Gene list
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Organism: Citrobacter freundii
Number of genes found: 228
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Citrobacter freundii | ||||||||
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Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | pCTX-M3 | repeat_region | 1557 | 22 | + | 0.181818 | ||
NA | pCTX-M3 | misc_feature | 65960 | 38 | + | 0.526316 | ||
NA | pCTX-M3 | repeat_region | 63800 | 14 | + | 0.5 | ||
NA | pCTX-M3 | misc_feature | 64640 | 1358 | + | 0.603093 | ||
NA | pCTX-M3 | misc_feature | 31516 | 19 | + | 0.473684 | ||
NA | pCTX-M3 | terminator | 55962 | 18 | + | 0.666667 | ||
NA | pCTX-M3 | repeat_region | 3085 | 28 | + | 0.321429 | ||
NA | pCTX-M3 | -10_signal | 65763 | 6 | + | 0.333333 | ||
NA | pCTX-M3 | terminator | 54286 | 24 | + | 0.5 | ||
NA | pCTX-M3 | repeat_region | 80404 | 14 | + | 0.571429 | ||
NA | pCTX-M3 | -35_signal | 65740 | 6 | + | 0.5 | ||
NA | pCTX-M3 | repeat_region | 64609 | 14 | + | 0.714286 | ||
NA | pCTX-M3 | misc_feature | 67754 | 1311 | + | 0.567506 | ||
NA | pCTX-M3 | repeat_region | 79595 | 14 | + | 0.5 | ||
IS26 | pCTX-M3 | repeat_region | 79595 | 823 | + | 0.521264 | ||
IS26 | pCTX-M3 | repeat_region | 63800 | 823 | + | 0.526124 | ||
ISEcp1 | pCTX-M3 | repeat_region | 1557 | 1556 | + | 0.329692 | ||
aac3 | pCTX-M3 | RBS | 63639 | 5 | - | 0.6 | ||
aac3 | aminoglycoside acetyltransferase | pCTX-M3 | CDS | 62770 | 861 | - | 0.598142 | |
aadA2 | streptomycin/spectinomycin 3' adenyltransferase | pCTX-M3 | CDS | 66905 | 792 | + | 0.518939 | |
blaCTX-M3 | pCTX-M3 | -10_signal | 3183 | 6 | + | |||
blaCTX-M3 | pCTX-M3 | terminator | 4126 | 26 | + | 0.423077 | ||
blaCTX-M3 | pCTX-M3 | RBS | 3231 | 3 | + | 0.666667 | ||
blaCTX-M3 | pCTX-M3 | -35_signal | 3161 | 7 | + | 0.571429 | ||
blaCTX-M3 | ES-beta-lactamase | pCTX-M3 | CDS | 3240 | 876 | + | 0.547945 | |
blaTEM1 | BlaTEM1 | pCTX-M3 | CDS | 56938 | 861 | - | 0.490128 | |
blaTEM1 | pCTX-M3 | RBS | 57804 | 5 | - | 0.4 | ||
dhfr | dihydrofolate reductase | pCTX-M3 | CDS | 66000 | 498 | + | 0.512048 | |
excA | ExcA | pCTX-M3 | CDS | 53623 | 654 | + | 0.440367 | |
excA | pCTX-M3 | RBS | 53611 | 5 | + | 0.6 | ||
intI | pCTX-M3 | -10_signal | 65882 | 6 | - | 0.333333 | ||
intI | pCTX-M3 | -35_signal | 65905 | 6 | - | 0.5 | ||
intI | class I integron integrase | pCTX-M3 | CDS | 64842 | 1014 | - | 0.612426 | |
klcA | KlcA | pCTX-M3 | CDS | 27894 | 441 | + | 0.553288 | |
klcA | pCTX-M3 | RBS | 27881 | 5 | + | 0.6 | ||
korC | pCTX-M3 | RBS | 22099 | 5 | + | 0.8 | ||
korC | KorC | pCTX-M3 | CDS | 22110 | 267 | + | 0.573034 | |
mel | probable macrolide efflux protein | pCTX-M3 | CDS | 75457 | 1476 | + | 0.399729 | |
mel | pCTX-M3 | RBS | 75442 | 5 | + | 0.6 | ||
mph1 | putative protein | pCTX-M3 | CDS | 76988 | 237 | + | 0.383966 | |
mph1 | pCTX-M3 | RBS | 76975 | 5 | + | 0.4 | ||
mph2 | putative protein | pCTX-M3 | CDS | 77243 | 630 | + | 0.361905 | |
mucA | pCTX-M3 | -10_signal | 4720 | 6 | + | |||
mucA | pCTX-M3 | -35_signal | 4698 | 6 | + | 0.5 | ||
mucA | MucA | pCTX-M3 | CDS | 4748 | 435 | + | 0.577011 | |
mucA | pCTX-M3 | RBS | 4736 | 5 | + | 0.8 | ||
mucA | pCTX-M3 | protein_bind | 4714 | 18 | + | 0.222222 | ||
mucB | MucB | pCTX-M3 | CDS | 5131 | 1305 | + | 0.597701 | |
mucB | pCTX-M3 | RBS | 5111 | 5 | + | 0.6 | ||
nbrB | NbrB | pCTX-M3 | CDS | 72385 | 774 | + | 0.303618 | |
nbrB | pCTX-M3 | RBS | 72373 | 3 | + | 0.666667 | ||
nikA | NikA | pCTX-M3 | CDS | 31723 | 318 | + | 0.443396 | |
nikA | pCTX-M3 | RBS | 31708 | 5 | + | 0.6 | ||
nikB | putative nickase | pCTX-M3 | CDS | 32030 | 1977 | + | 0.479514 | |
nikB | pCTX-M3 | RBS | 32018 | 5 | + | 0.6 | ||
nuc | pCTX-M3 | RBS | 18633 | 4 | + | 0.75 | ||
nuc | Nuc | pCTX-M3 | CDS | 18643 | 552 | + | 0.565217 | |
orf1 | putative protein | pCTX-M3 | CDS | 4162 | 549 | - | 0.553734 | |
orf10 | putative protein | pCTX-M3 | CDS | 11730 | 357 | + | 0.59944 | |
orf10 | pCTX-M3 | RBS | 11718 | 4 | + | 0.75 | ||
orf11 | pCTX-M3 | RBS | 12053 | 4 | + | 0.75 | ||
orf11 | putative protein | pCTX-M3 | CDS | 12064 | 585 | + | 0.594872 | |
orf12 | pCTX-M3 | RBS | 12634 | 4 | + | 0.75 | ||
orf12 | putative protein | pCTX-M3 | CDS | 12645 | 720 | + | 0.606944 | |
orf13 | putative protein | pCTX-M3 | CDS | 13526 | 546 | - | 0.538462 | |
orf13 | pCTX-M3 | RBS | 14077 | 5 | - | 0.6 | ||
orf14 | pCTX-M3 | RBS | 14197 | 5 | + | 0.6 | ||
orf14 | putative protein | pCTX-M3 | CDS | 14212 | 462 | + | 0.621212 | |
orf15 | pCTX-M3 | RBS | 14657 | 4 | + | 0.75 | ||
orf15 | putative protein | pCTX-M3 | CDS | 14670 | 249 | + | 0.570281 | |
orf16 | pCTX-M3 | RBS | 14900 | 4 | + | 0.75 | ||
orf16 | putative protein | pCTX-M3 | CDS | 14911 | 588 | + | 0.557823 | |
orf17 | putative protein | pCTX-M3 | CDS | 15495 | 486 | + | 0.572016 | |
orf17 | pCTX-M3 | RBS | 15485 | 5 | + | 0.6 | ||
orf18 | pCTX-M3 | RBS | 15969 | 4 | + | 0.5 | ||
orf18 | putative protein | pCTX-M3 | CDS | 15977 | 249 | + | 0.518072 | |
orf19 | putative protein | pCTX-M3 | CDS | 19312 | 507 | + | 0.544379 | |
orf19 | pCTX-M3 | RBS | 19300 | 5 | + | 0.6 | ||
orf2 | putative protein | pCTX-M3 | CDS | 6458 | 852 | - | 0.629108 | |
orf2 | pCTX-M3 | RBS | 7321 | 5 | - | 0.8 | ||
orf20 | pCTX-M3 | RBS | 19800 | 4 | + | 0.75 | ||
orf20 | putative protein | pCTX-M3 | CDS | 19811 | 480 | + | 0.545833 | |
orf21 | putative protein | pCTX-M3 | CDS | 20319 | 411 | + | 0.547445 | |
orf21 | pCTX-M3 | RBS | 20308 | 5 | + | 0.6 | ||
orf22 | putative protein | pCTX-M3 | CDS | 20847 | 264 | + | 0.454545 | |
orf22 | pCTX-M3 | RBS | 20835 | 5 | + | 0.6 | ||
orf23 | pCTX-M3 | RBS | 21118 | 4 | + | 0.75 | ||
orf23 | putative protein | pCTX-M3 | CDS | 21132 | 363 | + | 0.465565 | |
orf23 | pCTX-M3 | terminator | 21504 | 22 | + | 0.454545 | ||
orf24 | putative protein | pCTX-M3 | CDS | 21616 | 450 | + | 0.526667 | |
orf24 | pCTX-M3 | RBS | 21605 | 4 | + | 0.75 | ||
orf25 | putative protein | pCTX-M3 | CDS | 22440 | 1284 | + | 0.517134 | |
orf25 | pCTX-M3 | RBS | 22429 | 5 | + | 0.4 | ||
orf26 | pCTX-M3 | RBS | 24570 | 5 | + | 0.6 | ||
orf26 | putative protein | pCTX-M3 | CDS | 24581 | 861 | + | 0.526132 | |
orf27 | putative protein | pCTX-M3 | CDS | 25631 | 339 | + | 0.507375 | |
orf27 | pCTX-M3 | RBS | 25618 | 5 | + | 0.6 | ||
orf28 | putative protein | pCTX-M3 | CDS | 26595 | 237 | + | 0.552743 | |
orf28 | pCTX-M3 | RBS | 26581 | 6 | + | 0.666667 | ||
orf29 | pCTX-M3 | RBS | 26904 | 5 | + | 0.6 | ||
orf29 | putative protein | pCTX-M3 | CDS | 26916 | 411 | + | 0.542579 | |
orf3 | pCTX-M3 | RBS | 7647 | 4 | - | 0.5 | ||
orf3 | putative protein | pCTX-M3 | CDS | 7312 | 321 | - | 0.545171 | |
orf30 | putative protein | pCTX-M3 | CDS | 27388 | 306 | + | 0.526144 | |
orf30 | pCTX-M3 | RBS | 27375 | 6 | + | 0.666667 | ||
orf31 | putative protein | pCTX-M3 | CDS | 28378 | 285 | + | 0.505263 | |
orf31 | pCTX-M3 | RBS | 28368 | 4 | + | 0.75 | ||
orf32 | putative protein | pCTX-M3 | CDS | 28816 | 222 | + | 0.373874 | |
orf32 | pCTX-M3 | RBS | 28806 | 5 | + | 0.6 | ||
orf33 | pCTX-M3 | RBS | 29590 | 4 | + | 0.75 | ||
orf33 | putative protein | pCTX-M3 | CDS | 29601 | 312 | + | 0.474359 | |
orf34 | pCTX-M3 | RBS | 30033 | 4 | + | 0.75 | ||
orf34 | putative protein | pCTX-M3 | CDS | 30045 | 537 | + | 0.422719 | |
orf35 | pCTX-M3 | RBS | 31453 | 4 | - | 0.75 | ||
orf35 | putative protein | pCTX-M3 | CDS | 31082 | 366 | - | 0.42623 | |
orf36 | putative protein | pCTX-M3 | CDS | 40386 | 666 | + | 0.453453 | |
orf36 | pCTX-M3 | RBS | 40375 | 5 | + | 0.8 | ||
orf37 | putative protein | pCTX-M3 | CDS | 45675 | 447 | - | 0.50783 | |
orf37 | pCTX-M3 | RBS | 46131 | 4 | - | 0.75 | ||
orf38 | putative protein | pCTX-M3 | CDS | 46054 | 495 | + | 0.428283 | |
orf38 | pCTX-M3 | RBS | 46043 | 4 | + | 0.75 | ||
orf39 | pCTX-M3 | RBS | 61270 | 6 | - | 0.666667 | ||
orf39 | putative protein | pCTX-M3 | CDS | 60104 | 1158 | - | 0.607081 | |
orf4 | pCTX-M3 | RBS | 8481 | 4 | - | 0.75 | ||
orf4 | putative protein | pCTX-M3 | CDS | 7777 | 693 | - | 0.542569 | |
orf40 | putative protein | pCTX-M3 | CDS | 61291 | 228 | - | 0.530702 | |
orf40 | pCTX-M3 | RBS | 61528 | 5 | - | 0.8 | ||
orf41 | putative protein | pCTX-M3 | CDS | 62215 | 543 | - | 0.570902 | |
orf41 | pCTX-M3 | RBS | 62767 | 4 | - | 0.75 | ||
orf42 | putative protein | pCTX-M3 | CDS | 69445 | 1542 | + | 0.554475 | |
orf42 | pCTX-M3 | RBS | 69434 | 5 | + | 0.8 | ||
orf43 | pCTX-M3 | RBS | 73836 | 4 | - | 0.5 | ||
orf43 | putative protein | pCTX-M3 | CDS | 73640 | 186 | - | 0.354839 | |
orf44 | putative protein | pCTX-M3 | CDS | 78231 | 543 | - | 0.377532 | |
orf46 | pCTX-M3 | RBS | 84108 | 7 | - | 0.714286 | ||
orf46 | putative transcriptional regulator | pCTX-M3 | CDS | 83591 | 510 | - | 0.523529 | |
orf47 | putative protein | pCTX-M3 | CDS | 89016 | 351 | - | 0.495726 | |
orf47 | pCTX-M3 | RBS | 89375 | 4 | - | 0.75 | ||
orf5 | pCTX-M3 | RBS | 8702 | 4 | - | 0.5 | ||
orf5 | putative protein | pCTX-M3 | CDS | 8484 | 210 | - | 0.504762 | |
orf6 | putative protein | pCTX-M3 | CDS | 8696 | 219 | - | 0.52968 | |
orf6 | pCTX-M3 | RBS | 8923 | 4 | - | 0.75 | ||
orf7 | pCTX-M3 | RBS | 9649 | 5 | - | 0.8 | ||
orf7 | putative protein | pCTX-M3 | CDS | 8959 | 684 | - | 0.649123 | |
orf8 | pCTX-M3 | RBS | 9921 | 5 | - | 0.8 | ||
orf8 | putative protein | pCTX-M3 | CDS | 9639 | 273 | - | 0.666667 | |
orf9 | pCTX-M3 | RBS | 11210 | 4 | - | 0.5 | ||
orf9 | putative protein | pCTX-M3 | CDS | 9929 | 1275 | - | 0.596078 | |
orfF | putative protein | pCTX-M3 | CDS | 66609 | 291 | + | 0.525773 | |
parA | ParA | pCTX-M3 | CDS | 17213 | 975 | + | 0.555897 | |
parA | pCTX-M3 | RBS | 17203 | 4 | + | 0.75 | ||
parB | ParB | pCTX-M3 | CDS | 18190 | 444 | + | 0.59009 | |
parB | pCTX-M3 | RBS | 18180 | 4 | + | 0.75 | ||
pemI | PemI | pCTX-M3 | CDS | 757 | 258 | + | 0.554264 | |
pemI | pCTX-M3 | RBS | 741 | 5 | + | |||
pemK | pCTX-M3 | RBS | 1002 | 5 | + | 0.8 | ||
pemK | PemK | pCTX-M3 | CDS | 1016 | 333 | + | 0.603604 | |
pri | pCTX-M3 | RBS | 36732 | 4 | + | 0.75 | ||
pri | DNA primase | pCTX-M3 | CDS | 36745 | 3213 | + | 0.499533 | |
qacEdelta1 | remnants of quarternary ammonium compounds resistance protein | pCTX-M3 | CDS | 67860 | 348 | + | 0.5 | |
qacEdelta1 | pCTX-M3 | RBS | 67849 | 4 | + | 0.75 | ||
repA | RepA | pCTX-M3 | CDS | 54879 | 1056 | + | 0.586174 | |
repA | pCTX-M3 | RBS | 54871 | 4 | + | 0.75 | ||
repB | RepB | pCTX-M3 | CDS | 54832 | 51 | + | 0.54902 | |
repB | pCTX-M3 | RBS | 54818 | 5 | + | 0.4 | ||
repC | RepC | pCTX-M3 | CDS | 54351 | 231 | + | 0.415584 | |
repC | pCTX-M3 | RBS | 54341 | 4 | + | 0.75 | ||
resD | pCTX-M3 | RBS | 16229 | 4 | + | 1 | ||
resD | resolvase | pCTX-M3 | CDS | 16244 | 729 | + | 0.56653 | |
rmoA | RmoA | pCTX-M3 | CDS | 26067 | 231 | + | 0.575758 | |
rmoA | pCTX-M3 | RBS | 26054 | 4 | + | 0.5 | ||
ssb | Ssb | pCTX-M3 | CDS | 29109 | 435 | + | 0.485057 | |
ssb | pCTX-M3 | RBS | 29099 | 4 | + | 0.75 | ||
sul1 | pCTX-M3 | RBS | 68188 | 5 | + | 0.8 | ||
sul1 | dihydropteroate synthase | pCTX-M3 | CDS | 68201 | 840 | + | 0.616667 | |
tir | transfer inhibition protein | pCTX-M3 | CDS | 11 | 654 | + | 0.559633 | |
tir | pCTX-M3 | RBS | 1 | 4 | + | 0.75 | ||
tnp | putative transposase | pCTX-M3 | CDS | 73874 | 1185 | + | 0.469198 | |
tnpA | pCTX-M3 | RBS | 1630 | 4 | + | 0.75 | ||
tnpA | transposase | pCTX-M3 | CDS | 1643 | 1263 | + | 0.340459 | |
tnpA | pCTX-M3 | -10_signal | 1597 | 6 | + | 0.333333 | ||
tnpA | pCTX-M3 | -35_signal | 1574 | 6 | + | 0.166667 | ||
tnpATn1 | TnpA | pCTX-M3 | CDS | 80487 | 2550 | + | 0.516863 | |
tnpAcp1 | pCTX-M3 | RBS | 71310 | 3 | + | 0.666667 | ||
tnpAcp1 | putative transposase | pCTX-M3 | CDS | 71322 | 738 | + | 0.577236 | |
tnpAcp2 | putative transposase | pCTX-M3 | CDS | 58619 | 1371 | - | 0.588621 | |
tnpAcp2 | pCTX-M3 | RBS | 59998 | 4 | - | 1 | ||
tnpIS26cp1 | transposase | pCTX-M3 | CDS | 63863 | 705 | + | 0.531915 | |
tnpIS26cp1 | pCTX-M3 | RBS | 63853 | 4 | + | 0.75 | ||
tnpIS26cp2 | transposase | pCTX-M3 | CDS | 79658 | 705 | + | 0.529078 | |
tnpIS26cp2 | pCTX-M3 | RBS | 79648 | 4 | + | 0.75 | ||
traH | pCTX-M3 | RBS | 34010 | 4 | + | 0.75 | ||
traH | TraH | pCTX-M3 | CDS | 34020 | 501 | + | 0.487026 | |
traI | pCTX-M3 | RBS | 34504 | 4 | + | 0.75 | ||
traI | TraI | pCTX-M3 | CDS | 34517 | 780 | + | 0.521795 | |
traJ | TraJ | pCTX-M3 | CDS | 35307 | 1164 | + | 0.519759 | |
traJ | pCTX-M3 | RBS | 35296 | 4 | + | 0.75 | ||
traK | TraK | pCTX-M3 | CDS | 36460 | 261 | + | 0.51341 | |
traK | pCTX-M3 | RBS | 36450 | 4 | + | 0.75 | ||
traL | pCTX-M3 | RBS | 39907 | 5 | + | 0.6 | ||
traL | TraL | pCTX-M3 | CDS | 39923 | 513 | + | 0.477583 | |
traM | TraM | pCTX-M3 | CDS | 41029 | 783 | + | 0.44189 | |
traN | TraN | pCTX-M3 | CDS | 41820 | 1152 | + | 0.533854 | |
traN | pCTX-M3 | RBS | 41810 | 4 | + | 0.75 | ||
traO | pCTX-M3 | RBS | 42971 | 4 | + | 0.75 | ||
traO | TraO | pCTX-M3 | CDS | 42983 | 1350 | + | 0.531852 | |
traP | pCTX-M3 | RBS | 44332 | 5 | + | 0.6 | ||
traP | TraP | pCTX-M3 | CDS | 44344 | 705 | + | 0.465248 | |
traQ | TraQ | pCTX-M3 | CDS | 45072 | 531 | + | 0.480226 | |
traQ | pCTX-M3 | RBS | 45061 | 4 | + | 0.5 | ||
traR | pCTX-M3 | RBS | 45608 | 5 | + | 0.4 | ||
traR | TraR | pCTX-M3 | CDS | 45619 | 390 | + | 0.482051 | |
traU | pCTX-M3 | RBS | 46535 | 4 | + | 0.75 | ||
traU | TraU | pCTX-M3 | CDS | 46545 | 3051 | + | 0.470993 | |
traW | TraW | pCTX-M3 | CDS | 49592 | 1209 | + | 0.535153 | |
traW | pCTX-M3 | RBS | 49581 | 4 | + | 0.75 | ||
traX | TraX | pCTX-M3 | CDS | 50797 | 651 | + | 0.423963 | |
traX | pCTX-M3 | RBS | 50783 | 4 | + | 0.75 | ||
traY | pCTX-M3 | RBS | 51428 | 5 | + | 0.8 | ||
traY | TraY | pCTX-M3 | CDS | 51440 | 2181 | + | 0.451628 | |
trbA | pCTX-M3 | RBS | 88522 | 4 | - | 0.75 | ||
trbA | TrbA | pCTX-M3 | CDS | 87209 | 1308 | - | 0.571101 | |
trbB | TrbB | pCTX-M3 | CDS | 86248 | 951 | - | 0.555205 | |
trbB | pCTX-M3 | RBS | 87203 | 4 | - | 0.75 | ||
trbC | TrbC | pCTX-M3 | CDS | 84148 | 2088 | - | 0.546935 | |
trbC | pCTX-M3 | RBS | 86241 | 4 | - | 0.75 | ||
trbN | pCTX-M3 | RBS | 88918 | 5 | - | 0.6 | ||
trbN | putative lytic transglycosylase | pCTX-M3 | CDS | 88516 | 396 | - | 0.522727 |