full=Non-standard purine NTP pyrophosphatase; AltName: Full=Nucleoside-triphosphate diphosphatase; AltName: Full=Nucleoside-triphosphate pyrophosphatase; Short=NTPase; | chromosome | CDS | 3027165 | 594 | + | 0.557239 |
yghR | S3232 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3116434 | 759 | - | 0.532279 |
yghS | S3233 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3117224 | 714 | - | 0.495798 |
yghT | S3234 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3118111 | 693 | + | 0.473304 |
yicE | S4075 | putative transport protein | RecName: Full=Xanthine permease XanP; | chromosome | CDS | 3974740 | 1392 | - | 0.550287 |
yicP | S3972 | probable adenine deaminase (synthesis xanthine) | RecName: Full=Adenine deaminase; Short=Adenase; Short=Adenine aminase; EC=3.5.4.2; | chromosome | CDS | 3865828 | 1767 | + | 0.546689 |