Gene list
Applied filters:
Organism: Plasmid F
Number of genes found: 224
Show UniProt / TrEMBL protein name | View in Fasta format (DNA) | View in Fasta format (Protein) | ||||
Plasmid F | ||||||||
---|---|---|---|---|---|---|---|---|
Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
NA | Plasmid F | repeat_unit | 1 | 39 | + | 0.512821 | ||
NA | Plasmid F | repeat_unit | 63226 | 14 | + | 0.642857 | ||
NA | Plasmid F | repeat_unit | 62942 | 14 | + | 0.5 | ||
NA | Plasmid F | repeat_unit | 62978 | 159 | + | 0.484277 | ||
NA | Plasmid F | repeat_region | 4191 | 5981 | + | 0.425013 | ||
NA | Plasmid F | conflict | 88699 | 2 | + | 0.5 | ||
NA | Plasmid F | repeat_unit | 36622 | 21 | + | 0.333333 | ||
NA | Plasmid F | repeat_region | 89594 | 95 | + | 0.410526 | ||
NA | Plasmid F | misc_feature | 45934 | 202 | + | 0.49505 | ||
NA | Plasmid F | repeat_region | 66340 | 68 | + | 0.602941 | ||
NA | Plasmid F | repeat_region | 57997 | 90 | + | 0.444444 | ||
NA | Plasmid F | repeat_region | 68648 | 39 | + | 0.410256 | ||
NA | Plasmid F | conflict | 43446 | 1 | + | 1 | ||
NA | Plasmid F | conflict | 44747 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 24085 | 372 | + | 0.475806 | ||
NA | Plasmid F | conflict | 91955 | 1 | + | |||
NA | Plasmid F | repeat_unit | 52387 | 43 | + | 0.511628 | ||
NA | Plasmid F | repeat_unit | 48254 | 20 | + | 0.4 | ||
NA | Plasmid F | conflict | 44736 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 48275 | 20 | + | 0.45 | ||
NA | Plasmid F | conflict | 69385 | 1 | + | 1 | ||
NA | Plasmid F | repeat_region | 68700 | 115 | + | 0.530435 | ||
NA | Plasmid F | repeat_unit | 16312 | 39 | + | 0.512821 | ||
NA | Plasmid F | conflict | 77059 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 37858 | 21 | + | 0.380952 | ||
NA | Plasmid F | conflict | 92597 | 1 | + | 1 | ||
NA | Plasmid F | conflict | 48030 | 1 | + | |||
NA | Plasmid F | repeat_unit | 24829 | 372 | + | 0.467742 | ||
NA | Plasmid F | conflict | 44769 | 1 | + | 1 | ||
NA | Plasmid F | conflict | 69409 | 2 | + | 0.5 | ||
NA | Plasmid F | conflict | 83304 | 6 | + | 0.5 | ||
NA | Plasmid F | conflict | 98794 | 1 | + | 1 | ||
NA | Plasmid F | conflict | 89730 | 3 | + | 1 | ||
NA | Plasmid F | conflict | 68972 | 1 | + | |||
NA | Plasmid F | repeat_unit | 18951 | 42 | + | 0.452381 | ||
NA | Plasmid F | repeat_unit | 36552 | 21 | - | 0.380952 | ||
NA | Plasmid F | conflict | 52762 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 4191 | 35 | + | 0.514286 | ||
NA | Plasmid F | repeat_unit | 1220 | 39 | + | 0.512821 | ||
NA | Plasmid F | conflict | 52320 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 49350 | 19 | + | 0.526316 | ||
NA | Plasmid F | repeat_unit | 51999 | 44 | + | 0.522727 | ||
NA | Plasmid F | repeat_region | 66944 | 17 | + | 0.529412 | ||
NA | Plasmid F | conflict | 89238 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 52215 | 43 | + | 0.511628 | ||
NA | Plasmid F | conflict | 2059 | 1 | + | |||
NA | Plasmid F | conflict | 44709 | 1 | + | 1 | ||
NA | Plasmid F | repeat_region | 67022 | 30 | + | 0.433333 | ||
NA | Plasmid F | repeat_unit | 36592 | 21 | - | 0.285714 | ||
NA | Plasmid F | repeat_unit | 63208 | 14 | + | 0.642857 | ||
NA | Plasmid F | conflict | 68914 | 2 | + | 0.5 | ||
NA | Plasmid F | repeat_region | 66985 | 31 | + | 0.612903 | ||
NA | Plasmid F | conflict | 44816 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 37837 | 21 | + | 0.380952 | ||
NA | Plasmid F | conflict | 56074 | 1 | + | 1 | ||
NA | Plasmid F | conflict | 3084 | 2 | + | 1 | ||
NA | Plasmid F | repeat_unit | 48308 | 20 | + | 0.4 | ||
NA | Plasmid F | conflict | 76701 | 1 | + | |||
NA | Plasmid F | repeat_unit | 49204 | 19 | + | 0.473684 | ||
NA | Plasmid F | conflict | 3089 | 1 | + | 1 | ||
NA | Plasmid F | repeat_region | 66250 | 45 | + | 0.6 | ||
NA | Plasmid F | conflict | 89565 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 15093 | 39 | + | 0.512821 | ||
NA | Plasmid F | conflict | 64598 | 1 | + | |||
NA | Plasmid F | repeat_unit | 52344 | 43 | + | 0.534884 | ||
NA | Plasmid F | repeat_unit | 52129 | 43 | + | 0.534884 | ||
NA | Plasmid F | repeat_unit | 58081 | 541 | + | 0.615527 | ||
NA | Plasmid F | repeat_unit | 52258 | 43 | + | 0.534884 | ||
NA | Plasmid F | repeat_region | 67654 | 21 | + | 0.238095 | ||
NA | Plasmid F | repeat_unit | 63157 | 18 | + | 0.611111 | ||
NA | Plasmid F | repeat_region | 66156 | 18 | + | 0.555556 | ||
NA | Plasmid F | repeat_unit | 36407 | 21 | - | 0.47619 | ||
NA | Plasmid F | conflict | 67995 | 1 | + | |||
NA | Plasmid F | repeat_unit | 63469 | 543 | + | 0.626151 | ||
NA | Plasmid F | repeat_unit | 49433 | 19 | + | 0.421053 | ||
NA | Plasmid F | repeat_unit | 36377 | 21 | - | 0.428571 | ||
NA | Plasmid F | repeat_unit | 25201 | 372 | + | 0.483871 | ||
NA | Plasmid F | repeat_region | 88730 | 39 | + | 0.307692 | ||
NA | Plasmid F | repeat_unit | 62899 | 15 | + | 0.666667 | ||
NA | Plasmid F | repeat_unit | 52172 | 43 | + | 0.55814 | ||
NA | Plasmid F | repeat_unit | 52043 | 43 | + | 0.55814 | ||
NA | Plasmid F | repeat_unit | 62880 | 14 | + | 0.357143 | ||
NA | Plasmid F | repeat_unit | 49226 | 19 | + | 0.526316 | ||
NA | Plasmid F | conflict | 47310 | 2 | + | 0.5 | ||
NA | Plasmid F | repeat_unit | 10137 | 35 | + | 0.514286 | ||
NA | Plasmid F | repeat_unit | 63135 | 18 | + | 0.777778 | ||
NA | Plasmid F | repeat_unit | 25573 | 246 | + | 0.422764 | ||
NA | Plasmid F | repeat_unit | 37816 | 21 | + | 0.285714 | ||
NA | Plasmid F | repeat_unit | 17662 | 41 | + | 0.365854 | ||
NA | Plasmid F | oriT | 66118 | 290 | + | 0.431034 | ||
NA | Plasmid F | repeat_unit | 62107 | 10 | + | 0.5 | ||
NA | Plasmid F | repeat_unit | 35982 | 21 | - | 0.380952 | ||
NA | Plasmid F | repeat_unit | 24457 | 372 | + | 0.47043 | ||
NA | Plasmid F | conflict | 48051 | 2 | + | 0.5 | ||
NA | Plasmid F | repeat_unit | 52086 | 43 | + | 0.534884 | ||
NA | Plasmid F | repeat_unit | 52301 | 43 | + | 0.534884 | ||
NA | Plasmid F | repeat_region | 66130 | 20 | + | 0.5 | ||
NA | Plasmid F | repeat_unit | 36425 | 21 | - | 0.333333 | ||
NA | Plasmid F | conflict | 69563 | 1 | + | 1 | ||
NA | Plasmid F | misc_feature | 66157 | 2 | + | 0.5 | ||
NA | Plasmid F | repeat_unit | 38218 | 21 | - | 0.380952 | ||
NA | Plasmid F | misc_feature | 45922 | 28 | + | 0.464286 | ||
NA | Plasmid F | repeat_unit | 48330 | 20 | + | 0.5 | ||
NA | Plasmid F | repeat_unit | 62057 | 10 | + | 0.5 | ||
NA | Plasmid F | conflict | 53741 | 1 | + | 1 | ||
NA | Plasmid F | repeat_unit | 49259 | 19 | + | 0.421053 | ||
NA | Plasmid F | repeat_unit | 52430 | 43 | + | 0.534884 | ||
NA | Plasmid F | misc_feature | 48136 | 217 | + | 0.396313 | ||
IS2 | Plasmid F | repeat_region | 17662 | 1331 | + | 0.530428 | ||
IS3a | Plasmid F | repeat_region | 1 | 1258 | + | 0.535771 | ||
IS3b | Plasmid F | repeat_region | 15093 | 1258 | + | 0.533386 | ||
artA | Plasmid F | CDS | 82206 | 315 | - | 0.336508 | ||
ccdA(letA) | Plasmid F | CDS | 46340 | 219 | + | 0.506849 | ||
ccdB(letD) | Plasmid F | CDS | 46560 | 306 | + | 0.503268 | ||
finO | Plasmid F | repeat_unit | 99157 | 3 | + | 0.666667 | ||
finO | Plasmid F | misc_feature | 1259 | 97901 | + | 0.480986 | ||
finO | Plasmid F | repeat_unit | 1259 | 3 | + | 0.666667 | ||
finP | Plasmid F | misc_RNA | 66977 | 79 | - | 0.493671 | ||
flmA | Plasmid F | CDS | 62976 | 159 | + | 0.477987 | ||
flmB | Plasmid F | misc_RNA | 62827 | 101 | - | 0.49505 | ||
flmC | Plasmid F | CDS | 62918 | 213 | + | 0.483568 | ||
inc | Plasmid F | misc_RNA | 3747 | 93 | - | 0.462366 | ||
int | Plasmid F | CDS | 35618 | 741 | + | 0.5722 | ||
ompP | Plasmid F | CDS | 32322 | 948 | + | 0.418776 | ||
pifA | Plasmid F | CDS | 42445 | 2226 | - | 0.484277 | ||
psiA | Plasmid F | CDS | 61982 | 720 | + | 0.602778 | ||
psiB | Plasmid F | CDS | 61551 | 435 | + | 0.567816 | ||
repA1 | RepFIC replication initiation protein | Plasmid F | misc_feature | 3917 | 274 | + | 0.416058 | |
repA2 | replication regulatory protein | Plasmid F | CDS | 3359 | 258 | + | 0.492248 | |
repB | Plasmid F | CDS | 36643 | 978 | - | 0.521472 | ||
repC | replication protein | Plasmid F | CDS | 44672 | 1092 | - | 0.630037 | |
repE | replication initiation protein | Plasmid F | CDS | 48446 | 756 | + | 0.472222 | |
repL | Plasmid F | CDS | 3850 | 75 | + | 0.466667 | ||
resD | resolvase | Plasmid F | CDS | 46866 | 807 | + | 0.57373 | |
sopA | Plasmid F | CDS | 49780 | 1176 | + | 0.471088 | ||
sopB | Plasmid F | CDS | 50955 | 972 | + | 0.460905 | ||
srnB | Plasmid F | CDS | 2869 | 207 | + | 0.458937 | ||
srnB' | Plasmid F | CDS | 2926 | 150 | + | 0.48 | ||
srnC | Plasmid F | misc_RNA | 2821 | 62 | - | 0.419355 | ||
ssb | single-strand DNA binding protein | Plasmid F | CDS | 58643 | 540 | + | 0.598148 | |
tnpA | Plasmid F | CDS | 7130 | 3009 | + | 0.484546 | ||
tnpR | Plasmid F | CDS | 6415 | 552 | - | 0.445652 | ||
tnpX | Plasmid F | CDS | 4303 | 2097 | - | 0.343348 | ||
traA | prepropilin | Plasmid F | CDS | 68265 | 366 | + | 0.516393 | |
traB | Plasmid F | CDS | 70259 | 1428 | + | 0.572829 | ||
traC | Plasmid F | CDS | 73741 | 2628 | + | 0.540715 | ||
traD | Plasmid F | CDS | 89804 | 2154 | + | 0.52182 | ||
traE | Plasmid F | CDS | 68978 | 567 | + | 0.469136 | ||
traF | Plasmid F | CDS | 81068 | 774 | + | 0.509044 | ||
traG | Plasmid F | CDS | 85425 | 2817 | + | 0.503727 | ||
traH | Plasmid F | CDS | 84052 | 1377 | + | 0.51634 | ||
traI | Plasmid F | CDS | 92673 | 5271 | + | 0.596282 | ||
traJ | Plasmid F | CDS | 67049 | 690 | + | 0.334783 | ||
traK | Plasmid F | CDS | 69531 | 729 | + | 0.569273 | ||
traL | Plasmid F | CDS | 68645 | 312 | + | 0.471154 | ||
traM | Plasmid F | CDS | 66479 | 384 | + | 0.385417 | ||
traN | Plasmid F | CDS | 79013 | 1809 | + | 0.525152 | ||
traP | Plasmid F | CDS | 71676 | 591 | + | 0.502538 | ||
traQ | Plasmid F | CDS | 82601 | 285 | + | 0.533333 | ||
traR | Plasmid F | CDS | 73360 | 222 | + | 0.441441 | ||
traS | surface exclusion protien | Plasmid F | CDS | 88274 | 522 | + | 0.346743 | |
traT | surface exclusion protien | Plasmid F | CDS | 88817 | 735 | + | 0.502041 | |
traU | Plasmid F | CDS | 77377 | 993 | + | 0.55287 | ||
traV | Plasmid F | CDS | 72710 | 516 | + | 0.532946 | ||
traW | Plasmid F | CDS | 76748 | 633 | + | 0.595577 | ||
traX | Plasmid F | CDS | 97963 | 747 | + | 0.579652 | ||
traY | Plasmid F | CDS | 67837 | 396 | + | 0.381313 | ||
trbA | Plasmid F | CDS | 81857 | 348 | + | 0.41092 | ||
trbB | Plasmid F | CDS | 82872 | 546 | + | 0.567766 | ||
trbC | Plasmid F | CDS | 78378 | 639 | + | 0.552426 | ||
trbD | Plasmid F | CDS | 72253 | 198 | + | 0.409091 | ||
trbE | Plasmid F | CDS | 80845 | 261 | + | 0.409962 | ||
trbF | Plasmid F | CDS | 83675 | 381 | + | 0.380577 | ||
trbG | Plasmid F | CDS | 72462 | 252 | + | 0.424603 | ||
trbH | Plasmid F | CDS | 91957 | 720 | + | 0.490278 | ||
trbI | Plasmid F | CDS | 76365 | 387 | + | 0.576227 | ||
trbJ | Plasmid F | CDS | 83347 | 342 | + | 0.45614 | ||
yaaA | Plasmid F | CDS | 66 | 300 | + | 0.5 | ||
yaaB | Plasmid F | CDS | 362 | 867 | + | 0.551326 | ||
yacA | Plasmid F | CDS | 2110 | 441 | + | 0.419501 | ||
ybaA | Plasmid F | CDS | 10729 | 1062 | - | 0.308851 | ||
ybbA | Plasmid F | CDS | 11900 | 414 | - | 0.301932 | ||
ybcA | Plasmid F | CDS | 12477 | 564 | - | 0.315603 | ||
ybdA | Plasmid F | CDS | 13047 | 414 | - | 0.335749 | ||
ybdB | Plasmid F | CDS | 13453 | 603 | - | 0.280265 | ||
ybfA | Plasmid F | CDS | 15158 | 300 | + | 0.503333 | ||
ybfB | Plasmid F | CDS | 15454 | 867 | + | 0.546713 | ||
ybgA | Plasmid F | CDS | 16317 | 255 | - | 0.517647 | ||
ybhA | Plasmid F | CDS | 17216 | 333 | + | 0.558559 | ||
ybhB | Plasmid F | CDS | 17673 | 906 | - | 0.550773 | ||
ybiA | Plasmid F | CDS | 18536 | 411 | - | 0.508516 | ||
ybiB | Plasmid F | CDS | 18858 | 285 | + | 0.494737 | ||
ybjA | Plasmid F | CDS | 19245 | 210 | + | 0.395238 | ||
ycaA | Plasmid F | CDS | 20096 | 696 | - | 0.28592 | ||
ycbA | Plasmid F | CDS | 21222 | 234 | - | 0.311966 | ||
ycbB | Plasmid F | CDS | 21541 | 5277 | - | 0.406291 | ||
ycgA | Plasmid F | CDS | 26990 | 270 | + | 0.285185 | ||
ychA | Plasmid F | CDS | 27486 | 4116 | - | 0.447522 | ||
yddA | Plasmid F | CDS | 33362 | 1500 | + | 0.419333 | ||
ydfA | Plasmid F | CDS | 35217 | 288 | + | 0.5 | ||
ydhA | Plasmid F | CDS | 37942 | 462 | - | 0.493506 | ||
ydiA | Plasmid F | CDS | 38460 | 642 | - | 0.524922 | ||
ydjA | Plasmid F | CDS | 39088 | 231 | + | 0.536797 | ||
yeaA | Plasmid F | CDS | 40634 | 237 | - | 0.50211 | ||
yebA | Plasmid F | CDS | 41216 | 291 | + | 0.457045 | ||
yebB | Plasmid F | CDS | 41496 | 900 | + | 0.472222 | ||
yfcA | Plasmid F | CDS | 52569 | 273 | + | 0.608059 | ||
yfcB | Plasmid F | CDS | 52855 | 507 | + | 0.552268 | ||
yfdA | Plasmid F | CDS | 53343 | 438 | + | 0.538813 | ||
yfdB | Plasmid F | CDS | 53784 | 306 | + | 0.640523 | ||
yfeA | Plasmid F | CDS | 54166 | 684 | + | 0.570175 | ||
yfeB | Plasmid F | CDS | 54850 | 222 | + | 0.536036 | ||
yffA | Plasmid F | CDS | 55085 | 435 | + | 0.581609 | ||
yffB | Plasmid F | CDS | 55565 | 777 | + | 0.608752 | ||
yfgA | Plasmid F | CDS | 56429 | 312 | + | 0.644231 | ||
yfgB | Plasmid F | CDS | 56755 | 426 | + | 0.549296 | ||
yfhA | Plasmid F | CDS | 57227 | 423 | + | 0.55792 | ||
yfhB | Plasmid F | CDS | 57956 | 399 | + | 0.60401 | ||
yfjA | Plasmid F | CDS | 59233 | 240 | + | 0.508333 | ||
yfjB | Plasmid F | CDS | 59538 | 1959 | + | 0.581419 | ||
ygdA | Plasmid F | CDS | 63372 | 318 | - | 0.622642 | ||
ygeA | Plasmid F | CDS | 64032 | 288 | + | 0.527778 | ||
ygeB | Plasmid F | CDS | 64438 | 822 | + | 0.442822 | ||
ygfA | Plasmid F | CDS | 65556 | 510 | - | 0.452941 |