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2024-04-19 18:42:45

Gene list

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Organism: Escherichia coli, JEF100

Number of genes found: 336

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Escherichia coli, JEF100
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA pCoo misc_feature12492 58 + 0.362069
NA pCoo misc_feature56741 96 + 0.552083
NA pCoo misc_feature30654 453 + 0.465784
NA pCoo stem_loop22713 18 + 0.277778
NA pCoo073 conserved hypothetical proteinpCoo CDS57339 315 + 0.568254
NA pCoo070 putative IS element proteinpCoo CDS55706 426 - 0.49061
NA pCoo repeat_unit82093 19 + 0.631579
NA pCoo misc_feature35306 480 - 0.379167
NA pCoo misc_feature93776 126 - 0.373016
NA pCoo misc_feature30122 66 + 0.560606
NA pCoo misc_feature90857 243 - 0.493827
NA pCoo misc_feature84483 384 - 0.40625
NA pCoo repeat_unit19965 488 + 0.60041
NA pCoo034 hypothetical proteinpCoo CDS26615 366 + 0.530055
NA pCoo misc_feature91725 408 - 0.477941
NA pCoo misc_feature72256 198 - 0.318182
NA pCoo misc_feature71344 144 - 0.263889
NA pCoo repeat_unit65396 26 - 0.615385
NA pCoo054 conserved hypothetical proteinpCoo CDS40097 681 - 0.311307
NA pCoo repeat_unit48392 768 + 0.520833
NA pCoo misc_feature21422 129 + 0.356589
NA pCoo misc_feature87167 885 - 0.479096
NA pCoo misc_feature25793 372 + 0.567204
NA pCoo repeat_unit17277 28 - 0.5
NA pCoo046 glycosyl transferasepCoo CDS34038 1089 - 0.426079
NA pCoo misc_feature88744 1230 - 0.491057
NA pCoo129 hypothetical proteinpCoo CDS97615 264 - 0.5
NA pCoo098 parA-like proteinpCoo CDS77420 633 + 0.467615
NA pCoo083 putative IS element transposase (partial)pCoo pseudo65778 114 + 0.570175
NA pCoo045 virK homologuepCoo CDS33083 951 - 0.410095
NA pCoo repeat_unit15346 5 + 0.4
NA pCoo misc_feature91628 33 - 0.545455
NA pCoo repeat_unit19618 213 + 0.549296
NA pCoo misc_feature76486 66 + 0.590909
NA pCoo010 integrase (pseudogene)pCoo pseudo6519 207 - 0.545894
NA pCoo misc_feature60215 120 - 0.458333
NA conserved hypothetical proteinpCoo CDS80409 270 + 0.622222
NA pCoo repeat_unit53678 6 + 0.5
NA pCoo misc_feature39022 480 + 0.475
NA pCoo063 hypothetical proteinpCoo CDS49291 468 + 0.412393
NA pCoo094 conserved hypothetical protein (fragment)pCoo pseudo73358 897 + 0.488294
NA pCoo024 conserved hypothetical proteinpCoo CDS20779 258 + 0.468992
NA pCoo misc_feature27866 786 + 0.568702
NA pCoo misc_feature25775 70 + 0.485714
NA pCoo007 IS3 family transposasepCoo pseudo5047 819 + 0.494505
NA pCoo misc_feature57867 150 + 0.54
NA pCoo repeat_unit47667 23 + 0.478261
NA pCoo067 conserved hypothetical protein (partial)pCoo pseudo53067 297 + 0.569024
NA pCoo misc_feature5377 486 + 0.504115
NA pCoo misc_feature61904 261 + 0.555556
NA pCoo093 conserved hypothetical proteinpCoo CDS72820 507 - 0.64497
NA pCoo misc_feature39031 27 + 0.481481
NA pCoo misc_feature50147 972 + 0.457819
NA pCoo misc_feature32107 888 - 0.433559
NA pCoo misc_feature95773 33 - 0.515152
NA pCoo misc_feature24536 357 + 0.526611
NA pCoo repeat_unit58279 6 +
NA pCoo079 group II intron-encoded reverse transcriptase/maturase (pseudogene)pCoo pseudo60921 1203 + 0.482959
NA pCoo repeat_region67620 8 + 0.375
NA pCoo005 hypothetical proteinpCoo CDS2884 699 + 0.439199
NA pCoo misc_feature73376 45 + 0.466667
NA pCoo088 putative transposase for insertion sequence element IS186pCoo CDS69139 1197 - 0.503759
NA pCoo misc_feature86258 393 - 0.455471
NA pCoo repeat_unit68380 8 + 0.375
NA pCoo082 group II intron-encoded reverse transcriptase/maturasepCoo CDS63307 1509 + 0.533466
NA pCoo misc_feature88646 106 - 0.377358
NA pCoo090 putative IS element transposase (fragment)pCoo pseudo71772 237 + 0.493671
NA pCoo misc_feature4477 183 - 0.442623
NA pCoo repeat_unit81560 19 + 0.631579
NA pCoo misc_feature58968 24 - 0.625
NA pCoo misc_feature6841 720 - 0.465278
NA pCoo misc_feature68667 58 + 0.275862
NA pCoo repeat_unit65776 223 + 0.547085
NA pCoo069 putative IS element proteinpCoo CDS55359 351 - 0.524217
NA pCoo081 transposase for insertion sequence element IS629 (contains group II intron)pCoo CDS62218 891 + 0.538721
NA pCoo misc_feature47566 24 - 0.625
NA pCoo misc_feature91615 94 - 0.510638
NA pCoo misc_feature57870 69 + 0.507246
NA pCoo misc_feature15849 24 - 0.625
NA pCoo041 IS91 transposase (fragment)pCoo pseudo31462 219 - 0.538813
NA pCoo008 IS629-family transposase (fragment)pCoo pseudo5903 102 - 0.509804
NA pCoo006 IS element transposase (pseudogene)pCoo pseudo4165 999 - 0.47047
NA pCoo misc_feature37667 303 + 0.534653
NA pCoo repeat_unit15351 28 + 0.464286
NA pCoo repeat_unit19805 26 - 0.538462
NA pCoo misc_feature21774 144 - 0.409722
NA pCoo misc_feature32896 69 - 0.42029
NA pCoo repeat_unit61849 147 + 0.482993
NA pCoo misc_feature6525 141 - 0.595745
NA pCoo misc_feature9349 441 + 0.455782
NA pCoo repeat_unit56193 25 - 0.52
NA pCoo039 prophage protein gp48pCoo CDS29984 288 + 0.4375
NA pCoo misc_feature37447 216 + 0.518519
NA pCoo misc_feature69292 714 - 0.495798
NA pCoo misc_feature62636 2270 + 0.540969
NA pCoo misc_feature87572 24 - 0.583333
NA pCoo023 hypothetical proteinpCoo CDS20406 294 - 0.527211
NA pCoo repeat_unit46905 17 + 0.0588235
NA pCoo018 putative IS100 transposase ATP-binding proteinpCoo CDS15417 780 - 0.50641
NA pCoo misc_feature83324 24 - 0.458333
NA pCoo repeat_unit76121 686 + 0.591837
NA pCoo repeat_region53684 2534 - 0.528808
NA pCoo misc_feature60287 204 - 0.5
NA pCoo099 conserved hypothetical proteinpCoo CDS78052 375 + 0.530667
NA pCoo repeat_unit56218 6 + 0.5
NA pCoo misc_feature33125 855 - 0.424561
NA pCoo033 TraK-X deletion and fusion proteinpCoo CDS25775 597 + 0.547739
NA pCoo020 IS element transposase (pseudogene)pCoo pseudo17307 555 + 0.538739
NA pCoo027 putative transglycosyloase (X polypeptide) (pseudogene)pCoo pseudo22316 420 - 0.42381
NA pCoo080 insertion element IS629 proteinpCoo CDS61895 327 + 0.544343
NA pCoo091 immunity protein for colicin IbpCoo CDS71953 384 - 0.356771
NA pCoo repeat_unit19831 6 +
NA pCoo misc_feature67986 378 + 0.497355
NA pCoo misc_feature23874 66 + 0.378788
NA pCoo086 IS1-family insertion element protein (pseudogene)pCoo pseudo67983 384 + 0.494792
NA pCoo stem_loop22691 18 + 0.277778
NA pCoo048 conserved hypothetical proteinpCoo CDS36215 531 - 0.608286
NA pCoo055 putative AraC family regulatory proteinpCoo CDS41025 705 + 0.326241
NA pCoo misc_feature22055 327 - 0.452599
NA pCoo repeat_unit58465 5 + 0.2
NA pCoo misc_feature86276 207 - 0.386473
NA pCoo077 putative IS100 element ATP-binding proteinpCoo CDS58536 780 - 0.505128
NA pCoo repeat_unit19743 94 + 0.5
NA pCoo misc_feature93176 33 - 0.454545
NA pCoo repeat_unit29180 373 + 0.55496
NA pCoo repeat_unit58285 26 + 0.423077
NA pCoo repeat_unit67628 23 - 0.434783
NA pCoo misc_feature63535 768 + 0.542969
NA pCoo misc_feature25438 66 + 0.560606
NA pCoo068 putative IS element transposasepCoo CDS53715 1614 - 0.54399
NA pCoo misc_feature90044 726 - 0.476584
NA pCoo repeat_region61840 1312 + 0.538872
NA pCoo misc_feature72094 108 - 0.333333
NA pCoo078 putative IS100 transposasepCoo CDS59315 1023 - 0.528837
NA pCoo misc_feature93136 91 - 0.43956
NA pCoo misc_feature52453 339 + 0.463127
NA pCoo misc_feature56842 492 + 0.609756
NA pCoo repeat_unit6365 148 + 0.358108
NA pCoo repeat_unit2787 55 + 0.545455
NA pCoo repeat_region17305 2526 + 0.561362
NA pCoo misc_feature24915 285 + 0.484211
NA pCoo repeat_unit53684 25 + 0.56
NA pCoo misc_feature61985 66 + 0.575758
NA pCoo misc_feature54279 609 - 0.558292
NA pCoo021 IS element transposasepCoo CDS17861 348 + 0.563218
NA pCoo repeat_unit72819 361 + 0.631579
NA pCoo misc_feature48492 24 + 0.541667
NA pCoo repeat_unit60424 5 + 0.4
NA pCoo misc_feature6365 2252 + 0.420071
NA pCoo repeat_unit60424 1314 - 0.531202
NA pCoo misc_feature41583 126 + 0.380952
NA pCoo misc_feature34104 510 - 0.47451
NA pCoo misc_feature67684 261 + 0.521073
NA pCoo repeat_unit15351 1954 + 0.516888
NA pCoo misc_feature30095 165 + 0.466667
NA pCoo misc_feature25775 522 + 0.555556
NA pCoo misc_feature15492 540 - 0.512963
NA pCoo misc_feature17876 327 + 0.58104
NA pCoo misc_feature41592 132 + 0.348485
NA pCoo026 IS element transposase (fragment)pCoo pseudo21753 195 - 0.420513
NA pCoo misc_feature78665 960 + 0.458333
NA pCoo misc_feature94274 79 - 0.278481
NA pCoo misc_feature18639 597 + 0.58794
NA pCoo misc_feature47380 66 - 0.530303
NA pCoo repeat_unit60627 33 + 0.424242
NA pCoo repeat_unit68357 23 + 0.391304
NA pCoo misc_feature24635 198 + 0.530303
NA pCoo087 hypothetical secreted proteinpCoo CDS68667 369 + 0.409214
NA pCoo misc_feature94278 123 - 0.341463
NA pCoo misc_feature62590 477 + 0.549266
NA pCoo misc_feature83890 318 - 0.430818
NA pCoo097 resolvasepCoo CDS76033 786 + 0.59542
NA pCoo066 IS element transposasepCoo CDS51895 1017 + 0.462144
NA pCoo misc_feature12501 1080 + 0.387963
NA pCoo misc_feature41478 66 + 0.30303
NA pCoo089 AraC-family trancriptional regulatorpCoo CDS70651 861 - 0.321719
NA pCoo repeat_unit5904 147 - 0.496599
NA pCoo085 IS1-family insertion element proteinpCoo CDS67684 273 + 0.509158
NA pCoo016 transposase insD for insertion element IS2pCoo CDS14271 906 - 0.550773
NA pCoo096 conserved hypothetical proteinpCoo CDS75579 453 + 0.562914
NA pCoo misc_feature17096 120 - 0.458333
NA pCoo repeat_unit36557 139 + 0.676259
NA pCoo repeat_region58285 180 + 0.466667
NA pCoo misc_feature85464 69 - 0.391304
NA pCoo misc_feature17490 255 + 0.501961
NA pCoo misc_feature85661 375 - 0.445333
NA pCoo misc_feature55976 66 - 0.409091
NA pCoo misc_feature55862 240 - 0.458333
NA pCoo misc_feature43767 2259 - 0.392652
NA pCoo repeat_unit60396 28 - 0.5
NA pCoo103 conserved hypothetical protein (fragment)pCoo pseudo80662 267 + 0.543071
NA pCoo misc_feature83030 753 - 0.482072
NA pCoo misc_feature17102 66 - 0.515152
NA pCoo repeat_unit82648 19 - 0.631579
NA pCoo repeat_unit47690 17 + 0.0588235
NA pCoo004 conserved hypothetical proteinpCoo CDS2662 195 + 0.497436
NA pCoo misc_feature58611 540 - 0.511111
NA pCoo017 transposase insC for insertion element IS2 (pseudogene)pCoo pseudo60424 279 - 0.53405
NA pCoo misc_feature32874 145 - 0.344828
NA pCoo repeat_unit31674 94 + 0.457447
NA pCoo misc_feature2674 102 + 0.529412
NA pCoo misc_feature4033 333 - 0.489489
NA pCoo repeat_unit58470 28 + 0.464286
NA pCoo misc_feature55368 327 - 0.535168
NA pCoo038 prophage protein gp49pCoo CDS29673 312 + 0.455128
NA pCoo misc_feature60221 66 - 0.515152
NA pCoo misc_feature16340 534 - 0.543071
NA pCoo misc_feature40136 627 - 0.311005
NA pCoo misc_feature84364 336 - 0.404762
NA pCoo misc_feature22910 381 + 0.393701
NA pCoo repeat_unit61840 26 + 0.576923
NA pCoo misc_feature7786 246 - 0.369919
NA pCoo repeat_unit48392 23 - 0.434783
NA pCoo misc_feature48447 264 + 0.515152
NA pCoo misc_feature71194 135 - 0.37037
NA pCoo repeat_unit1961 371 + 0.568733
NA pCoo misc_feature61056 678 + 0.485251
NA pCoo repeat_unit58470 1954 + 0.516377
NA pCoo misc_feature9877 70 + 0.428571
NA pCoo misc_feature45980 187 - 0.363636
NA pCoo misc_feature42993 354 - 0.429379
NA pCoo misc_feature59459 534 - 0.543071
NA pCoo076 IS element transposase (pseudogene)pCoo pseudo58359 111 + 0.468468
NA pCoo060 IS element transposase (pseudogene)pCoo pseudo48179 207 + 0.400966
NA pCoo repeat_unit73222 139 + 0.669065
NA pCoo misc_feature48636 66 + 0.530303
NA pCoo repeat_region3767 1280 + 0.461719
NA pCoo repeat_region67628 752 + 0.49734
NA pCoo misc_feature25222 561 + 0.479501
NA pCoo misc_feature14319 498 - 0.554217
NA pCoo misc_feature25255 69 + 0.434783
NA pCoo repeat_unit36214 361 + 0.592798
NA pCoo misc_feature24996 69 + 0.434783
NA pCoo003 conserved hypothetical proteinpCoo CDS2396 270 + 0.518519
NA pCoo043 IS630 transposase (fragment)pCoo pseudo31770 243 + 0.485597
NA pCoo misc_feature72602 138 + 0.521739
NA pCoo misc_feature38006 615 + 0.57561
NA pCoo misc_feature42075 825 - 0.44
NA pCoo repeat_unit82066 19 - 0.631579
NA pCoo repeat_unit82977 19 - 0.578947
NA pCoo misc_feature25222 100 + 0.42
NA pCoo042 IS679 transposase (fragment)pCoo pseudo31674 54 + 0.518519
NA pCoo repeat_unit56217 488 + 0.60041
NA pCoo053 putative resolvasepCoo CDS39016 642 + 0.478193
NA pCoo misc_feature97800 79 - 0.493671
NA pCoo misc_feature95418 129 - 0.395349
NA pCoo025 putative integral membrane proteinpCoo CDS21332 261 + 0.356322
NA pCoo092 conserved hypothetical proteinpCoo CDS72494 309 + 0.533981
NA pCoo misc_feature74425 396 - 0.608586
NA pCoo019 IS100 transposasepCoo CDS16196 1023 - 0.528837
NA pCoo repeat_unit46922 768 - 0.527344
NA pCoo repeat_unit37995 686 + 0.572886
NA pCoo misc_feature83693 69 - 0.565217
NA pCoo misc_feature47755 306 - 0.493464
NA pCoo repeat_unit17305 5 + 0.2
NA pCoo repeat_unit46922 23 - 0.434783
NA pCoo repeat_unit49137 23 + 0.391304
NA pCoo repeat_unit14268 33 - 0.363636
NA pCoo misc_feature41439 138 + 0.275362
NA pCoo misc_feature39565 66 + 0.545455
NA pCoo misc_feature38360 66 + 0.575758
NA pCoo repeat_unit81533 19 - 0.631579
NA pCoo022 IS element transposasepCoo CDS18228 1572 + 0.571883
NA pCoo103 conserved hypothetical protein (pseudogene)pCoo pseudo80925 315 + 0.653968
NA pCoo095 PIN-domain containing proteinpCoo CDS74416 417 - 0.597122
NA pCoo misc_feature9280 67 + 0.41791
NA pCoo misc_feature48749 390 + 0.530769
NA pCoo misc_feature97524 66 - 0.530303
NA pCoo misc_feature76132 615 + 0.593496
NA pCoo049 conserved hypothetical proteinpCoo CDS36745 258 - 0.5
NA pCoo misc_feature84905 79 - 0.455696
NA pCoo repeat_unit8469 148 - 0.358108
NA pCoo084 transcriptional regulator (pseudogene)pCoo pseudo66793 432 + 0.277778
RNA-I pCoo misc_RNA27674 93 - 0.451613
aphA pCoo011 aminoglycoside 3'-phosphotransferase (Kanamycin resistance-artifical insertion)pCoo CDS6817 786 - 0.450382
ccdA pCoo050 CcdA antitoxin proteinpCoo CDS37447 219 + 0.515982
ccdB pCoo051 cytotoxic protein CcdBpCoo CDS37667 306 + 0.529412
cooA pCoo013 CS1 fimbrial subunit A precursorpCoo CDS9280 516 + 0.45155
cooB pCoo009 CS1 fimbrial subunit B precursorpCoo CDS6261 717 + 0.368201
cooC pCoo014 CooC precursor (Usher protein)pCoo CDS9877 2619 + 0.383734
cooD pCoo015 CooD precursorpCoo CDS12492 1092 + 0.386447
def pCoo040 peptide deformylasepCoo CDS30648 510 + 0.462745
eatA pCoo056 secreted autotransporter serine protease EatApCoo CDS42072 4095 - 0.406838
hok pCoo075 post-segregation killing proteinpCoo CDS57861 162 + 0.518519
insA pCoo059 insertion element IS1 protein InsApCoo CDS47359 276 - 0.532609
insA pCoo061 insertion element IS1 protein InsApCoo CDS48447 276 + 0.518116
insB pCoo058 insertion element IS1 protein InsBpCoo CDS46937 504 - 0.535714
insB pCoo062 insertion element IS1 protein InsB (pseudogene)pCoo pseudo48641 501 + 0.536926
mok pCoo074 modulator of hok proteinpCoo CDS57803 216 + 0.50463
msbB pCoo044 lipid A biosynthesis (kdo)2-(lauroyl)-lipid iva acyltransferasepCoo CDS32074 945 - 0.42963
parA pCoo064 partition protein ParApCoo CDS50147 981 + 0.457696
parB pCoo065 partition protein ParBpCoo CDS51130 423 + 0.439716
pilI pCoo123 PilI proteinpCoo CDS94395 255 - 0.580392
pilJ pCoo122 PilJ proteinpCoo CDS93900 453 - 0.350993
pilK pCoo121 PilK proteinpCoo CDS93260 591 - 0.370558
pilL pCoo120 lipoprotein (PilL protein)pCoo CDS92159 1068 - 0.500936
pilM pCoo119 PilM proteinpCoo CDS91722 438 - 0.486301
pilN pCoo118 lipoprotein (PilN protein)pCoo CDS90026 1683 - 0.492573
pilO pCoo117 PilO proteinpCoo CDS88738 1296 - 0.487654
pilP pCoo116 PilP proteinpCoo CDS88299 453 - 0.439294
pilQ pCoo115 nucleotide-binding proteinpCoo CDS86735 1554 - 0.469755
pilR pCoo114 integral membrane proteinpCoo CDS85625 1098 - 0.443534
pilS pCoo113 type IV prepilinpCoo CDS84993 615 - 0.437398
pilT pCoo112 putative transglycosylase PilTpCoo CDS84423 561 - 0.434938
pilU pCoo111 prepilin peptidasepCoo CDS83782 657 - 0.420091
pilV pCoo110 typeIV prepilin (truncated)pCoo CDS83024 759 - 0.480896
pilV' pCoo108 pilV alternative C-terminus (fragment)pCoo pseudo82312 354 - 0.446328
pilV' pCoo107 pilV alternative C-terminus (fragment)pCoo pseudo82094 222 + 0.495495
pilV' pCoo105 pilV alternative C-terminus (fragment)pCoo pseudo81561 258 + 0.410853
pilV' pCoo109 pilV alternative C-terminus (fragment)pCoo pseudo82695 300 - 0.42
pilV' pCoo106 pilV alternative C-terminus (fragment)pCoo pseudo81820 264 - 0.488636
pilV' pCoo104 pilV alternative C-terminus (fragment)pCoo pseudo81287 264 - 0.450758
psiA pCoo072 plasmid SOS inhibition protein (partial)pCoo pseudo56842 501 + 0.612774
repA pCoo002 replication initiation proteinpCoo CDS456 1032 + 0.555233
repA1 pCoo036 replication initiation protein RepApCoo CDS27845 858 + 0.562937
repA2 pCoo035 replication regulatory protein RepA2pCoo CDS27285 258 + 0.484496
repA4 pCoo037 hypothetical protein RepA4 (pseudogene)pCoo pseudo29065 387 + 0.568475
repA6 pCoo035a positive regulator of repfic repa1 expression (repa1 leader peptide)pCoo CDS27778 75 + 0.466667
repY pCoo001 RepY proteinpCoo CDS379 90 + 0.488889
resD pCoo052 putative resolvasepCoo CDS38000 687 + 0.569141
sat4 pCoo012 streptothricin acetyltransferase (pseudogene)pCoo pseudo7945 471 - 0.380042
shf pCoo047 putative polysaccharide deacetylasepCoo CDS35129 822 - 0.391728
sok pCoo misc_RNA57751 65 - 0.461538
ssb pCoo071 single-strand binding protein (partial)pCoo pseudo56687 156 + 0.519231
stbA pCoo100 plasmid stability protein StbApCoo CDS78665 975 + 0.458462
stbB pCoo101 plasmid stability protein StbBpCoo CDS79643 393 + 0.501272
tnpA pCoo057 transposase for transposon gamma-delta (pseudogene)pCoo pseudo47911 384 - 0.455729
traA pCoo128 TraA proteinpCoo CDS97410 237 - 0.434599
traA pCoo030 fimbrial protein precursorpCoo CDS24536 360 + 0.525
traB pCoo127 TraB proteinpCoo CDS96435 534 - 0.432584
traC pCoo126 TraC proteinpCoo CDS95497 684 - 0.504386
traD pCoo125 TraD proteinpCoo CDS94917 567 - 0.430335
traE pCoo032 TraE proteinpCoo CDS25222 564 + 0.47695
traJ pCoo029 TraJ proteinpCoo CDS23775 282 + 0.37234
traL pCoo031 TraL proteinpCoo CDS24897 306 + 0.473856
traM pCoo028 TraM proteinpCoo CDS22910 387 + 0.395349