Gene list
Applied filters:
COG category: Amino acid transport and metabolism
Gene type: CDS
Gene type: CDS
Gene type: CDS
Genomic element: chromosome
Number of genes found: 70
Hide UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Tropheryma whipplei TW08/27, TW08/27 | |||||||||
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Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | TW011 | putative glutamine amidotransferase | SubName: Full=Putative glutamine amidotransferase; | chromosome | CDS | 11399 | 639 | + | 0.507042 |
NA | TW611 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 694598 | 357 | - | 0.417367 |
NA | TW046 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 41326 | 510 | + | 0.472549 |
NA | TW261 | putative aminopeptidase | RecName: Full=Probable cytosol aminopeptidase; EC=3.4.11.1; AltName: Full=Leucine aminopeptidase; Short=LAP; EC=3.4.11.10; AltName: Full=Leucyl aminopeptidase; | chromosome | CDS | 291425 | 1509 | - | 0.484427 |
NA | TW461 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 498160 | 768 | - | 0.442708 |
NA | TW052 | putative secreted protein | SubName: Full=Putative secreted protein; | chromosome | CDS | 43784 | 432 | + | 0.474537 |
NA | TW149 | putative ABC transporter integral membrane subunit | SubName: Full=Putative ABC transporter integral membrane subunit; | chromosome | CDS | 163138 | 936 | + | 0.46047 |
NA | TW146 | putative ABC transporter substrate-binding protein | SubName: Full=Putative ABC transporter substrate-binding protein; | chromosome | CDS | 159968 | 1602 | + | 0.44819 |
NA | TW203 | putative branched chain amino acid ABC transporter ATP-binding subunit | SubName: Full=Putative branched chain amino acid ABC transporter ATP-binding subunit; | chromosome | CDS | 241271 | 783 | + | 0.491699 |
NA | TW227 | putative aminotransferase | SubName: Full=Putative aminotransferase; | chromosome | CDS | 254911 | 864 | + | 0.472222 |
NA | TW289 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 328727 | 330 | + | 0.424242 |
NA | TW201 | putative ABC transporter branched chain amino acid transport permease | SubName: Full=Putative ABC transporter branched chain amino acid transport permease; | chromosome | CDS | 239174 | 1005 | + | 0.467662 |
NA | TW014 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 13628 | 372 | + | 0.481183 |
NA | TW065 | putative ferredoxin/ferredoxin-NADP reductase | SubName: Full=Putative ferredoxin/ferredoxin-NADP reductase; | chromosome | CDS | 55141 | 1344 | + | 0.481399 |
NA | TW043 | putative large integral membrane protein | SubName: Full=Putative large integral membrane protein; | chromosome | CDS | 38634 | 1842 | + | 0.496743 |
NA | TW667 | putative integral membrane sugar transport protein | SubName: Full=Putative integral membrane sugar transport protein; | chromosome | CDS | 758459 | 1233 | - | 0.48013 |
NA | TW703 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 796846 | 1227 | + | 0.483293 |
NA | TW802 | putative chorismate mutase | SubName: Full=Putative chorismate mutase; | chromosome | CDS | 910180 | 318 | + | 0.487421 |
NA | TW051 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 43109 | 312 | + | 0.423077 |
NA | TW200 | putative ABC transporter branched chain amino acid binding protein | SubName: Full=Putative ABC transporter branched chain amino acid binding protein; | chromosome | CDS | 237969 | 1158 | + | 0.5 |
NA | TW202 | putative ABC transporter branched chain amino acid transport permease | SubName: Full=Putative ABC transporter branched chain amino acid transport permease; | chromosome | CDS | 240175 | 1095 | + | 0.463927 |
NA | TW244 | putative transferase | SubName: Full=Putative transferase; | chromosome | CDS | 270823 | 1176 | - | 0.434524 |
NA | TW010 | putative membrane protein | RecName: Full=Cell division protein CrgA; | chromosome | CDS | 11133 | 210 | - | 0.504762 |
NA | TW062 | putative chorismate binding enzyme | SubName: Full=Putative chorismate binding enzyme; | chromosome | CDS | 52002 | 1278 | - | 0.438185 |
NA | TW575 | putative integral membrane transport protein | SubName: Full=Putative integral membrane transport protein; | chromosome | CDS | 628384 | 1140 | + | 0.495614 |
NA | TW150 | putative ABC transporter system integral membrane subunit | SubName: Full=Putative ABC transporter system integral membrane subunit; | chromosome | CDS | 164075 | 966 | + | 0.466874 |
NA | TW238 | Xaa-Pro aminopeptidase | SubName: Full=Xaa-Pro aminopeptidase; | chromosome | CDS | 262339 | 1170 | - | 0.465812 |
NA | TW352 | putative aminotransferase | SubName: Full=Putative aminotransferase; | chromosome | CDS | 384742 | 1152 | + | 0.460069 |
NA | TW529 | putative peptidase | SubName: Full=Putative peptidase; | chromosome | CDS | 567920 | 1341 | - | 0.487696 |
NA | TW060 | putative oxidoreductase | SubName: Full=Putative oxidoreductase; | chromosome | CDS | 48827 | 1137 | + | 0.4635 |
NA | TW145 | putative ABC transporter substrate-binding protein | SubName: Full=Putative ABC transporter substrate-binding protein; | chromosome | CDS | 158391 | 1581 | + | 0.476913 |
NA | TW135 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 142512 | 2397 | + | 0.452232 |
NA | TW178 | putative integral membrane protein | SubName: Full=Putative integral membrane protein; | chromosome | CDS | 220402 | 678 | + | 0.464602 |
NA | TW204 | putative branched chain amino acid ABC transporter ATP-binding subunit | SubName: Full=Putative branched chain amino acid ABC transporter ATP-binding subunit; | chromosome | CDS | 242078 | 684 | + | 0.48538 |
NA | TW083 | putative hydrolase | SubName: Full=Putative hydrolase; | chromosome | CDS | 81523 | 1362 | - | 0.4721 |
NA | TW570 | WiSP family protein | SubName: Full=WiSP family protein; | chromosome | CDS | 617905 | 4671 | - | 0.405267 |
adh | TW445 | alcohol dehydrogenase | SubName: Full=Alcohol dehydrogenase; EC=1.1.1.1; | chromosome | CDS | 485059 | 1071 | - | 0.497666 |
aroA | TW194 | 3-phosphoshikimate 1-carboxyvinyltransferase | RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase; EC=2.5.1.19; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Short=EPSPS; | chromosome | CDS | 231435 | 1332 | - | 0.448949 |
aroB | TW399 | 3-dehydroquinate synthase | RecName: Full=3-dehydroquinate synthase; EC=4.2.3.4; | chromosome | CDS | 435142 | 1143 | + | 0.433071 |
aroC | TW397 | chorismate synthase | RecName: Full=Chorismate synthase; EC=4.2.3.5; AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase; | chromosome | CDS | 433349 | 1203 | + | 0.472984 |
aroE | TW396 | shikimate 5-dehydrogenase | SubName: Full=Shikimate 5-dehydrogenase; EC=1.1.1.25; | chromosome | CDS | 432281 | 948 | + | 0.454641 |
aroH | TW556 | phospho-2-dehydro-3-deoxyheptonate aldolase | SubName: Full=Phospho-2-dehydro-3-deoxyheptonate aldolase; EC=4.1.2.15; | chromosome | CDS | 592766 | 1368 | - | 0.477339 |
aroK | TW398 | shikimate kinase | SubName: Full=Shikimate kinase; EC=2.7.1.71; | chromosome | CDS | 434582 | 501 | + | 0.437126 |
aroQ | TW400 | 3-dehydroquinate dehydratase | RecName: Full=3-dehydroquinate dehydratase; Short=3-dehydroquinase; EC=4.2.1.10; AltName: Full=Type II DHQase; | chromosome | CDS | 436368 | 450 | + | 0.411111 |
asd | TW724 | aspartate-semialdehyde dehydrogenase | RecName: Full=Aspartate-semialdehyde dehydrogenase; EC=1.2.1.11; | chromosome | CDS | 819127 | 1014 | - | 0.454635 |
aspC | TW733 | aspartate aminotransferase | SubName: Full=Aspartate aminotransferase; EC=2.6.1.1; | chromosome | CDS | 827185 | 1215 | + | 0.443621 |
atpI | TW337 | ATP synthase protein I | SubName: Full=ATP synthase protein I; | chromosome | CDS | 369348 | 438 | + | 0.413242 |
carA | TW403 | carbamoyl-phosphate synthase small chain | RecName: Full=Carbamoyl-phosphate synthase small chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase glutamine chain; | chromosome | CDS | 438740 | 1146 | + | 0.462478 |
carB | TW404 | carbamoyl-phosphate synthase large chain | RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5; AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; | chromosome | CDS | 439872 | 3312 | + | 0.450785 |
gabT | TW652 | 4-aminobutyrate aminotransferase | SubName: Full=4-aminobutyrate aminotransferase; EC=2.6.1.19; | chromosome | CDS | 746050 | 1299 | - | 0.488068 |
gcvH | TW658 | probable glycine cleavage system H protein | RecName: Full=Glycine cleavage system H protein; | chromosome | CDS | 750975 | 366 | - | 0.42623 |
gcvP | TW144 | glycine dehydrogenase [decarboxylating] | RecName: Full=Glycine dehydrogenase (decarboxylating); EC=1.4.4.2; AltName: Full=Glycine cleavage system P-protein; AltName: Full=Glycine decarboxylase; AltName: Full=Glycine dehydrogenase (aminomethyl-transferring); | chromosome | CDS | 155275 | 2907 | + | 0.47678 |
gcvT | TW659 | aminomethyltransferase gcvT | RecName: Full=Aminomethyltransferase; EC=2.1.2.10; | chromosome | CDS | 751396 | 1071 | - | 0.467787 |
glnA | TW509 | glutamine synthetase | SubName: Full=Glutamine synthetase; EC=6.3.1.2; | chromosome | CDS | 547499 | 1425 | + | 0.476491 |
glyA | TW655 | serine hydroxymethyltransferase | RecName: Full=Serine hydroxymethyltransferase; Short=SHMT; Short=Serine methylase; EC=2.1.2.1; | chromosome | CDS | 748409 | 1287 | - | 0.48174 |
hom | TW329 | homoserine dehydrogenase | RecName: Full=Homoserine dehydrogenase; EC=1.1.1.3; | chromosome | CDS | 360443 | 1470 | + | 0.461905 |
ilvB | TW567 | acetolactate synthase | RecName: Full=Acetolactate synthase; EC=2.2.1.6; | chromosome | CDS | 604602 | 1746 | - | 0.46449 |
ilvC | TW565 | ketol-acid reductoisomerase | RecName: Full=Ketol-acid reductoisomerase; EC=1.1.1.86; AltName: Full=Acetohydroxy-acid isomeroreductase; AltName: Full=Alpha-keto-beta-hydroxylacyl reductoisomerase; | chromosome | CDS | 603297 | 1002 | - | 0.448104 |
ilvD | TW568 | dihydroxy-acid dehydratase | RecName: Full=Dihydroxy-acid dehydratase; Short=DAD; EC=4.2.1.9; | chromosome | CDS | 606392 | 1710 | - | 0.488304 |
ilvE | TW564 | branched-chain amino acid aminotransferase | RecName: Full=Branched-chain-amino-acid aminotransferase; EC=2.6.1.42; | chromosome | CDS | 602111 | 1086 | - | 0.476059 |
ilvN | TW566 | acetohydroxy acid synthase, small subunit | SubName: Full=Acetohydroxy acid synthase, small subunit; EC=4.1.3.18; | chromosome | CDS | 604367 | 243 | - | 0.419753 |
lysC | TW725 | aspartokinase | RecName: Full=Aspartokinase; EC=2.7.2.4; | chromosome | CDS | 820137 | 1257 | - | 0.466189 |
metT | TW610 | putative methionine synthase | SubName: Full=Putative methionine synthase; EC=2.1.1.14; | chromosome | CDS | 691441 | 2469 | - | 0.46294 |
pepN | TW371 | aminopeptidase N | SubName: Full=Aminopeptidase N; EC=3.4.11.2; | chromosome | CDS | 402731 | 2517 | - | 0.419547 |
proC | TW764 | pyrroline-5-carboxylate reductase | SubName: Full=Pyrroline-5-carboxylate reductase; EC=1.5.1.2; | chromosome | CDS | 861255 | 891 | + | 0.461279 |
prsA | TW585 | ribose-phosphate pyrophosphokinase | SubName: Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; | chromosome | CDS | 657383 | 1047 | + | 0.464183 |
tdcB | TW700 | threonine dehydratase | SubName: Full=Threonine dehydratase; EC=4.2.1.16; | chromosome | CDS | 791981 | 1284 | - | 0.474299 |
thrB | TW331 | homoserine kinase | RecName: Full=Homoserine kinase; Short=HK; Short=HSK; EC=2.7.1.39; | chromosome | CDS | 363012 | 1008 | + | 0.486111 |
thrC | TW330 | threonine synthase | RecName: Full=Threonine synthase; EC=4.2.3.1; | chromosome | CDS | 361919 | 1053 | + | 0.481481 |
trpE | TW384 | anthranilate synthase component I | SubName: Full=Anthranilate synthase component I; EC=4.1.3.27; | chromosome | CDS | 416640 | 1431 | + | 0.438854 |