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2026-03-11 06:13:34

Gene list

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COG category: Cell wall/membrane biogenesis
Organism: Shigella flexneri 2a str. 301, 301

Number of genes found: 223

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Shigella flexneri 2a str. 301, 301
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SF1602 orf, conserved hypothetical proteinchromosome CDS1629859 516 - 0.513566
NA SF1187 orf, conserved hypothetical proteinchromosome CDS1231135 735 - 0.504762
NA SF2075 putative enzyme of sugar metabolismchromosome CDS2093874 825 - 0.511515
NA SF2224 orf, partial conserved hypothetical proteinchromosome CDS2251317 357 - 0.498599
NA SF2223 putative enzymechromosome CDS2250147 1071 - 0.556489
NA SF0594 putative Rhs-family proteinchromosome CDS619508 2808 - 0.604701
NA SF1782 orf, conserved hypothetical proteinchromosome CDS1819496 981 + 0.482161
NA SF1840 orf, conserved hypothetical proteinchromosome CDS1879389 1032 + 0.437016
NA SF0716 putative tail assembly proteinchromosome CDS740196 744 + 0.592742
NA SF2336 orf, conserved hypothetical proteinchromosome CDS2383637 1653 + 0.511192
NA SF0838 putative membrane proteinchromosome CDS870548 1116 + 0.53405
NA SF2139 similar to acriflavin resistance protein AcrA precursorchromosome CDS2161005 1053 + 0.533713
NA SF2500 similar to glutamate racemasechromosome CDS2559472 822 + 0.349148
NA SF2860 orf, conserved hypothetical proteinchromosome CDS2951546 492 - 0.534553
NA SF0268 putative Rhs-family proteinchromosome CDS285544 990 + 0.563636
NA SF1886 putative tail assembly proteinchromosome CDS1926649 600 - 0.586667
NA SF0745 putative membrane proteinchromosome CDS771801 999 - 0.571572
NA SF3022 orf, conserved hypothetical proteinchromosome CDS3120419 897 + 0.546265
NA SF2828 putative amidasechromosome CDS2908082 1344 - 0.526786
NA SF1769 putative resistance proteinchromosome CDS1807783 519 + 0.520231
NA SF1333 orf, conserved hypothetical proteinchromosome CDS1385770 639 - 0.422535
NA SF4039 putative sensor proteinchromosome CDS4174917 1215 + 0.499588
NA SF2508 orf, conserved hypothetical proteinchromosome CDS2569737 1044 - 0.541188
NA SF0267 putative Rhs-family proteinchromosome CDS283259 2289 + 0.595457
NA SF0983 orf, conserved hypothetical proteinchromosome CDS1030456 1947 - 0.505907
NA SF1422 putative outer membrane proteinchromosome CDS1459755 582 + 0.539519
NA SF2092 orf, conserved hypothetical proteinchromosome CDS2108113 552 - 0.333333
NA SF2867 putative lipoproteinchromosome CDS2957804 780 - 0.503846
NA SF1508 orf, conserved hypothetical proteinchromosome CDS1540750 726 + 0.498623
NA SF3803 putative secreted autotransporter toxinchromosome CDS3912667 507 - 0.441815
NA SF3093 putative kinasechromosome CDS3184445 1434 - 0.563459
NA SF1823 putative outer membrane protein 1b (Ib;c)chromosome CDS1861302 897 + 0.461538
NA SF0789 putative D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5chromosome CDS824861 1017 + 0.518191
NA SF1157 orf, conserved hypothetical proteinchromosome CDS1201042 2322 + 0.472007
NA SF0823 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS854976 1050 - 0.537143
NA SF1755 putative outer membrane porin proteinchromosome CDS1792048 1101 + 0.444142
NA SF3514 putative outer membrane pore proteinchromosome CDS3605979 888 - 0.452703
NA SF2333 putative sugar transferasechromosome CDS2379801 969 + 0.496388
NA SF2094 orf, conserved hypothetical proteinchromosome CDS2109581 492 - 0.349593
NA SF2332 putative enzymechromosome CDS2378691 1107 + 0.521229
NA SF0593 putative Rhs-family proteinchromosome CDS618928 636 - 0.430818
NA SF0792 putative D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5chromosome CDS827089 264 + 0.507576
NA SF2124 orf, conserved hypothetical proteinchromosome CDS2138850 2199 - 0.530696
NA SF2565 similar to peptidoglycan synthetase; penicillin-binding protein 1Bchromosome CDS2634467 2115 - 0.565485
NA SF3804 similar to serine proteasechromosome CDS3913711 990 - 0.339394
NA SF2009 putative outer membrane pore proteinchromosome CDS2034263 849 + 0.444052
acrA SF0408 acriflavin resistance protein AcrA precursorchromosome CDS420957 1194 - 0.536851
aefA SF0410 putative alpha helix proteinchromosome CDS423067 3363 + 0.519179
alr SF4152 alanine racemase 1chromosome CDS4322921 1080 - 0.557407
amiA SF2488 N-acetylmuramoyl-l-alanine amidase Ichromosome CDS2548288 870 + 0.501149
amiB SF4324 N-acetylmuramoyl-l-alanine amidase II, murein hydrolasechromosome CDS4500884 1338 + 0.54858
asmA SF2128 suppressor of ompF assembly mutantschromosome CDS2145297 1854 - 0.525351
blc SF4307 outer membrane lipoprotein (lipocalin)chromosome CDS4481576 534 - 0.533708
caiT SF0037 probable carnitine transporterchromosome CDS39847 1515 - 0.522112
cfa SF1689 cyclopropane fatty acyl phospholipid synthasechromosome CDS1721140 1149 + 0.482158
cutF SF0183 copper homeostasis protein (lipoprotein)chromosome CDS206213 711 + 0.513361
dacA SF0649 D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5chromosome CDS686557 1212 + 0.492574
dacB SF3222 D-alanyl-D-alanine carboxypeptidase, fraction B, penicillin-binding protein 4chromosome CDS3321146 1434 + 0.531381
dadX SF1179 alanine racemase 2chromosome CDS1222570 1071 + 0.577031
dapA SF2521 dihydrodipicolinate synthasechromosome CDS2586940 879 - 0.516496
ddg SF2444 putative heat shock proteinchromosome CDS2498631 987 + 0.507599
ddlA SF0232 D-alanine-D-alanine ligase Achromosome CDS255434 1095 + 0.513242
ddlB SF0089 D-alanine-D-alanine ligase Bchromosome CDS100851 921 + 0.514658
dgkA SF4163 diacylglycerol kinasechromosome CDS4332777 369 - 0.517615
dniR SF0197 transcriptional regulator for nitrite reductase (cytochrome c552)chromosome CDS225511 1347 - 0.518189
flgJ SF1085 flagellar basal body protein FlgJchromosome CDS1125093 942 + 0.539278
ftsI SF0081 penicillin-binding protein 3; peptidoglycan synthetasechromosome CDS90031 1767 + 0.5382
ftsQ SF0090 cell division proteinchromosome CDS101773 831 + 0.533093
galE SF0545 UDP-galactose-4-epimerasechromosome CDS566108 1017 + 0.542773
galF SF2105 UTP--glucose-1-P uridyltransferasechromosome CDS2119062 894 - 0.51566
galU SF1236 glucose-1-phosphate uridylyltransferasechromosome CDS1286496 909 + 0.469747
gidB SF3820 glucose-inhibited division protein GidBchromosome CDS3930325 624 - 0.485577
glmS SF3809 L-glutamine:D-fructose-6-phosphateaminotransfera sechromosome CDS3919109 1830 - 0.538251
glmU SF3810 N-acetyl glucosamine-1-phosphate uridyltransferasechromosome CDS3921100 1371 - 0.530999
gmd SF2116 GDP-D-mannose dehydratasechromosome CDS2132813 1122 - 0.542781
gtrBI SF0306 putative bactoprenol glucosyl transferasechromosome CDS318226 930 + 0.422581
hemM SF1212 carrier of lipoproteins to outer membranechromosome CDS1259758 624 - 0.516026
hlpA SF0168 histone-like proteinchromosome CDS191426 486 + 0.495885
htrB SF1061 heat shock proteinchromosome CDS1103420 921 - 0.528773
icsA/virG CP0182 IcsA (VirG), outermembrane protein exposed to the bacterial surface by a C-terminal autotransporter domain and involved in the movement of intracellulpCP301 CDS149644 3309 + 0.409791
icsP/sopA CP0271 IcsP (SopA), outermembrane protease of the OmpP family, involved in cleavage of surface exposed IcsApCP301 CDS220300 948 + 0.376582
imp SF0051 organic solvent tolerance proteinchromosome CDS54073 2355 - 0.5138
ipgF CP0135 IpgF, periplasmic protein, similarities to the catalytic site of lyzozymespCP301 CDS118350 459 + 0.357298
kdsA SF1218 2-dehydro-3-deoxyphosphooctulonate aldolasechromosome CDS1265046 855 + 0.515789
kdsB SF0914 CTP:CMP-3-deoxy-D-manno-octulosonate transferasechromosome CDS954637 747 + 0.524766
kdtA SF3672 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)chromosome CDS3778854 1278 + 0.539124
lepA SF2631 GTP-binding elongation factorchromosome CDS2702540 1800 - 0.536667
lgt SF2838 phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipidchromosome CDS2925524 876 - 0.530822
lnt SF0625 apolipoprotein N-acyltransferase, copper homeostasis proteinchromosome CDS660838 1539 + 0.556855
lolA SF0850 periplasmic proteinchromosome CDS888775 615 + 0.508943
lpp SF1706 murein lipoproteinchromosome CDS1738999 237 + 0.506329
lpxA SF0171 UDP-N-acetylglucosamine acetyltransferasechromosome CDS193504 789 + 0.524715
lpxB SF0172 tetraacyldisaccharide-1-Pchromosome CDS194292 1149 + 0.5396
lpxC SF0093 UDP-3-O-acyl N-acetylglucosamine deacetylasechromosome CDS105175 918 + 0.511983
lpxD SF0169 UDP-3-O-(3-hydroxymyristoyl)-glucosamineN-acyltr ansferasechromosome CDS191915 1026 + 0.530214
lspA SF0023 prolipoprotein signal peptidase (SPase II)chromosome CDS24162 495 + 0.537374
lytB SF0026 LytB proteinchromosome CDS25707 951 + 0.550999
mdoH SF1045 membrane glycosyltransferasechromosome CDS1088168 2544 + 0.546777
mepA SF2404 murein DD-endopeptidasechromosome CDS2453683 825 - 0.551515
mltA SF2827 membrane-bound lytic murein transglycosylase Achromosome CDS2906515 1098 - 0.530965
mltB SF2724 membrane-bound lytic murein transglycosylase Bchromosome CDS2798165 1086 - 0.551565
mltC SF2960 membrane-bound lytic murein transglycosylase Cchromosome CDS3046529 1083 + 0.508772
mltE SF1186 murein transglycosylase Echromosome CDS1230618 516 + 0.531008
mltE SF1183 murein transglycosylase Echromosome CDS1228631 660 + 0.515152
mraY SF0084 phospho-N-acetylmuramoyl-pentapeptidetransferasechromosome CDS94620 1083 + 0.528163
mrcA SF3414 peptidoglycan synthetase, penicillin-binding protein 1Achromosome CDS3492087 2553 + 0.552683
mrcB SF0141 peptidoglycan synthetase; penicillin-binding protein 1Bchromosome CDS156508 2535 + 0.549901
mrdA SF0646 peptidoglycan synthetase; penicillin-binding protein 2chromosome CDS682303 1902 + 0.52734
mreC SF3288 rod shape-determining proteinchromosome CDS3386447 1104 - 0.560688
mreD SF3287 rod shape-determining proteinchromosome CDS3385959 489 - 0.509202
msbB SF1865 suppressor of htrB, heat shock proteinchromosome CDS1903096 972 - 0.513375
msbB2 CP0238 MsbB2, probable lipid A transacetylasepCP301 CDS194662 945 + 0.432804
murA SF3229 UDP-N-glucosamine 1-carboxyvinyltransferasechromosome CDS3327416 1260 - 0.533333
murB SF4050 UDP-N-acetylenolpyruvoylglucosamine reductasechromosome CDS4191810 1029 + 0.464529
murC SF0088 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligasechromosome CDS99383 1476 + 0.544038
murD SF0085 UDP-N-acetylmuramoylalanine-D-glutamate ligasechromosome CDS95705 1317 + 0.552771
murE SF0082 meso-diaminopimelate-adding enzymechromosome CDS91784 1488 + 0.567876
murF SF0083 D-alanine:D-alanine-adding enzymechromosome CDS93268 1359 + 0.548197
murG SF0087 UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferasechromosome CDS98262 1068 + 0.557116
murI SF4049 glutamate racemasechromosome CDS4185509 789 + 0.513308
nanA SF3261 N-acetylneuraminate lyase (aldolase)chromosome CDS3358780 894 - 0.521253
nlpB SF2520 lipoprotein-34chromosome CDS2585889 1035 - 0.553623
nlpC SF1523 lipoproteinchromosome CDS1554276 465 + 0.490323
nlpD SF2765 lipoproteinchromosome CDS2839751 1140 - 0.523684
nmpC SF1977 putative outer membrane porin protein C precurserchromosome CDS2008894 1083 + 0.441367
ompA SF0957 outer membrane protein 3a (II*;G;d)chromosome CDS1006082 1047 - 0.531996
ompC SF2299 outer membrane protein 1b (Ib;c)chromosome CDS2333032 1122 - 0.503565
ompF SF0926 outer membrane protein 1a (Ia;b;F)chromosome CDS971118 1089 - 0.476584
ompX SF0765 outer membrane protein Xchromosome CDS794512 516 + 0.513566
pal SF0556 peptidoglycan-associated lipoproteinchromosome CDS577668 522 - 0.51341
pbpG SF2219 penicillin-binding protein 7chromosome CDS2246775 933 - 0.506967
phoE SF0289 outer membrane pore protein E (E,Ic,NmpAB)chromosome CDS306599 1056 - 0.451705
pic SF2973 serine protease precurserchromosome CDS3067738 3213 - 0.511983
pldA SF3899 outer membrane phospholipase Achromosome CDS4018004 870 + 0.511494
prc SF1395 carboxy-terminal protease for penicillin-binding protein 3chromosome CDS1434711 2043 + 0.502203
rfaC SF3661 heptosyl transferase Ichromosome CDS3768481 963 + 0.502596
rfaD SF3659 ADP-L-glycero-D-mannoheptose-6-epimerasechromosome CDS3766459 933 + 0.50911
rfaF SF3660 ADP-heptose--lps heptosyltransferase IIchromosome CDS3767401 1047 + 0.538682
rfbA SF2102 glucose-1-phosphate thymidylyltransferasechromosome CDS2115768 879 - 0.437998
rfbB SF2104 dTDP-glucose 4,6 dehydratasechromosome CDS2117604 1086 - 0.441989
rfbC SF2101 dTDP-6-deoxy-L-mannose-dehydrogenasechromosome CDS2115218 546 - 0.377289
rfbD SF2103 dTDP-6-deoxy-L-mannose-dehydrogenasechromosome CDS2116705 900 - 0.492222
rfbG SF2098 dTDP-rhamnosyl transferasechromosome CDS2112128 870 - 0.304598
rfbJ SF2095 glycosyl transferasechromosome CDS2110130 390 - 0.369231
rfbU CP0236 UDP-sugar hydrolasepCP301 CDS192554 1089 + 0.43067
rfe SF3858 UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferasechromosome CDS3976481 1104 + 0.492754
rffG SF3862 dTDP-glucose 4,6-dehydratasechromosome CDS3981087 1068 + 0.534644
rffH SF3863 glucose-1-phosphate thymidylyltransferasechromosome CDS3982173 882 + 0.549887
rlpA SF0648 minor lipoproteinchromosome CDS685330 1089 + 0.574839
rlpB SF0640 minor lipoproteinchromosome CDS678334 582 + 0.525773
rspA SF1591 starvation sensing proteinchromosome CDS1621197 1215 - 0.507819
sepA CP0070 SepA, extracellular serine protease of the IgA1 protease family, secreted by a C-terminal autotransporter domainpCP301 CDS52745 4095 - 0.487424
sigA SF2968 serine proteasechromosome CDS3060438 3858 + 0.417574
slp SF3540 outer membrane protein induced after carbon starvationchromosome CDS3630986 600 + 0.446667
slt SF4424 soluble lytic murein transglycosylasechromosome CDS4596312 1965 + 0.54402
slyB SF1668 putative outer membrane proteinchromosome CDS1697978 468 + 0.512821
spr SF2262 putative lipoproteinchromosome CDS2293182 567 + 0.467372
tolA SF0558 membrane spanning proteinchromosome CDS579649 1242 - 0.522544
tolC SF3075 outer membrane channel TolCchromosome CDS3171251 1482 + 0.513495
tonB SF1255 membrane protein, energy transducerchromosome CDS1307402 729 + 0.545953
tsx SF0348 outer membrane protein Tsxchromosome CDS360627 885 - 0.505085
vacJ SF2424 lipoprotein precursorchromosome CDS2474552 756 - 0.52381
waaD SF3663 lipopolysaccharide1,2-N-acetylglucosaminetransfe rasechromosome CDS3770684 1143 - 0.367454
waaG SF3668 LPS alpha1,3-glucosyltransferasechromosome CDS3775446 1125 - 0.483556
waaI SF3662 lipid A-core, surface polymer ligasechromosome CDS3769440 1209 + 0.353184
waaJ SF3664 putative UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferasechromosome CDS3771835 1014 - 0.308679
waaL SF3666 UDP-D-galactose:(glucosyl)lipopolysaccharide-alp ha-1,3-D-galactosyltransferasechromosome CDS3773606 1008 - 0.310516
waaQ SF3669 lipopolysaccharide core biosynthesis proteinchromosome CDS3776567 1059 - 0.466478
wcaC SF2121 putative glycosyl transferasechromosome CDS2136213 1218 - 0.54023
wcaG SF2115 putative nucleotide di-P-sugar epimerase or dehydratasechromosome CDS2131842 969 - 0.558308
wcaI SF2113 putative colanic biosynthesis glycosyl transferasechromosome CDS2130143 1224 - 0.552288
wcaJ SF2110 putative colanic acid biosynthsis UDP-glucose lipid carrier transferasechromosome CDS2125692 1395 - 0.539785
wcaL SF2107 putative colanic acid biosynthesis glycosyl transferasechromosome CDS2121535 1221 - 0.542179
wecB SF3860 UDP-N-acetyl glucosamine-2-epimerasechromosome CDS3978656 1173 + 0.526854
wecC SF3861 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenasechromosome CDS3979825 1263 + 0.537609
wecE SF3865 putative regulatorchromosome CDS3983711 1131 + 0.544651
wecG SF3869 probable UDP-N-acetyl-D-mannosaminuronic acid transferasechromosome CDS3988521 741 + 0.533063
wza SF2126 putative polysaccharide export proteinchromosome CDS2141464 1140 - 0.532456
wzzB SF2089 regulator of length of O-antigen component of lipopolysaccharide chainschromosome CDS2103749 1014 - 0.456607
wzzE SF3859 putative transport proteinchromosome CDS3977596 1047 + 0.524355
yabC SF0079 putative apolipoproteinchromosome CDS88712 942 + 0.552017
yaeF SF0184 orf, conserved hypothetical proteinchromosome CDS207078 825 - 0.487273
yaeL SF0166 orf, conserved hypothetical proteinchromosome CDS187490 1353 + 0.5085
yaeT SF0167 orf, conserved hypothetical proteinchromosome CDS188872 2433 + 0.503083
yajG SF0378 putative polymerase/proteinasechromosome CDS388688 681 - 0.50514
ybdG SF0483 putative transport proteinchromosome CDS501630 1248 - 0.47516
ybiO SF0759 orf, conserved hypothetical proteinchromosome CDS787318 2064 - 0.533915
ybjT SF0824 putative dTDP-glucose enzymechromosome CDS856088 1431 - 0.548567
ycaH SF0911 putative EC 1.2 enzymechromosome CDS952151 987 + 0.549139
yccZ SF0985 BexD protein homologchromosome CDS1033076 1140 - 0.509649
ycfN SF1110 putative beta-glucosidasechromosome CDS1150977 825 + 0.527273
ycfU SF1120 orf, conserved hypothetical proteinchromosome CDS1163168 1200 + 0.545833
ycfW SF1122 putative kinasechromosome CDS1165061 1245 + 0.514859
ycgR SF1184 orf, conserved hypothetical proteinchromosome CDS1229292 735 - 0.504762
yciD SF1259 putative outer membrane proteinchromosome CDS1310342 639 + 0.502347
ycjG SF1331 putative muconate cycloisomerase Ichromosome CDS1383811 966 + 0.543478
ydhO SF1683 putative lipoproteinchromosome CDS1714128 828 + 0.479469
ydjO SF1498 orf, conserved hypothetical proteinchromosome CDS1532881 741 + 0.353576
yeaF SF1441 orf, conserved hypothetical proteinchromosome CDS1476368 747 + 0.52075
yebA SF1866 orf, conserved hypothetical proteinchromosome CDS1904187 1323 - 0.521542
yegX SF2164 orf, conserved hypothetical proteinchromosome CDS2188353 822 - 0.479319
yehZ SF2216 putative transport system permease proteinchromosome CDS2241360 918 - 0.546841
yejO SF2276 putative ATP-binding component of a transport systemchromosome CDS2309590 2511 - 0.486659
yfhD SF2605 putative periplasmic binding transport proteinchromosome CDS2680811 1419 + 0.503876
yfiB SF2665 putative outer membrane proteinchromosome CDS2742276 483 + 0.509317
ygcX SF2800 putative glucarate dehydratasechromosome CDS2877031 1341 - 0.530201
ygcY SF2801 putative glucarate dehydratasechromosome CDS2878392 1341 - 0.539896
ygeA SF2850 putative resistance proteinschromosome CDS2940304 693 - 0.506494
yggB SF2909 putative transport proteinchromosome CDS3003207 861 - 0.498258
yhfN SF3390 putative transport proteinchromosome CDS3470487 1023 + 0.54741
yhiI SF3503 putative membrane proteinchromosome CDS3594179 1068 - 0.59176
yhjG SF3556 orf, conserved hypothetical proteinchromosome CDS3646450 2061 - 0.529355
yiaD SF3586 putative outer membrane proteinchromosome CDS3687645 627 + 0.593301
yjcP SF4140 putative enzymechromosome CDS4309590 1467 - 0.556919
yjeP SF4317 putative periplasmic binding proteinchromosome CDS4490646 3312 - 0.554952
yjfG SF4257 putative ligasechromosome CDS4429908 1374 - 0.55313
ylcB SF0473 putative resistance proteinchromosome CDS489504 1383 + 0.517715
yohK SF2227 putative seritonin transporterchromosome CDS2253842 696 + 0.537356
yqhH SF3059 orf, conserved hypothetical proteinchromosome CDS3154068 258 + 0.476744
yraR SF3193 orf, conserved hypothetical proteinchromosome CDS3290418 681 - 0.547724
ytfB SF4280 orf, conserved hypothetical proteinchromosome CDS4459226 582 + 0.54811
ytfG SF4274 putative oxidoreductasechromosome CDS4453954 861 + 0.538908
ytfM SF4267 orf, conserved hypothetical proteinchromosome CDS4443883 1734 - 0.534025